Multiple sequence alignment - TraesCS7A01G455400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G455400 chr7A 100.000 4271 0 0 1 4271 651713385 651709115 0.000000e+00 7888.0
1 TraesCS7A01G455400 chr7A 91.475 305 25 1 3574 3877 80533109 80532805 6.610000e-113 418.0
2 TraesCS7A01G455400 chr7A 93.125 160 11 0 1295 1454 275869648 275869807 7.140000e-58 235.0
3 TraesCS7A01G455400 chr7A 92.248 129 10 0 1457 1585 275869656 275869528 2.620000e-42 183.0
4 TraesCS7A01G455400 chr7A 84.906 159 13 8 1146 1302 275869951 275869802 2.660000e-32 150.0
5 TraesCS7A01G455400 chr7D 89.353 3231 167 80 418 3561 565429069 565425929 0.000000e+00 3897.0
6 TraesCS7A01G455400 chr7D 82.378 1152 122 29 2155 3301 565394423 565393348 0.000000e+00 928.0
7 TraesCS7A01G455400 chr7D 87.819 353 22 8 3913 4246 565425916 565425566 1.110000e-105 394.0
8 TraesCS7A01G455400 chr7D 84.795 342 21 9 3878 4201 565391007 565390679 8.910000e-82 315.0
9 TraesCS7A01G455400 chr7D 84.665 313 21 7 3 315 565440280 565439995 1.940000e-73 287.0
10 TraesCS7A01G455400 chr7B 89.984 3085 185 57 418 3434 615797342 615794314 0.000000e+00 3871.0
11 TraesCS7A01G455400 chr7B 84.911 729 84 17 2158 2884 615787276 615786572 0.000000e+00 713.0
12 TraesCS7A01G455400 chr7B 88.857 350 24 1 3937 4271 615762866 615762517 2.380000e-112 416.0
13 TraesCS7A01G455400 chr7B 89.298 299 32 0 2882 3180 615776728 615776430 4.030000e-100 375.0
14 TraesCS7A01G455400 chr7B 84.457 341 30 5 3 343 615809541 615809224 8.910000e-82 315.0
15 TraesCS7A01G455400 chr7B 85.623 313 18 8 3878 4169 615794228 615793922 1.930000e-78 303.0
16 TraesCS7A01G455400 chr7B 89.571 163 9 2 2793 2947 615735120 615734958 2.600000e-47 200.0
17 TraesCS7A01G455400 chr7B 85.930 199 12 2 3986 4169 615734434 615734237 9.370000e-47 198.0
18 TraesCS7A01G455400 chr7B 78.788 330 29 18 2406 2733 615735416 615735126 2.620000e-42 183.0
19 TraesCS7A01G455400 chr7B 90.909 121 10 1 2999 3118 615734970 615734850 1.230000e-35 161.0
20 TraesCS7A01G455400 chr7B 93.651 63 2 2 3501 3562 615794289 615794228 4.550000e-15 93.5
21 TraesCS7A01G455400 chr1A 91.054 313 27 1 3569 3880 382256232 382255920 5.110000e-114 422.0
22 TraesCS7A01G455400 chr1A 91.205 307 26 1 3572 3877 499198212 499197906 2.380000e-112 416.0
