Multiple sequence alignment - TraesCS7A01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G455900 chr7A 100.000 4559 0 0 1 4559 652294412 652289854 0.000000e+00 8419.0
1 TraesCS7A01G455900 chr7A 93.548 93 4 2 73 164 634098274 634098365 2.210000e-28 137.0
2 TraesCS7A01G455900 chr7A 90.816 98 6 3 69 165 41963165 41963070 1.330000e-25 128.0
3 TraesCS7A01G455900 chr7A 91.566 83 7 0 1 83 719648685 719648603 1.040000e-21 115.0
4 TraesCS7A01G455900 chr7A 91.566 83 7 0 1 83 719654175 719654093 1.040000e-21 115.0
5 TraesCS7A01G455900 chr7A 91.566 83 7 0 1 83 719668980 719668898 1.040000e-21 115.0
6 TraesCS7A01G455900 chr7A 91.667 84 5 2 1 83 719678354 719678272 1.040000e-21 115.0
7 TraesCS7A01G455900 chr7A 89.873 79 8 0 3875 3953 433736504 433736426 8.070000e-18 102.0
8 TraesCS7A01G455900 chr7B 89.914 2211 106 50 642 2751 617563150 617560956 0.000000e+00 2739.0
9 TraesCS7A01G455900 chr7B 84.872 899 66 27 3497 4377 617559994 617559148 0.000000e+00 843.0
10 TraesCS7A01G455900 chr7B 91.297 609 48 2 2781 3388 617560698 617560094 0.000000e+00 826.0
11 TraesCS7A01G455900 chr7B 81.292 449 43 24 495 941 617563264 617562855 4.400000e-85 326.0
12 TraesCS7A01G455900 chr7B 93.506 77 2 3 3385 3458 617560065 617559989 1.340000e-20 111.0
13 TraesCS7A01G455900 chr7B 91.463 82 6 1 2 83 704277539 704277619 1.340000e-20 111.0
14 TraesCS7A01G455900 chr7B 91.667 48 4 0 3712 3759 184914998 184914951 2.940000e-07 67.6
15 TraesCS7A01G455900 chr7D 90.464 1877 85 37 936 2751 566021385 566019542 0.000000e+00 2388.0
16 TraesCS7A01G455900 chr7D 89.385 1187 68 15 2774 3933 566019248 566018093 0.000000e+00 1441.0
17 TraesCS7A01G455900 chr7D 84.861 469 44 16 474 940 566021881 566021438 9.000000e-122 448.0
18 TraesCS7A01G455900 chr7D 89.062 256 21 4 4066 4317 566017542 566017290 1.230000e-80 311.0
19 TraesCS7A01G455900 chr7D 89.844 128 4 4 3943 4070 566018043 566017925 6.110000e-34 156.0
20 TraesCS7A01G455900 chr7D 91.089 101 6 3 81 179 581296353 581296254 2.860000e-27 134.0
21 TraesCS7A01G455900 chr7D 90.291 103 6 2 4438 4536 566017015 566016913 1.030000e-26 132.0
22 TraesCS7A01G455900 chr6B 91.411 163 10 3 166 327 444910769 444910610 2.140000e-53 220.0
23 TraesCS7A01G455900 chr6B 90.964 166 11 3 163 327 444921652 444921490 2.140000e-53 220.0
24 TraesCS7A01G455900 chr6B 86.885 183 18 5 163 344 615070116 615069939 2.780000e-47 200.0
25 TraesCS7A01G455900 chr6B 88.636 88 5 4 3877 3959 688305754 688305841 8.070000e-18 102.0
26 TraesCS7A01G455900 chr6B 88.889 81 9 0 3875 3955 615187022 615186942 2.900000e-17 100.0
27 TraesCS7A01G455900 chr6B 78.740 127 25 2 3713 3838 32126721 32126596 2.920000e-12 84.2
28 TraesCS7A01G455900 chr1D 90.361 166 15 1 163 328 261258627 261258791 2.760000e-52 217.0
29 TraesCS7A01G455900 chr2D 89.941 169 10 4 163 327 620880779 620880614 1.290000e-50 211.0
30 TraesCS7A01G455900 chr2B 88.889 171 13 5 163 332 42498465 42498300 5.980000e-49 206.0
31 TraesCS7A01G455900 chr3B 89.157 166 14 3 163 327 785614370 785614532 2.150000e-48 204.0
32 TraesCS7A01G455900 chr3B 89.157 166 14 3 163 327 804382578 804382416 2.150000e-48 204.0
33 TraesCS7A01G455900 chr3B 90.000 80 8 0 3875 3954 199529378 199529299 2.240000e-18 104.0
34 TraesCS7A01G455900 chr3D 89.157 166 11 4 163 327 597621097 597620938 2.780000e-47 200.0
35 TraesCS7A01G455900 chr3D 90.000 80 8 0 3875 3954 324311159 324311080 2.240000e-18 104.0
36 TraesCS7A01G455900 chr5A 93.750 96 5 1 71 165 801625 801720 4.750000e-30 143.0
37 TraesCS7A01G455900 chr5A 96.512 86 2 1 81 165 290406315 290406230 1.710000e-29 141.0
38 TraesCS7A01G455900 chr3A 95.402 87 3 1 81 166 495252685 495252599 2.210000e-28 137.0
39 TraesCS7A01G455900 chr3A 93.750 80 5 0 4 83 595439156 595439235 2.230000e-23 121.0
40 TraesCS7A01G455900 chr2A 90.196 102 7 3 66 165 69207539 69207639 3.700000e-26 130.0
41 TraesCS7A01G455900 chr2A 80.741 135 22 3 3705 3837 65052011 65052143 8.070000e-18 102.0
42 TraesCS7A01G455900 chr5D 87.500 112 10 4 58 165 456610459 456610348 4.790000e-25 126.0
43 TraesCS7A01G455900 chr5D 87.755 49 6 0 3710 3758 532636245 532636197 1.770000e-04 58.4
44 TraesCS7A01G455900 chr5B 87.387 111 10 4 81 187 609840398 609840288 1.720000e-24 124.0
45 TraesCS7A01G455900 chr1A 93.827 81 5 0 2 82 532712650 532712730 6.190000e-24 122.0
46 TraesCS7A01G455900 chr1A 87.356 87 11 0 3868 3954 394590630 394590544 2.900000e-17 100.0
47 TraesCS7A01G455900 chr1A 77.863 131 22 7 3710 3836 557422129 557422002 1.760000e-09 75.0
48 TraesCS7A01G455900 chr4A 91.566 83 7 0 1 83 64581157 64581075 1.040000e-21 115.0
49 TraesCS7A01G455900 chr4A 79.439 107 21 1 3721 3826 36609612 36609718 1.760000e-09 75.0
50 TraesCS7A01G455900 chr6A 91.566 83 6 1 1 83 5355816 5355897 3.730000e-21 113.0
51 TraesCS7A01G455900 chr4B 88.636 88 10 0 3867 3954 95869560 95869647 1.730000e-19 108.0
52 TraesCS7A01G455900 chr4B 97.368 38 1 0 3710 3747 489296295 489296332 1.060000e-06 65.8
53 TraesCS7A01G455900 chr1B 100.000 33 0 0 3709 3741 26400600 26400632 1.370000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G455900 chr7A 652289854 652294412 4558 True 8419.000000 8419 100.0000 1 4559 1 chr7A.!!$R3 4558
1 TraesCS7A01G455900 chr7B 617559148 617563264 4116 True 969.000000 2739 88.1762 495 4377 5 chr7B.!!$R2 3882
2 TraesCS7A01G455900 chr7D 566016913 566021881 4968 True 812.666667 2388 88.9845 474 4536 6 chr7D.!!$R2 4062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 522 0.033894 ATGATAAAAACGGCCCGGGT 60.034 50.000 24.63 1.77 0.00 5.28 F
607 608 0.461870 CGCTCCATGTTTCGATCCCA 60.462 55.000 0.00 0.00 0.00 4.37 F
619 620 1.069258 GATCCCATTCCGTCCCGTC 59.931 63.158 0.00 0.00 0.00 4.79 F
1394 1512 1.202568 TCCTGAATTCGCAGCATCGAT 60.203 47.619 0.04 0.00 38.37 3.59 F
2953 3378 0.466124 GTCCCCAGTGAGAGCCATAC 59.534 60.000 0.00 0.00 0.00 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1902 1.132500 AATAGGTAGGAGCAGGGCAC 58.868 55.000 0.00 0.0 0.00 5.01 R
1845 1974 3.192466 GCCAAAGCAAATGCCATTCTAG 58.808 45.455 0.94 0.0 43.38 2.43 R
2531 2681 3.617284 TCTCAGCAAGCAATCATGTCAT 58.383 40.909 0.00 0.0 0.00 3.06 R
3346 3773 0.895100 AATGCTGTGTGGCCACGAAT 60.895 50.000 30.07 13.9 44.92 3.34 R
4493 5614 0.250295 ACCGGTCCATGTCAACACAG 60.250 55.000 0.00 0.0 35.41 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.457436 TTGGTAAGTCATTAAATTCTTACTCCC 57.543 33.333 17.85 9.12 40.80 4.30
87 88 8.832735 TGGTAAGTCATTAAATTCTTACTCCCT 58.167 33.333 17.85 0.00 40.80 4.20
88 89 9.327628 GGTAAGTCATTAAATTCTTACTCCCTC 57.672 37.037 17.85 6.12 40.80 4.30
91 92 8.152023 AGTCATTAAATTCTTACTCCCTCTGT 57.848 34.615 0.00 0.00 0.00 3.41
92 93 9.268282 AGTCATTAAATTCTTACTCCCTCTGTA 57.732 33.333 0.00 0.00 0.00 2.74
93 94 9.886132 GTCATTAAATTCTTACTCCCTCTGTAA 57.114 33.333 0.00 0.00 0.00 2.41
156 157 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
157 158 7.704789 AAACGCTCTTATATTAGTTTACGGG 57.295 36.000 0.00 0.00 31.14 5.28
158 159 5.776744 ACGCTCTTATATTAGTTTACGGGG 58.223 41.667 0.00 0.00 0.00 5.73
159 160 5.536161 ACGCTCTTATATTAGTTTACGGGGA 59.464 40.000 0.00 0.00 0.00 4.81
160 161 6.040842 ACGCTCTTATATTAGTTTACGGGGAA 59.959 38.462 0.00 0.00 0.00 3.97
161 162 6.585322 CGCTCTTATATTAGTTTACGGGGAAG 59.415 42.308 0.00 0.00 0.00 3.46
162 163 7.440198 GCTCTTATATTAGTTTACGGGGAAGT 58.560 38.462 0.00 0.00 0.00 3.01
163 164 8.579863 GCTCTTATATTAGTTTACGGGGAAGTA 58.420 37.037 0.00 0.00 0.00 2.24
164 165 9.905171 CTCTTATATTAGTTTACGGGGAAGTAC 57.095 37.037 0.00 0.00 0.00 2.73
165 166 8.860088 TCTTATATTAGTTTACGGGGAAGTACC 58.140 37.037 0.00 0.00 38.08 3.34
166 167 8.546083 TTATATTAGTTTACGGGGAAGTACCA 57.454 34.615 0.00 0.00 41.20 3.25
167 168 5.760484 ATTAGTTTACGGGGAAGTACCAA 57.240 39.130 0.00 0.00 41.20 3.67
168 169 5.559148 TTAGTTTACGGGGAAGTACCAAA 57.441 39.130 0.00 0.00 41.20 3.28
169 170 4.645863 AGTTTACGGGGAAGTACCAAAT 57.354 40.909 0.00 0.00 41.20 2.32
170 171 5.760484 AGTTTACGGGGAAGTACCAAATA 57.240 39.130 0.00 0.00 41.20 1.40
171 172 6.125589 AGTTTACGGGGAAGTACCAAATAA 57.874 37.500 0.00 0.00 41.20 1.40
172 173 6.175471 AGTTTACGGGGAAGTACCAAATAAG 58.825 40.000 0.00 0.00 41.20 1.73
