Multiple sequence alignment - TraesCS7A01G456700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G456700 chr7A 100.000 4844 0 0 1 4844 652514307 652519150 0.000000e+00 8946.0
1 TraesCS7A01G456700 chr7A 91.722 302 23 1 349 650 59298106 59298405 7.500000e-113 418.0
2 TraesCS7A01G456700 chr7A 76.605 701 98 33 1301 1986 117351503 117350854 4.680000e-85 326.0
3 TraesCS7A01G456700 chr7A 73.941 614 140 11 689 1285 22626282 22626892 3.770000e-56 230.0
4 TraesCS7A01G456700 chr7D 94.961 1905 83 6 2151 4054 566201310 566203202 0.000000e+00 2974.0
5 TraesCS7A01G456700 chr7D 92.027 1781 111 8 2151 3907 566320886 566322659 0.000000e+00 2473.0
6 TraesCS7A01G456700 chr7D 94.428 664 22 2 651 1299 566200407 566201070 0.000000e+00 1007.0
7 TraesCS7A01G456700 chr7D 90.541 666 46 8 651 1299 566319987 566320652 0.000000e+00 865.0
8 TraesCS7A01G456700 chr7D 90.865 416 31 3 4374 4783 566203198 566203612 7.090000e-153 551.0
9 TraesCS7A01G456700 chr7D 87.931 464 54 1 3218 3679 566256712 566257175 3.300000e-151 545.0
10 TraesCS7A01G456700 chr7D 98.065 155 3 0 1985 2139 566201068 566201222 2.220000e-68 270.0
11 TraesCS7A01G456700 chr7D 93.333 165 9 1 1985 2149 566320650 566320812 4.840000e-60 243.0
12 TraesCS7A01G456700 chr7D 79.023 348 51 15 1636 1981 1904200 1904527 8.160000e-53 219.0
13 TraesCS7A01G456700 chr7D 89.209 139 12 2 1348 1486 1903981 1904116 2.320000e-38 171.0
14 TraesCS7A01G456700 chr7D 96.552 58 2 0 4785 4842 566203645 566203702 3.990000e-16 97.1
15 TraesCS7A01G456700 chr7B 93.263 1425 67 5 2643 4049 617849836 617851249 0.000000e+00 2073.0
16 TraesCS7A01G456700 chr7B 85.360 1694 183 36 2196 3847 618334337 618336007 0.000000e+00 1694.0
17 TraesCS7A01G456700 chr7B 85.353 1700 177 39 2196 3853 618761026 618759357 0.000000e+00 1694.0
18 TraesCS7A01G456700 chr7B 85.301 1694 184 36 2196 3847 618850333 618848663 0.000000e+00 1688.0
19 TraesCS7A01G456700 chr7B 93.062 663 32 6 651 1299 618851549 618850887 0.000000e+00 957.0
20 TraesCS7A01G456700 chr7B 92.911 663 33 6 651 1299 618762243 618761581 0.000000e+00 952.0
21 TraesCS7A01G456700 chr7B 91.855 663 40 4 651 1299 617839615 617840277 0.000000e+00 913.0
22 TraesCS7A01G456700 chr7B 97.375 419 11 0 2230 2648 617840672 617841090 0.000000e+00 713.0
23 TraesCS7A01G456700 chr7B 94.545 165 9 0 1985 2149 617840275 617840439 6.220000e-64 255.0
24 TraesCS7A01G456700 chr7B 96.809 94 3 0 2151 2244 617840513 617840606 1.800000e-34 158.0
25 TraesCS7A01G456700 chr7B 95.455 66 3 0 1920 1985 741249059 741248994 6.630000e-19 106.0
26 TraesCS7A01G456700 chr5B 78.784 1546 260 48 2336 3846 598659266 598657754 0.000000e+00 976.0
27 TraesCS7A01G456700 chr5B 79.873 1257 199 33 2575 3807 599122966 599121740 0.000000e+00 870.0
28 TraesCS7A01G456700 chr5B 80.199 1207 193 30 2575 3762 598755472 598754293 0.000000e+00 863.0
29 TraesCS7A01G456700 chr5B 77.745 1020 188 27 2591 3603 79814007 79813020 1.500000e-164 590.0
30 TraesCS7A01G456700 chr5B 81.659 627 98 12 684 1293 598660193 598659567 5.600000e-139 505.0
31 TraesCS7A01G456700 chr5B 92.138 318 24 1 36 353 347667635 347667319 9.560000e-122 448.0
32 TraesCS7A01G456700 chr5B 92.095 253 20 0 2 254 347667879 347667627 1.660000e-94 357.0
33 TraesCS7A01G456700 chr5B 74.734 657 143 17 652 1291 693011966 693011316 6.180000e-69 272.0
34 TraesCS7A01G456700 chr5D 81.905 1050 152 30 2575 3602 487006111 487007144 0.000000e+00 852.0
35 TraesCS7A01G456700 chr5D 77.941 1020 185 27 2591 3602 72911133 72910146 6.940000e-168 601.0
36 TraesCS7A01G456700 chr5D 82.315 622 97 7 684 1293 487175080 487174460 1.190000e-145 527.0
37 TraesCS7A01G456700 chr5D 82.072 608 92 12 703 1293 486909860 486909253 2.010000e-138 503.0
38 TraesCS7A01G456700 chr5D 74.879 621 141 10 681 1288 558946815 558947433 7.990000e-68 268.0
39 TraesCS7A01G456700 chr5D 83.394 277 40 2 1716 1986 526265816 526266092 8.050000e-63 252.0
40 TraesCS7A01G456700 chr5D 85.052 194 19 7 1798 1983 559077292 559077101 6.400000e-44 189.0
41 TraesCS7A01G456700 chr4A 78.154 1300 250 26 2331 3606 579527912 579526623 0.000000e+00 797.0
42 TraesCS7A01G456700 chr4A 96.285 323 12 0 4056 4378 548568999 548568677 9.230000e-147 531.0
43 TraesCS7A01G456700 chr4A 75.228 658 121 23 652 1288 612057070 612057706 1.720000e-69 274.0
44 TraesCS7A01G456700 chr4A 80.795 151 10 7 199 349 739878666 739878535 3.080000e-17 100.0
45 TraesCS7A01G456700 chr6D 92.086 556 29 2 95 650 370038490 370037950 0.000000e+00 769.0
46 TraesCS7A01G456700 chr6D 91.786 560 30 2 95 654 10689978 10689435 0.000000e+00 765.0
47 TraesCS7A01G456700 chr6D 91.722 302 25 0 349 650 448578566 448578265 2.080000e-113 420.0
48 TraesCS7A01G456700 chr3D 91.906 556 31 2 95 650 231174844 231175385 0.000000e+00 765.0
49 TraesCS7A01G456700 chr3D 86.277 685 51 27 1300 1982 401047051 401047694 0.000000e+00 704.0
50 TraesCS7A01G456700 chr3D 90.769 65 6 0 1538 1602 401047316 401047380 2.400000e-13 87.9
51 TraesCS7A01G456700 chr1D 91.547 556 33 1 95 650 2465683 2465142 0.000000e+00 754.0
52 TraesCS7A01G456700 chr1D 92.105 418 30 3 1571 1986 328911531 328911115 1.940000e-163 586.0
53 TraesCS7A01G456700 chr1D 91.977 349 28 0 1295 1643 328911774 328911426 1.570000e-134 490.0
54 TraesCS7A01G456700 chr3A 75.920 1304 240 50 2581 3855 100353338 100354596 6.940000e-168 601.0
55 TraesCS7A01G456700 chr3A 95.166 331 15 1 4052 4382 637478322 637478651 5.560000e-144 521.0
56 TraesCS7A01G456700 chr3A 94.785 326 17 0 4053 4378 550144893 550145218 4.330000e-140 508.0
57 TraesCS7A01G456700 chr3A 95.046 323 16 0 4056 4378 690220011 690219689 4.330000e-140 508.0
58 TraesCS7A01G456700 chr3A 94.311 334 16 3 4051 4382 691401230 691400898 4.330000e-140 508.0
59 TraesCS7A01G456700 chr3A 92.027 301 24 0 349 649 29022277 29021977 1.610000e-114 424.0
60 TraesCS7A01G456700 chr3A 76.012 692 122 30 1301 1985 42744203 42744857 7.820000e-83 318.0
