Multiple sequence alignment - TraesCS7A01G456000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G456000 chr7A 100.000 4173 0 0 1 4173 652300525 652304697 0.000000e+00 7707
1 TraesCS7A01G456000 chr7A 83.077 130 21 1 3595 3723 377940444 377940315 2.640000e-22 117
2 TraesCS7A01G456000 chr7A 83.206 131 19 3 3596 3724 548324183 548324054 2.640000e-22 117
3 TraesCS7A01G456000 chr7D 95.990 1596 45 5 1 1595 566024614 566026191 0.000000e+00 2575
4 TraesCS7A01G456000 chr7D 91.395 1871 115 20 1596 3436 566026524 566028378 0.000000e+00 2521
5 TraesCS7A01G456000 chr7D 89.914 466 22 9 3727 4171 566095594 566095133 1.010000e-160 577
6 TraesCS7A01G456000 chr7D 92.442 172 11 1 3727 3896 566041793 566041964 1.160000e-60 244
7 TraesCS7A01G456000 chr7D 91.716 169 11 2 1 168 474770229 474770063 9.020000e-57 231
8 TraesCS7A01G456000 chr7D 91.716 169 11 3 1 168 562209449 562209283 9.020000e-57 231
9 TraesCS7A01G456000 chr7D 91.124 169 12 3 1 168 109136913 109137079 4.200000e-55 226
10 TraesCS7A01G456000 chr7D 83.077 130 21 1 3596 3724 610688670 610688541 2.640000e-22 117
11 TraesCS7A01G456000 chr7B 95.921 1324 48 4 101 1423 617565595 617566913 0.000000e+00 2141
12 TraesCS7A01G456000 chr7B 89.405 1614 106 21 1913 3499 617566913 617568488 0.000000e+00 1973
13 TraesCS7A01G456000 chr7B 88.636 264 24 6 1 262 617782417 617782676 2.420000e-82 316
14 TraesCS7A01G456000 chr7B 90.811 185 11 3 3988 4171 617569673 617569852 4.170000e-60 243
15 TraesCS7A01G456000 chr7B 80.864 162 14 5 3874 4033 617569599 617569745 1.230000e-20 111
16 TraesCS7A01G456000 chr5B 86.148 1415 118 31 1806 3182 525810674 525812048 0.000000e+00 1456
17 TraesCS7A01G456000 chr5B 89.615 597 48 10 791 1380 525809817 525810406 0.000000e+00 747
18 TraesCS7A01G456000 chr5B 90.541 148 12 2 1368 1515 525810519 525810664 1.180000e-45 195
19 TraesCS7A01G456000 chr5D 85.755 1418 119 32 1806 3182 432871609 432872984 0.000000e+00 1423
20 TraesCS7A01G456000 chr5D 86.923 780 66 16 604 1380 432870595 432871341 0.000000e+00 843
21 TraesCS7A01G456000 chr5D 93.333 165 10 1 1647 1810 461072763 461072599 4.170000e-60 243
22 TraesCS7A01G456000 chr5D 89.189 148 14 2 1368 1515 432871454 432871599 2.560000e-42 183
23 TraesCS7A01G456000 chr5D 83.846 130 18 3 3596 3723 210799260 210799388 2.040000e-23 121
24 TraesCS7A01G456000 chr5A 82.814 1670 152 55 1806 3417 547410880 547412472 0.000000e+00 1369
25 TraesCS7A01G456000 chr5A 89.041 949 70 12 609 1552 547409965 547410884 0.000000e+00 1146
26 TraesCS7A01G456000 chr2D 95.092 163 6 2 1647 1808 318563894 318563733 5.350000e-64 255
27 TraesCS7A01G456000 chr2D 92.308 169 10 2 1 168 96422399 96422565 1.940000e-58 237
28 TraesCS7A01G456000 chr2D 90.055 181 14 4 1630 1807 22450775 22450954 9.020000e-57 231
29 TraesCS7A01G456000 chr2D 92.073 164 12 1 1647 1809 498472997 498473160 3.240000e-56 230
30 TraesCS7A01G456000 chr2D 91.124 169 13 2 1 168 357436193 357436360 1.170000e-55 228
31 TraesCS7A01G456000 chr3D 91.716 169 11 2 1 168 225105983 225105817 9.020000e-57 231
32 TraesCS7A01G456000 chr3D 91.716 169 11 2 1 168 253868833 253868999 9.020000e-57 231
33 TraesCS7A01G456000 chr3D 84.211 133 20 1 3596 3727 231577730 231577862 1.220000e-25 128
34 TraesCS7A01G456000 chr3D 82.946 129 21 1 3596 3723 269853638 269853766 9.480000e-22 115
35 TraesCS7A01G456000 chr2B 92.073 164 12 1 1647 1809 585712494 585712657 3.240000e-56 230
36 TraesCS7A01G456000 chr2B 92.025 163 8 3 1647 1808 387104648 387104490 1.510000e-54 224
37 TraesCS7A01G456000 chr2B 87.692 195 18 6 1636 1825 729635173 729635366 5.430000e-54 222
38 TraesCS7A01G456000 chr3B 90.698 172 14 2 1645 1814 251650514 251650685 1.170000e-55 228
39 TraesCS7A01G456000 chr2A 83.721 129 20 1 3596 3723 683736244 683736372 2.040000e-23 121
40 TraesCS7A01G456000 chr6A 83.077 130 20 2 3596 3723 573380793 573380922 2.640000e-22 117
41 TraesCS7A01G456000 chr1A 82.946 129 21 1 3596 3723 140955191 140955319 9.480000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G456000 chr7A 652300525 652304697 4172 False 7707.000000 7707 100.00000 1 4173 1 chr7A.!!$F1 4172
1 TraesCS7A01G456000 chr7D 566024614 566028378 3764 False 2548.000000 2575 93.69250 1 3436 2 chr7D.!!$F3 3435
2 TraesCS7A01G456000 chr7B 617565595 617569852 4257 False 1117.000000 2141 89.25025 101 4171 4 chr7B.!!$F2 4070
3 TraesCS7A01G456000 chr5B 525809817 525812048 2231 False 799.333333 1456 88.76800 791 3182 3 chr5B.!!$F1 2391
4 TraesCS7A01G456000 chr5D 432870595 432872984 2389 False 816.333333 1423 87.28900 604 3182 3 chr5D.!!$F2 2578
5 TraesCS7A01G456000 chr5A 547409965 547412472 2507 False 1257.500000 1369 85.92750 609 3417 2 chr5A.!!$F1 2808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 107 0.402121 ACACTGGAAAAGGCTCTCCC 59.598 55.0 11.87 3.17 0.00 4.30 F
1055 1083 0.620556 CTAGTCCCAATGGCACCACT 59.379 55.0 0.00 0.00 0.00 4.00 F
2290 2937 0.394899 GGCCAGAATTGCTACCAGCT 60.395 55.0 0.00 0.00 42.97 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 1154 0.908198 CTCTTTCCTCCACCCTCCAG 59.092 60.0 0.00 0.00 0.00 3.86 R
2411 3058 0.320771 ATCTGAACCCACACACGAGC 60.321 55.0 0.00 0.00 0.00 5.03 R
3453 4173 0.030101 CGCAACAAGCTTTTCCGGAA 59.970 50.0 14.35 14.35 42.61 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.241165 TTGTCAATGGCTCACTGCAG 58.759 50.000 13.48 13.48 45.15 4.41
47 48 2.555325 CAATGGCTCACTGCAGAAAAGA 59.445 45.455 23.35 11.32 45.15 2.52
48 49 2.346766 TGGCTCACTGCAGAAAAGAA 57.653 45.000 23.35 3.94 45.15 2.52
85 86 7.076842 TGCATTTATCACTGCTAAGAAAGAC 57.923 36.000 0.00 0.00 39.16 3.01
99 101 2.952310 AGAAAGACACACTGGAAAAGGC 59.048 45.455 0.00 0.00 0.00 4.35
105 107 0.402121 ACACTGGAAAAGGCTCTCCC 59.598 55.000 11.87 3.17 0.00 4.30
155 157 7.229707 TCAACAACGGAAAAGATAGGATTGAAA 59.770 33.333 0.00 0.00 0.00 2.69