23 TraesCS7A01G455400 chr2A 90.596 319 27 3 3563 3879 18596681 18596998 1.840000e-113 420.0
24 TraesCS7A01G455400 chr2A 90.476 315 27 3 3569 3881 15845383 15845696 3.070000e-111 412.0
25 TraesCS7A01G455400 chr2A 92.994 157 11 0 1298 1454 103517807 103517651 3.320000e-56 230.0
26 TraesCS7A01G455400 chr2A 89.147 129 14 0 1457 1585 103517802 103517930 1.230000e-35 161.0
27 TraesCS7A01G455400 chr6B 91.205 307 26 1 3572 3877 547713955 547713649 2.380000e-112 416.0
28 TraesCS7A01G455400 chr6A 90.282 319 29 2 3565 3881 602675644 602675962 2.380000e-112 416.0
29 TraesCS7A01G455400 chr6A 90.705 312 28 1 3570 3880 410575761 410575450 8.540000e-112 414.0
30 TraesCS7A01G455400 chr5A 90.476 315 29 1 3566 3879 258038585 258038271 8.540000e-112 414.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G455400 chr7A 651709115 651713385 4270 True 7888.0 7888 100.000000 1 4271 1 chr7A.!!$R2 4270
1 TraesCS7A01G455400 chr7D 565425566 565429069 3503 True 2145.5 3897 88.586000 418 4246 2 chr7D.!!$R3 3828
2 TraesCS7A01G455400 chr7D 565390679 565394423 3744 True 621.5 928 83.586500 2155 4201 2 chr7D.!!$R2 2046
3 TraesCS7A01G455400 chr7B 615793922 615797342 3420 True 1422.5 3871 89.752667 418 4169 3 chr7B.!!$R6 3751
4 TraesCS7A01G455400 chr7B 615786572 615787276 704 True 713.0 713 84.911000 2158 2884 1 chr7B.!!$R3 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.032815 GGAAGGAGTATCTCTGCCGC 59.967 60.0 0.00 0.0 34.98 6.53 F
369 370 0.034186 TGTTATTGCTCTGCCTGGGG 60.034 55.0 0.00 0.0 0.00 4.96 F
534 548 0.039074 GCATGCTATACGAGGACGCT 60.039 55.0 11.37 0.0 43.96 5.07 F
1239 1326 0.166814 GCGATGCTTCTTGGTGTGTC 59.833 55.0 0.00 0.0 0.00 3.67 F
2440 2529 0.250640 AGGTGGCAAACTCTCTGCTG 60.251 55.0 0.00 0.0 39.82 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 1294 0.163788 GCATCGCCATTAATCGACCG 59.836 55.000 1.75 0.00 37.55 4.79 R
2236 2323 0.306533 GCGTTGTTCGGCTTCTTGAA 59.693 50.000 0.00 0.00 40.26 2.69 R
2440 2529 0.388649 ACGTTGCACGATGTCCTCTC 60.389 55.000 14.18 0.00 46.05 3.20 R
2468 2561 1.067635 GCTGCAAAAATGGACGGACAT 60.068 47.619 0.00 0.00 0.00 3.06 R
4199 6496 0.249676 AGACAGTGGAGAGCATGCAG 59.750 55.000 21.98 1.43 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.388499 TCCCGCTGGAAAGACCGC 62.388 66.667 0.00 0.00 42.61 5.68
28 29 3.423154 CTGGAAAGACCGCGCCAC 61.423 66.667 0.00 0.00 42.61 5.01