61 TraesCS7A01G456700 chrUn 94.318 352 19 1 2 353 46099250 46098900 5.520000e-149 538.0
62 TraesCS7A01G456700 chrUn 93.791 306 18 1 349 654 46098869 46098565 4.420000e-125 459.0
63 TraesCS7A01G456700 chr1A 96.894 322 9 1 4056 4376 380891939 380891618 5.520000e-149 538.0
64 TraesCS7A01G456700 chr1A 95.356 323 15 0 4056 4378 30569912 30569590 9.300000e-142 514.0
65 TraesCS7A01G456700 chr6A 95.399 326 15 0 4053 4378 588365340 588365665 2.000000e-143 520.0
66 TraesCS7A01G456700 chr2D 93.373 332 22 0 4056 4387 343158365 343158034 4.360000e-135 492.0
67 TraesCS7A01G456700 chr5A 93.115 305 21 0 349 653 556156700 556156396 9.560000e-122 448.0
68 TraesCS7A01G456700 chr5A 80.818 318 61 0 671 988 607587810 607587493 2.890000e-62 250.0
69 TraesCS7A01G456700 chr5A 94.393 107 5 1 247 353 556156836 556156731 3.880000e-36 163.0
70 TraesCS7A01G456700 chr2B 77.442 727 120 30 1299 1984 765783789 765783066 1.260000e-105 394.0
71 TraesCS7A01G456700 chr3B 90.968 155 13 1 199 353 344665972 344666125 1.770000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G456700 chr7A 652514307 652519150 4843 False 8946.000000 8946 100.0000 1 4844 1 chr7A.!!$F3 4843
1 TraesCS7A01G456700 chr7A 117350854 117351503 649 True 326.000000 326 76.6050 1301 1986 1 chr7A.!!$R1 685
2 TraesCS7A01G456700 chr7A 22626282 22626892 610 False 230.000000 230 73.9410 689 1285 1 chr7A.!!$F1 596
3 TraesCS7A01G456700 chr7D 566319987 566322659 2672 False 1193.666667 2473 91.9670 651 3907 3 chr7D.!!$F4 3256
4 TraesCS7A01G456700 chr7D 566200407 566203702 3295 False 979.820000 2974 94.9742 651 4842 5 chr7D.!!$F3 4191
5 TraesCS7A01G456700 chr7B 617849836 617851249 1413 False 2073.000000 2073 93.2630 2643 4049 1 chr7B.!!$F1 1406
6 TraesCS7A01G456700 chr7B 618334337 618336007 1670 False 1694.000000 1694 85.3600 2196 3847 1 chr7B.!!$F2 1651
7 TraesCS7A01G456700 chr7B 618759357 618762243 2886 True 1323.000000 1694 89.1320 651 3853 2 chr7B.!!$R2 3202
8 TraesCS7A01G456700 chr7B 618848663 618851549 2886 True 1322.500000 1688 89.1815 651 3847 2 chr7B.!!$R3 3196
9 TraesCS7A01G456700 chr7B 617839615 617841090 1475 False 509.750000 913 95.1460 651 2648 4 chr7B.!!$F3 1997
10 TraesCS7A01G456700 chr5B 599121740 599122966 1226 True 870.000000 870 79.8730 2575 3807 1 chr5B.!!$R3 1232
11 TraesCS7A01G456700 chr5B 598754293 598755472 1179 True 863.000000 863 80.1990 2575 3762 1 chr5B.!!$R2 1187
12 TraesCS7A01G456700 chr5B 598657754 598660193 2439 True 740.500000 976 80.2215 684 3846 2 chr5B.!!$R6 3162
13 TraesCS7A01G456700 chr5B 79813020 79814007 987 True 590.000000 590 77.7450 2591 3603 1 chr5B.!!$R1 1012
14 TraesCS7A01G456700 chr5B 347667319 347667879 560 True 402.500000 448 92.1165 2 353 2 chr5B.!!$R5 351
15 TraesCS7A01G456700 chr5B 693011316 693011966 650 True 272.000000 272 74.7340 652 1291 1 chr5B.!!$R4 639
16 TraesCS7A01G456700 chr5D 487006111 487007144 1033 False 852.000000 852 81.9050 2575 3602 1 chr5D.!!$F1 1027
17 TraesCS7A01G456700 chr5D 72910146 72911133 987 True 601.000000 601 77.9410 2591 3602 1 chr5D.!!$R1 1011
18 TraesCS7A01G456700 chr5D 487174460 487175080 620 True 527.000000 527 82.3150 684 1293 1 chr5D.!!$R3 609
19 TraesCS7A01G456700 chr5D 486909253 486909860 607 True 503.000000 503 82.0720 703 1293 1 chr5D.!!$R2 590
20 TraesCS7A01G456700 chr5D 558946815 558947433 618 False 268.000000 268 74.8790 681 1288 1 chr5D.!!$F3 607
21 TraesCS7A01G456700 chr4A 579526623 579527912 1289 True 797.000000 797 78.1540 2331 3606 1 chr4A.!!$R2 1275
22 TraesCS7A01G456700 chr4A 612057070 612057706 636 False 274.000000 274 75.2280 652 1288 1 chr4A.!!$F1 636
23 TraesCS7A01G456700 chr6D 370037950 370038490 540 True 769.000000 769 92.0860 95 650 1 chr6D.!!$R2 555
24 TraesCS7A01G456700 chr6D 10689435 10689978 543 True 765.000000 765 91.7860 95 654 1 chr6D.!!$R1 559
25 TraesCS7A01G456700 chr3D 231174844 231175385 541 False 765.000000 765 91.9060 95 650 1 chr3D.!!$F1 555
26 TraesCS7A01G456700 chr3D 401047051 401047694 643 False 395.950000 704 88.5230 1300 1982 2 chr3D.!!$F2 682
27 TraesCS7A01G456700 chr1D 2465142 2465683 541 True 754.000000 754 91.5470 95 650 1 chr1D.!!$R1 555
28 TraesCS7A01G456700 chr1D 328911115 328911774 659 True 538.000000 586 92.0410 1295 1986 2 chr1D.!!$R2 691
29 TraesCS7A01G456700 chr3A 100353338 100354596 1258 False 601.000000 601 75.9200 2581 3855 1 chr3A.!!$F2 1274
30 TraesCS7A01G456700 chr3A 42744203 42744857 654 False 318.000000 318 76.0120 1301 1985 1 chr3A.!!$F1 684
31 TraesCS7A01G456700 chrUn 46098565 46099250 685 True 498.500000 538 94.0545 2 654 2 chrUn.!!$R1 652
32 TraesCS7A01G456700 chr2B 765783066 765783789 723 True 394.000000 394 77.4420 1299 1984 1 chr2B.!!$R1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 715 0.250553 GAATGACGTGTGGGTCCCAA 60.251 55.000 13.78 0.0 34.18 4.12 F
918 1185 1.361668 CCGTGGCATGTTCGAGGAAG 61.362 60.000 5.89 0.0 0.00 3.46 F
1548 1890 1.062525 CAATTCACCGCCGCTAAGC 59.937 57.895 0.00 0.0 0.00 3.09 F
1712 2143 1.136984 GATCTCGCTTCACCGACGT 59.863 57.895 0.00 0.0 33.12 4.34 F
1776 2222 1.282875 GTTGTTCTGAACGGCTGGC 59.717 57.895 15.18 0.0 0.00 4.85 F
3534 4579 1.350071 AGCAGGGGCATCTCTCTATG 58.650 55.000 0.00 0.0 44.61 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1324 1609 1.204704 CACTGTATTCGGGAGACAGCA 59.795 52.381 10.91 0.0 43.60 4.41 R
2266 3181 1.677217 GGAGCAAGTCGGCAGAAAGAT 60.677 52.381 0.00 0.0 35.83 2.40 R
3171 4142 1.342672 GGTCCGGCCTTTCCCATCTA 61.343 60.000 0.00 0.0 0.00 1.98 R
3689 4805 0.179045 AGACCTTGCGCCATACATCC 60.179 55.000 4.18 0.0 0.00 3.51 R
3706 4822 2.703536 TCAGCAACCACCTCTTTACAGA 59.296 45.455 0.00 0.0 0.00 3.41 R
4363 5512 0.750850 TTAGCACTAGACGATGCCCC 59.249 55.000 0.00 0.0 43.12 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.062466 CCGACGACCTGCTCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