208 210 6.922957 TCAAAATATGGCTCTTTGTGTTTGAC 59.077 34.615 0.00 0.00 32.92 3.18
243 245 8.868522 ATATCCTTTTCTTTGTGTGAGATGAA 57.131 30.769 0.00 0.00 0.00 2.57
287 289 6.200665 GTGTGAGATGACAGATATGCTTCTTC 59.799 42.308 0.00 0.00 0.00 2.87
328 330 7.069950 ACCTTCCTCTTGGCAATATATTTTTCC 59.930 37.037 0.00 0.00 0.00 3.13
329 331 7.069826 CCTTCCTCTTGGCAATATATTTTTCCA 59.930 37.037 0.00 1.41 0.00 3.53
449 451 8.574251 TTGCAAAAGGAAAGACTGCTATTATA 57.426 30.769 0.00 0.00 34.10 0.98
625 627 1.317613 TTTGCTTCATCTGCGTTGGT 58.682 45.000 0.00 0.00 0.00 3.67
646 649 4.382254 GGTCATGGTCCACGTCTTATTGTA 60.382 45.833 0.00 0.00 0.00 2.41
706 709 3.071023 AGTTCCATTCTTCACGAGGTTGA 59.929 43.478 0.00 0.00 0.00 3.18
931 956 9.612620 CAACATAAACTTAGAAGCGAAAATTCT 57.387 29.630 0.00 0.00 40.13 2.40
985 1010 7.136822 TCTATGTAGGCAAATCCACAGTTAT 57.863 36.000 0.00 0.00 37.29 1.89
1055 1083 0.620556 CTAGTCCCAATGGCACCACT 59.379 55.000 0.00 0.00 0.00 4.00
1350 1378 7.599998 GCTAAAATGAGTGTCAAATTGAACCAT 59.400 33.333 0.00 2.92 0.00 3.55
1569 1847 3.894427 TGGTTGCAATGTTATGGTGAAGT 59.106 39.130 0.59 0.00 0.00 3.01
1570 1848 4.343526 TGGTTGCAATGTTATGGTGAAGTT 59.656 37.500 0.59 0.00 0.00 2.66
1571 1849 5.536538 TGGTTGCAATGTTATGGTGAAGTTA 59.463 36.000 0.59 0.00 0.00 2.24
1756 2367 4.323417 TCACTCATTTTGCTCCGTATGTT 58.677 39.130 0.00 0.00 0.00 2.71
1759 2370 4.518970 ACTCATTTTGCTCCGTATGTTGTT 59.481 37.500 0.00 0.00 0.00 2.83
1771 2382 7.201661 GCTCCGTATGTTGTTTGTATTGGAATA 60.202 37.037 0.00 0.00 0.00 1.75
1872 2494 5.531634 CAAAAATGCATGTACACAAGACCT 58.468 37.500 0.00 0.00 0.00 3.85
1878 2500 5.373222 TGCATGTACACAAGACCTTTTACT 58.627 37.500 0.00 0.00 0.00 2.24
1935 2557 7.487829 TGAAAGCACTTGACTAAATTTTGTGTC 59.512 33.333 10.05 10.03 0.00 3.67
1938 2560 6.095440 AGCACTTGACTAAATTTTGTGTCTGT 59.905 34.615 10.05 9.67 0.00 3.41
1962 2586 6.892658 TGTTATGCAGTTGACTACCAAAAT 57.107 33.333 0.00 0.00 36.36 1.82
1963 2587 6.908825 TGTTATGCAGTTGACTACCAAAATC 58.091 36.000 0.00 0.00 36.36 2.17
1975 2599 9.906660 TTGACTACCAAAATCACAATATGTTTC 57.093 29.630 0.00 0.00 0.00 2.78
2092 2734 4.858850 TGCATCACTTAATCAATGGGAGT 58.141 39.130 0.00 0.00 0.00 3.85
2094 2736 6.422333 TGCATCACTTAATCAATGGGAGTTA 58.578 36.000 0.00 0.00 0.00 2.24
2133 2776 6.549364 TGACCACAGTTTGATAAAAGGTGAAT 59.451 34.615 8.30 0.00 31.86 2.57
2134 2777 7.721842 TGACCACAGTTTGATAAAAGGTGAATA 59.278 33.333 8.30 0.00 31.86 1.75
2168 2811 8.820831 AGTTATGATGTGATATAAGAGAAGGGG 58.179 37.037 0.00 0.00 0.00 4.79
2176 2819 8.010697 TGTGATATAAGAGAAGGGGTCAGATAA 58.989 37.037 0.00 0.00 0.00 1.75
2201 2844 7.396540 AAGATCTTTGTATTTGTGGCTTAGG 57.603 36.000 0.88 0.00 0.00 2.69
2219 2862 3.325293 AGGTGCGATCATAGGCATTAG 57.675 47.619 0.00 0.00 41.83 1.73
2221 2864 1.391485 GTGCGATCATAGGCATTAGCG 59.609 52.381 0.00 0.00 41.83 4.26
2268 2911 5.586243 GGCTTATGAGTGCTGAAATAGAACA 59.414 40.000 0.00 0.00 37.42 3.18
2290 2937 0.394899 GGCCAGAATTGCTACCAGCT 60.395 55.000 0.00 0.00 42.97 4.24
2307 2954 3.944015 CCAGCTTACCAGGAGAAGATTTG 59.056 47.826 9.36 5.02 0.00 2.32
2378 3025 3.134804 AGTGCTTCTGTTGACTTGTAGGT 59.865 43.478 0.00 0.00 0.00 3.08
2384 3031 6.204882 GCTTCTGTTGACTTGTAGGTACAATT 59.795 38.462 3.08 0.00 44.34 2.32
2414 3061 8.912658 GTTTAACTTTAAAACTGCTATTGGCTC 58.087 33.333 0.00 0.00 36.83 4.70
2453 3100 5.088680 TGATGCATACAATCACTGTCAGA 57.911 39.130 6.91 0.00 39.64 3.27
2454 3101 5.677567 TGATGCATACAATCACTGTCAGAT 58.322 37.500 6.91 0.00 39.64 2.90
2456 3103 7.274447 TGATGCATACAATCACTGTCAGATAA 58.726 34.615 6.91 0.00 39.64 1.75
2457 3104 6.908870 TGCATACAATCACTGTCAGATAAC 57.091 37.500 6.91 0.00 39.64 1.89
2460 3107 4.537135 ACAATCACTGTCAGATAACGGT 57.463 40.909 6.91 0.00 39.34 4.83
2463 3110 4.537135 ATCACTGTCAGATAACGGTTGT 57.463 40.909 6.91 0.00 36.61 3.32
2464 3111 3.909430 TCACTGTCAGATAACGGTTGTC 58.091 45.455 6.91 9.33 36.61 3.18
2470 3123 6.376299 ACTGTCAGATAACGGTTGTCACTATA 59.624 38.462 18.02 2.89 35.16 1.31
2471 3124 6.792326 TGTCAGATAACGGTTGTCACTATAG 58.208 40.000 18.02 0.00 0.00 1.31
2520 3180 7.995289 TGTACACAAGTTCATTCAAATTCTGT 58.005 30.769 0.00 0.00 28.38 3.41
2535 3195 7.275183 TCAAATTCTGTTCTCTTTGAGACTCA 58.725 34.615 0.00 0.00 38.51 3.41
2623 3287 1.129811 CCTTGTTTCGGGTAACATCGC 59.870 52.381 0.00 0.00 37.81 4.58
2636 3300 0.239347 ACATCGCAGCAGCTGAAAAC 59.761 50.000 27.39 7.15 39.10 2.43
2638 3302 1.915614 ATCGCAGCAGCTGAAAACCG 61.916 55.000 27.39 18.64 39.10 4.44
2687 3351 2.429971 CCAGCATTCACAGAGCTAGAGA 59.570 50.000 0.00 0.00 36.73 3.10
2689 3353 4.443175 CCAGCATTCACAGAGCTAGAGAAT 60.443 45.833 0.00 5.77 36.73 2.40
2692 3356 5.585445 AGCATTCACAGAGCTAGAGAATTTG 59.415 40.000 8.08 3.23 36.73 2.32
2806 3475 9.918630 ATAGTTTTGAGAACTTGAATGGAAATG 57.081 29.630 0.00 0.00 0.00 2.32
2807 3476 6.703165 AGTTTTGAGAACTTGAATGGAAATGC 59.297 34.615 0.00 0.00 0.00 3.56
2808 3477 5.787953 TTGAGAACTTGAATGGAAATGCA 57.212 34.783 0.00 0.00 0.00 3.96
2809 3478 5.988310 TGAGAACTTGAATGGAAATGCAT 57.012 34.783 0.00 0.00 0.00 3.96
2810 3479 6.349243 TGAGAACTTGAATGGAAATGCATT 57.651 33.333 5.99 5.99 0.00 3.56
2819 3488 6.944096 TGAATGGAAATGCATTCATTGGTAA 58.056 32.000 23.65 9.53 41.77 2.85
2823 3492 9.550406 AATGGAAATGCATTCATTGGTAATTAG 57.450 29.630 19.93 0.00 41.77 1.73
2825 3494 7.980662 TGGAAATGCATTCATTGGTAATTAGTG 59.019 33.333 13.38 0.00 41.77 2.74
2965 3638 1.045350 TCAATCTGCGGAGGGAGGAG 61.045 60.000 3.37 0.00 31.58 3.69
3019 3692 4.719997 CGCCTGAAACGCCAAAAA 57.280 50.000 0.00 0.00 0.00 1.94
3086 3759 1.406887 GCGAGGAAGAACCCAATAGCA 60.407 52.381 0.00 0.00 40.05 3.49
3178 3863 1.971481 AGCAGTGCACATGAAGTTGA 58.029 45.000 21.04 0.00 0.00 3.18
3296 4004 9.193133 GAACTAACACATCGCATGTAGTAATAT 57.807 33.333 0.00 0.00 42.70 1.28
3451 4171 6.603599 GGCTTCTTGTTATCAATTACTCCCTT 59.396 38.462 0.00 0.00 32.82 3.95