173 174 5.760484 TTACGGGGAAGTACCAAATAAGT 57.240 39.130 0.00 0.00 41.20 2.24
174 175 3.946606 ACGGGGAAGTACCAAATAAGTG 58.053 45.455 0.00 0.00 41.20 3.16
175 176 2.681344 CGGGGAAGTACCAAATAAGTGC 59.319 50.000 0.00 0.00 41.20 4.40
176 177 3.621461 CGGGGAAGTACCAAATAAGTGCT 60.621 47.826 0.00 0.00 41.20 4.40
177 178 4.341487 GGGGAAGTACCAAATAAGTGCTT 58.659 43.478 0.00 0.00 41.97 3.91
178 179 5.503002 GGGGAAGTACCAAATAAGTGCTTA 58.497 41.667 0.00 0.00 39.79 3.09
179 180 5.947566 GGGGAAGTACCAAATAAGTGCTTAA 59.052 40.000 0.00 0.00 39.79 1.85
180 181 6.127814 GGGGAAGTACCAAATAAGTGCTTAAC 60.128 42.308 0.00 0.00 39.79 2.01
181 182 6.431852 GGGAAGTACCAAATAAGTGCTTAACA 59.568 38.462 0.00 0.00 39.79 2.41
182 183 7.040271 GGGAAGTACCAAATAAGTGCTTAACAA 60.040 37.037 0.00 0.00 39.79 2.83
183 184 8.520351 GGAAGTACCAAATAAGTGCTTAACAAT 58.480 33.333 0.00 0.00 39.79 2.71
211 212 8.867112 AATGACAAGTAAATCATGATGATTGC 57.133 30.769 20.30 15.68 45.57 3.56
212 213 7.393841 TGACAAGTAAATCATGATGATTGCA 57.606 32.000 20.30 9.56 45.57 4.08
213 214 8.002984 TGACAAGTAAATCATGATGATTGCAT 57.997 30.769 20.30 8.50 45.57 3.96
214 215 9.122779 TGACAAGTAAATCATGATGATTGCATA 57.877 29.630 20.30 7.56 45.57 3.14
215 216 9.390795 GACAAGTAAATCATGATGATTGCATAC 57.609 33.333 20.30 17.54 45.57 2.39
216 217 8.905850 ACAAGTAAATCATGATGATTGCATACA 58.094 29.630 20.30 1.14 45.57 2.29
217 218 9.738832 CAAGTAAATCATGATGATTGCATACAA 57.261 29.630 20.30 0.00 45.57 2.41
241 242 3.477899 AACTTGCTGAGATTTTAGCGC 57.522 42.857 0.00 0.00 42.74 5.92
242 243 2.426522 ACTTGCTGAGATTTTAGCGCA 58.573 42.857 11.47 0.00 42.74 6.09
243 244 3.012518 ACTTGCTGAGATTTTAGCGCAT 58.987 40.909 11.47 0.00 42.74 4.73
244 245 3.064545 ACTTGCTGAGATTTTAGCGCATC 59.935 43.478 11.47 3.31 42.74 3.91
245 246 2.631267 TGCTGAGATTTTAGCGCATCA 58.369 42.857 11.47 0.85 42.74 3.07
246 247 3.009026 TGCTGAGATTTTAGCGCATCAA 58.991 40.909 11.47 0.00 42.74 2.57
247 248 3.628942 TGCTGAGATTTTAGCGCATCAAT 59.371 39.130 11.47 3.61 42.74 2.57
248 249 4.815846 TGCTGAGATTTTAGCGCATCAATA 59.184 37.500 11.47 0.00 42.74 1.90
249 250 5.471116 TGCTGAGATTTTAGCGCATCAATAT 59.529 36.000 11.47 0.68 42.74 1.28
250 251 6.650390 TGCTGAGATTTTAGCGCATCAATATA 59.350 34.615 11.47 0.00 42.74 0.86
251 252 7.173047 TGCTGAGATTTTAGCGCATCAATATAA 59.827 33.333 11.47 0.00 42.74 0.98
252 253 8.180267 GCTGAGATTTTAGCGCATCAATATAAT 58.820 33.333 11.47 0.00 0.00 1.28
261 262 9.797556 TTAGCGCATCAATATAATAATAGACGT 57.202 29.630 11.47 0.00 0.00 4.34
262 263 8.120030 AGCGCATCAATATAATAATAGACGTG 57.880 34.615 11.47 0.00 0.00 4.49
263 264 6.841286 GCGCATCAATATAATAATAGACGTGC 59.159 38.462 0.30 0.00 0.00 5.34
264 265 7.464045 GCGCATCAATATAATAATAGACGTGCA 60.464 37.037 0.30 0.00 0.00 4.57
265 266 8.052490 CGCATCAATATAATAATAGACGTGCAG 58.948 37.037 0.00 0.00 0.00 4.41
266 267 8.873830 GCATCAATATAATAATAGACGTGCAGT 58.126 33.333 0.00 0.00 0.00 4.40
276 277 3.678921 ACGTGCAGTCACAAGCTAA 57.321 47.368 0.00 0.00 43.28 3.09
277 278 1.217882 ACGTGCAGTCACAAGCTAAC 58.782 50.000 0.00 0.00 43.28 2.34
278 279 1.202533 ACGTGCAGTCACAAGCTAACT 60.203 47.619 0.00 0.00 43.28 2.24
279 280 2.035449 ACGTGCAGTCACAAGCTAACTA 59.965 45.455 0.00 0.00 43.28 2.24
280 281 2.408704 CGTGCAGTCACAAGCTAACTAC 59.591 50.000 0.00 0.00 43.28 2.73
281 282 3.654414 GTGCAGTCACAAGCTAACTACT 58.346 45.455 0.00 0.00 42.66 2.57
282 283 4.615223 CGTGCAGTCACAAGCTAACTACTA 60.615 45.833 0.00 0.00 43.28 1.82
283 284 4.859798 GTGCAGTCACAAGCTAACTACTAG 59.140 45.833 0.00 0.00 42.66 2.57
284 285 4.765339 TGCAGTCACAAGCTAACTACTAGA 59.235 41.667 0.00 0.00 0.00 2.43
285 286 5.243060 TGCAGTCACAAGCTAACTACTAGAA 59.757 40.000 0.00 0.00 0.00 2.10
286 287 6.071334 TGCAGTCACAAGCTAACTACTAGAAT 60.071 38.462 0.00 0.00 0.00 2.40
287 288 6.254589 GCAGTCACAAGCTAACTACTAGAATG 59.745 42.308 0.00 0.00 0.00 2.67
288 289 7.316640 CAGTCACAAGCTAACTACTAGAATGT 58.683 38.462 0.00 0.00 31.64 2.71
289 290 7.815068 CAGTCACAAGCTAACTACTAGAATGTT 59.185 37.037 0.00 0.99 30.03 2.71
290 291 8.368668 AGTCACAAGCTAACTACTAGAATGTTT 58.631 33.333 0.00 0.00 30.03 2.83
291 292 8.436200 GTCACAAGCTAACTACTAGAATGTTTG 58.564 37.037 0.00 1.10 30.03 2.93
292 293 8.148351 TCACAAGCTAACTACTAGAATGTTTGT 58.852 33.333 0.00 0.00 30.03 2.83
293 294 9.419297 CACAAGCTAACTACTAGAATGTTTGTA 57.581 33.333 0.00 0.00 30.03 2.41
294 295 9.420551 ACAAGCTAACTACTAGAATGTTTGTAC 57.579 33.333 0.00 0.00 28.79 2.90
295 296 9.640963 CAAGCTAACTACTAGAATGTTTGTACT 57.359 33.333 0.00 0.00 0.00 2.73
297 298 9.857957 AGCTAACTACTAGAATGTTTGTACTTC 57.142 33.333 0.00 0.00 0.00 3.01
298 299 9.085250 GCTAACTACTAGAATGTTTGTACTTCC 57.915 37.037 0.00 0.00 0.00 3.46
299 300 9.583765 CTAACTACTAGAATGTTTGTACTTCCC 57.416 37.037 0.00 0.00 0.00 3.97
300 301 6.628185 ACTACTAGAATGTTTGTACTTCCCG 58.372 40.000 0.00 0.00 0.00 5.14
301 302 5.479124 ACTAGAATGTTTGTACTTCCCGT 57.521 39.130 0.00 0.00 0.00 5.28
302 303 5.861727 ACTAGAATGTTTGTACTTCCCGTT 58.138 37.500 0.00 0.00 0.00 4.44
303 304 6.996509 ACTAGAATGTTTGTACTTCCCGTTA 58.003 36.000 0.00 0.00 0.00 3.18
304 305 6.870439 ACTAGAATGTTTGTACTTCCCGTTAC 59.130 38.462 0.00 0.00 0.00 2.50
305 306 5.613329 AGAATGTTTGTACTTCCCGTTACA 58.387 37.500 0.00 0.00 0.00 2.41
306 307 6.056884 AGAATGTTTGTACTTCCCGTTACAA 58.943 36.000 0.00 0.00 0.00 2.41
307 308 5.678132 ATGTTTGTACTTCCCGTTACAAC 57.322 39.130 0.00 0.00 32.88 3.32
316 317 3.339464 CGTTACAACGCACGGGCA 61.339 61.111 11.77 0.00 46.06 5.36
317 318 2.883468 CGTTACAACGCACGGGCAA 61.883 57.895 11.77 0.00 46.06 4.52
318 319 1.577421 GTTACAACGCACGGGCAAT 59.423 52.632 11.77 0.00 41.24 3.56
319 320 0.039888 GTTACAACGCACGGGCAATT 60.040 50.000 11.77 0.00 41.24 2.32
320 321 0.039978 TTACAACGCACGGGCAATTG 60.040 50.000 19.24 19.24 41.24 2.32
321 322 1.167155 TACAACGCACGGGCAATTGT 61.167 50.000 26.72 26.72 45.63 2.71
322 323 1.729131 CAACGCACGGGCAATTGTC 60.729 57.895 11.77 3.95 41.24 3.18
323 324 1.896660 AACGCACGGGCAATTGTCT 60.897 52.632 11.77 0.00 41.24 3.41
324 325 0.604243 AACGCACGGGCAATTGTCTA 60.604 50.000 11.77 0.00 41.24 2.59
325 326 1.019278 ACGCACGGGCAATTGTCTAG 61.019 55.000 11.77 7.23 41.24 2.43
326 327 1.019278 CGCACGGGCAATTGTCTAGT 61.019 55.000 11.77 7.88 41.24 2.57
327 328 1.165270 GCACGGGCAATTGTCTAGTT 58.835 50.000 3.77 0.00 40.72 2.24
328 329 2.352388 GCACGGGCAATTGTCTAGTTA 58.648 47.619 3.77 0.00 40.72 2.24
329 330 2.943033 GCACGGGCAATTGTCTAGTTAT 59.057 45.455 3.77 0.00 40.72 1.89
330 331 3.377172 GCACGGGCAATTGTCTAGTTATT 59.623 43.478 3.77 0.00 40.72 1.40
331 332 4.573201 GCACGGGCAATTGTCTAGTTATTA 59.427 41.667 3.77 0.00 40.72 0.98
332 333 5.277345 GCACGGGCAATTGTCTAGTTATTAG 60.277 44.000 3.77 0.54 40.72 1.73
333 334 5.236478 CACGGGCAATTGTCTAGTTATTAGG 59.764 44.000 10.38 0.00 0.00 2.69
334 335 5.104652 ACGGGCAATTGTCTAGTTATTAGGT 60.105 40.000 10.38 0.00 0.00 3.08
335 336 6.098695 ACGGGCAATTGTCTAGTTATTAGGTA 59.901 38.462 10.38 0.00 0.00 3.08
336 337 6.987992 CGGGCAATTGTCTAGTTATTAGGTAA 59.012 38.462 10.38 0.00 0.00 2.85
337 338 7.496591 CGGGCAATTGTCTAGTTATTAGGTAAA 59.503 37.037 10.38 0.00 0.00 2.01
338 339 8.837389 GGGCAATTGTCTAGTTATTAGGTAAAG 58.163 37.037 10.38 0.00 0.00 1.85
339 340 9.609346 GGCAATTGTCTAGTTATTAGGTAAAGA 57.391 33.333 7.40 0.00 0.00 2.52
345 346 9.309516 TGTCTAGTTATTAGGTAAAGATTTGCG 57.690 33.333 0.00 0.00 0.00 4.85
346 347 9.310716 GTCTAGTTATTAGGTAAAGATTTGCGT 57.689 33.333 0.00 0.00 0.00 5.24
347 348 9.309516 TCTAGTTATTAGGTAAAGATTTGCGTG 57.690 33.333 0.00 0.00 0.00 5.34
348 349 7.916914 AGTTATTAGGTAAAGATTTGCGTGT 57.083 32.000 0.00 0.00 0.00 4.49
349 350 7.971455 AGTTATTAGGTAAAGATTTGCGTGTC 58.029 34.615 0.00 0.00 0.00 3.67
350 351 5.813080 ATTAGGTAAAGATTTGCGTGTCC 57.187 39.130 0.00 0.00 0.00 4.02
351 352 3.134574 AGGTAAAGATTTGCGTGTCCA 57.865 42.857 0.00 0.00 0.00 4.02
352 353 3.074412 AGGTAAAGATTTGCGTGTCCAG 58.926 45.455 0.00 0.00 0.00 3.86
353 354 3.071479 GGTAAAGATTTGCGTGTCCAGA 58.929 45.455 0.00 0.00 0.00 3.86
354 355 3.120304 GGTAAAGATTTGCGTGTCCAGAC 60.120 47.826 0.00 0.00 0.00 3.51
355 356 1.148310 AAGATTTGCGTGTCCAGACG 58.852 50.000 0.00 0.00 42.42 4.18