31 32 3.723348 GAAAGACCGCGCCACCAC 61.723 66.667 0.00 0.00 0.00 4.16
32 33 4.555709 AAAGACCGCGCCACCACA 62.556 61.111 0.00 0.00 0.00 4.17
33 34 3.842925 AAAGACCGCGCCACCACAT 62.843 57.895 0.00 0.00 0.00 3.21
42 43 4.343323 CCACCACATGCGTCCCCA 62.343 66.667 0.00 0.00 0.00 4.96
43 44 2.747460 CACCACATGCGTCCCCAG 60.747 66.667 0.00 0.00 0.00 4.45
44 45 4.033776 ACCACATGCGTCCCCAGG 62.034 66.667 0.00 0.00 0.00 4.45
45 46 4.033776 CCACATGCGTCCCCAGGT 62.034 66.667 0.00 0.00 0.00 4.00
46 47 2.034066 CACATGCGTCCCCAGGTT 59.966 61.111 0.00 0.00 0.00 3.50
47 48 1.298340 CACATGCGTCCCCAGGTTA 59.702 57.895 0.00 0.00 0.00 2.85
48 49 0.322098 CACATGCGTCCCCAGGTTAA 60.322 55.000 0.00 0.00 0.00 2.01
49 50 0.402504 ACATGCGTCCCCAGGTTAAA 59.597 50.000 0.00 0.00 0.00 1.52
50 51 1.202952 ACATGCGTCCCCAGGTTAAAA 60.203 47.619 0.00 0.00 0.00 1.52
51 52 2.099405 CATGCGTCCCCAGGTTAAAAT 58.901 47.619 0.00 0.00 0.00 1.82
52 53 3.283751 CATGCGTCCCCAGGTTAAAATA 58.716 45.455 0.00 0.00 0.00 1.40
53 54 2.713877 TGCGTCCCCAGGTTAAAATAC 58.286 47.619 0.00 0.00 0.00 1.89
54 55 2.306512 TGCGTCCCCAGGTTAAAATACT 59.693 45.455 0.00 0.00 0.00 2.12
55 56 2.941064 GCGTCCCCAGGTTAAAATACTC 59.059 50.000 0.00 0.00 0.00 2.59
56 57 3.370209 GCGTCCCCAGGTTAAAATACTCT 60.370 47.826 0.00 0.00 0.00 3.24
57 58 4.439968 CGTCCCCAGGTTAAAATACTCTC 58.560 47.826 0.00 0.00 0.00 3.20
58 59 4.682589 CGTCCCCAGGTTAAAATACTCTCC 60.683 50.000 0.00 0.00 0.00 3.71
59 60 4.473922 GTCCCCAGGTTAAAATACTCTCCT 59.526 45.833 0.00 0.00 0.00 3.69
60 61 5.045066 GTCCCCAGGTTAAAATACTCTCCTT 60.045 44.000 0.00 0.00 0.00 3.36
61 62 5.191124 TCCCCAGGTTAAAATACTCTCCTTC 59.809 44.000 0.00 0.00 0.00 3.46
62 63 5.437946 CCCAGGTTAAAATACTCTCCTTCC 58.562 45.833 0.00 0.00 0.00 3.46
63 64 5.116882 CCAGGTTAAAATACTCTCCTTCCG 58.883 45.833 0.00 0.00 0.00 4.30
64 65 5.116882 CAGGTTAAAATACTCTCCTTCCGG 58.883 45.833 0.00 0.00 0.00 5.14
65 66 4.781621 AGGTTAAAATACTCTCCTTCCGGT 59.218 41.667 0.00 0.00 0.00 5.28
66 67 5.960202 AGGTTAAAATACTCTCCTTCCGGTA 59.040 40.000 0.00 0.00 0.00 4.02
67 68 6.441604 AGGTTAAAATACTCTCCTTCCGGTAA 59.558 38.462 0.00 0.00 0.00 2.85
68 69 7.038088 AGGTTAAAATACTCTCCTTCCGGTAAA 60.038 37.037 0.00 0.00 0.00 2.01
69 70 7.772292 GGTTAAAATACTCTCCTTCCGGTAAAT 59.228 37.037 0.00 0.00 0.00 1.40