104 105 2.915659 TCTTCTGGCGTCGGTGGT 60.916 61.111 0.00 0.00 0.00 4.16
139 140 3.414700 CCACGTCAACTCGCTGCC 61.415 66.667 0.00 0.00 0.00 4.85
251 462 3.374402 CGTCGTGCCACCTCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
372 617 4.851214 GCCTCCCTCTCGCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
403 648 4.424711 GGGAGCCGGGATGCACAA 62.425 66.667 6.05 0.00 0.00 3.33
422 667 5.799681 ACAAAAGCTGTTTGTGAAAATGG 57.200 34.783 19.48 0.00 40.70 3.16
426 671 3.460103 AGCTGTTTGTGAAAATGGCAAG 58.540 40.909 0.00 0.00 0.00 4.01
470 715 0.250553 GAATGACGTGTGGGTCCCAA 60.251 55.000 13.78 0.00 34.18 4.12
493 738 7.040755 CCAACTGTAATAATGGTCAACTGAACA 60.041 37.037 0.00 0.00 46.96 3.18
531 776 8.425577 AAATCGTCTAAACTGGTCATTATCTG 57.574 34.615 0.00 0.00 0.00 2.90
629 874 1.676615 GGACGCGAACCCCTAAAATGA 60.677 52.381 15.93 0.00 0.00 2.57
918 1185 1.361668 CCGTGGCATGTTCGAGGAAG 61.362 60.000 5.89 0.00 0.00 3.46
938 1205 6.071616 AGGAAGGCATAAAAAGCGTGATAAAA 60.072 34.615 0.00 0.00 0.00 1.52
939 1206 6.756542 GGAAGGCATAAAAAGCGTGATAAAAT 59.243 34.615 0.00 0.00 0.00 1.82
1281 1566 2.798501 CGCTGGCCGTTACATCACG 61.799 63.158 0.00 0.00 40.02 4.35
1324 1609 2.197577 CGTTTGGTTCGTGCCATTTTT 58.802 42.857 1.93 0.00 38.48 1.94
1404 1689 2.433436 GGTTTCAGCTCCCGTGTAATT 58.567 47.619 0.00 0.00 0.00 1.40
1460 1745 3.194005 ACAGCCTGGTATGGAATAACG 57.806 47.619 0.00 0.00 40.15 3.18
1461 1746 2.769663 ACAGCCTGGTATGGAATAACGA 59.230 45.455 0.00 0.00 40.15 3.85
1500 1824 2.154798 CTTCCGCGTGAGGACCAAGA 62.155 60.000 4.92 0.00 40.56 3.02
1541 1883 1.647084 GCCGTATCAATTCACCGCC 59.353 57.895 0.00 0.00 0.00 6.13
1542 1884 1.931551 CCGTATCAATTCACCGCCG 59.068 57.895 0.00 0.00 0.00 6.46
1543 1885 1.275657 CGTATCAATTCACCGCCGC 59.724 57.895 0.00 0.00 0.00 6.53
1544 1886 1.151777 CGTATCAATTCACCGCCGCT 61.152 55.000 0.00 0.00 0.00 5.52
1545 1887 1.860676 GTATCAATTCACCGCCGCTA 58.139 50.000 0.00 0.00 0.00 4.26
1546 1888 2.206750 GTATCAATTCACCGCCGCTAA 58.793 47.619 0.00 0.00 0.00 3.09
1547 1889 1.299541 ATCAATTCACCGCCGCTAAG 58.700 50.000 0.00 0.00 0.00 2.18
1548 1890 1.062525 CAATTCACCGCCGCTAAGC 59.937 57.895 0.00 0.00 0.00 3.09
1559 1901 2.026301 GCTAAGCGTCGCGGATCT 59.974 61.111 12.30 0.00 0.00 2.75
1560 1902 2.011881 GCTAAGCGTCGCGGATCTC 61.012 63.158 12.30 0.00 0.00 2.75
1561 1903 1.370657 CTAAGCGTCGCGGATCTCC 60.371 63.158 12.30 0.00 0.00 3.71
1562 1904 2.060004 CTAAGCGTCGCGGATCTCCA 62.060 60.000 12.30 0.00 35.14 3.86
1563 1905 2.060004 TAAGCGTCGCGGATCTCCAG 62.060 60.000 12.30 0.00 35.14 3.86
1564 1906 4.194720 GCGTCGCGGATCTCCAGT 62.195 66.667 6.13 0.00 35.14 4.00
1565 1907 2.024871 CGTCGCGGATCTCCAGTC 59.975 66.667 6.13 0.00 35.14 3.51
1566 1908 2.761195 CGTCGCGGATCTCCAGTCA 61.761 63.158 6.13 0.00 35.14 3.41
1567 1909 1.226717 GTCGCGGATCTCCAGTCAC 60.227 63.158 6.13 0.00 35.14 3.67
1568 1910 2.105128 CGCGGATCTCCAGTCACC 59.895 66.667 0.00 0.00 35.14 4.02
1569 1911 2.418910 CGCGGATCTCCAGTCACCT 61.419 63.158 0.00 0.00 35.14 4.00
1570 1912 1.439644 GCGGATCTCCAGTCACCTC 59.560 63.158 0.00 0.00 35.14 3.85
1571 1913 2.022240 GCGGATCTCCAGTCACCTCC 62.022 65.000 0.00 0.00 35.14 4.30
1572 1914 1.729470 CGGATCTCCAGTCACCTCCG 61.729 65.000 0.00 0.00 39.58 4.63
1573 1915 1.439644 GATCTCCAGTCACCTCCGC 59.560 63.158 0.00 0.00 0.00 5.54
1605 1947 2.121538 CGATCTCCAGTCGCCTCCA 61.122 63.158 0.00 0.00 31.85 3.86
1642 1984 3.241530 TCCAGTTGCCTCTGCCGT 61.242 61.111 0.48 0.00 36.33 5.68
1643 1985 3.052082 CCAGTTGCCTCTGCCGTG 61.052 66.667 0.48 0.00 36.33 4.94
1700 2128 4.977126 GTACCGCCGCCGATCTCG 62.977 72.222 0.00 0.00 36.29 4.04
1705 2133 4.873129 GCCGCCGATCTCGCTTCA 62.873 66.667 0.00 0.00 38.18 3.02
1712 2143 1.136984 GATCTCGCTTCACCGACGT 59.863 57.895 0.00 0.00 33.12 4.34
1714 2145 1.583495 ATCTCGCTTCACCGACGTCA 61.583 55.000 17.16 0.00 33.12 4.35
1776 2222 1.282875 GTTGTTCTGAACGGCTGGC 59.717 57.895 15.18 0.00 0.00 4.85
1866 2313 4.487412 GGCGACGGTACTCCACGG 62.487 72.222 0.00 0.00 35.16 4.94
1882 2334 4.355549 TCCACGGTCTTCCTATTCCTTTA 58.644 43.478 0.00 0.00 0.00 1.85
1910 2362 5.295431 ACCAAACACATCATGTAATCACG 57.705 39.130 0.00 0.00 42.31 4.35
1913 2365 6.092122 ACCAAACACATCATGTAATCACGTAG 59.908 38.462 0.00 0.00 42.31 3.51
1924 2376 4.591498 TGTAATCACGTAGCCCCAATCTAT 59.409 41.667 0.00 0.00 0.00 1.98
1968 2420 6.054860 ACAGTGAATACATTACCTGAGCTT 57.945 37.500 0.00 0.00 0.00 3.74
2149 2609 3.369471 GGTCCACTAGCTCACATGCTAAA 60.369 47.826 0.00 0.00 43.84 1.85
2177 2710 5.105554 TGTTGCAACCTGTACATTCAGTTTT 60.106 36.000 26.14 0.00 34.02 2.43
2369 3306 4.156455 TCCTGATAAGGCAATTGACCTC 57.844 45.455 18.02 9.72 36.14 3.85
3171 4142 4.263639 ACTTCTGGATGATGGTGTGTTGAT 60.264 41.667 0.00 0.00 0.00 2.57
3223 4194 7.341030 TCAAGAACACCATCATCATTATGACT 58.659 34.615 0.00 0.00 44.79 3.41
3342 4316 2.432146 AGAGACTGCTGTTGTGAAGTCA 59.568 45.455 5.56 0.00 41.22 3.41
3534 4579 1.350071 AGCAGGGGCATCTCTCTATG 58.650 55.000 0.00 0.00 44.61 2.23
3706 4822 1.523711 CGGATGTATGGCGCAAGGT 60.524 57.895 10.83 0.00 38.28 3.50
3822 4944 1.915141 CTGCCAATGACAAGGGTCTT 58.085 50.000 0.00 0.00 44.61 3.01
3856 4979 1.093159 GACGTAGGTGTCAGATCCGT 58.907 55.000 0.00 0.00 38.75 4.69
3990 5139 8.747538 TCATCAGTGGCGTGTATATATACTAT 57.252 34.615 20.80 0.58 34.41 2.12
3992 5141 6.792326 TCAGTGGCGTGTATATATACTATGC 58.208 40.000 20.80 20.41 34.41 3.14
4039 5188 7.583230 CCCTCGTAGTTTATAGCAGTAACTAG 58.417 42.308 0.00 0.00 35.64 2.57
4079 5228 7.916077 TTCTATATCTAAATAGCTAGCCCCC 57.084 40.000 12.13 0.00 30.79 5.40
4080 5229 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
4081 5230 5.959583 ATATCTAAATAGCTAGCCCCCAC 57.040 43.478 12.13 0.00 0.00 4.61
4082 5231 3.346146 TCTAAATAGCTAGCCCCCACT 57.654 47.619 12.13 0.00 0.00 4.00
4083 5232 4.480777 TCTAAATAGCTAGCCCCCACTA 57.519 45.455 12.13 0.00 0.00 2.74