361 362 2.880879 CGTGTCCAGACGCATCCG 60.881 66.667 11.57 0.00 41.62 4.18
362 363 3.188786 GTGTCCAGACGCATCCGC 61.189 66.667 6.48 0.00 41.22 5.54
363 364 4.451150 TGTCCAGACGCATCCGCC 62.451 66.667 0.00 0.00 38.22 6.13
364 365 4.451150 GTCCAGACGCATCCGCCA 62.451 66.667 0.00 0.00 38.22 5.69
365 366 4.147449 TCCAGACGCATCCGCCAG 62.147 66.667 0.00 0.00 38.22 4.85
368 369 4.166888 AGACGCATCCGCCAGCAT 62.167 61.111 0.00 0.00 38.22 3.79
369 370 3.945434 GACGCATCCGCCAGCATG 61.945 66.667 0.00 0.00 38.22 4.06
386 387 6.470557 CAGCATGGTCAGGTTTTTATTTTG 57.529 37.500 0.00 0.00 0.00 2.44
387 388 5.409214 CAGCATGGTCAGGTTTTTATTTTGG 59.591 40.000 0.00 0.00 0.00 3.28
388 389 4.154015 GCATGGTCAGGTTTTTATTTTGGC 59.846 41.667 0.00 0.00 0.00 4.52
389 390 5.303971 CATGGTCAGGTTTTTATTTTGGCA 58.696 37.500 0.00 0.00 0.00 4.92
390 391 5.359194 TGGTCAGGTTTTTATTTTGGCAA 57.641 34.783 0.00 0.00 0.00 4.52
391 392 5.745227 TGGTCAGGTTTTTATTTTGGCAAA 58.255 33.333 8.93 8.93 0.00 3.68
392 393 6.180472 TGGTCAGGTTTTTATTTTGGCAAAA 58.820 32.000 25.94 25.94 34.41 2.44
393 394 6.317391 TGGTCAGGTTTTTATTTTGGCAAAAG 59.683 34.615 27.21 12.63 33.22 2.27
394 395 6.198687 GTCAGGTTTTTATTTTGGCAAAAGC 58.801 36.000 27.21 14.74 37.89 3.51
395 396 5.882557 TCAGGTTTTTATTTTGGCAAAAGCA 59.117 32.000 27.21 16.43 39.34 3.91
396 397 6.545298 TCAGGTTTTTATTTTGGCAAAAGCAT 59.455 30.769 27.21 15.34 39.34 3.79
397 398 6.637658 CAGGTTTTTATTTTGGCAAAAGCATG 59.362 34.615 27.21 16.51 39.34 4.06
398 399 5.919707 GGTTTTTATTTTGGCAAAAGCATGG 59.080 36.000 27.21 0.00 37.67 3.66
399 400 4.762956 TTTATTTTGGCAAAAGCATGGC 57.237 36.364 27.21 4.15 45.44 4.40
403 404 2.266689 GGCAAAAGCATGGCCAGG 59.733 61.111 14.45 14.45 46.92 4.45
404 405 2.586293 GGCAAAAGCATGGCCAGGT 61.586 57.895 20.22 10.10 46.92 4.00
405 406 1.372307 GCAAAAGCATGGCCAGGTT 59.628 52.632 20.22 10.77 0.00 3.50
406 407 0.250424 GCAAAAGCATGGCCAGGTTT 60.250 50.000 20.22 17.16 38.22 3.27
407 408 1.515081 CAAAAGCATGGCCAGGTTTG 58.485 50.000 20.43 17.97 36.86 2.93
409 410 1.482748 AAAGCATGGCCAGGTTTGGG 61.483 55.000 20.43 0.00 45.16 4.12
410 411 2.604382 GCATGGCCAGGTTTGGGT 60.604 61.111 20.22 0.00 45.16 4.51
411 412 2.216331 GCATGGCCAGGTTTGGGTT 61.216 57.895 20.22 0.00 45.16 4.11
412 413 1.672898 CATGGCCAGGTTTGGGTTG 59.327 57.895 13.05 0.00 45.16 3.77
413 414 0.831288 CATGGCCAGGTTTGGGTTGA 60.831 55.000 13.05 0.00 45.16 3.18
414 415 0.105246 ATGGCCAGGTTTGGGTTGAA 60.105 50.000 13.05 0.00 45.16 2.69
415 416 0.758685 TGGCCAGGTTTGGGTTGAAG 60.759 55.000 0.00 0.00 45.16 3.02
416 417 1.471829 GGCCAGGTTTGGGTTGAAGG 61.472 60.000 0.00 0.00 45.16 3.46
417 418 2.049435 CCAGGTTTGGGTTGAAGGC 58.951 57.895 0.00 0.00 41.05 4.35
418 419 1.659794 CAGGTTTGGGTTGAAGGCG 59.340 57.895 0.00 0.00 0.00 5.52
419 420 1.106944 CAGGTTTGGGTTGAAGGCGT 61.107 55.000 0.00 0.00 0.00 5.68
420 421 1.106944 AGGTTTGGGTTGAAGGCGTG 61.107 55.000 0.00 0.00 0.00 5.34
421 422 1.362355 GTTTGGGTTGAAGGCGTGG 59.638 57.895 0.00 0.00 0.00 4.94
422 423 1.104577 GTTTGGGTTGAAGGCGTGGA 61.105 55.000 0.00 0.00 0.00 4.02
423 424 0.178975 TTTGGGTTGAAGGCGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
424 425 0.178975 TTGGGTTGAAGGCGTGGATT 60.179 50.000 0.00 0.00 0.00 3.01
425 426 0.893270 TGGGTTGAAGGCGTGGATTG 60.893 55.000 0.00 0.00 0.00 2.67
426 427 1.595093 GGGTTGAAGGCGTGGATTGG 61.595 60.000 0.00 0.00 0.00 3.16
427 428 0.608035 GGTTGAAGGCGTGGATTGGA 60.608 55.000 0.00 0.00 0.00 3.53
428 429 1.463674 GTTGAAGGCGTGGATTGGAT 58.536 50.000 0.00 0.00 0.00 3.41
429 430 2.639065 GTTGAAGGCGTGGATTGGATA 58.361 47.619 0.00 0.00 0.00 2.59
430 431 2.325583 TGAAGGCGTGGATTGGATAC 57.674 50.000 0.00 0.00 0.00 2.24
431 432 1.134220 TGAAGGCGTGGATTGGATACC 60.134 52.381 0.00 0.00 0.00 2.73
432 433 0.182775 AAGGCGTGGATTGGATACCC 59.817 55.000 0.00 0.00 0.00 3.69
433 434 0.986019 AGGCGTGGATTGGATACCCA 60.986 55.000 0.00 0.00 41.64 4.51
434 435 0.110486 GGCGTGGATTGGATACCCAT 59.890 55.000 0.00 0.00 43.12 4.00
435 436 1.238439 GCGTGGATTGGATACCCATG 58.762 55.000 0.00 0.00 43.12 3.66
436 437 1.202758 GCGTGGATTGGATACCCATGA 60.203 52.381 0.00 0.00 43.12 3.07
437 438 2.771089 CGTGGATTGGATACCCATGAG 58.229 52.381 0.00 0.00 43.12 2.90
438 439 2.104792 CGTGGATTGGATACCCATGAGT 59.895 50.000 0.00 0.00 43.12 3.41
439 440 3.323691 CGTGGATTGGATACCCATGAGTA 59.676 47.826 0.00 0.00 43.12 2.59
440 441 4.020218 CGTGGATTGGATACCCATGAGTAT 60.020 45.833 0.00 0.00 43.12 2.12
441 442 5.491982 GTGGATTGGATACCCATGAGTATC 58.508 45.833 16.78 16.78 45.26 2.24
456 457 5.925506 TGAGTATCATAGGGTTTGTCGAA 57.074 39.130 0.00 0.00 42.56 3.71
457 458 6.288941 TGAGTATCATAGGGTTTGTCGAAA 57.711 37.500 0.00 0.00 42.56 3.46
458 459 6.103997 TGAGTATCATAGGGTTTGTCGAAAC 58.896 40.000 0.00 0.00 42.56 2.78
472 473 8.601243 GTTTGTCGAAACCTATCAACATAATG 57.399 34.615 0.00 0.00 36.24 1.90
477 478 7.696453 GTCGAAACCTATCAACATAATGGTTTG 59.304 37.037 11.88 5.87 44.57 2.93
484 485 9.573166 CCTATCAACATAATGGTTTGGAAGATA 57.427 33.333 0.00 0.00 0.00 1.98
497 498 4.855715 TGGAAGATATCAAGGCGAGTAG 57.144 45.455 5.32 0.00 0.00 2.57
505 506 2.176045 TCAAGGCGAGTAGTCCAATGA 58.824 47.619 0.00 0.00 0.00 2.57
517 518 2.758423 AGTCCAATGATAAAAACGGCCC 59.242 45.455 0.00 0.00 0.00 5.80
521 522 0.033894 ATGATAAAAACGGCCCGGGT 60.034 50.000 24.63 1.77 0.00 5.28
595 596 4.172512 CAGAGGCAGGCGCTCCAT 62.173 66.667 7.64 0.00 38.60 3.41
596 597 4.172512 AGAGGCAGGCGCTCCATG 62.173 66.667 7.64 2.52 38.60 3.66
597 598 4.479993 GAGGCAGGCGCTCCATGT 62.480 66.667 7.64 0.00 38.60 3.21
601 602 2.787249 CAGGCGCTCCATGTTTCG 59.213 61.111 7.64 0.00 33.74 3.46
602 603 1.741401 CAGGCGCTCCATGTTTCGA 60.741 57.895 7.64 0.00 33.74 3.71
603 604 1.091771 CAGGCGCTCCATGTTTCGAT 61.092 55.000 7.64 0.00 33.74 3.59
604 605 0.811616 AGGCGCTCCATGTTTCGATC 60.812 55.000 7.64 0.00 33.74 3.69
605 606 1.643832 GCGCTCCATGTTTCGATCC 59.356 57.895 0.00 0.00 0.00 3.36
606 607 1.776034 GCGCTCCATGTTTCGATCCC 61.776 60.000 0.00 0.00 0.00 3.85
607 608 0.461870 CGCTCCATGTTTCGATCCCA 60.462 55.000 0.00 0.00 0.00 4.37
619 620 1.069258 GATCCCATTCCGTCCCGTC 59.931 63.158 0.00 0.00 0.00 4.79
620 621 2.379030 GATCCCATTCCGTCCCGTCC 62.379 65.000 0.00 0.00 0.00 4.79
621 622 4.171103 CCCATTCCGTCCCGTCCC 62.171 72.222 0.00 0.00 0.00 4.46
622 623 4.171103 CCATTCCGTCCCGTCCCC 62.171 72.222 0.00 0.00 0.00 4.81
716 717 4.465446 CTCCTCCCGCTCCCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
899 916 3.382832 CACCTCCGAACCCGAGCT 61.383 66.667 0.00 0.00 38.22 4.09
914 931 4.244802 GCTCCGACGCCGAGAGAG 62.245 72.222 12.31 3.17 36.12 3.20
917 934 3.125573 CCGACGCCGAGAGAGACA 61.126 66.667 0.00 0.00 38.22 3.41
957 1031 4.254709 TCGTTGGCCTGCTGCACT 62.255 61.111 3.32 0.00 43.89 4.40
970 1044 4.386413 GCACTGCTTGCCTACTGT 57.614 55.556 0.00 0.00 46.63 3.55
1011 1085 2.959030 GAGAGCCCCAATGGTAATTTCC 59.041 50.000 0.00 0.00 36.04 3.13
1017 1091 4.808042 CCCCAATGGTAATTTCCATCTCT 58.192 43.478 16.10 0.00 46.14 3.10
1059 1133 5.787953 TGAACATTTCAAATCTTCAGCCA 57.212 34.783 0.00 0.00 36.59 4.75
1061 1135 6.218019 TGAACATTTCAAATCTTCAGCCAAG 58.782 36.000 0.00 0.00 36.59 3.61
1091 1165 5.621197 TGTGATACAACTGTGTTTATGCC 57.379 39.130 0.00 0.00 39.30 4.40
1092 1166 4.457603 TGTGATACAACTGTGTTTATGCCC 59.542 41.667 0.00 0.00 39.30 5.36
1130 1238 4.597004 ACATGAATGAAGAGCAACCTCAT 58.403 39.130 0.00 0.00 40.68 2.90
1132 1240 2.751259 TGAATGAAGAGCAACCTCATGC 59.249 45.455 0.00 0.00 46.78 4.06
1330 1448 4.291792 TCCCCATCATCATGCAGAAAATT 58.708 39.130 0.00 0.00 0.00 1.82
1384 1502 8.741101 TTGTAATTTTTCATGTCCTGAATTCG 57.259 30.769 0.04 0.00 43.30 3.34
1391 1509 1.372582 TGTCCTGAATTCGCAGCATC 58.627 50.000 0.04 0.00 34.56 3.91
1394 1512 1.202568 TCCTGAATTCGCAGCATCGAT 60.203 47.619 0.04 0.00 38.37 3.59
1498 1621 6.473397 AACACGATTGATCTTTCTCAACTC 57.527 37.500 0.00 0.00 37.93 3.01
1532 1661 2.293122 TGTGCTTACCTGTGAACATTGC 59.707 45.455 0.00 0.00 0.00 3.56
1584 1713 8.834465 CATAATGCAGAAGCTGTTATTTACTCT 58.166 33.333 0.00 0.00 42.74 3.24
1723 1852 7.413328 CGAATTGCTCACATTCTTGATGAACTA 60.413 37.037 0.00 0.00 39.15 2.24
1773 1902 7.442656 AGTAATAAACCAGGGATCTATGTTCG 58.557 38.462 0.00 0.00 0.00 3.95