70 71 8.610035 GTTAAAATACTCTCCTTCCGGTAAATG 58.390 37.037 0.00 0.00 0.00 2.32
71 72 5.952347 AATACTCTCCTTCCGGTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
72 73 5.952347 ATACTCTCCTTCCGGTAAATGTT 57.048 39.130 0.00 0.00 0.00 2.71
73 74 4.635699 ACTCTCCTTCCGGTAAATGTTT 57.364 40.909 0.00 0.00 0.00 2.83
74 75 4.576879 ACTCTCCTTCCGGTAAATGTTTC 58.423 43.478 0.00 0.00 0.00 2.78
75 76 3.939592 CTCTCCTTCCGGTAAATGTTTCC 59.060 47.826 0.00 0.00 0.00 3.13
76 77 2.676342 CTCCTTCCGGTAAATGTTTCCG 59.324 50.000 0.00 0.00 43.30 4.30
80 81 3.687340 CGGTAAATGTTTCCGGTGC 57.313 52.632 0.00 0.00 40.49 5.01
81 82 0.179210 CGGTAAATGTTTCCGGTGCG 60.179 55.000 0.00 0.00 40.49 5.34
111 112 2.853963 CGTAGTGCGTATGTACACACA 58.146 47.619 14.58 1.83 40.63 3.72
112 113 2.591148 CGTAGTGCGTATGTACACACAC 59.409 50.000 14.58 12.24 40.63 3.82
113 114 2.074547 AGTGCGTATGTACACACACC 57.925 50.000 14.58 1.87 40.63 4.16
114 115 1.616865 AGTGCGTATGTACACACACCT 59.383 47.619 14.58 0.41 40.63 4.00
115 116 1.990563 GTGCGTATGTACACACACCTC 59.009 52.381 4.95 0.00 38.67 3.85
116 117 1.890489 TGCGTATGTACACACACCTCT 59.110 47.619 4.95 0.00 37.54 3.69
117 118 2.259618 GCGTATGTACACACACCTCTG 58.740 52.381 4.95 0.00 37.54 3.35
118 119 2.259618 CGTATGTACACACACCTCTGC 58.740 52.381 4.95 0.00 37.54 4.26
119 120 2.352323 CGTATGTACACACACCTCTGCA 60.352 50.000 4.95 0.00 37.54 4.41
120 121 3.676049 CGTATGTACACACACCTCTGCAT 60.676 47.826 4.95 0.00 37.54 3.96
121 122 2.455674 TGTACACACACCTCTGCATC 57.544 50.000 0.00 0.00 0.00 3.91
122 123 1.970640 TGTACACACACCTCTGCATCT 59.029 47.619 0.00 0.00 0.00 2.90
123 124 2.289010 TGTACACACACCTCTGCATCTG 60.289 50.000 0.00 0.00 0.00 2.90
124 125 0.604780 ACACACACCTCTGCATCTGC 60.605 55.000 0.00 0.00 42.50 4.26
125 126 1.375140 ACACACCTCTGCATCTGCG 60.375 57.895 0.00 0.00 45.83 5.18
126 127 1.375140 CACACCTCTGCATCTGCGT 60.375 57.895 0.00 0.00 45.83 5.24
127 128 1.375140 ACACCTCTGCATCTGCGTG 60.375 57.895 6.44 6.44 45.83 5.34
128 129 2.435586 ACCTCTGCATCTGCGTGC 60.436 61.111 0.00 2.00 45.83 5.34
134 135 4.388080 GCATCTGCGTGCGTGCAA 62.388 61.111 4.16 0.00 45.74 4.08
135 136 2.202260 CATCTGCGTGCGTGCAAG 60.202 61.111 3.32 3.32 45.74 4.01
136 137 2.666190 ATCTGCGTGCGTGCAAGT 60.666 55.556 9.41 0.00 45.74 3.16
137 138 2.958204 ATCTGCGTGCGTGCAAGTG 61.958 57.895 9.41 3.70 45.74 3.16