4084 5233 4.823107 TCTAAATAGCTAGCCCCCACTAA 58.177 43.478 12.13 0.00 0.00 2.24
4085 5234 3.859061 AAATAGCTAGCCCCCACTAAC 57.141 47.619 12.13 0.00 0.00 2.34
4086 5235 1.730851 ATAGCTAGCCCCCACTAACC 58.269 55.000 12.13 0.00 0.00 2.85
4087 5236 0.640495 TAGCTAGCCCCCACTAACCT 59.360 55.000 12.13 0.00 0.00 3.50
4088 5237 0.640495 AGCTAGCCCCCACTAACCTA 59.360 55.000 12.13 0.00 0.00 3.08
4089 5238 1.223337 AGCTAGCCCCCACTAACCTAT 59.777 52.381 12.13 0.00 0.00 2.57
4090 5239 2.055579 GCTAGCCCCCACTAACCTATT 58.944 52.381 2.29 0.00 0.00 1.73
4091 5240 2.442126 GCTAGCCCCCACTAACCTATTT 59.558 50.000 2.29 0.00 0.00 1.40
4092 5241 3.496337 GCTAGCCCCCACTAACCTATTTC 60.496 52.174 2.29 0.00 0.00 2.17
4093 5242 2.859951 AGCCCCCACTAACCTATTTCT 58.140 47.619 0.00 0.00 0.00 2.52
4094 5243 2.778270 AGCCCCCACTAACCTATTTCTC 59.222 50.000 0.00 0.00 0.00 2.87
4095 5244 2.778270 GCCCCCACTAACCTATTTCTCT 59.222 50.000 0.00 0.00 0.00 3.10
4096 5245 3.181453 GCCCCCACTAACCTATTTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
4097 5246 4.037927 CCCCCACTAACCTATTTCTCTCA 58.962 47.826 0.00 0.00 0.00 3.27
4098 5247 4.473559 CCCCCACTAACCTATTTCTCTCAA 59.526 45.833 0.00 0.00 0.00 3.02
4099 5248 5.429130 CCCCACTAACCTATTTCTCTCAAC 58.571 45.833 0.00 0.00 0.00 3.18
4100 5249 5.045869 CCCCACTAACCTATTTCTCTCAACA 60.046 44.000 0.00 0.00 0.00 3.33
4101 5250 6.353082 CCCCACTAACCTATTTCTCTCAACAT 60.353 42.308 0.00 0.00 0.00 2.71
4102 5251 6.540189 CCCACTAACCTATTTCTCTCAACATG 59.460 42.308 0.00 0.00 0.00 3.21
4103 5252 6.037610 CCACTAACCTATTTCTCTCAACATGC 59.962 42.308 0.00 0.00 0.00 4.06
4104 5253 6.595326 CACTAACCTATTTCTCTCAACATGCA 59.405 38.462 0.00 0.00 0.00 3.96
4105 5254 7.119699 CACTAACCTATTTCTCTCAACATGCAA 59.880 37.037 0.00 0.00 0.00 4.08
4106 5255 6.506500 AACCTATTTCTCTCAACATGCAAG 57.493 37.500 0.00 0.00 0.00 4.01
4107 5256 4.397417 ACCTATTTCTCTCAACATGCAAGC 59.603 41.667 0.00 0.00 0.00 4.01
4108 5257 4.397103 CCTATTTCTCTCAACATGCAAGCA 59.603 41.667 0.00 0.00 0.00 3.91
4109 5258 5.067413 CCTATTTCTCTCAACATGCAAGCAT 59.933 40.000 0.86 0.86 37.08 3.79
4121 5270 3.070476 TGCAAGCATGACACCTTATCA 57.930 42.857 0.00 0.00 0.00 2.15
4122 5271 3.419943 TGCAAGCATGACACCTTATCAA 58.580 40.909 0.00 0.00 0.00 2.57
4123 5272 3.441222 TGCAAGCATGACACCTTATCAAG 59.559 43.478 0.00 0.00 0.00 3.02
4124 5273 3.733077 GCAAGCATGACACCTTATCAAGC 60.733 47.826 0.00 0.00 40.29 4.01
4125 5274 3.354948 AGCATGACACCTTATCAAGCA 57.645 42.857 0.00 0.00 41.96 3.91
4126 5275 3.689347 AGCATGACACCTTATCAAGCAA 58.311 40.909 0.00 0.00 41.96 3.91
4127 5276 3.441572 AGCATGACACCTTATCAAGCAAC 59.558 43.478 0.00 0.00 41.96 4.17
4128 5277 3.191162 GCATGACACCTTATCAAGCAACA 59.809 43.478 0.00 0.00 39.86 3.33
4129 5278 4.142315 GCATGACACCTTATCAAGCAACAT 60.142 41.667 0.00 0.00 39.86 2.71
4130 5279 5.337554 CATGACACCTTATCAAGCAACATG 58.662 41.667 0.00 0.00 0.00 3.21
4131 5280 3.191162 TGACACCTTATCAAGCAACATGC 59.809 43.478 0.00 0.00 45.46 4.06
4145 5294 4.176271 GCAACATGCATTAGAAAAGACCC 58.824 43.478 0.00 0.00 44.26 4.46
4146 5295 4.321899 GCAACATGCATTAGAAAAGACCCA 60.322 41.667 0.00 0.00 44.26 4.51
4147 5296 5.163513 CAACATGCATTAGAAAAGACCCAC 58.836 41.667 0.00 0.00 0.00 4.61
4148 5297 3.440173 ACATGCATTAGAAAAGACCCACG 59.560 43.478 0.00 0.00 0.00 4.94
4149 5298 3.134574 TGCATTAGAAAAGACCCACGT 57.865 42.857 0.00 0.00 0.00 4.49
4150 5299 3.071479 TGCATTAGAAAAGACCCACGTC 58.929 45.455 0.00 0.00 39.50 4.34
4151 5300 3.071479 GCATTAGAAAAGACCCACGTCA 58.929 45.455 0.00 0.00 41.87 4.35
4152 5301 3.500680 GCATTAGAAAAGACCCACGTCAA 59.499 43.478 0.00 0.00 41.87 3.18
4153 5302 4.612939 GCATTAGAAAAGACCCACGTCAAC 60.613 45.833 0.00 0.00 41.87 3.18
4154 5303 2.702592 AGAAAAGACCCACGTCAACA 57.297 45.000 0.00 0.00 41.87 3.33
4155 5304 3.208747 AGAAAAGACCCACGTCAACAT 57.791 42.857 0.00 0.00 41.87 2.71
4156 5305 3.551846 AGAAAAGACCCACGTCAACATT 58.448 40.909 0.00 0.00 41.87 2.71
4157 5306 3.564225 AGAAAAGACCCACGTCAACATTC 59.436 43.478 0.00 0.00 41.87 2.67
4158 5307 2.631160 AAGACCCACGTCAACATTCA 57.369 45.000 0.00 0.00 41.87 2.57
4159 5308 2.631160 AGACCCACGTCAACATTCAA 57.369 45.000 0.00 0.00 41.87 2.69
4160 5309 3.140325 AGACCCACGTCAACATTCAAT 57.860 42.857 0.00 0.00 41.87 2.57
4161 5310 2.813754 AGACCCACGTCAACATTCAATG 59.186 45.455 0.00 0.00 41.87 2.82
4162 5311 2.811431 GACCCACGTCAACATTCAATGA 59.189 45.455 3.79 0.00 38.99 2.57
4163 5312 2.813754 ACCCACGTCAACATTCAATGAG 59.186 45.455 3.79 0.00 0.00 2.90
4164 5313 2.813754 CCCACGTCAACATTCAATGAGT 59.186 45.455 3.79 0.00 0.00 3.41
4165 5314 3.120199 CCCACGTCAACATTCAATGAGTC 60.120 47.826 3.79 0.00 0.00 3.36
4166 5315 3.498018 CCACGTCAACATTCAATGAGTCA 59.502 43.478 3.79 0.00 0.00 3.41
4167 5316 4.154737 CCACGTCAACATTCAATGAGTCAT 59.845 41.667 3.79 0.00 0.00 3.06
4168 5317 5.351189 CCACGTCAACATTCAATGAGTCATA 59.649 40.000 5.94 0.00 0.00 2.15
4169 5318 6.456047 CCACGTCAACATTCAATGAGTCATAG 60.456 42.308 5.94 0.00 0.00 2.23
4170 5319 5.582269 ACGTCAACATTCAATGAGTCATAGG 59.418 40.000 5.94 2.18 0.00 2.57
4171 5320 5.812127 CGTCAACATTCAATGAGTCATAGGA 59.188 40.000 5.94 4.71 0.00 2.94
4172 5321 6.313658 CGTCAACATTCAATGAGTCATAGGAA 59.686 38.462 17.56 17.56 0.00 3.36
4173 5322 7.148423 CGTCAACATTCAATGAGTCATAGGAAA 60.148 37.037 18.60 7.65 0.00 3.13
4174 5323 8.514594 GTCAACATTCAATGAGTCATAGGAAAA 58.485 33.333 18.60 6.26 0.00 2.29
4175 5324 8.733458 TCAACATTCAATGAGTCATAGGAAAAG 58.267 33.333 18.60 16.45 0.00 2.27
4176 5325 8.733458 CAACATTCAATGAGTCATAGGAAAAGA 58.267 33.333 18.60 3.03 0.00 2.52
4177 5326 9.471702 AACATTCAATGAGTCATAGGAAAAGAT 57.528 29.630 18.60 10.12 0.00 2.40
4178 5327 9.471702 ACATTCAATGAGTCATAGGAAAAGATT 57.528 29.630 18.60 5.09 0.00 2.40
4188 5337 9.793259 AGTCATAGGAAAAGATTAACTTCAACA 57.207 29.630 0.00 0.00 37.93 3.33
4191 5340 9.294030 CATAGGAAAAGATTAACTTCAACATGC 57.706 33.333 0.00 0.00 37.93 4.06