1810 1939 3.710209 ATTGTCTTCACTCTTCAGGGG 57.290 47.619 0.00 0.00 0.00 4.79
1811 1940 2.398754 TGTCTTCACTCTTCAGGGGA 57.601 50.000 0.00 0.00 0.00 4.81
1827 1956 9.578576 TCTTCAGGGGATTATCATATCTTTTTG 57.421 33.333 0.00 0.00 0.00 2.44
1828 1957 9.578576 CTTCAGGGGATTATCATATCTTTTTGA 57.421 33.333 0.00 0.00 0.00 2.69
1841 1970 9.513906 TCATATCTTTTTGACATTCTTGTGGTA 57.486 29.630 0.00 0.00 35.79 3.25
2043 2180 4.931601 CGACTTGAAGTCTCATTGAATGGA 59.068 41.667 21.61 0.00 42.92 3.41
2254 2391 7.174599 GCATAGCCTTGTCTGATTGATTATTCT 59.825 37.037 0.00 0.00 0.00 2.40
2390 2527 6.205853 TGCGAAATGTAGAAAATTGGTGTAGT 59.794 34.615 0.00 0.00 0.00 2.73
2418 2555 8.791327 TCAGATTGTGCAAGATAGATTGTTTA 57.209 30.769 0.00 0.00 32.56 2.01
2444 2581 5.744666 TCAGTAACTTAAACAACACAGCC 57.255 39.130 0.00 0.00 0.00 4.85
2485 2635 4.818005 TGCAGCCTGACATTGATAATAGTG 59.182 41.667 0.00 0.00 0.00 2.74
2515 2665 8.134895 TGTGTCTTTGTCAATAATTTGAGTTCC 58.865 33.333 0.00 0.00 42.41 3.62
2547 2697 7.223971 ACATTATTTGATGACATGATTGCTTGC 59.776 33.333 0.00 0.00 0.00 4.01
2579 2730 7.414540 GGGCATCATTACTTCTTTGAAGTGTAG 60.415 40.741 19.47 10.66 0.00 2.74
2592 2743 7.719633 TCTTTGAAGTGTAGCCTGAACTAAAAT 59.280 33.333 0.00 0.00 0.00 1.82
2598 2749 9.515226 AAGTGTAGCCTGAACTAAAATAAATGA 57.485 29.630 0.00 0.00 0.00 2.57
2627 2779 8.974060 TCTTTTCTGTGAACCTGTATTAAACT 57.026 30.769 0.00 0.00 0.00 2.66
2630 2782 8.740123 TTTCTGTGAACCTGTATTAAACTCAA 57.260 30.769 0.00 0.00 0.00 3.02
2712 2864 7.497249 GCACAATCTATCTGTTCTGGTAATTCT 59.503 37.037 0.00 0.00 0.00 2.40
2715 2867 6.798427 TCTATCTGTTCTGGTAATTCTGCT 57.202 37.500 0.00 0.00 0.00 4.24
2721 2873 2.621338 TCTGGTAATTCTGCTTGCTCG 58.379 47.619 0.00 0.00 0.00 5.03
2733 2885 1.730446 GCTTGCTCGAACTTGATTGGC 60.730 52.381 0.00 0.00 0.00 4.52
2735 2887 0.874390 TGCTCGAACTTGATTGGCAC 59.126 50.000 0.00 0.00 0.00 5.01
2746 2898 5.475719 ACTTGATTGGCACTCATTCATTTG 58.524 37.500 8.45 0.00 36.17 2.32
2751 2903 4.459390 TGGCACTCATTCATTTGGATTG 57.541 40.909 0.00 0.00 0.00 2.67
2753 2905 3.196254 GGCACTCATTCATTTGGATTGGT 59.804 43.478 0.00 0.00 0.00 3.67
2754 2906 4.402155 GGCACTCATTCATTTGGATTGGTA 59.598 41.667 0.00 0.00 0.00 3.25
2755 2907 5.450965 GGCACTCATTCATTTGGATTGGTAG 60.451 44.000 0.00 0.00 0.00 3.18
2756 2908 5.126061 GCACTCATTCATTTGGATTGGTAGT 59.874 40.000 0.00 0.00 0.00 2.73
2757 2909 6.678900 GCACTCATTCATTTGGATTGGTAGTC 60.679 42.308 0.00 0.00 0.00 2.59
2759 2911 7.067859 CACTCATTCATTTGGATTGGTAGTCAT 59.932 37.037 0.00 0.00 0.00 3.06
2761 2913 7.999679 TCATTCATTTGGATTGGTAGTCATTC 58.000 34.615 0.00 0.00 0.00 2.67
2762 2914 7.614974 TCATTCATTTGGATTGGTAGTCATTCA 59.385 33.333 0.00 0.00 0.00 2.57
2764 2916 7.572523 TCATTTGGATTGGTAGTCATTCATC 57.427 36.000 0.00 0.00 0.00 2.92
2767 2919 8.472413 CATTTGGATTGGTAGTCATTCATCTTT 58.528 33.333 0.00 0.00 0.00 2.52
2768 2920 9.699410 ATTTGGATTGGTAGTCATTCATCTTTA 57.301 29.630 0.00 0.00 0.00 1.85
2771 2923 9.778741 TGGATTGGTAGTCATTCATCTTTATAC 57.221 33.333 0.00 0.00 0.00 1.47
2789 3212 7.665559 TCTTTATACTGTGCATTTGGAGAAGTT 59.334 33.333 0.00 0.00 0.00 2.66
2791 3214 4.311816 ACTGTGCATTTGGAGAAGTTTG 57.688 40.909 0.00 0.00 0.00 2.93
2795 3218 4.022068 TGTGCATTTGGAGAAGTTTGATCC 60.022 41.667 0.00 0.00 0.00 3.36
2803 3226 4.195416 GGAGAAGTTTGATCCCATCTGTC 58.805 47.826 0.00 0.00 0.00 3.51
2807 3230 5.884792 AGAAGTTTGATCCCATCTGTCAATC 59.115 40.000 0.00 0.00 32.48 2.67
2809 3232 5.191426 AGTTTGATCCCATCTGTCAATCTG 58.809 41.667 0.00 0.00 33.19 2.90
2845 3269 1.697432 TCAGAGGGTAGTTTGTGGGTG 59.303 52.381 0.00 0.00 0.00 4.61
2851 3275 1.607148 GGTAGTTTGTGGGTGAACTGC 59.393 52.381 0.00 0.00 36.79 4.40
2862 3286 1.338200 GGTGAACTGCTGAGTAGGGTG 60.338 57.143 1.95 0.00 0.00 4.61
2881 3306 9.204570 GTAGGGTGTATTTGTCATGTACATATC 57.795 37.037 8.32 5.35 38.10 1.63
2883 3308 6.995686 GGGTGTATTTGTCATGTACATATCCA 59.004 38.462 8.32 2.71 38.10 3.41
2914 3339 8.682936 ATATTAAGCTGTAGTCCCTGAATTTG 57.317 34.615 0.00 0.00 0.00 2.32
2953 3378 0.466124 GTCCCCAGTGAGAGCCATAC 59.534 60.000 0.00 0.00 0.00 2.39
3030 3455 5.182760 AGCCTTGCACTTCTAATTTTCTCAG 59.817 40.000 0.00 0.00 0.00 3.35
3032 3457 6.606768 CCTTGCACTTCTAATTTTCTCAGTC 58.393 40.000 0.00 0.00 0.00 3.51
3064 3489 4.787598 CAAGCATTCACGGATTATTAGGC 58.212 43.478 0.00 0.00 0.00 3.93
3132 3557 8.932945 ATACAATGCAGTTACCATATCTATCG 57.067 34.615 0.00 0.00 0.00 2.92
3146 3571 6.536582 CCATATCTATCGATCAACCAACCATC 59.463 42.308 0.00 0.00 0.00 3.51
3147 3572 4.336889 TCTATCGATCAACCAACCATCC 57.663 45.455 0.00 0.00 0.00 3.51
3305 3732 2.943345 GACGGCACTGAAGCACACG 61.943 63.158 0.00 0.00 35.83 4.49
3441 3906 1.134220 GCATTCTATTGGACGGGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
3442 3907 2.682563 GCATTCTATTGGACGGGTGGAA 60.683 50.000 0.00 0.00 0.00 3.53
3443 3908 3.616219 CATTCTATTGGACGGGTGGAAA 58.384 45.455 0.00 0.00 0.00 3.13
3444 3909 2.773993 TCTATTGGACGGGTGGAAAC 57.226 50.000 0.00 0.00 0.00 2.78
3445 3910 2.262637 TCTATTGGACGGGTGGAAACT 58.737 47.619 0.00 0.00 0.00 2.66
3446 3911 2.027561 TCTATTGGACGGGTGGAAACTG 60.028 50.000 0.00 0.00 0.00 3.16
3447 3912 0.893727 ATTGGACGGGTGGAAACTGC 60.894 55.000 0.00 0.00 0.00 4.40
3448 3913 1.990160 TTGGACGGGTGGAAACTGCT 61.990 55.000 0.00 0.00 0.00 4.24
3449 3914 1.228154 GGACGGGTGGAAACTGCTT 60.228 57.895 0.00 0.00 0.00 3.91
3450 3915 1.235281 GGACGGGTGGAAACTGCTTC 61.235 60.000 0.00 0.00 0.00 3.86
3451 3916 0.534203 GACGGGTGGAAACTGCTTCA 60.534 55.000 0.00 0.00 35.55 3.02
3452 3917 0.106918 ACGGGTGGAAACTGCTTCAA 60.107 50.000 0.00 0.00 35.55 2.69
3453 3918 1.247567 CGGGTGGAAACTGCTTCAAT 58.752 50.000 0.00 0.00 35.55 2.57
3454 3919 1.068333 CGGGTGGAAACTGCTTCAATG 60.068 52.381 0.00 0.00 35.55 2.82
3455 3920 1.337167 GGGTGGAAACTGCTTCAATGC 60.337 52.381 0.00 0.00 35.55 3.56
3622 4092 2.134789 ATCTGGAGAAATGTGTGGCC 57.865 50.000 0.00 0.00 0.00 5.36
3708 4222 2.592623 TATCACAGGCGCGTCAGACG 62.593 60.000 19.10 19.10 45.88 4.18
3713 4227 2.576317 GGCGCGTCAGACGTACTC 60.576 66.667 23.62 10.34 44.73 2.59
3719 4233 0.675837 CGTCAGACGTACTCCCTCCA 60.676 60.000 15.21 0.00 36.74 3.86
3724 4238 3.698040 TCAGACGTACTCCCTCCATTTAC 59.302 47.826 0.00 0.00 0.00 2.01
3764 4278 9.559732 TTTGGATATCTTAGTATGAACCACATG 57.440 33.333 2.05 0.00 39.77 3.21
3879 4393 0.749049 AACGTCTTATACCGCCTCCC 59.251 55.000 0.00 0.00 0.00 4.30
3959 4513 1.473278 GAGACGGAGGGAGTAGTTGTG 59.527 57.143 0.00 0.00 0.00 3.33
3961 4515 1.891150 GACGGAGGGAGTAGTTGTGAA 59.109 52.381 0.00 0.00 0.00 3.18
3962 4516 2.496470 GACGGAGGGAGTAGTTGTGAAT 59.504 50.000 0.00 0.00 0.00 2.57
4004 4558 3.424433 GGACGGCAATCTTTTTAGACGTG 60.424 47.826 0.00 0.00 33.09 4.49
4016 4570 2.563261 TAGACGTGTGGACAGAGACT 57.437 50.000 0.00 0.00 0.00 3.24
4041 4595 0.465097 GATGCATGTGACCTCCTGGG 60.465 60.000 2.46 0.00 41.89 4.45
4070 4624 8.308851 TGGCACAAGGTACTAGTATAACATAA 57.691 34.615 5.75 0.00 38.49 1.90
4071 4625 8.199449 TGGCACAAGGTACTAGTATAACATAAC 58.801 37.037 5.75 0.00 38.49 1.89
4072 4626 8.419442 GGCACAAGGTACTAGTATAACATAACT 58.581 37.037 5.75 0.00 38.49 2.24
4073 4627 9.813446 GCACAAGGTACTAGTATAACATAACTT 57.187 33.333 5.75 0.00 38.49 2.66
4156 5095 4.706842 AACTGACCATGGTTAGACTGTT 57.293 40.909 36.01 25.34 35.61 3.16
4207 5146 4.164030 TGTGTCATGCTATTGGTGTCCTAT 59.836 41.667 0.00 0.00 0.00 2.57
4208 5147 4.752101 GTGTCATGCTATTGGTGTCCTATC 59.248 45.833 0.00 0.00 0.00 2.08
4209 5148 4.202357 TGTCATGCTATTGGTGTCCTATCC 60.202 45.833 0.00 0.00 0.00 2.59
4210 5149 4.040952 GTCATGCTATTGGTGTCCTATCCT 59.959 45.833 0.00 0.00 0.00 3.24
4211 5150 5.246203 GTCATGCTATTGGTGTCCTATCCTA 59.754 44.000 0.00 0.00 0.00 2.94
4212 5151 5.481824 TCATGCTATTGGTGTCCTATCCTAG 59.518 44.000 0.00 0.00 0.00 3.02
4254 5197 6.323266 AGTAACGTATCATCGGCTATCAATC 58.677 40.000 0.00 0.00 34.94 2.67
4264 5207 1.261619 GGCTATCAATCTTTCGTGCCG 59.738 52.381 0.00 0.00 0.00 5.69
4266 5209 1.933181 CTATCAATCTTTCGTGCCGCA 59.067 47.619 0.00 0.00 0.00 5.69
4280 5223 1.007336 GCCGCATACGTTCGGGATAG 61.007 60.000 20.02 1.34 45.37 2.08
4281 5224 0.594602 CCGCATACGTTCGGGATAGA 59.405 55.000 13.56 0.00 41.82 1.98