138 139 4.671549 CTGCGTGCGTGCAAGTGG 62.672 66.667 9.41 0.00 45.74 4.00
162 163 2.740826 CGCCGGCTTCGAGGAAAA 60.741 61.111 26.68 0.00 35.61 2.29
163 164 2.740714 CGCCGGCTTCGAGGAAAAG 61.741 63.158 26.68 0.00 35.61 2.27
164 165 2.399356 GCCGGCTTCGAGGAAAAGG 61.399 63.158 22.15 0.00 35.61 3.11
165 166 1.003718 CCGGCTTCGAGGAAAAGGT 60.004 57.895 0.00 0.00 35.61 3.50
166 167 1.298859 CCGGCTTCGAGGAAAAGGTG 61.299 60.000 0.00 0.00 35.61 4.00
167 168 0.320421 CGGCTTCGAGGAAAAGGTGA 60.320 55.000 0.00 0.00 35.61 4.02
168 169 1.443802 GGCTTCGAGGAAAAGGTGAG 58.556 55.000 0.00 0.00 0.00 3.51
169 170 1.443802 GCTTCGAGGAAAAGGTGAGG 58.556 55.000 0.00 0.00 0.00 3.86
170 171 1.443802 CTTCGAGGAAAAGGTGAGGC 58.556 55.000 0.00 0.00 0.00 4.70
171 172 0.320421 TTCGAGGAAAAGGTGAGGCG 60.320 55.000 0.00 0.00 0.00 5.52
172 173 1.183030 TCGAGGAAAAGGTGAGGCGA 61.183 55.000 0.00 0.00 0.00 5.54
173 174 0.108138 CGAGGAAAAGGTGAGGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
174 175 1.373570 GAGGAAAAGGTGAGGCGATG 58.626 55.000 0.00 0.00 0.00 3.84
175 176 0.678048 AGGAAAAGGTGAGGCGATGC 60.678 55.000 0.00 0.00 0.00 3.91
190 191 4.978863 TGCCGCAGCACTACGCAA 62.979 61.111 0.00 0.00 46.52 4.85
191 192 4.152625 GCCGCAGCACTACGCAAG 62.153 66.667 0.00 0.00 46.13 4.01
192 193 3.490759 CCGCAGCACTACGCAAGG 61.491 66.667 0.00 0.00 46.13 3.61
193 194 2.738521 CGCAGCACTACGCAAGGT 60.739 61.111 0.00 0.00 46.13 3.50
194 195 2.863153 GCAGCACTACGCAAGGTG 59.137 61.111 0.00 0.00 46.13 4.00
195 196 2.680913 GCAGCACTACGCAAGGTGG 61.681 63.158 0.00 0.00 46.13 4.61
196 197 2.358737 AGCACTACGCAAGGTGGC 60.359 61.111 0.00 0.00 46.13 5.01
205 206 3.188773 GCAAGGTGGCGGTAAAAAC 57.811 52.632 0.00 0.00 0.00 2.43
206 207 0.671796 GCAAGGTGGCGGTAAAAACT 59.328 50.000 0.00 0.00 0.00 2.66
207 208 1.601914 GCAAGGTGGCGGTAAAAACTG 60.602 52.381 0.00 0.00 0.00 3.16
208 209 1.000717 CAAGGTGGCGGTAAAAACTGG 60.001 52.381 0.00 0.00 0.00 4.00
209 210 0.475044 AGGTGGCGGTAAAAACTGGA 59.525 50.000 0.00 0.00 0.00 3.86
210 211 1.133730 AGGTGGCGGTAAAAACTGGAA 60.134 47.619 0.00 0.00 0.00 3.53
211 212 1.682323 GGTGGCGGTAAAAACTGGAAA 59.318 47.619 0.00 0.00 0.00 3.13
212 213 2.287970 GGTGGCGGTAAAAACTGGAAAG 60.288 50.000 0.00 0.00 0.00 2.62
213 214 2.619646 GTGGCGGTAAAAACTGGAAAGA 59.380 45.455 0.00 0.00 0.00 2.52