4192 5341 7.288810 AGGAAAAGATTAACTTCAACATGCA 57.711 32.000 0.00 0.00 37.93 3.96
4193 5342 7.725251 AGGAAAAGATTAACTTCAACATGCAA 58.275 30.769 0.00 0.00 37.93 4.08
4194 5343 8.203485 AGGAAAAGATTAACTTCAACATGCAAA 58.797 29.630 0.00 0.00 37.93 3.68
4195 5344 8.275632 GGAAAAGATTAACTTCAACATGCAAAC 58.724 33.333 0.00 0.00 37.93 2.93
4196 5345 8.715191 AAAAGATTAACTTCAACATGCAAACA 57.285 26.923 0.00 0.00 37.93 2.83
4197 5346 8.891671 AAAGATTAACTTCAACATGCAAACAT 57.108 26.923 0.00 0.00 37.93 2.71
4198 5347 8.301730 AAGATTAACTTCAACATGCAAACATG 57.698 30.769 4.55 4.55 46.05 3.21
4199 5348 7.095523 AAGATTAACTTCAACATGCAAACATGC 60.096 33.333 5.97 0.00 45.24 4.06
4292 5441 9.046296 AGTTTTAGCTCACATATTATTTCTCCG 57.954 33.333 0.00 0.00 0.00 4.63
4293 5442 9.042008 GTTTTAGCTCACATATTATTTCTCCGA 57.958 33.333 0.00 0.00 0.00 4.55
4294 5443 9.607988 TTTTAGCTCACATATTATTTCTCCGAA 57.392 29.630 0.00 0.00 0.00 4.30
4295 5444 9.778741 TTTAGCTCACATATTATTTCTCCGAAT 57.221 29.630 0.00 0.00 0.00 3.34
4298 5447 9.950496 AGCTCACATATTATTTCTCCGAATATT 57.050 29.630 0.00 0.00 0.00 1.28
4352 5501 8.566008 AGAAATGTATTGCAAAATATTCTCGC 57.434 30.769 1.71 0.00 0.00 5.03
4353 5502 8.190122 AGAAATGTATTGCAAAATATTCTCGCA 58.810 29.630 1.71 3.09 0.00 5.10
4354 5503 8.700722 AAATGTATTGCAAAATATTCTCGCAA 57.299 26.923 16.70 16.70 45.70 4.85
4355 5504 7.684062 ATGTATTGCAAAATATTCTCGCAAC 57.316 32.000 16.70 9.80 44.57 4.17
4356 5505 6.616017 TGTATTGCAAAATATTCTCGCAACA 58.384 32.000 16.70 11.60 44.57 3.33
4357 5506 7.087007 TGTATTGCAAAATATTCTCGCAACAA 58.913 30.769 16.70 8.99 44.57 2.83
4358 5507 5.820926 TTGCAAAATATTCTCGCAACAAC 57.179 34.783 12.54 0.00 37.64 3.32
4359 5508 3.911365 TGCAAAATATTCTCGCAACAACG 59.089 39.130 4.44 0.00 0.00 4.10
4360 5509 3.911964 GCAAAATATTCTCGCAACAACGT 59.088 39.130 0.00 0.00 0.00 3.99
4361 5510 4.201391 GCAAAATATTCTCGCAACAACGTG 60.201 41.667 0.00 0.00 0.00 4.49
4362 5511 2.806288 ATATTCTCGCAACAACGTGC 57.194 45.000 0.00 0.00 41.32 5.34
4369 5518 3.669344 CAACAACGTGCGGGGCAT 61.669 61.111 0.00 0.00 41.91 4.40
4370 5519 3.361977 AACAACGTGCGGGGCATC 61.362 61.111 0.00 0.00 41.91 3.91
4376 5525 2.279517 GTGCGGGGCATCGTCTAG 60.280 66.667 0.00 0.00 41.91 2.43
4383 5532 1.138266 GGGGCATCGTCTAGTGCTAAA 59.862 52.381 3.39 0.00 41.04 1.85
4388 5537 4.811557 GGCATCGTCTAGTGCTAAAGAATT 59.188 41.667 3.39 0.00 41.04 2.17
4399 5548 5.067023 AGTGCTAAAGAATTTATCAGGCTGC 59.933 40.000 10.34 0.00 40.24 5.25
4416 5565 3.609103 CTGCACCACAGTACAAACTTC 57.391 47.619 0.00 0.00 41.86 3.01
4427 5576 7.255520 CCACAGTACAAACTTCTAGTGTAGACT 60.256 40.741 0.00 0.00 33.84 3.24
4449 5598 7.177216 AGACTTGCAAATGGAGATGATAAAACA 59.823 33.333 0.00 0.00 0.00 2.83
4452 5601 6.397272 TGCAAATGGAGATGATAAAACAACC 58.603 36.000 0.00 0.00 0.00 3.77
4454 5603 7.099120 GCAAATGGAGATGATAAAACAACCTT 58.901 34.615 0.00 0.00 0.00 3.50
4491 5640 2.708861 TGTCACTACACCCAATCCAAGT 59.291 45.455 0.00 0.00 0.00 3.16
4497 5646 6.670464 TCACTACACCCAATCCAAGTATAGAA 59.330 38.462 0.00 0.00 0.00 2.10
4564 5715 9.533831 TCAAAGCTAAGAAAAGGAAATTAGGAT 57.466 29.630 0.00 0.00 0.00 3.24
4578 5729 6.410504 GGAAATTAGGATTAGCCCAAGTAGGT 60.411 42.308 0.00 0.00 37.37 3.08
4579 5730 6.592207 AATTAGGATTAGCCCAAGTAGGTT 57.408 37.500 0.00 0.00 37.37 3.50
4604 5759 1.209128 CTTGGGCTACGATAACGCAG 58.791 55.000 0.00 0.00 43.96 5.18
4625 5780 1.927174 CACGAGAACATCCCGATTCAC 59.073 52.381 0.00 0.00 0.00 3.18
4668 5823 2.029623 GCACAAGATGGCTTCATGGAT 58.970 47.619 9.90 0.00 30.14 3.41
4669 5824 2.223735 GCACAAGATGGCTTCATGGATG 60.224 50.000 9.90 2.31 30.14 3.51
4677 5832 1.213926 GGCTTCATGGATGGTCCTTCT 59.786 52.381 4.85 0.00 37.46 2.85
4697 5852 7.072076 TCCTTCTACCTTCCCATAATTTACTCC 59.928 40.741 0.00 0.00 0.00 3.85
4701 5856 5.516044 ACCTTCCCATAATTTACTCCAACC 58.484 41.667 0.00 0.00 0.00 3.77
4725 5880 7.233757 ACCACCCTATATCTAATCTTCACACTC 59.766 40.741 0.00 0.00 0.00 3.51
4756 5911 7.831691 TGCTCTATCTAATGCTACTTCTTCT 57.168 36.000 0.00 0.00 0.00 2.85
4759 5914 9.010029 GCTCTATCTAATGCTACTTCTTCTACT 57.990 37.037 0.00 0.00 0.00 2.57
4763 5918 7.939784 TCTAATGCTACTTCTTCTACTCACA 57.060 36.000 0.00 0.00 0.00 3.58
4833 6019 6.369629 TCCTCTTCTCCTTCTCATTAGTAGG 58.630 44.000 0.00 0.00 40.70 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 4.980805 GCACCACCGACGCCAGAA 62.981 66.667 0.00 0.00 0.00 3.02
124 125 4.681978 GGGGCAGCGAGTTGACGT 62.682 66.667 0.00 0.00 35.59 4.34
162 163 2.400158 CGAAGACGAGCTCCTCCGT 61.400 63.158 8.47 2.41 42.66 4.69
236 447 0.904865 ATGAAGAGGAGGTGGCACGA 60.905 55.000 12.17 0.00 0.00 4.35
239 450 0.252881 AGGATGAAGAGGAGGTGGCA 60.253 55.000 0.00 0.00 0.00 4.92
251 462 4.467084 GGGCACGCGGAGGATGAA 62.467 66.667 12.47 0.00 0.00 2.57
403 648 3.871485 TGCCATTTTCACAAACAGCTTT 58.129 36.364 0.00 0.00 0.00 3.51
422 667 5.104735 TCCTCCTCTCTTTATCTTTCCTTGC 60.105 44.000 0.00 0.00 0.00 4.01
426 671 6.800072 TCTTCCTCCTCTCTTTATCTTTCC 57.200 41.667 0.00 0.00 0.00 3.13
470 715 7.224297 ACTGTTCAGTTGACCATTATTACAGT 58.776 34.615 0.00 0.00 38.05 3.55
493 738 9.052759 AGTTTAGACGATTTAAACATGTTGACT 57.947 29.630 12.82 6.70 41.31 3.41
531 776 9.797556 ATTTTGTGACTAAAAACTACCACTTTC 57.202 29.630 0.00 0.00 33.67 2.62
595 840 1.648504 GCGTCCCACATAACTACCAC 58.351 55.000 0.00 0.00 0.00 4.16
604 849 4.404098 GGGGTTCGCGTCCCACAT 62.404 66.667 30.86 0.00 46.26 3.21
695 943 0.029567 CACGGTCTATCTCGCTGTCC 59.970 60.000 0.00 0.00 0.00 4.02
918 1185 6.143919 GCCTATTTTATCACGCTTTTTATGCC 59.856 38.462 0.00 0.00 0.00 4.40
938 1205 0.757188 CACCTGAGTCCTCCGCCTAT 60.757 60.000 0.00 0.00 0.00 2.57
939 1206 1.379977 CACCTGAGTCCTCCGCCTA 60.380 63.158 0.00 0.00 0.00 3.93
1281 1566 4.729746 GCGTCGAAAATTAATTCCTCACCC 60.730 45.833 0.10 0.00 0.00 4.61
1324 1609 1.204704 CACTGTATTCGGGAGACAGCA 59.795 52.381 10.91 0.00 43.60 4.41
1404 1689 4.024725 CGATTTTGTGAAGGACGGTTTACA 60.025 41.667 0.00 0.00 0.00 2.41