3453 4173 7.554476 GCTTCTTGTTATCAATTACTCCCTTCT 59.446 37.037 0.00 0.00 32.82 2.85
3454 4174 9.454859 CTTCTTGTTATCAATTACTCCCTTCTT 57.545 33.333 0.00 0.00 32.82 2.52
3456 4176 8.047310 TCTTGTTATCAATTACTCCCTTCTTCC 58.953 37.037 0.00 0.00 32.82 3.46
3511 4241 2.363306 ATCCTTGAACACAACCTGCA 57.637 45.000 0.00 0.00 0.00 4.41
3520 4250 1.340991 ACACAACCTGCACTCCACTTT 60.341 47.619 0.00 0.00 0.00 2.66
3598 4328 7.748691 TTACAATTTAGTCCTTGTTGTACCC 57.251 36.000 0.00 0.00 35.65 3.69
3599 4329 5.697067 ACAATTTAGTCCTTGTTGTACCCA 58.303 37.500 0.00 0.00 31.74 4.51
3602 4332 5.836024 TTTAGTCCTTGTTGTACCCATCT 57.164 39.130 0.00 0.00 0.00 2.90
3603 4333 5.836024 TTAGTCCTTGTTGTACCCATCTT 57.164 39.130 0.00 0.00 0.00 2.40
3604 4334 6.938698 TTAGTCCTTGTTGTACCCATCTTA 57.061 37.500 0.00 0.00 0.00 2.10
3605 4335 5.422214 AGTCCTTGTTGTACCCATCTTAG 57.578 43.478 0.00 0.00 0.00 2.18
3606 4336 5.091552 AGTCCTTGTTGTACCCATCTTAGA 58.908 41.667 0.00 0.00 0.00 2.10
3607 4337 5.546499 AGTCCTTGTTGTACCCATCTTAGAA 59.454 40.000 0.00 0.00 0.00 2.10
3609 4339 6.884836 GTCCTTGTTGTACCCATCTTAGAATT 59.115 38.462 0.00 0.00 0.00 2.17
3610 4340 8.044908 GTCCTTGTTGTACCCATCTTAGAATTA 58.955 37.037 0.00 0.00 0.00 1.40
3611 4341 8.265055 TCCTTGTTGTACCCATCTTAGAATTAG 58.735 37.037 0.00 0.00 0.00 1.73
3612 4342 8.047310 CCTTGTTGTACCCATCTTAGAATTAGT 58.953 37.037 0.00 0.00 0.00 2.24
3613 4343 8.786826 TTGTTGTACCCATCTTAGAATTAGTG 57.213 34.615 0.00 0.00 0.00 2.74
3615 4345 6.553953 TGTACCCATCTTAGAATTAGTGCA 57.446 37.500 0.00 0.00 0.00 4.57
3616 4346 6.953101 TGTACCCATCTTAGAATTAGTGCAA 58.047 36.000 0.00 0.00 0.00 4.08
3617 4347 7.047891 TGTACCCATCTTAGAATTAGTGCAAG 58.952 38.462 0.00 0.00 0.00 4.01
3619 4349 4.276926 CCCATCTTAGAATTAGTGCAAGCC 59.723 45.833 0.00 0.00 0.00 4.35
3620 4350 4.883585 CCATCTTAGAATTAGTGCAAGCCA 59.116 41.667 0.00 0.00 0.00 4.75
3621 4351 5.008415 CCATCTTAGAATTAGTGCAAGCCAG 59.992 44.000 0.00 0.00 0.00 4.85
3622 4352 3.941483 TCTTAGAATTAGTGCAAGCCAGC 59.059 43.478 0.00 0.00 0.00 4.85
3623 4353 2.205022 AGAATTAGTGCAAGCCAGCA 57.795 45.000 0.00 0.00 43.35 4.41
3625 4355 1.133790 GAATTAGTGCAAGCCAGCAGG 59.866 52.381 0.28 0.00 46.69 4.85
3642 4372 3.149981 GCAGGCTTAACTTTGAGGTTCT 58.850 45.455 0.00 0.00 0.00 3.01
3643 4373 3.570125 GCAGGCTTAACTTTGAGGTTCTT 59.430 43.478 0.00 0.00 0.00 2.52
3644 4374 4.038042 GCAGGCTTAACTTTGAGGTTCTTT 59.962 41.667 0.00 0.00 0.00 2.52
3645 4375 5.451937 GCAGGCTTAACTTTGAGGTTCTTTT 60.452 40.000 0.00 0.00 0.00 2.27
3646 4376 6.209361 CAGGCTTAACTTTGAGGTTCTTTTC 58.791 40.000 0.00 0.00 0.00 2.29
3648 4378 5.008316 GGCTTAACTTTGAGGTTCTTTTCGA 59.992 40.000 0.00 0.00 0.00 3.71
3649 4379 6.459161 GGCTTAACTTTGAGGTTCTTTTCGAA 60.459 38.462 0.00 0.00 0.00 3.71
3650 4380 7.139392 GCTTAACTTTGAGGTTCTTTTCGAAT 58.861 34.615 0.00 0.00 33.45 3.34
3651 4381 7.113544 GCTTAACTTTGAGGTTCTTTTCGAATG 59.886 37.037 0.00 0.00 33.45 2.67
3653 4383 6.305693 ACTTTGAGGTTCTTTTCGAATGAG 57.694 37.500 0.00 0.32 33.45 2.90
3654 4384 4.749245 TTGAGGTTCTTTTCGAATGAGC 57.251 40.909 0.00 2.92 33.45 4.26
3655 4385 4.008074 TGAGGTTCTTTTCGAATGAGCT 57.992 40.909 0.00 0.34 33.45 4.09
3656 4386 4.389374 TGAGGTTCTTTTCGAATGAGCTT 58.611 39.130 0.00 0.00 33.45 3.74
3657 4387 4.452455 TGAGGTTCTTTTCGAATGAGCTTC 59.548 41.667 15.12 15.12 33.45 3.86
3659 4389 5.794894 AGGTTCTTTTCGAATGAGCTTCTA 58.205 37.500 0.00 0.00 33.45 2.10
3661 4391 6.710744 AGGTTCTTTTCGAATGAGCTTCTAAA 59.289 34.615 0.00 0.00 33.45 1.85
3703 4433 8.937207 ATTAATATGAGTAGTCTACCGTTCCT 57.063 34.615 6.38 0.00 0.00 3.36
3706 4436 8.937207 AATATGAGTAGTCTACCGTTCCTATT 57.063 34.615 6.38 4.93 0.00 1.73
3709 4439 7.798596 TGAGTAGTCTACCGTTCCTATTAAG 57.201 40.000 6.38 0.00 0.00 1.85
3710 4440 7.341805 TGAGTAGTCTACCGTTCCTATTAAGT 58.658 38.462 6.38 0.00 0.00 2.24
3712 4442 7.341805 AGTAGTCTACCGTTCCTATTAAGTCA 58.658 38.462 6.38 0.00 0.00 3.41
3715 4445 3.538634 ACCGTTCCTATTAAGTCAGGC 57.461 47.619 0.00 0.00 0.00 4.85
3716 4446 3.105283 ACCGTTCCTATTAAGTCAGGCT 58.895 45.455 0.00 0.00 0.00 4.58
3719 4449 4.500035 CCGTTCCTATTAAGTCAGGCTCTC 60.500 50.000 0.00 0.00 0.00 3.20
3720 4450 4.098044 CGTTCCTATTAAGTCAGGCTCTCA 59.902 45.833 0.00 0.00 0.00 3.27
3722 4452 4.610333 TCCTATTAAGTCAGGCTCTCACA 58.390 43.478 0.00 0.00 0.00 3.58
3733 4463 1.623359 GCTCTCACAGCGTTCTACTG 58.377 55.000 0.00 0.00 38.76 2.74
3735 4465 0.958822 TCTCACAGCGTTCTACTGCA 59.041 50.000 0.00 0.00 38.79 4.41
3736 4466 1.339929 TCTCACAGCGTTCTACTGCAA 59.660 47.619 0.00 0.00 38.79 4.08
3737 4467 2.029020 TCTCACAGCGTTCTACTGCAAT 60.029 45.455 0.00 0.00 38.79 3.56
3738 4468 2.068519 TCACAGCGTTCTACTGCAATG 58.931 47.619 0.00 0.00 38.79 2.82
3739 4469 0.798776 ACAGCGTTCTACTGCAATGC 59.201 50.000 0.00 0.00 38.79 3.56
3742 4472 1.078709 GCGTTCTACTGCAATGCTGA 58.921 50.000 18.78 3.19 33.65 4.26
3743 4473 1.464608 GCGTTCTACTGCAATGCTGAA 59.535 47.619 18.78 8.87 33.65 3.02
3744 4474 2.096496 GCGTTCTACTGCAATGCTGAAT 59.904 45.455 18.78 0.00 33.65 2.57
3745 4475 3.426695 GCGTTCTACTGCAATGCTGAATT 60.427 43.478 18.78 0.00 33.65 2.17
3747 4477 4.556135 CGTTCTACTGCAATGCTGAATTTG 59.444 41.667 18.78 4.23 0.00 2.32
3748 4478 5.464168 GTTCTACTGCAATGCTGAATTTGT 58.536 37.500 18.78 0.00 0.00 2.83
3749 4479 5.710513 TCTACTGCAATGCTGAATTTGTT 57.289 34.783 18.78 0.00 0.00 2.83
3751 4481 4.325028 ACTGCAATGCTGAATTTGTTCA 57.675 36.364 18.78 0.00 0.00 3.18
3752 4482 4.053295 ACTGCAATGCTGAATTTGTTCAC 58.947 39.130 18.78 0.00 0.00 3.18
3753 4483 4.202182 ACTGCAATGCTGAATTTGTTCACT 60.202 37.500 18.78 0.00 0.00 3.41
3755 4485 4.038282 TGCAATGCTGAATTTGTTCACTCT 59.962 37.500 6.82 0.00 0.00 3.24
3758 4488 6.210796 CAATGCTGAATTTGTTCACTCTTCA 58.789 36.000 0.00 0.00 0.00 3.02
3759 4489 5.428496 TGCTGAATTTGTTCACTCTTCAG 57.572 39.130 6.30 6.30 43.51 3.02
3760 4490 4.883585 TGCTGAATTTGTTCACTCTTCAGT 59.116 37.500 11.06 0.00 42.92 3.41