214 215 3.067040 GTGGCGGTAAAAACTGGAAAGAA 59.933 43.478 0.00 0.00 0.00 2.52
215 216 3.700038 TGGCGGTAAAAACTGGAAAGAAA 59.300 39.130 0.00 0.00 0.00 2.52
216 217 4.159879 TGGCGGTAAAAACTGGAAAGAAAA 59.840 37.500 0.00 0.00 0.00 2.29
217 218 5.110598 GGCGGTAAAAACTGGAAAGAAAAA 58.889 37.500 0.00 0.00 0.00 1.94
218 219 5.233476 GGCGGTAAAAACTGGAAAGAAAAAG 59.767 40.000 0.00 0.00 0.00 2.27
219 220 6.037726 GCGGTAAAAACTGGAAAGAAAAAGA 58.962 36.000 0.00 0.00 0.00 2.52
220 221 6.198403 GCGGTAAAAACTGGAAAGAAAAAGAG 59.802 38.462 0.00 0.00 0.00 2.85
221 222 6.695713 CGGTAAAAACTGGAAAGAAAAAGAGG 59.304 38.462 0.00 0.00 0.00 3.69
222 223 6.479001 GGTAAAAACTGGAAAGAAAAAGAGGC 59.521 38.462 0.00 0.00 0.00 4.70
223 224 3.990318 AACTGGAAAGAAAAAGAGGCG 57.010 42.857 0.00 0.00 0.00 5.52
224 225 2.932261 ACTGGAAAGAAAAAGAGGCGT 58.068 42.857 0.00 0.00 0.00 5.68
225 226 3.288092 ACTGGAAAGAAAAAGAGGCGTT 58.712 40.909 0.00 0.00 0.00 4.84
226 227 3.066760 ACTGGAAAGAAAAAGAGGCGTTG 59.933 43.478 0.00 0.00 0.00 4.10
227 228 2.223711 TGGAAAGAAAAAGAGGCGTTGC 60.224 45.455 0.00 0.00 0.00 4.17
228 229 2.034685 GGAAAGAAAAAGAGGCGTTGCT 59.965 45.455 0.00 0.00 0.00 3.91
229 230 2.781945 AAGAAAAAGAGGCGTTGCTG 57.218 45.000 0.00 0.00 0.00 4.41
230 231 0.312102 AGAAAAAGAGGCGTTGCTGC 59.688 50.000 0.00 0.00 0.00 5.25
231 232 0.312102 GAAAAAGAGGCGTTGCTGCT 59.688 50.000 0.00 0.00 34.52 4.24
232 233 0.312102 AAAAAGAGGCGTTGCTGCTC 59.688 50.000 0.00 0.00 34.52 4.26
233 234 1.845809 AAAAGAGGCGTTGCTGCTCG 61.846 55.000 0.00 7.30 34.52 5.03
234 235 4.749310 AGAGGCGTTGCTGCTCGG 62.749 66.667 16.13 1.08 34.52 4.63
235 236 4.742201 GAGGCGTTGCTGCTCGGA 62.742 66.667 16.13 0.00 34.52 4.55
236 237 4.087892 AGGCGTTGCTGCTCGGAT 62.088 61.111 16.13 0.00 34.52 4.18
237 238 3.567797 GGCGTTGCTGCTCGGATC 61.568 66.667 16.13 0.00 34.52 3.36
238 239 3.567797 GCGTTGCTGCTCGGATCC 61.568 66.667 0.00 0.00 0.00 3.36
239 240 2.185350 CGTTGCTGCTCGGATCCT 59.815 61.111 10.75 0.00 0.00 3.24
240 241 1.448540 CGTTGCTGCTCGGATCCTT 60.449 57.895 10.75 0.00 0.00 3.36
241 242 1.699656 CGTTGCTGCTCGGATCCTTG 61.700 60.000 10.75 3.26 0.00 3.61
242 243 1.078214 TTGCTGCTCGGATCCTTGG 60.078 57.895 10.75 0.61 0.00 3.61
243 244 2.203126 GCTGCTCGGATCCTTGGG 60.203 66.667 10.75 0.00 0.00 4.12
244 245 2.203126 CTGCTCGGATCCTTGGGC 60.203 66.667 10.75 7.41 0.00 5.36