1542 1884 2.011881 GAGATCCGCGACGCTTAGC 61.012 63.158 19.02 8.34 0.00 3.09
1543 1885 1.370657 GGAGATCCGCGACGCTTAG 60.371 63.158 19.02 6.66 0.00 2.18
1544 1886 2.060004 CTGGAGATCCGCGACGCTTA 62.060 60.000 19.02 5.82 39.43 3.09
1545 1887 3.417275 CTGGAGATCCGCGACGCTT 62.417 63.158 19.02 2.10 39.43 4.68
1546 1888 3.893763 CTGGAGATCCGCGACGCT 61.894 66.667 19.02 0.00 39.43 5.07
1547 1889 4.194720 ACTGGAGATCCGCGACGC 62.195 66.667 8.23 10.49 39.43 5.19
1548 1890 2.024871 GACTGGAGATCCGCGACG 59.975 66.667 8.23 0.00 39.43 5.12
1549 1891 1.226717 GTGACTGGAGATCCGCGAC 60.227 63.158 8.23 0.00 39.43 5.19
1550 1892 2.415608 GGTGACTGGAGATCCGCGA 61.416 63.158 8.23 0.00 39.43 5.87
1551 1893 2.105128 GGTGACTGGAGATCCGCG 59.895 66.667 0.00 0.00 39.43 6.46
1552 1894 1.439644 GAGGTGACTGGAGATCCGC 59.560 63.158 0.00 0.00 44.43 5.54
1553 1895 1.729470 CGGAGGTGACTGGAGATCCG 61.729 65.000 0.00 0.00 44.43 4.18
1554 1896 2.022240 GCGGAGGTGACTGGAGATCC 62.022 65.000 0.00 0.00 44.43 3.36
1555 1897 1.439644 GCGGAGGTGACTGGAGATC 59.560 63.158 0.00 0.00 44.43 2.75
1556 1898 2.060980 GGCGGAGGTGACTGGAGAT 61.061 63.158 0.00 0.00 44.43 2.75
1557 1899 2.680352 GGCGGAGGTGACTGGAGA 60.680 66.667 0.00 0.00 44.43 3.71
1558 1900 4.135153 CGGCGGAGGTGACTGGAG 62.135 72.222 0.00 0.00 44.43 3.86
1563 1905 4.803426 CTCAGCGGCGGAGGTGAC 62.803 72.222 20.42 0.00 42.80 3.67
1672 2020 4.783734 GCGGTACCCACGACGACC 62.784 72.222 6.25 0.00 0.00 4.79
1700 2128 2.100631 CCCATGACGTCGGTGAAGC 61.101 63.158 18.90 0.00 0.00 3.86
1705 2133 4.760047 GCTGCCCATGACGTCGGT 62.760 66.667 11.62 0.00 0.00 4.69
1755 2199 2.251371 GCCGTTCAGAACAACGCC 59.749 61.111 13.82 0.00 46.36 5.68
1776 2222 2.609459 CCCTTGACGGAAAATGAGATCG 59.391 50.000 0.00 0.00 33.16 3.69
1866 2313 5.579904 GGTTCACGTAAAGGAATAGGAAGAC 59.420 44.000 0.00 0.00 0.00 3.01
1882 2334 2.948979 ACATGATGTGTTTGGTTCACGT 59.051 40.909 0.00 0.00 38.01 4.49
1910 2362 5.291905 ACACTGTAATAGATTGGGGCTAC 57.708 43.478 0.00 0.00 0.00 3.58
1913 2365 6.534634 AGAATACACTGTAATAGATTGGGGC 58.465 40.000 0.00 0.00 0.00 5.80
1924 2376 9.203421 CACTGTTGTAATGAGAATACACTGTAA 57.797 33.333 0.00 0.00 33.22 2.41
2104 2558 6.147821 ACCTTAACAAGAATGAACATCTGACG 59.852 38.462 0.00 0.00 0.00 4.35
2149 2609 2.356665 TGTACAGGTTGCAACATGGT 57.643 45.000 38.07 28.35 44.34 3.55
2266 3181 1.677217 GGAGCAAGTCGGCAGAAAGAT 60.677 52.381 0.00 0.00 35.83 2.40
2842 3781 7.097192 ACTAACATCTTCTCGCTGTCAAATAA 58.903 34.615 0.00 0.00 0.00 1.40
2991 3952 8.673626 AACAAATAAAGCAATTACGATCAGTG 57.326 30.769 0.00 0.00 0.00 3.66
3171 4142 1.342672 GGTCCGGCCTTTCCCATCTA 61.343 60.000 0.00 0.00 0.00 1.98
3223 4194 1.831106 TGCTCCGCTCCTAGATTTGAA 59.169 47.619 0.00 0.00 0.00 2.69
3342 4316 5.567138 GCATTAAGCATGTTTCTACTGGT 57.433 39.130 0.00 0.00 44.79 4.00
3642 4739 7.381139 GCATGGATGGTTACCAAAATATAAACG 59.619 37.037 8.63 0.00 40.93 3.60
3689 4805 0.179045 AGACCTTGCGCCATACATCC 60.179 55.000 4.18 0.00 0.00 3.51
3706 4822 2.703536 TCAGCAACCACCTCTTTACAGA 59.296 45.455 0.00 0.00 0.00 3.41
3822 4944 6.039717 ACACCTACGTCACTACTTCAAACTTA 59.960 38.462 0.00 0.00 0.00 2.24
3856 4979 1.234821 GGAGTTGGATTGTTGCGTCA 58.765 50.000 0.00 0.00 0.00 4.35
3990 5139 1.805943 CCTGTTGAATCATCACGTGCA 59.194 47.619 11.67 0.00 34.61 4.57
3992 5141 2.160219 CCACCTGTTGAATCATCACGTG 59.840 50.000 9.94 9.94 34.61 4.49
4053 5202 8.769359 GGGGGCTAGCTATTTAGATATAGAAAA 58.231 37.037 15.72 0.00 31.10 2.29
4054 5203 7.904564 TGGGGGCTAGCTATTTAGATATAGAAA 59.095 37.037 15.72 0.00 31.10 2.52
4055 5204 7.344871 GTGGGGGCTAGCTATTTAGATATAGAA 59.655 40.741 15.72 0.00 31.10 2.10
4056 5205 6.839657 GTGGGGGCTAGCTATTTAGATATAGA 59.160 42.308 15.72 0.00 31.10 1.98
4057 5206 6.841755 AGTGGGGGCTAGCTATTTAGATATAG 59.158 42.308 15.72 0.00 0.00 1.31
4058 5207 6.753134 AGTGGGGGCTAGCTATTTAGATATA 58.247 40.000 15.72 0.00 0.00 0.86
4059 5208 5.604752 AGTGGGGGCTAGCTATTTAGATAT 58.395 41.667 15.72 0.00 0.00 1.63
4060 5209 5.024803 AGTGGGGGCTAGCTATTTAGATA 57.975 43.478 15.72 0.00 0.00 1.98
4061 5210 3.875571 AGTGGGGGCTAGCTATTTAGAT 58.124 45.455 15.72 0.00 0.00 1.98
4062 5211 3.346146 AGTGGGGGCTAGCTATTTAGA 57.654 47.619 15.72 0.00 0.00 2.10
4063 5212 4.262938 GGTTAGTGGGGGCTAGCTATTTAG 60.263 50.000 15.72 0.00 0.00 1.85
4064 5213 3.649502 GGTTAGTGGGGGCTAGCTATTTA 59.350 47.826 15.72 0.00 0.00 1.40
4065 5214 2.442126 GGTTAGTGGGGGCTAGCTATTT 59.558 50.000 15.72 0.00 0.00 1.40
4066 5215 2.055579 GGTTAGTGGGGGCTAGCTATT 58.944 52.381 15.72 0.00 0.00 1.73
4067 5216 1.223337 AGGTTAGTGGGGGCTAGCTAT 59.777 52.381 15.72 0.00 0.00 2.97
4068 5217 0.640495 AGGTTAGTGGGGGCTAGCTA 59.360 55.000 15.72 0.00 0.00 3.32
4069 5218 0.640495 TAGGTTAGTGGGGGCTAGCT 59.360 55.000 15.72 0.00 0.00 3.32
4070 5219 1.730851 ATAGGTTAGTGGGGGCTAGC 58.269 55.000 6.04 6.04 0.00 3.42
4071 5220 3.974642 AGAAATAGGTTAGTGGGGGCTAG 59.025 47.826 0.00 0.00 0.00 3.42
4072 5221 3.971971 GAGAAATAGGTTAGTGGGGGCTA 59.028 47.826 0.00 0.00 0.00 3.93
4073 5222 2.778270 GAGAAATAGGTTAGTGGGGGCT 59.222 50.000 0.00 0.00 0.00 5.19
4074 5223 2.778270 AGAGAAATAGGTTAGTGGGGGC 59.222 50.000 0.00 0.00 0.00 5.80
4075 5224 4.037927 TGAGAGAAATAGGTTAGTGGGGG 58.962 47.826 0.00 0.00 0.00 5.40
4076 5225 5.045869 TGTTGAGAGAAATAGGTTAGTGGGG 60.046 44.000 0.00 0.00 0.00 4.96
4077 5226 6.049955 TGTTGAGAGAAATAGGTTAGTGGG 57.950 41.667 0.00 0.00 0.00 4.61
4078 5227 6.037610 GCATGTTGAGAGAAATAGGTTAGTGG 59.962 42.308 0.00 0.00 0.00 4.00
4079 5228 6.595326 TGCATGTTGAGAGAAATAGGTTAGTG 59.405 38.462 0.00 0.00 0.00 2.74
4080 5229 6.711277 TGCATGTTGAGAGAAATAGGTTAGT 58.289 36.000 0.00 0.00 0.00 2.24
4081 5230 7.615582 TTGCATGTTGAGAGAAATAGGTTAG 57.384 36.000 0.00 0.00 0.00 2.34
4082 5231 6.094048 GCTTGCATGTTGAGAGAAATAGGTTA 59.906 38.462 1.14 0.00 0.00 2.85
4083 5232 5.105997 GCTTGCATGTTGAGAGAAATAGGTT 60.106 40.000 1.14 0.00 0.00 3.50