3761 4491 5.357878 TGCTGAATTTGTTCACTCTTCAGTT 59.642 36.000 11.06 0.00 42.92 3.16
3762 4492 5.684626 GCTGAATTTGTTCACTCTTCAGTTG 59.315 40.000 11.06 0.00 42.92 3.16
3766 4496 4.355543 TTGTTCACTCTTCAGTTGCAAC 57.644 40.909 22.17 22.17 0.00 4.17
3767 4497 3.609853 TGTTCACTCTTCAGTTGCAACT 58.390 40.909 26.36 26.36 40.60 3.16
3769 4499 3.541996 TCACTCTTCAGTTGCAACTCA 57.458 42.857 28.97 15.27 37.08 3.41
3770 4500 3.872696 TCACTCTTCAGTTGCAACTCAA 58.127 40.909 28.97 22.16 37.08 3.02
3771 4501 4.454678 TCACTCTTCAGTTGCAACTCAAT 58.545 39.130 28.97 5.50 37.08 2.57
3772 4502 4.883585 TCACTCTTCAGTTGCAACTCAATT 59.116 37.500 28.97 7.65 37.08 2.32
3773 4503 5.357878 TCACTCTTCAGTTGCAACTCAATTT 59.642 36.000 28.97 7.29 37.08 1.82
3774 4504 6.542005 TCACTCTTCAGTTGCAACTCAATTTA 59.458 34.615 28.97 10.49 37.08 1.40
3775 4505 7.229306 TCACTCTTCAGTTGCAACTCAATTTAT 59.771 33.333 28.97 9.67 37.08 1.40
3776 4506 7.864379 CACTCTTCAGTTGCAACTCAATTTATT 59.136 33.333 28.97 7.15 37.08 1.40
3777 4507 8.078596 ACTCTTCAGTTGCAACTCAATTTATTC 58.921 33.333 28.97 0.00 37.08 1.75
3778 4508 7.939782 TCTTCAGTTGCAACTCAATTTATTCA 58.060 30.769 28.97 0.00 37.08 2.57
3779 4509 7.862372 TCTTCAGTTGCAACTCAATTTATTCAC 59.138 33.333 28.97 0.00 37.08 3.18
3780 4510 7.275888 TCAGTTGCAACTCAATTTATTCACT 57.724 32.000 28.97 0.03 37.08 3.41
3781 4511 7.140705 TCAGTTGCAACTCAATTTATTCACTG 58.859 34.615 28.97 13.50 37.08 3.66
3782 4512 5.922544 AGTTGCAACTCAATTTATTCACTGC 59.077 36.000 26.36 0.00 36.99 4.40
3783 4513 5.450592 TGCAACTCAATTTATTCACTGCA 57.549 34.783 0.00 0.00 35.08 4.41
3784 4514 5.840715 TGCAACTCAATTTATTCACTGCAA 58.159 33.333 0.00 0.00 34.57 4.08
3789 4519 6.097356 ACTCAATTTATTCACTGCAATGCTG 58.903 36.000 10.59 10.59 0.00 4.41
3801 4531 2.486951 CAATGCTGCATTCTACTGCC 57.513 50.000 24.04 0.00 41.58 4.85
3802 4532 2.022195 CAATGCTGCATTCTACTGCCT 58.978 47.619 24.04 0.00 41.58 4.75
3803 4533 1.964552 ATGCTGCATTCTACTGCCTC 58.035 50.000 9.81 0.00 41.58 4.70
3804 4534 0.907486 TGCTGCATTCTACTGCCTCT 59.093 50.000 0.00 0.00 41.58 3.69
3807 4537 2.277969 CTGCATTCTACTGCCTCTGTG 58.722 52.381 0.00 0.00 41.58 3.66
3808 4538 1.012841 GCATTCTACTGCCTCTGTGC 58.987 55.000 0.00 0.00 36.10 4.57
3810 4540 2.938756 GCATTCTACTGCCTCTGTGCTT 60.939 50.000 0.00 0.00 36.10 3.91
3813 4543 4.826274 TTCTACTGCCTCTGTGCTTAAT 57.174 40.909 0.00 0.00 0.00 1.40
3814 4544 4.826274 TCTACTGCCTCTGTGCTTAATT 57.174 40.909 0.00 0.00 0.00 1.40
3815 4545 4.759782 TCTACTGCCTCTGTGCTTAATTC 58.240 43.478 0.00 0.00 0.00 2.17
3816 4546 3.423539 ACTGCCTCTGTGCTTAATTCA 57.576 42.857 0.00 0.00 0.00 2.57
3818 4548 3.244700 ACTGCCTCTGTGCTTAATTCAGT 60.245 43.478 0.00 0.00 0.00 3.41
3820 4550 3.077359 GCCTCTGTGCTTAATTCAGTGT 58.923 45.455 0.00 0.00 0.00 3.55
3821 4551 3.503748 GCCTCTGTGCTTAATTCAGTGTT 59.496 43.478 0.00 0.00 0.00 3.32
3822 4552 4.695455 GCCTCTGTGCTTAATTCAGTGTTA 59.305 41.667 0.00 0.00 0.00 2.41
3823 4553 5.181245 GCCTCTGTGCTTAATTCAGTGTTAA 59.819 40.000 0.00 0.00 0.00 2.01
3825 4555 7.575720 GCCTCTGTGCTTAATTCAGTGTTAAAT 60.576 37.037 0.00 0.00 0.00 1.40
3826 4556 8.299570 CCTCTGTGCTTAATTCAGTGTTAAATT 58.700 33.333 0.00 0.00 0.00 1.82
3827 4557 9.683069 CTCTGTGCTTAATTCAGTGTTAAATTT 57.317 29.630 0.00 0.00 0.00 1.82
3828 4558 9.462174 TCTGTGCTTAATTCAGTGTTAAATTTG 57.538 29.630 0.00 0.00 0.00 2.32
3841 4865 8.647143 AGTGTTAAATTTGTTCACTGAATTGG 57.353 30.769 17.47 0.00 37.85 3.16
3847 4871 7.894376 AATTTGTTCACTGAATTGGCAATAG 57.106 32.000 14.05 10.68 0.00 1.73
3947 5417 5.039480 CAGTACTTGCTGTTCAGGAAATG 57.961 43.478 8.00 1.14 0.00 2.32
3948 5418 4.756642 CAGTACTTGCTGTTCAGGAAATGA 59.243 41.667 8.00 0.00 35.62 2.57
3949 5419 5.413833 CAGTACTTGCTGTTCAGGAAATGAT 59.586 40.000 8.00 0.00 37.89 2.45
3950 5420 6.006449 AGTACTTGCTGTTCAGGAAATGATT 58.994 36.000 8.00 0.00 37.89 2.57
3951 5421 5.382618 ACTTGCTGTTCAGGAAATGATTC 57.617 39.130 8.00 0.00 37.89 2.52
3952 5422 4.828939 ACTTGCTGTTCAGGAAATGATTCA 59.171 37.500 8.00 0.00 37.89 2.57
3953 5423 5.048224 ACTTGCTGTTCAGGAAATGATTCAG 60.048 40.000 8.00 0.00 40.32 3.02
3968 5438 4.005650 TGATTCAGCAGTGATCAAACCTC 58.994 43.478 0.00 0.00 30.85 3.85
3969 5439 3.490439 TTCAGCAGTGATCAAACCTCA 57.510 42.857 0.00 0.00 30.85 3.86
3970 5440 2.771089 TCAGCAGTGATCAAACCTCAC 58.229 47.619 0.00 0.00 42.68 3.51
3971 5441 2.104622 TCAGCAGTGATCAAACCTCACA 59.895 45.455 0.00 0.00 44.37 3.58
3972 5442 2.880268 CAGCAGTGATCAAACCTCACAA 59.120 45.455 0.00 0.00 44.37 3.33
3973 5443 3.058432 CAGCAGTGATCAAACCTCACAAG 60.058 47.826 0.00 0.21 44.37 3.16
3975 5445 3.743521 CAGTGATCAAACCTCACAAGGA 58.256 45.455 0.00 0.00 46.67 3.36
3976 5446 4.136796 CAGTGATCAAACCTCACAAGGAA 58.863 43.478 0.00 0.00 46.67 3.36
3977 5447 4.580167 CAGTGATCAAACCTCACAAGGAAA 59.420 41.667 0.00 0.00 46.67 3.13
3978 5448 5.242393 CAGTGATCAAACCTCACAAGGAAAT 59.758 40.000 0.00 0.00 46.67 2.17
3979 5449 5.242393 AGTGATCAAACCTCACAAGGAAATG 59.758 40.000 0.00 0.00 46.67 2.32
3980 5450 5.241506 GTGATCAAACCTCACAAGGAAATGA 59.758 40.000 0.00 0.61 46.67 2.57
3981 5451 6.012113 TGATCAAACCTCACAAGGAAATGAT 58.988 36.000 0.00 5.10 46.67 2.45
3982 5452 6.494491 TGATCAAACCTCACAAGGAAATGATT 59.506 34.615 0.00 0.00 46.67 2.57
3983 5453 6.331369 TCAAACCTCACAAGGAAATGATTC 57.669 37.500 0.00 0.00 46.67 2.52
3984 5454 5.832595 TCAAACCTCACAAGGAAATGATTCA 59.167 36.000 0.00 0.00 46.67 2.57
3985 5455 6.494491 TCAAACCTCACAAGGAAATGATTCAT 59.506 34.615 0.00 0.00 46.67 2.57
3986 5456 6.923199 AACCTCACAAGGAAATGATTCATT 57.077 33.333 6.06 6.06 46.67 2.57
3987 5457 6.923199 ACCTCACAAGGAAATGATTCATTT 57.077 33.333 21.57 21.57 46.67 2.32
3988 5458 6.694447 ACCTCACAAGGAAATGATTCATTTG 58.306 36.000 25.33 15.71 46.67 2.32
3989 5459 6.103997 CCTCACAAGGAAATGATTCATTTGG 58.896 40.000 25.33 15.07 46.67 3.28
3990 5460 6.295462 CCTCACAAGGAAATGATTCATTTGGT 60.295 38.462 25.33 15.69 46.67 3.67