245 246 3.764160 CTGCTCGGATCCTTGGGCC 62.764 68.421 10.75 0.00 0.00 5.80
246 247 4.570874 GCTCGGATCCTTGGGCCC 62.571 72.222 17.59 17.59 0.00 5.80
247 248 4.241555 CTCGGATCCTTGGGCCCG 62.242 72.222 19.37 2.86 38.98 6.13
251 252 4.883354 GATCCTTGGGCCCGGCAG 62.883 72.222 19.37 12.99 0.00 4.85
265 266 4.575245 GCAGCGCGCGTATCCAAC 62.575 66.667 32.35 12.72 0.00 3.77
266 267 3.185365 CAGCGCGCGTATCCAACA 61.185 61.111 32.35 0.00 0.00 3.33
267 268 3.186047 AGCGCGCGTATCCAACAC 61.186 61.111 32.35 11.09 0.00 3.32
268 269 3.186047 GCGCGCGTATCCAACACT 61.186 61.111 32.35 0.00 0.00 3.55
269 270 2.695055 CGCGCGTATCCAACACTG 59.305 61.111 24.19 0.00 0.00 3.66
270 271 1.803922 CGCGCGTATCCAACACTGA 60.804 57.895 24.19 0.00 0.00 3.41
271 272 1.145759 CGCGCGTATCCAACACTGAT 61.146 55.000 24.19 0.00 0.00 2.90
272 273 1.847818 GCGCGTATCCAACACTGATA 58.152 50.000 8.43 0.00 0.00 2.15
273 274 2.198406 GCGCGTATCCAACACTGATAA 58.802 47.619 8.43 0.00 0.00 1.75
274 275 2.800544 GCGCGTATCCAACACTGATAAT 59.199 45.455 8.43 0.00 0.00 1.28
275 276 3.120991 GCGCGTATCCAACACTGATAATC 60.121 47.826 8.43 0.00 0.00 1.75
276 277 4.048504 CGCGTATCCAACACTGATAATCA 58.951 43.478 0.00 0.00 0.00 2.57
277 278 4.686091 CGCGTATCCAACACTGATAATCAT 59.314 41.667 0.00 0.00 0.00 2.45
278 279 5.388786 CGCGTATCCAACACTGATAATCATG 60.389 44.000 0.00 0.00 0.00 3.07
279 280 5.615544 GCGTATCCAACACTGATAATCATGC 60.616 44.000 0.00 0.00 0.00 4.06
280 281 5.106948 CGTATCCAACACTGATAATCATGCC 60.107 44.000 0.00 0.00 0.00 4.40
281 282 3.554934 TCCAACACTGATAATCATGCCC 58.445 45.455 0.00 0.00 0.00 5.36
282 283 2.291465 CCAACACTGATAATCATGCCCG 59.709 50.000 0.00 0.00 0.00 6.13
283 284 2.260844 ACACTGATAATCATGCCCGG 57.739 50.000 0.00 0.00 0.00 5.73
284 285 1.490490 ACACTGATAATCATGCCCGGT 59.510 47.619 0.00 0.00 0.00 5.28
285 286 1.875514 CACTGATAATCATGCCCGGTG 59.124 52.381 0.00 0.00 0.00 4.94
286 287 1.202806 ACTGATAATCATGCCCGGTGG 60.203 52.381 0.00 0.00 0.00 4.61
298 299 3.225608 CCGGTGGGAAGGAGTATCT 57.774 57.895 0.00 0.00 34.06 1.98
299 300 1.041437 CCGGTGGGAAGGAGTATCTC 58.959 60.000 0.00 0.00 34.06 2.75
300 301 1.411787 CCGGTGGGAAGGAGTATCTCT 60.412 57.143 0.00 0.00 34.06 3.10
301 302 1.683917 CGGTGGGAAGGAGTATCTCTG 59.316 57.143 0.00 0.00 33.73 3.35
302 303 1.414550 GGTGGGAAGGAGTATCTCTGC 59.585 57.143 0.00 0.00 33.73 4.26