4084 5233 4.397417 GCTTGCATGTTGAGAGAAATAGGT 59.603 41.667 1.14 0.00 0.00 3.08
4085 5234 4.397103 TGCTTGCATGTTGAGAGAAATAGG 59.603 41.667 1.14 0.00 0.00 2.57
4086 5235 5.556355 TGCTTGCATGTTGAGAGAAATAG 57.444 39.130 1.14 0.00 0.00 1.73
4087 5236 5.648960 TCATGCTTGCATGTTGAGAGAAATA 59.351 36.000 27.80 7.94 34.39 1.40
4088 5237 4.461431 TCATGCTTGCATGTTGAGAGAAAT 59.539 37.500 27.80 0.00 34.39 2.17
4089 5238 3.822167 TCATGCTTGCATGTTGAGAGAAA 59.178 39.130 27.80 8.99 34.39 2.52
4090 5239 3.189910 GTCATGCTTGCATGTTGAGAGAA 59.810 43.478 27.80 9.59 34.39 2.87
4091 5240 2.745821 GTCATGCTTGCATGTTGAGAGA 59.254 45.455 27.80 10.21 34.39 3.10
4092 5241 2.486592 TGTCATGCTTGCATGTTGAGAG 59.513 45.455 27.80 7.73 34.39 3.20
4093 5242 2.227149 GTGTCATGCTTGCATGTTGAGA 59.773 45.455 27.80 11.67 34.39 3.27
4094 5243 2.592194 GTGTCATGCTTGCATGTTGAG 58.408 47.619 27.80 8.97 34.39 3.02
4095 5244 1.270274 GGTGTCATGCTTGCATGTTGA 59.730 47.619 27.80 12.95 34.39 3.18
4096 5245 1.271379 AGGTGTCATGCTTGCATGTTG 59.729 47.619 27.80 11.01 34.39 3.33
4097 5246 1.624336 AGGTGTCATGCTTGCATGTT 58.376 45.000 27.80 12.09 34.39 2.71
4098 5247 1.624336 AAGGTGTCATGCTTGCATGT 58.376 45.000 27.80 11.44 34.39 3.21
4099 5248 3.379057 TGATAAGGTGTCATGCTTGCATG 59.621 43.478 24.70 24.70 0.00 4.06
4100 5249 3.623703 TGATAAGGTGTCATGCTTGCAT 58.376 40.909 1.81 1.81 0.00 3.96
4101 5250 3.070476 TGATAAGGTGTCATGCTTGCA 57.930 42.857 0.00 0.00 0.00 4.08
4102 5251 3.733077 GCTTGATAAGGTGTCATGCTTGC 60.733 47.826 6.71 0.00 41.13 4.01
4103 5252 3.441222 TGCTTGATAAGGTGTCATGCTTG 59.559 43.478 12.94 0.00 43.32 4.01
4104 5253 3.689347 TGCTTGATAAGGTGTCATGCTT 58.311 40.909 12.94 0.00 43.32 3.91
4105 5254 3.354948 TGCTTGATAAGGTGTCATGCT 57.645 42.857 12.94 0.00 43.32 3.79
4106 5255 3.191162 TGTTGCTTGATAAGGTGTCATGC 59.809 43.478 6.95 6.95 43.26 4.06
4107 5256 5.337554 CATGTTGCTTGATAAGGTGTCATG 58.662 41.667 0.00 0.00 0.00 3.07
4108 5257 4.142315 GCATGTTGCTTGATAAGGTGTCAT 60.142 41.667 0.00 0.00 40.96 3.06
4109 5258 3.191162 GCATGTTGCTTGATAAGGTGTCA 59.809 43.478 0.00 0.00 40.96 3.58
4110 5259 3.191162 TGCATGTTGCTTGATAAGGTGTC 59.809 43.478 0.75 0.00 45.31 3.67
4111 5260 3.156293 TGCATGTTGCTTGATAAGGTGT 58.844 40.909 0.75 0.00 45.31 4.16
4112 5261 3.853831 TGCATGTTGCTTGATAAGGTG 57.146 42.857 0.75 0.00 45.31 4.00
4113 5262 5.887598 TCTAATGCATGTTGCTTGATAAGGT 59.112 36.000 0.00 0.00 45.31 3.50
4114 5263 6.381481 TCTAATGCATGTTGCTTGATAAGG 57.619 37.500 0.00 0.00 45.31 2.69
4115 5264 8.692110 TTTTCTAATGCATGTTGCTTGATAAG 57.308 30.769 0.00 0.00 45.31 1.73
4116 5265 8.522003 TCTTTTCTAATGCATGTTGCTTGATAA 58.478 29.630 0.00 0.00 45.31 1.75
4117 5266 7.970061 GTCTTTTCTAATGCATGTTGCTTGATA 59.030 33.333 0.00 0.00 45.31 2.15
4118 5267 6.810182 GTCTTTTCTAATGCATGTTGCTTGAT 59.190 34.615 0.00 0.00 45.31 2.57
4119 5268 6.151691 GTCTTTTCTAATGCATGTTGCTTGA 58.848 36.000 0.00 0.00 45.31 3.02
4120 5269 5.346822 GGTCTTTTCTAATGCATGTTGCTTG 59.653 40.000 0.00 0.00 45.31 4.01
4121 5270 5.473039 GGTCTTTTCTAATGCATGTTGCTT 58.527 37.500 0.00 0.00 45.31 3.91
4122 5271 4.082026 GGGTCTTTTCTAATGCATGTTGCT 60.082 41.667 0.00 0.00 45.31 3.91
4123 5272 4.176271 GGGTCTTTTCTAATGCATGTTGC 58.824 43.478 0.00 0.00 45.29 4.17
4124 5273 5.163513 GTGGGTCTTTTCTAATGCATGTTG 58.836 41.667 0.00 0.00 0.00 3.33
4125 5274 4.082787 CGTGGGTCTTTTCTAATGCATGTT 60.083 41.667 0.00 0.00 0.00 2.71
4126 5275 3.440173 CGTGGGTCTTTTCTAATGCATGT 59.560 43.478 0.00 0.00 0.00 3.21
4127 5276 3.440173 ACGTGGGTCTTTTCTAATGCATG 59.560 43.478 0.00 0.00 0.00 4.06
4128 5277 3.686016 ACGTGGGTCTTTTCTAATGCAT 58.314 40.909 0.00 0.00 0.00 3.96
4129 5278 3.071479 GACGTGGGTCTTTTCTAATGCA 58.929 45.455 0.00 0.00 40.15 3.96
4130 5279 3.071479 TGACGTGGGTCTTTTCTAATGC 58.929 45.455 0.00 0.00 43.79 3.56
4131 5280 4.513692 TGTTGACGTGGGTCTTTTCTAATG 59.486 41.667 0.00 0.00 43.79 1.90
4132 5281 4.710324 TGTTGACGTGGGTCTTTTCTAAT 58.290 39.130 0.00 0.00 43.79 1.73
4133 5282 4.139859 TGTTGACGTGGGTCTTTTCTAA 57.860 40.909 0.00 0.00 43.79 2.10
4134 5283 3.823281 TGTTGACGTGGGTCTTTTCTA 57.177 42.857 0.00 0.00 43.79 2.10
4135 5284 2.702592 TGTTGACGTGGGTCTTTTCT 57.297 45.000 0.00 0.00 43.79 2.52
4136 5285 3.314080 TGAATGTTGACGTGGGTCTTTTC 59.686 43.478 0.00 0.00 43.79 2.29
4137 5286 3.283751 TGAATGTTGACGTGGGTCTTTT 58.716 40.909 0.00 0.00 43.79 2.27
4138 5287 2.925724 TGAATGTTGACGTGGGTCTTT 58.074 42.857 0.00 0.00 43.79 2.52
4139 5288 2.631160 TGAATGTTGACGTGGGTCTT 57.369 45.000 0.00 0.00 43.79 3.01
4140 5289 2.631160 TTGAATGTTGACGTGGGTCT 57.369 45.000 0.00 0.00 43.79 3.85
4141 5290 2.811431 TCATTGAATGTTGACGTGGGTC 59.189 45.455 4.93 0.00 43.71 4.46
4142 5291 2.813754 CTCATTGAATGTTGACGTGGGT 59.186 45.455 4.93 0.00 0.00 4.51
4143 5292 2.813754 ACTCATTGAATGTTGACGTGGG 59.186 45.455 4.93 0.00 0.00 4.61
4144 5293 3.498018 TGACTCATTGAATGTTGACGTGG 59.502 43.478 4.93 0.00 0.00 4.94
4145 5294 4.730600 TGACTCATTGAATGTTGACGTG 57.269 40.909 4.93 0.00 0.00 4.49
4146 5295 5.582269 CCTATGACTCATTGAATGTTGACGT 59.418 40.000 4.93 0.00 0.00 4.34
4147 5296 5.812127 TCCTATGACTCATTGAATGTTGACG 59.188 40.000 4.93 0.00 0.00 4.35
4148 5297 7.615582 TTCCTATGACTCATTGAATGTTGAC 57.384 36.000 4.93 1.64 0.00 3.18
4149 5298 8.634335 TTTTCCTATGACTCATTGAATGTTGA 57.366 30.769 4.93 0.00 0.00 3.18
4150 5299 8.733458 TCTTTTCCTATGACTCATTGAATGTTG 58.267 33.333 4.93 2.64 0.00 3.33
4151 5300 8.868522 TCTTTTCCTATGACTCATTGAATGTT 57.131 30.769 4.93 0.00 0.00 2.71
4152 5301 9.471702 AATCTTTTCCTATGACTCATTGAATGT 57.528 29.630 4.93 0.00 0.00 2.71
4162 5311 9.793259 TGTTGAAGTTAATCTTTTCCTATGACT 57.207 29.630 0.00 0.00 36.40 3.41
4165 5314 9.294030 GCATGTTGAAGTTAATCTTTTCCTATG 57.706 33.333 0.00 0.00 36.40 2.23
4166 5315 9.023962 TGCATGTTGAAGTTAATCTTTTCCTAT 57.976 29.630 0.00 0.00 36.40 2.57
4167 5316 8.402798 TGCATGTTGAAGTTAATCTTTTCCTA 57.597 30.769 0.00 0.00 36.40 2.94