3991 5461 6.690530 TCACAAGGAAATGATTCATTTGGTC 58.309 36.000 25.33 13.44 43.05 4.02
3992 5462 6.267242 TCACAAGGAAATGATTCATTTGGTCA 59.733 34.615 25.33 6.00 43.05 4.02
3993 5463 6.930164 CACAAGGAAATGATTCATTTGGTCAA 59.070 34.615 25.33 0.00 43.05 3.18
3994 5464 7.441760 CACAAGGAAATGATTCATTTGGTCAAA 59.558 33.333 25.33 0.00 43.05 2.69
3995 5465 7.442062 ACAAGGAAATGATTCATTTGGTCAAAC 59.558 33.333 25.33 11.37 43.05 2.93
3996 5466 6.466812 AGGAAATGATTCATTTGGTCAAACC 58.533 36.000 25.33 18.16 43.05 3.27
4011 5481 6.074648 TGGTCAAACCTACAAGGAAATGATT 58.925 36.000 0.00 0.00 39.58 2.57
4018 5488 5.183904 ACCTACAAGGAAATGATTCAGCAAC 59.816 40.000 0.00 0.00 37.67 4.17
4027 5497 6.016777 GGAAATGATTCAGCAACGATCCTTAT 60.017 38.462 0.00 0.00 37.29 1.73
4088 5558 8.871686 AGTTCATTTGGTCAAAAATACAAGTC 57.128 30.769 0.00 0.00 33.56 3.01
4106 5576 9.757227 ATACAAGTCTAATCTGCACTAGAAATC 57.243 33.333 0.00 0.00 39.30 2.17
4108 5578 7.093112 ACAAGTCTAATCTGCACTAGAAATCCT 60.093 37.037 0.00 0.00 39.30 3.24
4109 5579 6.815089 AGTCTAATCTGCACTAGAAATCCTG 58.185 40.000 0.00 0.00 39.30 3.86
4110 5580 6.382570 AGTCTAATCTGCACTAGAAATCCTGT 59.617 38.462 0.00 0.00 39.30 4.00
4118 5588 2.166664 ACTAGAAATCCTGTCGGCTGTC 59.833 50.000 0.00 0.00 0.00 3.51
4164 5634 3.372060 CTTTTCTCAAACCAGAAACGCC 58.628 45.455 0.00 0.00 41.20 5.68
4166 5636 0.882927 TCTCAAACCAGAAACGCCGG 60.883 55.000 0.00 0.00 0.00 6.13
4171 5641 3.283684 CCAGAAACGCCGGCACAA 61.284 61.111 28.98 0.00 0.00 3.33
4172 5642 2.051345 CAGAAACGCCGGCACAAC 60.051 61.111 28.98 14.64 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.564709 TGACAAAGACAAGATCATTTCCTG 57.435 37.500 0.00 0.00 0.00 3.86
48 49 9.252962 CAGTGATAAATGCAAGAAGAAGTTTTT 57.747 29.630 0.00 0.00 0.00 1.94
62 63 6.963805 GTGTCTTTCTTAGCAGTGATAAATGC 59.036 38.462 1.99 0.00 42.87 3.56
68 69 4.993584 CAGTGTGTCTTTCTTAGCAGTGAT 59.006 41.667 0.00 0.00 31.19 3.06
85 86 1.528129 GGAGAGCCTTTTCCAGTGTG 58.472 55.000 0.00 0.00 33.55 3.82
99 101 7.038659 CGGAAGAAAGCATAATATAGGGAGAG 58.961 42.308 0.00 0.00 0.00 3.20
155 157 5.499004 TCTACAACTGAAACTAAGGGCAT 57.501 39.130 0.00 0.00 0.00 4.40
243 245 8.912988 TCTCACACAAGGAAAAAGATGTATTTT 58.087 29.630 0.00 0.00 33.86 1.82
253 255 5.436175 TCTGTCATCTCACACAAGGAAAAA 58.564 37.500 0.00 0.00 0.00 1.94
262 264 5.599732 AGAAGCATATCTGTCATCTCACAC 58.400 41.667 0.00 0.00 0.00 3.82
287 289 5.301805 AGAGGAAGGTGGTGTTTTTAACATG 59.698 40.000 0.00 0.00 44.35 3.21
328 330 3.986572 GTCGATCTATCCAAGCATCAGTG 59.013 47.826 0.00 0.00 0.00 3.66
329 331 3.894427 AGTCGATCTATCCAAGCATCAGT 59.106 43.478 0.00 0.00 0.00 3.41
516 518 2.938451 GCACTTCCGTGATGATTGATGA 59.062 45.455 0.00 0.00 43.97 2.92
625 627 3.973206 ACAATAAGACGTGGACCATGA 57.027 42.857 20.86 0.00 0.00 3.07
706 709 9.975218 ACTAACAACTTATATGTTTCCATCCTT 57.025 29.630 1.40 0.00 41.11 3.36
985 1010 7.124298 AGGAACTGACATTGTTGATACTAGCTA 59.876 37.037 0.00 0.00 37.18 3.32
1055 1083 1.152567 CCACCAGAAACCCTTGCCA 60.153 57.895 0.00 0.00 0.00 4.92
1126 1154 0.908198 CTCTTTCCTCCACCCTCCAG 59.092 60.000 0.00 0.00 0.00 3.86
1493 1771 9.337396 GAACAATAGACCCAAAATTTCCTTTTT 57.663 29.630 0.00 0.00 34.80 1.94
1631 2241 8.881262 ACGGAGGGAGTATTTAGAATCAATAAT 58.119 33.333 0.00 0.00 0.00 1.28
1681 2291 9.219603 CATCCGTATGTAGTCCATATTGAAATT 57.780 33.333 0.00 0.00 38.29 1.82
1702 2312 9.574458 CACTCTAAAATGGTCTATATACATCCG 57.426 37.037 0.00 0.00 0.00 4.18
1832 2454 4.120331 GCACGCAAGGACCATGCC 62.120 66.667 15.77 0.00 40.72 4.40
1833 2455 2.419057 TTTGCACGCAAGGACCATGC 62.419 55.000 11.75 11.75 46.39 4.06
1878 2500 8.201464 TGTCAGTACTCTTAAGAACATCAACAA 58.799 33.333 6.63 0.00 0.00 2.83
1935 2557 4.754618 TGGTAGTCAACTGCATAACAACAG 59.245 41.667 0.72 0.00 39.86 3.16
1938 2560 6.701145 TTTTGGTAGTCAACTGCATAACAA 57.299 33.333 0.72 0.00 34.67 2.83
1962 2586 7.366513 TCGAGCAAATTTGAAACATATTGTGA 58.633 30.769 22.31 0.61 0.00 3.58
1963 2587 7.565450 TCGAGCAAATTTGAAACATATTGTG 57.435 32.000 22.31 0.00 0.00 3.33
2057 2681 9.734620 GATTAAGTGATGCAGCAAAACATATTA 57.265 29.630 6.05 2.47 0.00 0.98
2092 2734 4.081365 TGTGGTCATTCGTCAGCCTTATAA 60.081 41.667 0.00 0.00 0.00 0.98
2094 2736 2.236146 TGTGGTCATTCGTCAGCCTTAT 59.764 45.455 0.00 0.00 0.00 1.73
2176 2819 7.451566 ACCTAAGCCACAAATACAAAGATCTTT 59.548 33.333 15.11 15.11 0.00 2.52
2201 2844 1.391485 CGCTAATGCCTATGATCGCAC 59.609 52.381 0.00 0.00 37.93 5.34
2219 2862 3.561310 TGGAACTTCTGATTATCATGCGC 59.439 43.478 0.00 0.00 0.00 6.09
2221 2864 5.008415 CCACTGGAACTTCTGATTATCATGC 59.992 44.000 0.00 0.00 0.00 4.06
2268 2911 1.211457 CTGGTAGCAATTCTGGCCTCT 59.789 52.381 3.32 0.00 0.00 3.69
2290 2937 4.993705 ACACCAAATCTTCTCCTGGTAA 57.006 40.909 0.00 0.00 40.23 2.85
2307 2954 3.877508 AGAGTTGTGAGTAGCAAAACACC 59.122 43.478 0.00 0.00 45.44 4.16
2345 2992 9.066892 AGTCAACAGAAGCACTTCATTTTATAA 57.933 29.630 12.65 0.00 41.84 0.98
2346 2993 8.621532 AGTCAACAGAAGCACTTCATTTTATA 57.378 30.769 12.65 0.00 41.84 0.98
2347 2994 7.516198 AGTCAACAGAAGCACTTCATTTTAT 57.484 32.000 12.65 0.00 41.84 1.40
2348 2995 6.942532 AGTCAACAGAAGCACTTCATTTTA 57.057 33.333 12.65 0.00 41.84 1.52
2349 2996 5.841957 AGTCAACAGAAGCACTTCATTTT 57.158 34.783 12.65 0.23 41.84 1.82
2411 3058 0.320771 ATCTGAACCCACACACGAGC 60.321 55.000 0.00 0.00 0.00 5.03
2414 3061 1.877637 TCAATCTGAACCCACACACG 58.122 50.000 0.00 0.00 0.00 4.49
2470 3123 7.502226 CAGTCTCAGAAGATAATCTCCACTACT 59.498 40.741 0.00 0.00 33.08 2.57
2471 3124 7.284489 ACAGTCTCAGAAGATAATCTCCACTAC 59.716 40.741 0.00 0.00 33.08 2.73
2552 3214 9.605955 CAAACATGACGAACAAAATATGTCTTA 57.394 29.630 0.00 0.00 42.99 2.10
2567 3231 3.186702 TCTGGTGAACAAACATGACGA 57.813 42.857 0.00 0.00 0.00 4.20
2623 3287 0.877071 ATCACGGTTTTCAGCTGCTG 59.123 50.000 23.31 23.31 0.00 4.41
2636 3300 8.260818 AGGAGGAATCAAATACATATATCACGG 58.739 37.037 0.00 0.00 0.00 4.94