4295 5238 4.592778 TCGGGATAGAATGTGATTGATCCA 59.407 41.667 0.00 0.00 34.94 3.41
4317 5260 5.711976 CCAAAGGGTGAGTTTCAACATAGAT 59.288 40.000 0.00 0.00 35.30 1.98
4318 5261 6.884295 CCAAAGGGTGAGTTTCAACATAGATA 59.116 38.462 0.00 0.00 35.30 1.98
4323 5266 7.047891 GGGTGAGTTTCAACATAGATATGTCA 58.952 38.462 5.97 0.00 45.55 3.58
4377 5478 4.117685 GAGCGACTATTATTTTGGGACGT 58.882 43.478 0.00 0.00 0.00 4.34
4378 5479 5.266733 AGCGACTATTATTTTGGGACGTA 57.733 39.130 0.00 0.00 0.00 3.57
4379 5480 5.045872 AGCGACTATTATTTTGGGACGTAC 58.954 41.667 0.00 0.00 0.00 3.67
4380 5481 5.045872 GCGACTATTATTTTGGGACGTACT 58.954 41.667 0.00 0.00 0.00 2.73
4386 5487 3.900966 ATTTTGGGACGTACTAGGGAC 57.099 47.619 0.00 0.00 0.00 4.46
4428 5529 4.059459 GCAGCGTGTGACGAACGG 62.059 66.667 0.00 0.00 46.05 4.44
4462 5580 4.868067 AGTTTAATCACGTCACGAGAAGT 58.132 39.130 2.91 0.00 36.91 3.01
4475 5596 4.098960 TCACGAGAAGTTGTACCCATATCC 59.901 45.833 0.00 0.00 0.00 2.59
4493 5614 6.420604 CCATATCCAAACGAATAAATGTTGCC 59.579 38.462 0.00 0.00 0.00 4.52
4522 5643 0.953960 ATGGACCGGTCGTTGCTTTC 60.954 55.000 27.68 12.04 0.00 2.62
4526 5647 2.033194 CCGGTCGTTGCTTTCCCTC 61.033 63.158 0.00 0.00 0.00 4.30
4530 5651 1.610624 GGTCGTTGCTTTCCCTCATCA 60.611 52.381 0.00 0.00 0.00 3.07
4533 5654 1.881925 CGTTGCTTTCCCTCATCACCA 60.882 52.381 0.00 0.00 0.00 4.17
4536 5657 3.173953 TGCTTTCCCTCATCACCAAAT 57.826 42.857 0.00 0.00 0.00 2.32
4537 5658 3.091545 TGCTTTCCCTCATCACCAAATC 58.908 45.455 0.00 0.00 0.00 2.17
4538 5659 2.098117 GCTTTCCCTCATCACCAAATCG 59.902 50.000 0.00 0.00 0.00 3.34
4539 5660 3.347216 CTTTCCCTCATCACCAAATCGT 58.653 45.455 0.00 0.00 0.00 3.73
4540 5661 2.691409 TCCCTCATCACCAAATCGTC 57.309 50.000 0.00 0.00 0.00 4.20
4541 5662 2.187958 TCCCTCATCACCAAATCGTCT 58.812 47.619 0.00 0.00 0.00 4.18
4542 5663 2.168521 TCCCTCATCACCAAATCGTCTC 59.831 50.000 0.00 0.00 0.00 3.36
4543 5664 2.196749 CCTCATCACCAAATCGTCTCG 58.803 52.381 0.00 0.00 0.00 4.04
4544 5665 2.159240 CCTCATCACCAAATCGTCTCGA 60.159 50.000 0.00 0.00 41.13 4.04
4545 5666 3.511699 CTCATCACCAAATCGTCTCGAA 58.488 45.455 0.00 0.00 39.99 3.71
4546 5667 3.920446 TCATCACCAAATCGTCTCGAAA 58.080 40.909 0.00 0.00 39.99 3.46
4547 5668 4.311606 TCATCACCAAATCGTCTCGAAAA 58.688 39.130 0.00 0.00 39.99 2.29
4548 5669 4.388773 TCATCACCAAATCGTCTCGAAAAG 59.611 41.667 0.00 0.00 39.99 2.27
4549 5670 3.724374 TCACCAAATCGTCTCGAAAAGT 58.276 40.909 0.00 0.00 39.99 2.66
4550 5671 3.739300 TCACCAAATCGTCTCGAAAAGTC 59.261 43.478 0.00 0.00 39.99 3.01
4551 5672 3.741344 CACCAAATCGTCTCGAAAAGTCT 59.259 43.478 0.00 0.00 39.99 3.24
4552 5673 4.211374 CACCAAATCGTCTCGAAAAGTCTT 59.789 41.667 0.00 0.00 39.99 3.01
4553 5674 4.211374 ACCAAATCGTCTCGAAAAGTCTTG 59.789 41.667 0.00 0.00 39.99 3.02
4554 5675 4.144555 CAAATCGTCTCGAAAAGTCTTGC 58.855 43.478 0.00 0.00 39.99 4.01
4555 5676 2.795175 TCGTCTCGAAAAGTCTTGCT 57.205 45.000 0.00 0.00 31.06 3.91
4556 5677 3.909776 TCGTCTCGAAAAGTCTTGCTA 57.090 42.857 0.00 0.00 31.06 3.49
4557 5678 4.436242 TCGTCTCGAAAAGTCTTGCTAT 57.564 40.909 0.00 0.00 31.06 2.97
4558 5679 4.413087 TCGTCTCGAAAAGTCTTGCTATC 58.587 43.478 0.00 0.00 31.06 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.457436 GGGAGTAAGAATTTAATGACTTACCAA 57.543 33.333 20.44 0.00 42.89 3.67
61 62 8.832735 AGGGAGTAAGAATTTAATGACTTACCA 58.167 33.333 20.44 0.00 42.89 3.25
62 63 9.327628 GAGGGAGTAAGAATTTAATGACTTACC 57.672 37.037 20.44 15.36 42.89 2.85
65 66 8.606830 ACAGAGGGAGTAAGAATTTAATGACTT 58.393 33.333 0.00 0.00 0.00 3.01
66 67 8.152023 ACAGAGGGAGTAAGAATTTAATGACT 57.848 34.615 0.00 0.00 0.00 3.41
67 68 9.886132 TTACAGAGGGAGTAAGAATTTAATGAC 57.114 33.333 0.00 0.00 0.00 3.06
130 131 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
131 132 8.909671 CCCGTAAACTAATATAAGAGCGTTTAG 58.090 37.037 0.00 0.00 30.36 1.85
132 133 7.867403 CCCCGTAAACTAATATAAGAGCGTTTA 59.133 37.037 0.00 0.00 0.00 2.01
133 134 6.703165 CCCCGTAAACTAATATAAGAGCGTTT 59.297 38.462 0.00 0.00 0.00 3.60
134 135 6.040842 TCCCCGTAAACTAATATAAGAGCGTT 59.959 38.462 0.00 0.00 0.00 4.84
135 136 5.536161 TCCCCGTAAACTAATATAAGAGCGT 59.464 40.000 0.00 0.00 0.00 5.07
136 137 6.017400 TCCCCGTAAACTAATATAAGAGCG 57.983 41.667 0.00 0.00 0.00 5.03
137 138 7.440198 ACTTCCCCGTAAACTAATATAAGAGC 58.560 38.462 0.00 0.00 0.00 4.09
138 139 9.905171 GTACTTCCCCGTAAACTAATATAAGAG 57.095 37.037 0.00 0.00 0.00 2.85
139 140 8.860088 GGTACTTCCCCGTAAACTAATATAAGA 58.140 37.037 0.00 0.00 0.00 2.10
140 141 8.641541 TGGTACTTCCCCGTAAACTAATATAAG 58.358 37.037 0.00 0.00 34.77 1.73
141 142 8.546083 TGGTACTTCCCCGTAAACTAATATAA 57.454 34.615 0.00 0.00 34.77 0.98
142 143 8.546083 TTGGTACTTCCCCGTAAACTAATATA 57.454 34.615 0.00 0.00 34.77 0.86
143 144 7.436320 TTGGTACTTCCCCGTAAACTAATAT 57.564 36.000 0.00 0.00 34.77 1.28
144 145 6.865834 TTGGTACTTCCCCGTAAACTAATA 57.134 37.500 0.00 0.00 34.77 0.98
145 146 5.760484 TTGGTACTTCCCCGTAAACTAAT 57.240 39.130 0.00 0.00 34.77 1.73
146 147 5.559148 TTTGGTACTTCCCCGTAAACTAA 57.441 39.130 0.00 0.00 34.77 2.24
147 148 5.760484 ATTTGGTACTTCCCCGTAAACTA 57.240 39.130 0.00 0.00 34.77 2.24
148 149 4.645863 ATTTGGTACTTCCCCGTAAACT 57.354 40.909 0.00 0.00 34.77 2.66
149 150 5.939883 ACTTATTTGGTACTTCCCCGTAAAC 59.060 40.000 0.00 0.00 34.77 2.01
150 151 5.939296 CACTTATTTGGTACTTCCCCGTAAA 59.061 40.000 0.00 0.00 34.77 2.01
151 152 5.490159 CACTTATTTGGTACTTCCCCGTAA 58.510 41.667 0.00 0.00 34.77 3.18
152 153 4.623647 GCACTTATTTGGTACTTCCCCGTA 60.624 45.833 0.00 0.00 34.77 4.02
153 154 3.871074 GCACTTATTTGGTACTTCCCCGT 60.871 47.826 0.00 0.00 34.77 5.28
154 155 2.681344 GCACTTATTTGGTACTTCCCCG 59.319 50.000 0.00 0.00 34.77 5.73
155 156 3.964411 AGCACTTATTTGGTACTTCCCC 58.036 45.455 0.00 0.00 34.77 4.81
156 157 6.431852 TGTTAAGCACTTATTTGGTACTTCCC 59.568 38.462 0.00 0.00 34.77 3.97
157 158 7.443259 TGTTAAGCACTTATTTGGTACTTCC 57.557 36.000 0.00 0.00 0.00 3.46
185 186 9.309516 GCAATCATCATGATTTACTTGTCATTT 57.690 29.630 10.38 0.00 44.03 2.32
186 187 8.471609 TGCAATCATCATGATTTACTTGTCATT 58.528 29.630 10.38 0.00 44.03 2.57
187 188 8.002984 TGCAATCATCATGATTTACTTGTCAT 57.997 30.769 10.38 0.00 44.03 3.06
188 189 7.393841 TGCAATCATCATGATTTACTTGTCA 57.606 32.000 10.38 7.19 44.03 3.58
189 190 9.390795 GTATGCAATCATCATGATTTACTTGTC 57.609 33.333 10.38 5.12 44.03 3.18
190 191 8.905850 TGTATGCAATCATCATGATTTACTTGT 58.094 29.630 10.38 0.00 44.03 3.16
191 192 9.738832 TTGTATGCAATCATCATGATTTACTTG 57.261 29.630 10.38 8.39 44.03 3.16
218 219 4.681483 GCGCTAAAATCTCAGCAAGTTTTT 59.319 37.500 0.00 10.75 39.25 1.94
219 220 4.229876 GCGCTAAAATCTCAGCAAGTTTT 58.770 39.130 0.00 0.00 37.66 2.43
220 221 3.253188 TGCGCTAAAATCTCAGCAAGTTT 59.747 39.130 9.73 0.00 37.66 2.66
221 222 2.813754 TGCGCTAAAATCTCAGCAAGTT 59.186 40.909 9.73 0.00 37.66 2.66
222 223 2.426522 TGCGCTAAAATCTCAGCAAGT 58.573 42.857 9.73 0.00 37.66 3.16
223 224 3.064408 TGATGCGCTAAAATCTCAGCAAG 59.936 43.478 9.73 0.00 37.66 4.01
224 225 3.009026 TGATGCGCTAAAATCTCAGCAA 58.991 40.909 9.73 0.00 37.66 3.91
225 226 2.631267 TGATGCGCTAAAATCTCAGCA 58.369 42.857 9.73 0.00 37.66 4.41
226 227 3.680642 TTGATGCGCTAAAATCTCAGC 57.319 42.857 9.73 0.00 0.00 4.26
235 236 9.797556 ACGTCTATTATTATATTGATGCGCTAA 57.202 29.630 9.73 1.37 0.00 3.09
236 237 9.233232 CACGTCTATTATTATATTGATGCGCTA 57.767 33.333 9.73 0.00 0.00 4.26
237 238 7.254117 GCACGTCTATTATTATATTGATGCGCT 60.254 37.037 9.73 0.00 28.54 5.92
238 239 6.841286 GCACGTCTATTATTATATTGATGCGC 59.159 38.462 0.00 0.00 0.00 6.09
239 240 7.894847 TGCACGTCTATTATTATATTGATGCG 58.105 34.615 0.00 0.00 0.00 4.73
240 241 8.873830 ACTGCACGTCTATTATTATATTGATGC 58.126 33.333 0.00 0.00 0.00 3.91
243 244 9.406828 GTGACTGCACGTCTATTATTATATTGA 57.593 33.333 14.60 0.00 43.25 2.57
260 261 3.654414 AGTAGTTAGCTTGTGACTGCAC 58.346 45.455 0.00 0.00 45.35 4.57
261 262 4.765339 TCTAGTAGTTAGCTTGTGACTGCA 59.235 41.667 0.00 0.00 0.00 4.41
262 263 5.312120 TCTAGTAGTTAGCTTGTGACTGC 57.688 43.478 0.00 0.00 0.00 4.40
263 264 7.316640 ACATTCTAGTAGTTAGCTTGTGACTG 58.683 38.462 0.00 0.00 0.00 3.51
264 265 7.469537 ACATTCTAGTAGTTAGCTTGTGACT 57.530 36.000 0.00 0.00 0.00 3.41