4168 5317 7.288810 TGCATGTTGAAGTTAATCTTTTCCT 57.711 32.000 0.00 0.00 36.40 3.36
4169 5318 7.945033 TTGCATGTTGAAGTTAATCTTTTCC 57.055 32.000 0.00 0.00 36.40 3.13
4170 5319 8.816144 TGTTTGCATGTTGAAGTTAATCTTTTC 58.184 29.630 0.00 0.00 36.40 2.29
4171 5320 8.715191 TGTTTGCATGTTGAAGTTAATCTTTT 57.285 26.923 0.00 0.00 36.40 2.27
4172 5321 8.767085 CATGTTTGCATGTTGAAGTTAATCTTT 58.233 29.630 0.00 0.00 45.48 2.52
4173 5322 8.301730 CATGTTTGCATGTTGAAGTTAATCTT 57.698 30.769 0.00 0.00 45.48 2.40
4174 5323 7.878477 CATGTTTGCATGTTGAAGTTAATCT 57.122 32.000 0.00 0.00 45.48 2.40
4266 5415 9.046296 CGGAGAAATAATATGTGAGCTAAAACT 57.954 33.333 0.00 0.00 0.00 2.66
4267 5416 9.042008 TCGGAGAAATAATATGTGAGCTAAAAC 57.958 33.333 0.00 0.00 0.00 2.43
4268 5417 9.607988 TTCGGAGAAATAATATGTGAGCTAAAA 57.392 29.630 0.00 0.00 45.90 1.52
4269 5418 9.778741 ATTCGGAGAAATAATATGTGAGCTAAA 57.221 29.630 0.00 0.00 45.90 1.85
4272 5421 9.950496 AATATTCGGAGAAATAATATGTGAGCT 57.050 29.630 0.00 0.00 45.90 4.09
4326 5475 9.663904 GCGAGAATATTTTGCAATACATTTCTA 57.336 29.630 0.00 0.00 28.31 2.10
4327 5476 8.190122 TGCGAGAATATTTTGCAATACATTTCT 58.810 29.630 0.00 5.96 29.78 2.52
4328 5477 8.338985 TGCGAGAATATTTTGCAATACATTTC 57.661 30.769 0.00 0.97 31.69 2.17
4329 5478 8.594687 GTTGCGAGAATATTTTGCAATACATTT 58.405 29.630 19.26 0.00 45.95 2.32
4330 5479 7.758980 TGTTGCGAGAATATTTTGCAATACATT 59.241 29.630 19.26 0.00 45.95 2.71
4331 5480 7.257003 TGTTGCGAGAATATTTTGCAATACAT 58.743 30.769 19.26 0.00 45.95 2.29
4332 5481 6.616017 TGTTGCGAGAATATTTTGCAATACA 58.384 32.000 19.26 14.11 45.95 2.29
4333 5482 7.383361 GTTGTTGCGAGAATATTTTGCAATAC 58.617 34.615 19.26 16.72 45.95 1.89
4334 5483 6.250315 CGTTGTTGCGAGAATATTTTGCAATA 59.750 34.615 19.26 15.80 45.95 1.90
4335 5484 5.060816 CGTTGTTGCGAGAATATTTTGCAAT 59.939 36.000 19.26 0.00 45.95 3.56
4336 5485 4.381270 CGTTGTTGCGAGAATATTTTGCAA 59.619 37.500 14.93 14.93 42.68 4.08
4337 5486 3.911365 CGTTGTTGCGAGAATATTTTGCA 59.089 39.130 6.21 6.21 0.00 4.08
4338 5487 3.911964 ACGTTGTTGCGAGAATATTTTGC 59.088 39.130 0.00 0.00 35.59 3.68
4339 5488 4.201391 GCACGTTGTTGCGAGAATATTTTG 60.201 41.667 0.00 0.00 35.59 2.44
4340 5489 3.911964 GCACGTTGTTGCGAGAATATTTT 59.088 39.130 0.00 0.00 35.59 1.82
4341 5490 3.488489 GCACGTTGTTGCGAGAATATTT 58.512 40.909 0.00 0.00 35.59 1.40
4342 5491 3.117434 GCACGTTGTTGCGAGAATATT 57.883 42.857 0.00 0.00 35.59 1.28
4343 5492 2.806288 GCACGTTGTTGCGAGAATAT 57.194 45.000 0.00 0.00 35.59 1.28
4352 5501 3.609214 GATGCCCCGCACGTTGTTG 62.609 63.158 0.00 0.00 43.04 3.33
4353 5502 3.361977 GATGCCCCGCACGTTGTT 61.362 61.111 0.00 0.00 43.04 2.83
4358 5507 4.201679 TAGACGATGCCCCGCACG 62.202 66.667 0.00 6.94 43.04 5.34
4359 5508 2.279517 CTAGACGATGCCCCGCAC 60.280 66.667 0.00 0.00 43.04 5.34
4360 5509 2.758327 ACTAGACGATGCCCCGCA 60.758 61.111 0.00 0.00 44.86 5.69
4361 5510 2.279517 CACTAGACGATGCCCCGC 60.280 66.667 0.00 0.00 0.00 6.13
4362 5511 1.452953 TAGCACTAGACGATGCCCCG 61.453 60.000 0.00 0.00 43.12 5.73
4363 5512 0.750850 TTAGCACTAGACGATGCCCC 59.249 55.000 0.00 0.00 43.12 5.80
4364 5513 2.100916 TCTTTAGCACTAGACGATGCCC 59.899 50.000 0.00 0.00 43.12 5.36
4365 5514 3.438297 TCTTTAGCACTAGACGATGCC 57.562 47.619 0.00 0.00 43.12 4.40
4366 5515 5.975410 AATTCTTTAGCACTAGACGATGC 57.025 39.130 0.00 0.00 42.39 3.91
4367 5516 9.249457 TGATAAATTCTTTAGCACTAGACGATG 57.751 33.333 0.00 0.00 36.68 3.84
4368 5517 9.469807 CTGATAAATTCTTTAGCACTAGACGAT 57.530 33.333 0.00 0.00 36.68 3.73
4369 5518 7.921214 CCTGATAAATTCTTTAGCACTAGACGA 59.079 37.037 0.00 0.00 36.68 4.20
4370 5519 7.306866 GCCTGATAAATTCTTTAGCACTAGACG 60.307 40.741 0.00 0.00 36.68 4.18
4371 5520 7.713073 AGCCTGATAAATTCTTTAGCACTAGAC 59.287 37.037 0.00 0.00 36.68 2.59
4372 5521 7.712639 CAGCCTGATAAATTCTTTAGCACTAGA 59.287 37.037 0.00 0.00 36.68 2.43
4376 5525 5.163622 TGCAGCCTGATAAATTCTTTAGCAC 60.164 40.000 0.00 0.00 36.68 4.40
4383 5532 3.019564 GTGGTGCAGCCTGATAAATTCT 58.980 45.455 14.36 0.00 38.35 2.40
4388 5537 3.556817 CTGTGGTGCAGCCTGATAA 57.443 52.632 14.36 0.00 38.52 1.75
4399 5548 5.357257 ACACTAGAAGTTTGTACTGTGGTG 58.643 41.667 0.00 0.00 37.00 4.17
4409 5558 6.844696 TTGCAAGTCTACACTAGAAGTTTG 57.155 37.500 0.00 0.00 36.40 2.93
4413 5562 6.166279 TCCATTTGCAAGTCTACACTAGAAG 58.834 40.000 0.00 0.00 36.40 2.85
4416 5565 5.724328 TCTCCATTTGCAAGTCTACACTAG 58.276 41.667 0.00 0.00 30.14 2.57
4427 5576 6.873076 GGTTGTTTTATCATCTCCATTTGCAA 59.127 34.615 0.00 0.00 0.00 4.08
4449 5598 7.907214 GACAATGTGTCTACAATAGAAGGTT 57.093 36.000 0.00 0.00 43.73 3.50
4497 5646 9.599866 TTAAGATGATAACACGAGATTCAATGT 57.400 29.630 0.00 0.00 0.00 2.71
4564 5715 3.543884 CGCAACCTACTTGGGCTAA 57.456 52.632 0.00 0.00 41.11 3.09
4578 5729 2.796483 ATCGTAGCCCAAGTGCGCAA 62.796 55.000 14.00 0.00 36.02 4.85
4579 5730 1.950973 TATCGTAGCCCAAGTGCGCA 61.951 55.000 5.66 5.66 36.02 6.09
4595 5746 1.346365 TGTTCTCGTGCTGCGTTATC 58.654 50.000 0.00 0.00 42.13 1.75
4604 5759 0.931005 GAATCGGGATGTTCTCGTGC 59.069 55.000 0.00 0.00 41.96 5.34
4607 5762 1.134818 TGGTGAATCGGGATGTTCTCG 60.135 52.381 0.00 0.00 42.83 4.04
4648 5803 1.466856 TCCATGAAGCCATCTTGTGC 58.533 50.000 0.00 0.00 32.65 4.57
4668 5823 2.661176 ATGGGAAGGTAGAAGGACCA 57.339 50.000 0.00 0.00 42.47 4.02
4669 5824 5.648330 AATTATGGGAAGGTAGAAGGACC 57.352 43.478 0.00 0.00 40.08 4.46
4677 5832 6.217900 TGGTTGGAGTAAATTATGGGAAGGTA 59.782 38.462 0.00 0.00 0.00 3.08
4697 5852 7.657761 GTGTGAAGATTAGATATAGGGTGGTTG 59.342 40.741 0.00 0.00 0.00 3.77
4701 5856 8.415950 AGAGTGTGAAGATTAGATATAGGGTG 57.584 38.462 0.00 0.00 0.00 4.61
4743 5898 7.646548 TGTATGTGAGTAGAAGAAGTAGCAT 57.353 36.000 0.00 0.00 0.00 3.79
4783 5938 6.380274 AGGAGATTCAGACCTCAACGTTATTA 59.620 38.462 0.00 0.00 0.00 0.98
4797 5983 4.016666 AGGAGAAGAGGAAGGAGATTCAGA 60.017 45.833 0.00 0.00 39.91 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.