2638 3302 9.950496 ACAGGAGGAATCAAATACATATATCAC 57.050 33.333 0.00 0.00 0.00 3.06
2687 3351 8.872845 GTTGAGAACACATCAAGAAAACAAATT 58.127 29.630 0.00 0.00 37.35 1.82
2689 3353 6.811170 GGTTGAGAACACATCAAGAAAACAAA 59.189 34.615 0.00 0.00 37.35 2.83
2692 3356 5.890334 TGGTTGAGAACACATCAAGAAAAC 58.110 37.500 0.00 0.00 37.35 2.43
2806 3475 8.158169 TCAGATCACTAATTACCAATGAATGC 57.842 34.615 0.00 0.00 0.00 3.56
2808 3477 9.293404 CCATCAGATCACTAATTACCAATGAAT 57.707 33.333 0.00 0.00 0.00 2.57
2809 3478 8.274322 ACCATCAGATCACTAATTACCAATGAA 58.726 33.333 0.00 0.00 0.00 2.57
2810 3479 7.805163 ACCATCAGATCACTAATTACCAATGA 58.195 34.615 0.00 0.00 0.00 2.57
2823 3492 6.371548 TGCTTACAGTTAAACCATCAGATCAC 59.628 38.462 0.00 0.00 0.00 3.06
2825 3494 6.595716 AGTGCTTACAGTTAAACCATCAGATC 59.404 38.462 0.00 0.00 0.00 2.75
2965 3638 0.383949 CCTCGGCTGCTCTTAGTCTC 59.616 60.000 0.00 0.00 0.00 3.36
3019 3692 5.751243 TTTCTTTCTTACGCTGCTTCTTT 57.249 34.783 0.00 0.00 0.00 2.52
3086 3759 0.706433 TCCACCCGGTTAGGTACTCT 59.294 55.000 0.00 0.00 38.39 3.24
3145 3830 2.286833 GCACTGCTTAAACTTGTCGTCA 59.713 45.455 0.00 0.00 0.00 4.35
3178 3863 6.257994 ACAATATCCAGGAATGACTGACAT 57.742 37.500 0.00 0.00 40.97 3.06
3296 4004 5.451937 CCAATCTAGCATGTTTCCGAGTCTA 60.452 44.000 0.00 0.00 0.00 2.59
3331 4044 4.272748 GCGTTTCCAGAAAACTAACAGAGT 59.727 41.667 0.00 0.00 44.25 3.24
3399 4118 0.544223 CATCCCCATGTACCGTCCAA 59.456 55.000 0.00 0.00 0.00 3.53
3451 4171 1.336755 GCAACAAGCTTTTCCGGAAGA 59.663 47.619 17.97 12.52 41.15 2.87
3453 4173 0.030101 CGCAACAAGCTTTTCCGGAA 59.970 50.000 14.35 14.35 42.61 4.30
3454 4174 1.652012 CGCAACAAGCTTTTCCGGA 59.348 52.632 0.00 0.00 42.61 5.14
3456 4176 0.934436 CACCGCAACAAGCTTTTCCG 60.934 55.000 0.00 0.00 42.61 4.30
3477 4197 9.384682 GTGTTCAAGGATTAAATTGCAAAATTG 57.615 29.630 1.71 0.56 0.00 2.32
3492 4212 1.956477 GTGCAGGTTGTGTTCAAGGAT 59.044 47.619 0.00 0.00 33.97 3.24
3493 4213 1.064758 AGTGCAGGTTGTGTTCAAGGA 60.065 47.619 0.00 0.00 33.97 3.36
3499 4219 0.255890 AGTGGAGTGCAGGTTGTGTT 59.744 50.000 0.00 0.00 0.00 3.32
3572 4302 8.631797 GGGTACAACAAGGACTAAATTGTAAAA 58.368 33.333 0.00 0.00 38.66 1.52
3573 4303 7.778853 TGGGTACAACAAGGACTAAATTGTAAA 59.221 33.333 0.00 0.00 38.66 2.01
3574 4304 7.288560 TGGGTACAACAAGGACTAAATTGTAA 58.711 34.615 0.00 0.00 38.66 2.41
3575 4305 6.839454 TGGGTACAACAAGGACTAAATTGTA 58.161 36.000 0.00 0.00 38.66 2.41
3576 4306 5.697067 TGGGTACAACAAGGACTAAATTGT 58.303 37.500 0.00 0.00 41.28 2.71
3577 4307 6.659242 AGATGGGTACAACAAGGACTAAATTG 59.341 38.462 0.00 0.00 0.00 2.32
3578 4308 6.790319 AGATGGGTACAACAAGGACTAAATT 58.210 36.000 0.00 0.00 0.00 1.82
3579 4309 6.388619 AGATGGGTACAACAAGGACTAAAT 57.611 37.500 0.00 0.00 0.00 1.40
3580 4310 5.836024 AGATGGGTACAACAAGGACTAAA 57.164 39.130 0.00 0.00 0.00 1.85
3581 4311 5.836024 AAGATGGGTACAACAAGGACTAA 57.164 39.130 0.00 0.00 0.00 2.24
3582 4312 6.258354 TCTAAGATGGGTACAACAAGGACTA 58.742 40.000 0.00 0.00 0.00 2.59
3583 4313 5.091552 TCTAAGATGGGTACAACAAGGACT 58.908 41.667 0.00 0.00 0.00 3.85
3584 4314 5.416271 TCTAAGATGGGTACAACAAGGAC 57.584 43.478 0.00 0.00 0.00 3.85
3585 4315 6.636454 ATTCTAAGATGGGTACAACAAGGA 57.364 37.500 0.00 0.00 0.00 3.36
3586 4316 8.047310 ACTAATTCTAAGATGGGTACAACAAGG 58.953 37.037 0.00 0.00 0.00 3.61
3588 4318 7.335924 GCACTAATTCTAAGATGGGTACAACAA 59.664 37.037 0.00 0.00 0.00 2.83
3589 4319 6.821665 GCACTAATTCTAAGATGGGTACAACA 59.178 38.462 0.00 0.00 0.00 3.33
3591 4321 6.953101 TGCACTAATTCTAAGATGGGTACAA 58.047 36.000 0.00 0.00 0.00 2.41
3592 4322 6.553953 TGCACTAATTCTAAGATGGGTACA 57.446 37.500 0.00 0.00 0.00 2.90
3594 4324 6.055588 GCTTGCACTAATTCTAAGATGGGTA 58.944 40.000 0.00 0.00 0.00 3.69
3595 4325 4.884164 GCTTGCACTAATTCTAAGATGGGT 59.116 41.667 0.00 0.00 0.00 4.51
3596 4326 4.276926 GGCTTGCACTAATTCTAAGATGGG 59.723 45.833 0.00 0.00 0.00 4.00
3597 4327 4.883585 TGGCTTGCACTAATTCTAAGATGG 59.116 41.667 0.00 0.00 0.00 3.51
3598 4328 5.505324 GCTGGCTTGCACTAATTCTAAGATG 60.505 44.000 0.00 0.00 0.00 2.90
3599 4329 4.578105 GCTGGCTTGCACTAATTCTAAGAT 59.422 41.667 0.00 0.00 0.00 2.40
3602 4332 3.684908 TGCTGGCTTGCACTAATTCTAA 58.315 40.909 1.91 0.00 38.12 2.10
3603 4333 3.273434 CTGCTGGCTTGCACTAATTCTA 58.727 45.455 1.91 0.00 38.12 2.10
3604 4334 2.089980 CTGCTGGCTTGCACTAATTCT 58.910 47.619 1.91 0.00 38.12 2.40
3605 4335 1.133790 CCTGCTGGCTTGCACTAATTC 59.866 52.381 0.00 0.00 38.12 2.17
3606 4336 1.180029 CCTGCTGGCTTGCACTAATT 58.820 50.000 0.00 0.00 38.12 1.40
3607 4337 2.877975 CCTGCTGGCTTGCACTAAT 58.122 52.632 0.00 0.00 38.12 1.73
3619 4349 2.508526 ACCTCAAAGTTAAGCCTGCTG 58.491 47.619 0.00 0.00 0.00 4.41
3620 4350 2.959465 ACCTCAAAGTTAAGCCTGCT 57.041 45.000 0.00 0.00 0.00 4.24
3621 4351 3.149981 AGAACCTCAAAGTTAAGCCTGC 58.850 45.455 0.00 0.00 0.00 4.85
3622 4352 5.774498 AAAGAACCTCAAAGTTAAGCCTG 57.226 39.130 0.00 0.00 0.00 4.85
3623 4353 5.008712 CGAAAAGAACCTCAAAGTTAAGCCT 59.991 40.000 0.00 0.00 0.00 4.58
3625 4355 6.056428 TCGAAAAGAACCTCAAAGTTAAGC 57.944 37.500 0.00 0.00 0.00 3.09
3626 4356 8.342634 TCATTCGAAAAGAACCTCAAAGTTAAG 58.657 33.333 0.00 0.00 42.39 1.85
3627 4357 8.215926 TCATTCGAAAAGAACCTCAAAGTTAA 57.784 30.769 0.00 0.00 42.39 2.01
3628 4358 7.519970 GCTCATTCGAAAAGAACCTCAAAGTTA 60.520 37.037 13.43 0.00 42.39 2.24
3629 4359 6.693315 TCATTCGAAAAGAACCTCAAAGTT 57.307 33.333 0.00 0.00 42.39 2.66
3630 4360 5.278022 GCTCATTCGAAAAGAACCTCAAAGT 60.278 40.000 13.43 0.00 42.39 2.66
3632 4362 4.821805 AGCTCATTCGAAAAGAACCTCAAA 59.178 37.500 13.43 0.00 42.39 2.69
3633 4363 4.389374 AGCTCATTCGAAAAGAACCTCAA 58.611 39.130 13.43 0.00 42.39 3.02
3634 4364 4.008074 AGCTCATTCGAAAAGAACCTCA 57.992 40.909 13.43 0.00 42.39 3.86
3635 4365 4.693095 AGAAGCTCATTCGAAAAGAACCTC 59.307 41.667 13.43 5.38 43.16 3.85