265 266 8.436200 CAAACATTCTAGTAGTTAGCTTGTGAC 58.564 37.037 0.00 0.00 29.91 3.67
266 267 8.148351 ACAAACATTCTAGTAGTTAGCTTGTGA 58.852 33.333 0.00 0.00 29.91 3.58
267 268 8.311650 ACAAACATTCTAGTAGTTAGCTTGTG 57.688 34.615 0.00 0.00 29.91 3.33
268 269 9.420551 GTACAAACATTCTAGTAGTTAGCTTGT 57.579 33.333 0.00 6.12 0.00 3.16
269 270 9.640963 AGTACAAACATTCTAGTAGTTAGCTTG 57.359 33.333 0.00 0.81 0.00 4.01
271 272 9.857957 GAAGTACAAACATTCTAGTAGTTAGCT 57.142 33.333 0.00 0.00 32.07 3.32
272 273 9.085250 GGAAGTACAAACATTCTAGTAGTTAGC 57.915 37.037 0.00 0.00 32.07 3.09
273 274 9.583765 GGGAAGTACAAACATTCTAGTAGTTAG 57.416 37.037 0.00 0.00 32.07 2.34
274 275 8.246180 CGGGAAGTACAAACATTCTAGTAGTTA 58.754 37.037 0.00 0.00 32.07 2.24
275 276 7.095270 CGGGAAGTACAAACATTCTAGTAGTT 58.905 38.462 0.00 0.00 33.96 2.24
276 277 6.210185 ACGGGAAGTACAAACATTCTAGTAGT 59.790 38.462 0.00 0.00 0.00 2.73
277 278 6.628185 ACGGGAAGTACAAACATTCTAGTAG 58.372 40.000 0.00 0.00 0.00 2.57
278 279 6.594788 ACGGGAAGTACAAACATTCTAGTA 57.405 37.500 0.00 0.00 0.00 1.82
279 280 5.479124 ACGGGAAGTACAAACATTCTAGT 57.521 39.130 0.00 0.00 0.00 2.57
280 281 6.869913 TGTAACGGGAAGTACAAACATTCTAG 59.130 38.462 0.00 0.00 0.00 2.43
281 282 6.757237 TGTAACGGGAAGTACAAACATTCTA 58.243 36.000 0.00 0.00 0.00 2.10
282 283 5.613329 TGTAACGGGAAGTACAAACATTCT 58.387 37.500 0.00 0.00 0.00 2.40
283 284 5.927954 TGTAACGGGAAGTACAAACATTC 57.072 39.130 0.00 0.00 0.00 2.67
284 285 6.063640 GTTGTAACGGGAAGTACAAACATT 57.936 37.500 0.00 0.00 34.70 2.71
285 286 5.678132 GTTGTAACGGGAAGTACAAACAT 57.322 39.130 0.00 0.00 34.70 2.71
300 301 0.039888 AATTGCCCGTGCGTTGTAAC 60.040 50.000 0.00 0.00 41.78 2.50
301 302 0.039978 CAATTGCCCGTGCGTTGTAA 60.040 50.000 0.00 0.00 41.78 2.41
302 303 1.167155 ACAATTGCCCGTGCGTTGTA 61.167 50.000 10.72 0.00 43.05 2.41
303 304 2.334653 CAATTGCCCGTGCGTTGT 59.665 55.556 0.00 0.00 41.78 3.32
304 305 1.729131 GACAATTGCCCGTGCGTTG 60.729 57.895 5.05 6.33 41.78 4.10
305 306 0.604243 TAGACAATTGCCCGTGCGTT 60.604 50.000 5.05 0.00 41.78 4.84
306 307 1.004320 TAGACAATTGCCCGTGCGT 60.004 52.632 5.05 0.00 41.78 5.24
307 308 1.019278 ACTAGACAATTGCCCGTGCG 61.019 55.000 5.05 0.00 41.78 5.34
308 309 1.165270 AACTAGACAATTGCCCGTGC 58.835 50.000 5.05 0.00 38.26 5.34
309 310 5.236478 CCTAATAACTAGACAATTGCCCGTG 59.764 44.000 5.05 0.00 0.00 4.94
310 311 5.104652 ACCTAATAACTAGACAATTGCCCGT 60.105 40.000 5.05 0.00 0.00 5.28
311 312 5.365619 ACCTAATAACTAGACAATTGCCCG 58.634 41.667 5.05 0.00 0.00 6.13
312 313 8.741603 TTTACCTAATAACTAGACAATTGCCC 57.258 34.615 5.05 0.00 0.00 5.36
313 314 9.609346 TCTTTACCTAATAACTAGACAATTGCC 57.391 33.333 5.05 0.00 0.00 4.52
319 320 9.309516 CGCAAATCTTTACCTAATAACTAGACA 57.690 33.333 0.00 0.00 0.00 3.41
320 321 9.310716 ACGCAAATCTTTACCTAATAACTAGAC 57.689 33.333 0.00 0.00 0.00 2.59
321 322 9.309516 CACGCAAATCTTTACCTAATAACTAGA 57.690 33.333 0.00 0.00 0.00 2.43
322 323 9.095065 ACACGCAAATCTTTACCTAATAACTAG 57.905 33.333 0.00 0.00 0.00 2.57
323 324 9.090692 GACACGCAAATCTTTACCTAATAACTA 57.909 33.333 0.00 0.00 0.00 2.24
324 325 7.065443 GGACACGCAAATCTTTACCTAATAACT 59.935 37.037 0.00 0.00 0.00 2.24
325 326 7.148373 TGGACACGCAAATCTTTACCTAATAAC 60.148 37.037 0.00 0.00 0.00 1.89
326 327 6.879993 TGGACACGCAAATCTTTACCTAATAA 59.120 34.615 0.00 0.00 0.00 1.40
327 328 6.408035 TGGACACGCAAATCTTTACCTAATA 58.592 36.000 0.00 0.00 0.00 0.98
328 329 5.250200 TGGACACGCAAATCTTTACCTAAT 58.750 37.500 0.00 0.00 0.00 1.73
329 330 4.643463 TGGACACGCAAATCTTTACCTAA 58.357 39.130 0.00 0.00 0.00 2.69
330 331 4.020928 TCTGGACACGCAAATCTTTACCTA 60.021 41.667 0.00 0.00 0.00 3.08
331 332 3.074412 CTGGACACGCAAATCTTTACCT 58.926 45.455 0.00 0.00 0.00 3.08
332 333 3.071479 TCTGGACACGCAAATCTTTACC 58.929 45.455 0.00 0.00 0.00 2.85
333 334 3.423123 CGTCTGGACACGCAAATCTTTAC 60.423 47.826 1.63 0.00 31.96 2.01
334 335 2.734606 CGTCTGGACACGCAAATCTTTA 59.265 45.455 1.63 0.00 31.96 1.85
335 336 1.531149 CGTCTGGACACGCAAATCTTT 59.469 47.619 1.63 0.00 31.96 2.52
336 337 1.148310 CGTCTGGACACGCAAATCTT 58.852 50.000 1.63 0.00 31.96 2.40
337 338 2.827604 CGTCTGGACACGCAAATCT 58.172 52.632 1.63 0.00 31.96 2.40
344 345 2.880879 CGGATGCGTCTGGACACG 60.881 66.667 6.88 0.00 42.95 4.49
345 346 3.188786 GCGGATGCGTCTGGACAC 61.189 66.667 16.50 0.00 0.00 3.67
346 347 4.451150 GGCGGATGCGTCTGGACA 62.451 66.667 16.50 0.00 44.10 4.02
347 348 4.451150 TGGCGGATGCGTCTGGAC 62.451 66.667 13.64 6.65 44.10 4.02
348 349 4.147449 CTGGCGGATGCGTCTGGA 62.147 66.667 13.64 0.00 44.10 3.86
351 352 4.166888 ATGCTGGCGGATGCGTCT 62.167 61.111 13.64 0.00 44.10 4.18
352 353 3.945434 CATGCTGGCGGATGCGTC 61.945 66.667 3.50 3.50 44.10 5.19
355 356 3.589881 GACCATGCTGGCGGATGC 61.590 66.667 0.00 0.00 42.67 3.91
356 357 2.124612 TGACCATGCTGGCGGATG 60.125 61.111 0.00 0.34 42.67 3.51
357 358 2.191375 CTGACCATGCTGGCGGAT 59.809 61.111 0.00 0.00 42.67 4.18
358 359 4.100084 CCTGACCATGCTGGCGGA 62.100 66.667 0.00 0.00 42.67 5.54
359 360 3.925630 AACCTGACCATGCTGGCGG 62.926 63.158 2.50 0.00 42.67 6.13
360 361 1.526575 AAAACCTGACCATGCTGGCG 61.527 55.000 2.50 0.00 42.67 5.69
361 362 0.681175 AAAAACCTGACCATGCTGGC 59.319 50.000 2.50 0.00 42.67 4.85
362 363 4.806640 AATAAAAACCTGACCATGCTGG 57.193 40.909 1.16 1.16 45.02 4.85
363 364 5.409214 CCAAAATAAAAACCTGACCATGCTG 59.591 40.000 0.00 0.00 0.00 4.41
364 365 5.550290 CCAAAATAAAAACCTGACCATGCT 58.450 37.500 0.00 0.00 0.00 3.79
365 366 4.154015 GCCAAAATAAAAACCTGACCATGC 59.846 41.667 0.00 0.00 0.00 4.06
366 367 5.303971 TGCCAAAATAAAAACCTGACCATG 58.696 37.500 0.00 0.00 0.00 3.66
367 368 5.559148 TGCCAAAATAAAAACCTGACCAT 57.441 34.783 0.00 0.00 0.00 3.55
368 369 5.359194 TTGCCAAAATAAAAACCTGACCA 57.641 34.783 0.00 0.00 0.00 4.02
369 370 6.685527 TTTTGCCAAAATAAAAACCTGACC 57.314 33.333 0.00 0.00 0.00 4.02
370 371 6.183360 TGCTTTTGCCAAAATAAAAACCTGAC 60.183 34.615 2.58 0.00 46.87 3.51
371 372 5.882557 TGCTTTTGCCAAAATAAAAACCTGA 59.117 32.000 2.58 0.00 46.87 3.86
372 373 6.129053 TGCTTTTGCCAAAATAAAAACCTG 57.871 33.333 2.58 0.00 46.87 4.00
373 374 6.238981 CCATGCTTTTGCCAAAATAAAAACCT 60.239 34.615 2.58 0.00 46.87 3.50
374 375 5.919707 CCATGCTTTTGCCAAAATAAAAACC 59.080 36.000 2.58 0.00 46.87 3.27
375 376 5.401972 GCCATGCTTTTGCCAAAATAAAAAC 59.598 36.000 2.58 0.00 46.87 2.43
376 377 5.508657 GGCCATGCTTTTGCCAAAATAAAAA 60.509 36.000 2.58 0.00 46.87 1.94
377 378 4.022503 GGCCATGCTTTTGCCAAAATAAAA 60.023 37.500 2.58 0.00 46.87 1.52
378 379 3.505293 GGCCATGCTTTTGCCAAAATAAA 59.495 39.130 2.58 0.00 46.87 1.40
379 380 3.080319 GGCCATGCTTTTGCCAAAATAA 58.920 40.909 2.58 0.00 46.87 1.40
380 381 2.709213 GGCCATGCTTTTGCCAAAATA 58.291 42.857 2.58 0.00 46.87 1.40
381 382 1.536940 GGCCATGCTTTTGCCAAAAT 58.463 45.000 2.58 0.00 46.87 1.82
382 383 3.018479 GGCCATGCTTTTGCCAAAA 57.982 47.368 0.00 2.15 46.87 2.44
383 384 4.796314 GGCCATGCTTTTGCCAAA 57.204 50.000 0.00 0.00 46.87 3.28
386 387 2.115734 AACCTGGCCATGCTTTTGCC 62.116 55.000 5.51 3.20 46.87 4.52
388 389 1.515081 CAAACCTGGCCATGCTTTTG 58.485 50.000 5.51 7.80 0.00 2.44
389 390 0.397564 CCAAACCTGGCCATGCTTTT 59.602 50.000 5.51 0.00 35.39 2.27
390 391 1.482748 CCCAAACCTGGCCATGCTTT 61.483 55.000 5.51 4.37 41.99 3.51
391 392 1.914764 CCCAAACCTGGCCATGCTT 60.915 57.895 5.51 0.00 41.99 3.91
392 393 2.284112 CCCAAACCTGGCCATGCT 60.284 61.111 5.51 0.00 41.99 3.79
393 394 2.216331 AACCCAAACCTGGCCATGC 61.216 57.895 5.51 0.00 41.99 4.06
394 395 0.831288 TCAACCCAAACCTGGCCATG 60.831 55.000 5.51 6.06 41.99 3.66
395 396 0.105246 TTCAACCCAAACCTGGCCAT 60.105 50.000 5.51 0.00 41.99 4.40
396 397 0.758685 CTTCAACCCAAACCTGGCCA 60.759 55.000 4.71 4.71 41.99 5.36
397 398 1.471829 CCTTCAACCCAAACCTGGCC 61.472 60.000 0.00 0.00 41.99 5.36
398 399 2.049435 CCTTCAACCCAAACCTGGC 58.951 57.895 0.00 0.00 41.99 4.85
399 400 1.805428 CGCCTTCAACCCAAACCTGG 61.805 60.000 0.00 0.00 43.10 4.45
400 401 1.106944 ACGCCTTCAACCCAAACCTG 61.107 55.000 0.00 0.00 0.00 4.00
401 402 1.106944 CACGCCTTCAACCCAAACCT 61.107 55.000 0.00 0.00 0.00 3.50
402 403 1.362355 CACGCCTTCAACCCAAACC 59.638 57.895 0.00 0.00 0.00 3.27