3636 4366 4.646572 AGAAGCTCATTCGAAAAGAACCT 58.353 39.130 13.43 6.56 43.16 3.50
3637 4367 6.481954 TTAGAAGCTCATTCGAAAAGAACC 57.518 37.500 13.43 4.78 43.16 3.62
3678 4408 8.937207 AGGAACGGTAGACTACTCATATTAAT 57.063 34.615 12.31 0.00 0.00 1.40
3681 4411 8.937207 AATAGGAACGGTAGACTACTCATATT 57.063 34.615 12.31 11.83 0.00 1.28
3684 4414 7.997803 ACTTAATAGGAACGGTAGACTACTCAT 59.002 37.037 12.31 3.12 0.00 2.90
3687 4417 7.341805 TGACTTAATAGGAACGGTAGACTACT 58.658 38.462 12.31 0.00 0.00 2.57
3688 4418 7.255070 CCTGACTTAATAGGAACGGTAGACTAC 60.255 44.444 3.86 3.86 36.11 2.73
3689 4419 6.769822 CCTGACTTAATAGGAACGGTAGACTA 59.230 42.308 0.00 0.00 36.11 2.59
3690 4420 5.593502 CCTGACTTAATAGGAACGGTAGACT 59.406 44.000 0.00 0.00 36.11 3.24
3691 4421 5.735638 GCCTGACTTAATAGGAACGGTAGAC 60.736 48.000 0.00 0.00 36.11 2.59
3692 4422 4.340381 GCCTGACTTAATAGGAACGGTAGA 59.660 45.833 0.00 0.00 36.11 2.59
3693 4423 4.341520 AGCCTGACTTAATAGGAACGGTAG 59.658 45.833 0.00 0.00 36.11 3.18
3694 4424 4.284178 AGCCTGACTTAATAGGAACGGTA 58.716 43.478 0.00 0.00 36.11 4.02
3695 4425 3.105283 AGCCTGACTTAATAGGAACGGT 58.895 45.455 0.00 0.00 36.11 4.83
3696 4426 3.385111 AGAGCCTGACTTAATAGGAACGG 59.615 47.826 0.00 0.00 36.11 4.44
3697 4427 4.098044 TGAGAGCCTGACTTAATAGGAACG 59.902 45.833 0.00 0.00 36.11 3.95
3698 4428 5.105310 TGTGAGAGCCTGACTTAATAGGAAC 60.105 44.000 0.00 0.00 36.11 3.62
3699 4429 5.023452 TGTGAGAGCCTGACTTAATAGGAA 58.977 41.667 0.00 0.00 36.11 3.36
3700 4430 4.610333 TGTGAGAGCCTGACTTAATAGGA 58.390 43.478 0.00 0.00 36.11 2.94
3702 4432 4.367450 GCTGTGAGAGCCTGACTTAATAG 58.633 47.826 0.00 0.00 42.54 1.73
3703 4433 3.181486 CGCTGTGAGAGCCTGACTTAATA 60.181 47.826 0.00 0.00 46.01 0.98
3704 4434 2.417924 CGCTGTGAGAGCCTGACTTAAT 60.418 50.000 0.00 0.00 46.01 1.40
3705 4435 1.067565 CGCTGTGAGAGCCTGACTTAA 60.068 52.381 0.00 0.00 46.01 1.85
3706 4436 0.528017 CGCTGTGAGAGCCTGACTTA 59.472 55.000 0.00 0.00 46.01 2.24
3707 4437 1.291588 CGCTGTGAGAGCCTGACTT 59.708 57.895 0.00 0.00 46.01 3.01
3708 4438 1.467678 AACGCTGTGAGAGCCTGACT 61.468 55.000 0.00 0.00 46.01 3.41
3709 4439 1.005630 AACGCTGTGAGAGCCTGAC 60.006 57.895 0.00 0.00 46.01 3.51
3710 4440 1.181741 AGAACGCTGTGAGAGCCTGA 61.182 55.000 0.00 0.00 46.01 3.86
3712 4442 0.528470 GTAGAACGCTGTGAGAGCCT 59.472 55.000 0.00 0.00 46.01 4.58
3715 4445 1.068264 TGCAGTAGAACGCTGTGAGAG 60.068 52.381 0.00 0.00 36.42 3.20
3716 4446 0.958822 TGCAGTAGAACGCTGTGAGA 59.041 50.000 0.00 0.00 36.42 3.27
3719 4449 1.464687 GCATTGCAGTAGAACGCTGTG 60.465 52.381 3.15 0.00 36.42 3.66
3720 4450 0.798776 GCATTGCAGTAGAACGCTGT 59.201 50.000 3.15 0.00 36.42 4.40
3722 4452 1.081892 CAGCATTGCAGTAGAACGCT 58.918 50.000 11.91 0.00 0.00 5.07
3724 4454 4.346734 AATTCAGCATTGCAGTAGAACG 57.653 40.909 11.91 0.00 0.00 3.95
3725 4455 5.464168 ACAAATTCAGCATTGCAGTAGAAC 58.536 37.500 11.91 0.00 0.00 3.01
3726 4456 5.710513 ACAAATTCAGCATTGCAGTAGAA 57.289 34.783 11.91 9.43 0.00 2.10
3729 4459 5.009911 AGTGAACAAATTCAGCATTGCAGTA 59.990 36.000 11.91 0.00 45.58 2.74
3732 4462 4.038282 AGAGTGAACAAATTCAGCATTGCA 59.962 37.500 11.91 0.00 45.58 4.08
3733 4463 4.553323 AGAGTGAACAAATTCAGCATTGC 58.447 39.130 0.00 0.00 45.58 3.56
3735 4465 6.040166 ACTGAAGAGTGAACAAATTCAGCATT 59.960 34.615 11.94 0.00 46.88 3.56
3736 4466 5.533903 ACTGAAGAGTGAACAAATTCAGCAT 59.466 36.000 11.94 0.00 46.88 3.79
3737 4467 4.883585 ACTGAAGAGTGAACAAATTCAGCA 59.116 37.500 11.94 0.00 46.88 4.41
3738 4468 5.429957 ACTGAAGAGTGAACAAATTCAGC 57.570 39.130 11.94 0.00 46.88 4.26
3739 4469 5.684626 GCAACTGAAGAGTGAACAAATTCAG 59.315 40.000 10.76 10.76 45.58 3.02
3742 4472 5.581126 TGCAACTGAAGAGTGAACAAATT 57.419 34.783 0.00 0.00 30.61 1.82
3743 4473 5.126061 AGTTGCAACTGAAGAGTGAACAAAT 59.874 36.000 30.66 0.50 37.98 2.32
3744 4474 4.458989 AGTTGCAACTGAAGAGTGAACAAA 59.541 37.500 30.66 0.00 37.98 2.83
3745 4475 4.009675 AGTTGCAACTGAAGAGTGAACAA 58.990 39.130 30.66 0.00 37.98 2.83
3747 4477 3.623060 TGAGTTGCAACTGAAGAGTGAAC 59.377 43.478 35.67 17.27 39.88 3.18
3748 4478 3.872696 TGAGTTGCAACTGAAGAGTGAA 58.127 40.909 35.67 7.49 39.88 3.18
3749 4479 3.541996 TGAGTTGCAACTGAAGAGTGA 57.458 42.857 35.67 1.95 39.88 3.41
3751 4481 5.841957 AAATTGAGTTGCAACTGAAGAGT 57.158 34.783 35.67 19.29 39.88 3.24
3752 4482 8.077991 TGAATAAATTGAGTTGCAACTGAAGAG 58.922 33.333 35.67 0.00 39.88 2.85
3753 4483 7.862372 GTGAATAAATTGAGTTGCAACTGAAGA 59.138 33.333 35.67 21.68 39.88 2.87
3755 4485 7.648908 CAGTGAATAAATTGAGTTGCAACTGAA 59.351 33.333 35.67 32.32 39.88 3.02
3758 4488 5.922544 GCAGTGAATAAATTGAGTTGCAACT 59.077 36.000 31.57 31.57 43.16 3.16
3759 4489 5.691305 TGCAGTGAATAAATTGAGTTGCAAC 59.309 36.000 22.17 22.17 39.78 4.17
3760 4490 5.840715 TGCAGTGAATAAATTGAGTTGCAA 58.159 33.333 0.00 0.00 41.53 4.08
3761 4491 5.450592 TGCAGTGAATAAATTGAGTTGCA 57.549 34.783 0.00 0.00 0.00 4.08
3762 4492 6.671402 GCATTGCAGTGAATAAATTGAGTTGC 60.671 38.462 14.15 0.00 0.00 4.17
3766 4496 6.569228 CAGCATTGCAGTGAATAAATTGAG 57.431 37.500 14.15 0.00 0.00 3.02
3789 4519 1.012841 GCACAGAGGCAGTAGAATGC 58.987 55.000 0.00 0.00 45.74 3.56
3790 4520 2.687700 AGCACAGAGGCAGTAGAATG 57.312 50.000 0.00 0.00 35.83 2.67
3792 4522 4.826274 ATTAAGCACAGAGGCAGTAGAA 57.174 40.909 0.00 0.00 35.83 2.10
3795 4525 4.020218 ACTGAATTAAGCACAGAGGCAGTA 60.020 41.667 11.46 0.00 35.85 2.74
3798 4528 3.076621 CACTGAATTAAGCACAGAGGCA 58.923 45.455 11.46 0.00 35.85 4.75
3799 4529 3.077359 ACACTGAATTAAGCACAGAGGC 58.923 45.455 11.46 0.00 35.85 4.70
3801 4531 9.683069 AAATTTAACACTGAATTAAGCACAGAG 57.317 29.630 11.46 7.43 35.85 3.35
3802 4532 9.462174 CAAATTTAACACTGAATTAAGCACAGA 57.538 29.630 11.46 0.00 35.85 3.41
3803 4533 9.248291 ACAAATTTAACACTGAATTAAGCACAG 57.752 29.630 0.00 0.00 37.62 3.66
3804 4534 9.593134 AACAAATTTAACACTGAATTAAGCACA 57.407 25.926 0.00 0.00 0.00 4.57