403 404 1.104577 TCCACGCCTTCAACCCAAAC 61.105 55.000 0.00 0.00 0.00 2.93
404 405 0.178975 ATCCACGCCTTCAACCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
405 406 0.178975 AATCCACGCCTTCAACCCAA 60.179 50.000 0.00 0.00 0.00 4.12
406 407 0.893270 CAATCCACGCCTTCAACCCA 60.893 55.000 0.00 0.00 0.00 4.51
407 408 1.595093 CCAATCCACGCCTTCAACCC 61.595 60.000 0.00 0.00 0.00 4.11
408 409 0.608035 TCCAATCCACGCCTTCAACC 60.608 55.000 0.00 0.00 0.00 3.77
409 410 1.463674 ATCCAATCCACGCCTTCAAC 58.536 50.000 0.00 0.00 0.00 3.18
410 411 2.639065 GTATCCAATCCACGCCTTCAA 58.361 47.619 0.00 0.00 0.00 2.69
411 412 1.134220 GGTATCCAATCCACGCCTTCA 60.134 52.381 0.00 0.00 0.00 3.02
412 413 1.594331 GGTATCCAATCCACGCCTTC 58.406 55.000 0.00 0.00 0.00 3.46
413 414 0.182775 GGGTATCCAATCCACGCCTT 59.817 55.000 0.00 0.00 0.00 4.35
414 415 0.986019 TGGGTATCCAATCCACGCCT 60.986 55.000 0.00 0.00 40.73 5.52
415 416 1.529796 TGGGTATCCAATCCACGCC 59.470 57.895 0.00 0.00 40.73 5.68
420 421 7.419518 CCTATGATACTCATGGGTATCCAATCC 60.420 44.444 33.11 15.60 46.62 3.01
421 422 7.504403 CCTATGATACTCATGGGTATCCAATC 58.496 42.308 33.11 18.04 46.62 2.67
422 423 7.443302 CCTATGATACTCATGGGTATCCAAT 57.557 40.000 33.11 25.16 46.62 3.16
423 424 6.874278 CCTATGATACTCATGGGTATCCAA 57.126 41.667 33.11 23.02 46.62 3.53
431 432 4.991056 CGACAAACCCTATGATACTCATGG 59.009 45.833 0.00 0.00 37.70 3.66
432 433 5.842907 TCGACAAACCCTATGATACTCATG 58.157 41.667 0.00 0.00 37.70 3.07
433 434 6.479972 TTCGACAAACCCTATGATACTCAT 57.520 37.500 0.00 0.00 40.72 2.90
434 435 5.925506 TTCGACAAACCCTATGATACTCA 57.074 39.130 0.00 0.00 0.00 3.41
435 436 6.585389 GTTTCGACAAACCCTATGATACTC 57.415 41.667 0.00 0.00 36.62 2.59
447 448 7.696453 CCATTATGTTGATAGGTTTCGACAAAC 59.304 37.037 0.00 0.00 41.99 2.93
448 449 7.392113 ACCATTATGTTGATAGGTTTCGACAAA 59.608 33.333 0.00 0.00 41.99 2.83
449 450 6.882140 ACCATTATGTTGATAGGTTTCGACAA 59.118 34.615 0.00 0.00 41.99 3.18
450 451 6.411376 ACCATTATGTTGATAGGTTTCGACA 58.589 36.000 0.00 0.00 42.68 4.35
451 452 6.920569 ACCATTATGTTGATAGGTTTCGAC 57.079 37.500 0.00 0.00 0.00 4.20
452 453 7.148154 CCAAACCATTATGTTGATAGGTTTCGA 60.148 37.037 0.00 0.00 44.83 3.71
453 454 6.972328 CCAAACCATTATGTTGATAGGTTTCG 59.028 38.462 0.00 0.00 44.83 3.46
454 455 8.062065 TCCAAACCATTATGTTGATAGGTTTC 57.938 34.615 0.00 0.00 44.83 2.78
455 456 8.429237 TTCCAAACCATTATGTTGATAGGTTT 57.571 30.769 0.00 0.00 46.84 3.27
456 457 7.893302 TCTTCCAAACCATTATGTTGATAGGTT 59.107 33.333 0.00 0.00 40.81 3.50
457 458 7.410174 TCTTCCAAACCATTATGTTGATAGGT 58.590 34.615 0.00 0.00 0.00 3.08
458 459 7.880160 TCTTCCAAACCATTATGTTGATAGG 57.120 36.000 0.00 0.00 0.00 2.57
461 462 9.645128 TGATATCTTCCAAACCATTATGTTGAT 57.355 29.630 3.98 0.00 0.00 2.57
462 463 9.473007 TTGATATCTTCCAAACCATTATGTTGA 57.527 29.630 3.98 0.00 0.00 3.18
463 464 9.740239 CTTGATATCTTCCAAACCATTATGTTG 57.260 33.333 3.98 0.00 0.00 3.33
464 465 8.917088 CCTTGATATCTTCCAAACCATTATGTT 58.083 33.333 3.98 0.00 0.00 2.71
465 466 7.014615 GCCTTGATATCTTCCAAACCATTATGT 59.985 37.037 3.98 0.00 0.00 2.29
466 467 7.373493 GCCTTGATATCTTCCAAACCATTATG 58.627 38.462 3.98 0.00 0.00 1.90
467 468 6.207417 CGCCTTGATATCTTCCAAACCATTAT 59.793 38.462 3.98 0.00 0.00 1.28
468 469 5.530915 CGCCTTGATATCTTCCAAACCATTA 59.469 40.000 3.98 0.00 0.00 1.90
469 470 4.339247 CGCCTTGATATCTTCCAAACCATT 59.661 41.667 3.98 0.00 0.00 3.16
470 471 3.885297 CGCCTTGATATCTTCCAAACCAT 59.115 43.478 3.98 0.00 0.00 3.55
471 472 3.054728 TCGCCTTGATATCTTCCAAACCA 60.055 43.478 3.98 0.00 0.00 3.67
472 473 3.541632 TCGCCTTGATATCTTCCAAACC 58.458 45.455 3.98 0.00 0.00 3.27
477 478 4.321378 GGACTACTCGCCTTGATATCTTCC 60.321 50.000 3.98 0.00 0.00 3.46
484 485 2.766263 TCATTGGACTACTCGCCTTGAT 59.234 45.455 0.00 0.00 0.00 2.57
497 498 2.478879 CGGGCCGTTTTTATCATTGGAC 60.479 50.000 19.97 0.00 0.00 4.02
505 506 0.966875 GGAACCCGGGCCGTTTTTAT 60.967 55.000 26.32 4.30 0.00 1.40
521 522 1.271379 GCTGTTCTAGTTGGGCTGGAA 60.271 52.381 0.00 0.00 41.49 3.53
592 593 1.603802 CGGAATGGGATCGAAACATGG 59.396 52.381 0.00 0.00 0.00 3.66
594 595 2.561569 GACGGAATGGGATCGAAACAT 58.438 47.619 0.00 0.00 0.00 2.71
595 596 1.406341 GGACGGAATGGGATCGAAACA 60.406 52.381 0.00 0.00 0.00 2.83
596 597 1.296727 GGACGGAATGGGATCGAAAC 58.703 55.000 0.00 0.00 0.00 2.78
597 598 0.179468 GGGACGGAATGGGATCGAAA 59.821 55.000 0.00 0.00 0.00 3.46
721 722 4.733725 TAGCTTGGAGGCGGGGGT 62.734 66.667 0.00 0.00 37.29 4.95
857 874 2.125673 CAACCACTAGCCGACGGG 60.126 66.667 17.22 0.98 0.00 5.28
899 916 2.818714 GTCTCTCTCGGCGTCGGA 60.819 66.667 10.62 4.85 36.95 4.55
914 931 1.190643 CTCCTCCTCCTCCTTGTGTC 58.809 60.000 0.00 0.00 0.00 3.67
917 934 0.338120 CTCCTCCTCCTCCTCCTTGT 59.662 60.000 0.00 0.00 0.00 3.16
957 1031 1.671054 GCGGAACAGTAGGCAAGCA 60.671 57.895 0.00 0.00 0.00 3.91
999 1073 9.927081 ATCTGTTTAGAGATGGAAATTACCATT 57.073 29.630 0.00 0.00 40.81 3.16
1011 1085 8.604640 ATGCATCAGTTATCTGTTTAGAGATG 57.395 34.615 0.00 0.00 41.91 2.90
1017 1091 8.334263 TGTTCAATGCATCAGTTATCTGTTTA 57.666 30.769 0.00 0.00 41.91 2.01
1059 1133 5.635280 CACAGTTGTATCACAAGTCGATCTT 59.365 40.000 0.00 0.00 39.57 2.40
1061 1135 4.923871 ACACAGTTGTATCACAAGTCGATC 59.076 41.667 0.00 0.00 39.57 3.69
1067 1141 6.086222 GGCATAAACACAGTTGTATCACAAG 58.914 40.000 0.00 0.00 39.00 3.16
1068 1142 5.048364 GGGCATAAACACAGTTGTATCACAA 60.048 40.000 0.00 0.00 33.55 3.33
1072 1146 3.687698 ACGGGCATAAACACAGTTGTATC 59.312 43.478 0.00 0.00 33.55 2.24
1091 1165 3.319122 TCATGTCCTGTATCATCTCACGG 59.681 47.826 0.00 0.00 0.00 4.94
1092 1166 4.574599 TCATGTCCTGTATCATCTCACG 57.425 45.455 0.00 0.00 0.00 4.35
1130 1238 1.482182 AGTATGCACCGATCTTCAGCA 59.518 47.619 0.00 0.00 39.79 4.41
1132 1240 4.240888 CCATAGTATGCACCGATCTTCAG 58.759 47.826 4.47 0.00 0.00 3.02
1330 1448 7.991084 TTCTACTACTTGCTAAGACAGTGTA 57.009 36.000 0.00 0.00 32.45 2.90
1391 1509 1.560923 CACCTCCAAGAAGCGTATCG 58.439 55.000 0.00 0.00 0.00 2.92
1394 1512 1.980052 CCCACCTCCAAGAAGCGTA 59.020 57.895 0.00 0.00 0.00 4.42
1498 1621 3.316308 GGTAAGCACATTAGCCATCTTGG 59.684 47.826 0.00 0.00 41.55 3.61
1532 1661 1.438710 CTGCAGTTTTTCGACGGCG 60.439 57.895 2.87 2.87 42.52 6.46
1766 1895 1.220749 GGAGCAGGGCACGAACATA 59.779 57.895 0.00 0.00 0.00 2.29
1773 1902 1.132500 AATAGGTAGGAGCAGGGCAC 58.868 55.000 0.00 0.00 0.00 5.01
1827 1956 9.046296 CCATTCTAGTTATACCACAAGAATGTC 57.954 37.037 17.07 0.00 44.35 3.06
1828 1957 7.499232 GCCATTCTAGTTATACCACAAGAATGT 59.501 37.037 17.07 0.00 44.35 2.71
1841 1970 6.576185 CCAAAGCAAATGCCATTCTAGTTAT 58.424 36.000 0.94 0.00 43.38 1.89
1845 1974 3.192466 GCCAAAGCAAATGCCATTCTAG 58.808 45.455 0.94 0.00 43.38 2.43
1891 2028 5.048083 GGTGCTTAGAAATCACATGGTCAAA 60.048 40.000 0.00 0.00 32.69 2.69
2043 2180 9.860393 ATCCTATATCCCTTCATACTAACCTTT 57.140 33.333 0.00 0.00 0.00 3.11
2263 2400 9.869844 CTAAAGTGCTAAACTGCATCATATAAC 57.130 33.333 0.00 0.00 45.23 1.89
2290 2427 7.989741 AGGCGTGAGTTAGTTCTAGTATAACTA 59.010 37.037 13.32 4.48 39.28 2.24
2291 2428 6.827762 AGGCGTGAGTTAGTTCTAGTATAACT 59.172 38.462 13.26 13.26 41.28 2.24
2292 2429 7.025485 AGGCGTGAGTTAGTTCTAGTATAAC 57.975 40.000 0.00 0.00 0.00 1.89
2293 2430 7.636150 AAGGCGTGAGTTAGTTCTAGTATAA 57.364 36.000 0.00 0.00 0.00 0.98
2390 2527 7.052248 ACAATCTATCTTGCACAATCTGATCA 58.948 34.615 0.00 0.00 0.00 2.92
2418 2555 7.193595 GCTGTGTTGTTTAAGTTACTGATTGT 58.806 34.615 0.00 0.00 0.00 2.71
2425 2562 4.904253 TGGGCTGTGTTGTTTAAGTTAC 57.096 40.909 0.00 0.00 0.00 2.50
2444 2581 4.802039 GCTGCATATTTGTGAATCAGTTGG 59.198 41.667 0.00 0.00 0.00 3.77
2450 2587 4.096833 TGTCAGGCTGCATATTTGTGAATC 59.903 41.667 10.34 0.00 0.00 2.52
2485 2635 6.917477 TCAAATTATTGACAAAGACACAGTGC 59.083 34.615 0.00 0.00 40.59 4.40
2531 2681 3.617284 TCTCAGCAAGCAATCATGTCAT 58.383 40.909 0.00 0.00 0.00 3.06
2547 2697 4.686191 AGAAGTAATGATGCCCTCTCAG 57.314 45.455 0.00 0.00 0.00 3.35
2579 2730 9.860898 AAGAACATCATTTATTTTAGTTCAGGC 57.139 29.630 0.00 0.00 37.07 4.85
2592 2743 8.352201 CAGGTTCACAGAAAAGAACATCATTTA 58.648 33.333 7.49 0.00 44.46 1.40
2598 2749 7.823745 AATACAGGTTCACAGAAAAGAACAT 57.176 32.000 7.49 0.00 44.46 2.71
2627 2779 1.613317 ATCATCGACCGCCCTGTTGA 61.613 55.000 0.00 0.00 33.28 3.18
2630 2782 1.402896 ATCATCATCGACCGCCCTGT 61.403 55.000 0.00 0.00 0.00 4.00
2712 2864 1.536766 CCAATCAAGTTCGAGCAAGCA 59.463 47.619 1.01 0.00 0.00 3.91
2715 2867 1.266718 GTGCCAATCAAGTTCGAGCAA 59.733 47.619 1.01 0.00 0.00 3.91
2721 2873 4.771590 TGAATGAGTGCCAATCAAGTTC 57.228 40.909 0.00 0.13 32.10 3.01
2733 2885 6.375174 TGACTACCAATCCAAATGAATGAGTG 59.625 38.462 0.00 0.00 0.00 3.51
2735 2887 7.578310 ATGACTACCAATCCAAATGAATGAG 57.422 36.000 0.00 0.00 0.00 2.90
2751 2903 7.710907 TGCACAGTATAAAGATGAATGACTACC 59.289 37.037 0.00 0.00 0.00 3.18
2753 2905 9.836864 AATGCACAGTATAAAGATGAATGACTA 57.163 29.630 0.00 0.00 0.00 2.59
2754 2906 8.743085 AATGCACAGTATAAAGATGAATGACT 57.257 30.769 0.00 0.00 0.00 3.41
2755 2907 9.229784 CAAATGCACAGTATAAAGATGAATGAC 57.770 33.333 0.00 0.00 0.00 3.06
2756 2908 8.407832 CCAAATGCACAGTATAAAGATGAATGA 58.592 33.333 0.00 0.00 0.00 2.57
2757 2909 8.407832 TCCAAATGCACAGTATAAAGATGAATG 58.592 33.333 0.00 0.00 0.00 2.67
2759 2911 7.828717 TCTCCAAATGCACAGTATAAAGATGAA 59.171 33.333 0.00 0.00 0.00 2.57
2761 2913 7.558161 TCTCCAAATGCACAGTATAAAGATG 57.442 36.000 0.00 0.00 0.00 2.90
2762 2914 7.831193 ACTTCTCCAAATGCACAGTATAAAGAT 59.169 33.333 0.00 0.00 0.00 2.40
2764 2916 7.383102 ACTTCTCCAAATGCACAGTATAAAG 57.617 36.000 0.00 0.00 0.00 1.85
2767 2919 6.939730 TCAAACTTCTCCAAATGCACAGTATA 59.060 34.615 0.00 0.00 0.00 1.47
2768 2920 5.769662 TCAAACTTCTCCAAATGCACAGTAT 59.230 36.000 0.00 0.00 0.00 2.12
2770 2922 3.953612 TCAAACTTCTCCAAATGCACAGT 59.046 39.130 0.00 0.00 0.00 3.55
2771 2923 4.572985 TCAAACTTCTCCAAATGCACAG 57.427 40.909 0.00 0.00 0.00 3.66
2772 2924 4.022068 GGATCAAACTTCTCCAAATGCACA 60.022 41.667 0.00 0.00 0.00 4.57
2789 3212 4.849813 ACAGATTGACAGATGGGATCAA 57.150 40.909 0.00 0.00 36.81 2.57
2791 3214 4.133078 GGAACAGATTGACAGATGGGATC 58.867 47.826 0.00 0.00 0.00 3.36
2795 3218 3.947868 ACAGGAACAGATTGACAGATGG 58.052 45.455 0.00 0.00 0.00 3.51
2803 3226 9.219603 TCTGATAAAGTAAACAGGAACAGATTG 57.780 33.333 0.00 0.00 0.00 2.67
2807 3230 6.595716 CCCTCTGATAAAGTAAACAGGAACAG 59.404 42.308 0.00 0.00 0.00 3.16
2809 3232 6.473758 ACCCTCTGATAAAGTAAACAGGAAC 58.526 40.000 0.00 0.00 0.00 3.62
2845 3269 4.473477 AATACACCCTACTCAGCAGTTC 57.527 45.455 0.00 0.00 33.62 3.01
2851 3275 5.734720 ACATGACAAATACACCCTACTCAG 58.265 41.667 0.00 0.00 0.00 3.35
2881 3306 8.211629 AGGGACTACAGCTTAATATAAAACTGG 58.788 37.037 0.00 0.00 36.02 4.00
2883 3308 8.989131 TCAGGGACTACAGCTTAATATAAAACT 58.011 33.333 0.00 0.00 36.02 2.66
3030 3455 1.129437 GAATGCTTGCAGGAAGTCGAC 59.871 52.381 7.70 7.70 33.73 4.20
3032 3457 1.135859 GTGAATGCTTGCAGGAAGTCG 60.136 52.381 0.00 0.00 33.73 4.18
3083 3508 8.735692 ATTTGTTTCACATCTGACCAAAATTT 57.264 26.923 0.00 0.00 33.97 1.82
3108 3533 8.117813 TCGATAGATATGGTAACTGCATTGTA 57.882 34.615 0.00 0.00 42.67 2.41
3132 3557 4.931002 CACAAAATGGATGGTTGGTTGATC 59.069 41.667 0.00 0.00 0.00 2.92
3203 3630 3.488423 CTCTCACCAAGGGCAGGT 58.512 61.111 0.00 0.00 40.85 4.00
3287 3714 2.939022 GTGTGCTTCAGTGCCGTC 59.061 61.111 0.00 0.00 0.00 4.79
3346 3773 0.895100 AATGCTGTGTGGCCACGAAT 60.895 50.000 30.07 13.90 44.92 3.34
3347 3774 1.528076 AATGCTGTGTGGCCACGAA 60.528 52.632 30.07 19.55 44.92 3.85
3445 3910 3.708890 CACAAAGTTCTGCATTGAAGCA 58.291 40.909 4.06 0.00 43.35 3.91
3446 3911 2.473984 GCACAAAGTTCTGCATTGAAGC 59.526 45.455 4.06 4.27 33.31 3.86
3447 3912 3.734231 CAGCACAAAGTTCTGCATTGAAG 59.266 43.478 4.06 0.00 35.73 3.02
3448 3913 3.491276 CCAGCACAAAGTTCTGCATTGAA 60.491 43.478 4.06 0.00 35.73 2.69
3449 3914 2.034939 CCAGCACAAAGTTCTGCATTGA 59.965 45.455 4.06 0.00 35.73 2.57
3450 3915 2.400399 CCAGCACAAAGTTCTGCATTG 58.600 47.619 7.92 0.00 35.73 2.82
3451 3916 1.269936 GCCAGCACAAAGTTCTGCATT 60.270 47.619 7.92 0.00 35.73 3.56
3452 3917 0.316204 GCCAGCACAAAGTTCTGCAT 59.684 50.000 7.92 0.00 35.73 3.96
3453 3918 0.752743 AGCCAGCACAAAGTTCTGCA 60.753 50.000 7.92 0.00 35.73 4.41
3454 3919 0.318445 CAGCCAGCACAAAGTTCTGC 60.318 55.000 0.00 0.00 0.00 4.26
3455 3920 0.318445 GCAGCCAGCACAAAGTTCTG 60.318 55.000 0.00 0.00 44.79 3.02
3764 4278 7.543172 TGCTTTTATTCACTCATTTCAATCTGC 59.457 33.333 0.00 0.00 0.00 4.26
3830 4344 7.962964 TTAAATCAGATGTATCGGATGTTCC 57.037 36.000 8.00 0.00 40.10 3.62
3872 4386 1.348064 TATATTGTGGGAGGGAGGCG 58.652 55.000 0.00 0.00 0.00 5.52
3929 4443 4.960469 ACTCCCTCCGTCTCATAATGTAAA 59.040 41.667 0.00 0.00 0.00 2.01
3933 4447 4.145807 ACTACTCCCTCCGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
3959 4513 7.818446 GTCCTTAAATAATACTCCCTCCGATTC 59.182 40.741 0.00 0.00 0.00 2.52
3961 4515 6.071503 CGTCCTTAAATAATACTCCCTCCGAT 60.072 42.308 0.00 0.00 0.00 4.18
3962 4516 5.242393 CGTCCTTAAATAATACTCCCTCCGA 59.758 44.000 0.00 0.00 0.00 4.55
4004 4558 4.937620 TGCATCAAATAAGTCTCTGTCCAC 59.062 41.667 0.00 0.00 0.00 4.02
4016 4570 4.641541 CAGGAGGTCACATGCATCAAATAA 59.358 41.667 0.00 0.00 0.00 1.40
4041 4595 1.900486 ACTAGTACCTTGTGCCAGGAC 59.100 52.381 0.00 0.00 37.39 3.85
4042 4596 2.320681 ACTAGTACCTTGTGCCAGGA 57.679 50.000 0.00 0.00 37.39 3.86
4043 4597 5.128171 TGTTATACTAGTACCTTGTGCCAGG 59.872 44.000 4.31 0.00 40.23 4.45
4044 4598 6.216801 TGTTATACTAGTACCTTGTGCCAG 57.783 41.667 4.31 0.00 0.00 4.85
4045 4599 6.801718 ATGTTATACTAGTACCTTGTGCCA 57.198 37.500 4.31 0.00 0.00 4.92
4046 4600 8.419442 AGTTATGTTATACTAGTACCTTGTGCC 58.581 37.037 4.31 0.00 0.00 5.01
4047 4601 9.813446 AAGTTATGTTATACTAGTACCTTGTGC 57.187 33.333 4.31 0.00 0.00 4.57
4141 5080 7.125792 AGATTACCTAACAGTCTAACCATGG 57.874 40.000 11.19 11.19 0.00 3.66
4241 5184 2.802816 GCACGAAAGATTGATAGCCGAT 59.197 45.455 0.00 0.00 0.00 4.18
4264 5207 3.428870 CACATTCTATCCCGAACGTATGC 59.571 47.826 0.00 0.00 0.00 3.14
4266 5209 5.723672 ATCACATTCTATCCCGAACGTAT 57.276 39.130 0.00 0.00 0.00 3.06
4280 5223 4.706476 TCACCCTTTGGATCAATCACATTC 59.294 41.667 0.00 0.00 34.81 2.67
4281 5224 4.676109 TCACCCTTTGGATCAATCACATT 58.324 39.130 0.00 0.00 34.81 2.71
4295 5238 8.109634 ACATATCTATGTTGAAACTCACCCTTT 58.890 33.333 0.00 0.00 43.99 3.11
4317 5260 9.671279 ACATCTGTAATCTGTTTGATTGACATA 57.329 29.630 0.00 0.00 44.40 2.29
4318 5261 8.571461 ACATCTGTAATCTGTTTGATTGACAT 57.429 30.769 0.00 0.00 44.40 3.06
4338 5439 2.555199 GCTCCGTTTGCAGATACATCT 58.445 47.619 0.00 0.00 37.72 2.90
4377 5478 6.779049 TCAAACTTGAACACTAGTCCCTAGTA 59.221 38.462 3.74 0.00 38.47 1.82
4378 5479 5.601313 TCAAACTTGAACACTAGTCCCTAGT 59.399 40.000 0.00 0.00 39.81 2.57
4379 5480 6.097915 TCAAACTTGAACACTAGTCCCTAG 57.902 41.667 0.00 0.00 35.87 3.02
4380 5481 6.269077 TGATCAAACTTGAACACTAGTCCCTA 59.731 38.462 0.00 0.00 41.13 3.53
4386 5487 5.634896 GGCATGATCAAACTTGAACACTAG 58.365 41.667 0.00 0.00 41.72 2.57
4391 5492 2.867429 CCGGCATGATCAAACTTGAAC 58.133 47.619 0.00 0.00 41.13 3.18
4401 5502 3.945434 CACGCTGCCGGCATGATC 61.945 66.667 32.87 17.90 36.05 2.92
4428 5529 4.433805 CGTGATTAAACTAACAGCGGTGAC 60.434 45.833 23.44 3.05 0.00 3.67
4432 5533 3.676172 TGACGTGATTAAACTAACAGCGG 59.324 43.478 0.00 0.00 0.00 5.52
4433 5534 4.625135 GTGACGTGATTAAACTAACAGCG 58.375 43.478 0.00 0.00 0.00 5.18
4434 5535 4.383649 TCGTGACGTGATTAAACTAACAGC 59.616 41.667 4.40 0.00 0.00 4.40
4435 5536 5.854866 TCTCGTGACGTGATTAAACTAACAG 59.145 40.000 4.40 0.00 0.00 3.16
4462 5580 8.625651 CATTTATTCGTTTGGATATGGGTACAA 58.374 33.333 0.00 0.00 0.00 2.41
4475 5596 4.981674 ACACAGGCAACATTTATTCGTTTG 59.018 37.500 0.00 0.00 41.41 2.93
4493 5614 0.250295 ACCGGTCCATGTCAACACAG 60.250 55.000 0.00 0.00 35.41 3.66
4522 5643 2.555199 GAGACGATTTGGTGATGAGGG 58.445 52.381 0.00 0.00 0.00 4.30
4526 5647 4.152402 ACTTTTCGAGACGATTTGGTGATG 59.848 41.667 0.00 0.00 35.23 3.07
4530 5651 3.991367 AGACTTTTCGAGACGATTTGGT 58.009 40.909 0.00 0.00 35.23 3.67
4533 5654 4.058817 AGCAAGACTTTTCGAGACGATTT 58.941 39.130 0.00 0.00 35.23 2.17
4536 5657 2.795175 AGCAAGACTTTTCGAGACGA 57.205 45.000 0.00 0.00 0.00 4.20
4537 5658 4.746836 GATAGCAAGACTTTTCGAGACG 57.253 45.455 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.