3816 4546 7.224557 GCCAATTCAGTGAACAAATTTAACACT 59.775 33.333 7.96 14.20 41.52 3.55
3818 4548 7.044181 TGCCAATTCAGTGAACAAATTTAACA 58.956 30.769 7.96 0.00 0.00 2.41
3820 4550 8.674263 ATTGCCAATTCAGTGAACAAATTTAA 57.326 26.923 7.96 0.00 0.00 1.52
3821 4551 9.421806 CTATTGCCAATTCAGTGAACAAATTTA 57.578 29.630 7.96 0.00 0.00 1.40
3822 4552 8.149647 TCTATTGCCAATTCAGTGAACAAATTT 58.850 29.630 7.96 0.00 0.00 1.82
3823 4553 7.669427 TCTATTGCCAATTCAGTGAACAAATT 58.331 30.769 7.96 0.00 0.00 1.82
3825 4555 6.265196 ACTCTATTGCCAATTCAGTGAACAAA 59.735 34.615 7.96 0.00 0.00 2.83
3826 4556 5.769662 ACTCTATTGCCAATTCAGTGAACAA 59.230 36.000 7.96 8.32 0.00 2.83
3827 4557 5.316167 ACTCTATTGCCAATTCAGTGAACA 58.684 37.500 7.96 0.00 0.00 3.18
3828 4558 5.886960 ACTCTATTGCCAATTCAGTGAAC 57.113 39.130 7.96 0.00 0.00 3.18
3831 4855 6.108687 TCAGTACTCTATTGCCAATTCAGTG 58.891 40.000 9.93 1.05 0.00 3.66
3889 5359 9.838339 CTACTAGGAGTATTTCAAAATGACCAT 57.162 33.333 0.00 0.00 29.08 3.55
3890 5360 8.822805 ACTACTAGGAGTATTTCAAAATGACCA 58.177 33.333 5.58 0.00 29.08 4.02
3891 5361 9.668497 AACTACTAGGAGTATTTCAAAATGACC 57.332 33.333 8.40 0.00 29.08 4.02
3893 5363 9.162764 GCAACTACTAGGAGTATTTCAAAATGA 57.837 33.333 8.40 0.00 29.08 2.57
3894 5364 8.946085 TGCAACTACTAGGAGTATTTCAAAATG 58.054 33.333 8.40 0.43 29.08 2.32
3895 5365 8.947115 GTGCAACTACTAGGAGTATTTCAAAAT 58.053 33.333 8.40 0.00 29.08 1.82
3896 5366 7.934665 TGTGCAACTACTAGGAGTATTTCAAAA 59.065 33.333 8.40 0.00 38.04 2.44
3897 5367 7.446769 TGTGCAACTACTAGGAGTATTTCAAA 58.553 34.615 8.40 0.00 38.04 2.69
3898 5368 6.999950 TGTGCAACTACTAGGAGTATTTCAA 58.000 36.000 8.40 0.00 38.04 2.69
3899 5369 6.599356 TGTGCAACTACTAGGAGTATTTCA 57.401 37.500 8.40 3.63 38.04 2.69
3900 5370 6.036191 GCTTGTGCAACTACTAGGAGTATTTC 59.964 42.308 8.40 0.95 38.04 2.17
3944 5414 5.014858 AGGTTTGATCACTGCTGAATCATT 58.985 37.500 0.00 0.00 0.00 2.57
3945 5415 4.597004 AGGTTTGATCACTGCTGAATCAT 58.403 39.130 0.00 0.00 0.00 2.45
3946 5416 4.005650 GAGGTTTGATCACTGCTGAATCA 58.994 43.478 0.00 3.69 0.00 2.57
3947 5417 4.005650 TGAGGTTTGATCACTGCTGAATC 58.994 43.478 0.00 1.06 0.00 2.52
3948 5418 3.755378 GTGAGGTTTGATCACTGCTGAAT 59.245 43.478 0.00 0.00 43.03 2.57
3949 5419 3.141398 GTGAGGTTTGATCACTGCTGAA 58.859 45.455 0.00 0.00 43.03 3.02
3950 5420 2.104622 TGTGAGGTTTGATCACTGCTGA 59.895 45.455 0.00 0.00 45.87 4.26
3951 5421 2.497138 TGTGAGGTTTGATCACTGCTG 58.503 47.619 0.00 0.00 45.87 4.41
3952 5422 2.936919 TGTGAGGTTTGATCACTGCT 57.063 45.000 0.00 0.00 45.87 4.24
3953 5423 2.227388 CCTTGTGAGGTTTGATCACTGC 59.773 50.000 0.00 0.00 45.87 4.40
3954 5424 3.743521 TCCTTGTGAGGTTTGATCACTG 58.256 45.455 0.00 1.50 45.87 3.66
3968 5438 6.457355 TGACCAAATGAATCATTTCCTTGTG 58.543 36.000 17.42 7.10 41.40 3.33
3969 5439 6.669125 TGACCAAATGAATCATTTCCTTGT 57.331 33.333 17.42 12.23 41.40 3.16
3970 5440 7.095102 GGTTTGACCAAATGAATCATTTCCTTG 60.095 37.037 17.42 8.11 41.40 3.61
3971 5441 6.936335 GGTTTGACCAAATGAATCATTTCCTT 59.064 34.615 17.42 5.72 41.40 3.36
3972 5442 6.270695 AGGTTTGACCAAATGAATCATTTCCT 59.729 34.615 17.42 15.27 41.40 3.36
3973 5443 6.466812 AGGTTTGACCAAATGAATCATTTCC 58.533 36.000 17.42 13.50 41.40 3.13
3974 5444 8.087750 TGTAGGTTTGACCAAATGAATCATTTC 58.912 33.333 17.42 8.45 41.40 2.17
3975 5445 7.961351 TGTAGGTTTGACCAAATGAATCATTT 58.039 30.769 14.86 14.86 43.71 2.32
3976 5446 7.537596 TGTAGGTTTGACCAAATGAATCATT 57.462 32.000 2.07 2.07 41.95 2.57
3977 5447 7.309990 CCTTGTAGGTTTGACCAAATGAATCAT 60.310 37.037 0.00 0.00 41.95 2.45
3978 5448 6.015519 CCTTGTAGGTTTGACCAAATGAATCA 60.016 38.462 0.00 0.00 41.95 2.57
3979 5449 6.208599 TCCTTGTAGGTTTGACCAAATGAATC 59.791 38.462 0.00 0.00 41.95 2.52
3980 5450 6.074648 TCCTTGTAGGTTTGACCAAATGAAT 58.925 36.000 0.00 0.00 41.95 2.57
3981 5451 5.450453 TCCTTGTAGGTTTGACCAAATGAA 58.550 37.500 0.00 0.00 41.95 2.57
3982 5452 5.055265 TCCTTGTAGGTTTGACCAAATGA 57.945 39.130 0.00 0.00 41.95 2.57
3983 5453 5.782893 TTCCTTGTAGGTTTGACCAAATG 57.217 39.130 0.00 0.00 41.95 2.32
3984 5454 6.553100 TCATTTCCTTGTAGGTTTGACCAAAT 59.447 34.615 0.00 0.00 41.95 2.32
3985 5455 5.894393 TCATTTCCTTGTAGGTTTGACCAAA 59.106 36.000 0.00 0.00 41.95 3.28
3986 5456 5.450453 TCATTTCCTTGTAGGTTTGACCAA 58.550 37.500 0.00 0.00 41.95 3.67
3987 5457 5.055265 TCATTTCCTTGTAGGTTTGACCA 57.945 39.130 0.00 0.00 41.95 4.02
3988 5458 6.208599 TGAATCATTTCCTTGTAGGTTTGACC 59.791 38.462 0.00 0.00 36.53 4.02
3989 5459 7.214467 TGAATCATTTCCTTGTAGGTTTGAC 57.786 36.000 0.00 0.00 36.53 3.18
3990 5460 6.071952 GCTGAATCATTTCCTTGTAGGTTTGA 60.072 38.462 0.00 0.00 36.53 2.69
3991 5461 6.095377 GCTGAATCATTTCCTTGTAGGTTTG 58.905 40.000 0.00 0.00 36.53 2.93
3992 5462 5.774690 TGCTGAATCATTTCCTTGTAGGTTT 59.225 36.000 0.00 0.00 36.53 3.27
3993 5463 5.324409 TGCTGAATCATTTCCTTGTAGGTT 58.676 37.500 0.00 0.00 36.53 3.50
3994 5464 4.922206 TGCTGAATCATTTCCTTGTAGGT 58.078 39.130 0.00 0.00 36.53 3.08
3995 5465 5.644644 GTTGCTGAATCATTTCCTTGTAGG 58.355 41.667 0.00 0.00 36.46 3.18
3996 5466 5.122239 TCGTTGCTGAATCATTTCCTTGTAG 59.878 40.000 0.00 0.00 0.00 2.74
4027 5497 7.064866 AGGATCATTGCTGATTCATTTCCTTA 58.935 34.615 0.00 0.00 42.27 2.69
4032 5502 7.649533 TGTAAGGATCATTGCTGATTCATTT 57.350 32.000 9.55 0.00 42.27 2.32
4033 5503 7.649533 TTGTAAGGATCATTGCTGATTCATT 57.350 32.000 9.55 0.00 42.27 2.57
4088 5558 5.689514 CGACAGGATTTCTAGTGCAGATTAG 59.310 44.000 0.00 0.00 31.77 1.73
4106 5576 1.227527 TGTTGTGACAGCCGACAGG 60.228 57.895 0.00 0.00 41.62 4.00
4108 5578 0.107897 AAGTGTTGTGACAGCCGACA 60.108 50.000 0.00 0.00 36.20 4.35
4109 5579 0.582005 GAAGTGTTGTGACAGCCGAC 59.418 55.000 0.00 0.00 36.20 4.79
4110 5580 0.176910 TGAAGTGTTGTGACAGCCGA 59.823 50.000 0.00 0.00 36.20 5.54
4118 5588 4.188462 TGGTCACTACTTGAAGTGTTGTG 58.812 43.478 8.33 13.41 45.78 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.