303 304 1.414550 GTGGGAAGGAGTATCTCTGCC 59.585 57.143 0.00 0.00 34.98 4.85
304 305 0.676736 GGGAAGGAGTATCTCTGCCG 59.323 60.000 0.00 0.00 33.32 5.69
305 306 0.032815 GGAAGGAGTATCTCTGCCGC 59.967 60.000 0.00 0.00 34.98 6.53
306 307 1.036707 GAAGGAGTATCTCTGCCGCT 58.963 55.000 0.00 0.00 34.98 5.52
307 308 1.000717 GAAGGAGTATCTCTGCCGCTC 60.001 57.143 0.00 0.00 34.98 5.03
308 309 1.169661 AGGAGTATCTCTGCCGCTCG 61.170 60.000 0.00 0.00 34.98 5.03
309 310 1.284408 GAGTATCTCTGCCGCTCGG 59.716 63.158 3.56 3.56 38.57 4.63
310 311 1.448922 GAGTATCTCTGCCGCTCGGT 61.449 60.000 10.24 0.00 37.65 4.69
311 312 1.299468 GTATCTCTGCCGCTCGGTG 60.299 63.158 10.24 3.93 37.65 4.94
312 313 1.753078 TATCTCTGCCGCTCGGTGT 60.753 57.895 10.24 0.00 37.65 4.16
313 314 0.464916 TATCTCTGCCGCTCGGTGTA 60.465 55.000 10.24 0.00 37.65 2.90
314 315 1.729470 ATCTCTGCCGCTCGGTGTAG 61.729 60.000 10.24 6.61 37.65 2.74
315 316 4.129737 TCTGCCGCTCGGTGTAGC 62.130 66.667 10.24 0.00 39.21 3.58
316 317 4.135153 CTGCCGCTCGGTGTAGCT 62.135 66.667 10.24 0.00 40.49 3.32
317 318 4.129737 TGCCGCTCGGTGTAGCTC 62.130 66.667 10.24 0.00 40.49 4.09
318 319 4.129737 GCCGCTCGGTGTAGCTCA 62.130 66.667 10.24 0.00 40.49 4.26
319 320 2.808315 CCGCTCGGTGTAGCTCAT 59.192 61.111 0.00 0.00 40.49 2.90
320 321 1.589993 CCGCTCGGTGTAGCTCATG 60.590 63.158 0.00 0.00 40.49 3.07
321 322 2.233654 CGCTCGGTGTAGCTCATGC 61.234 63.158 0.00 0.00 40.49 4.06
322 323 1.884926 GCTCGGTGTAGCTCATGCC 60.885 63.158 0.00 0.00 39.50 4.40
323 324 1.819229 CTCGGTGTAGCTCATGCCT 59.181 57.895 0.00 0.00 40.80 4.75
324 325 0.176680 CTCGGTGTAGCTCATGCCTT 59.823 55.000 0.00 0.00 40.80 4.35
325 326 1.409064 CTCGGTGTAGCTCATGCCTTA 59.591 52.381 0.00 0.00 40.80 2.69
326 327 1.409064 TCGGTGTAGCTCATGCCTTAG 59.591 52.381 0.00 0.00 40.80 2.18
327 328 1.587547 GGTGTAGCTCATGCCTTAGC 58.412 55.000 0.00 0.00 40.80 3.09
328 329 1.587547 GTGTAGCTCATGCCTTAGCC 58.412 55.000 0.00 0.00 39.64 3.93
329 330 1.139853 GTGTAGCTCATGCCTTAGCCT 59.860 52.381 0.00 0.00 39.64 4.58
330 331 2.365617 GTGTAGCTCATGCCTTAGCCTA 59.634 50.000 0.00 0.00 39.64 3.93
331 332 2.630098 TGTAGCTCATGCCTTAGCCTAG 59.370 50.000 0.00 0.00 39.64 3.02
332 333 2.094100 AGCTCATGCCTTAGCCTAGA 57.906 50.000 0.75 0.00 39.64 2.43
333 334 1.969923 AGCTCATGCCTTAGCCTAGAG 59.030 52.381 0.75 0.00 39.64 2.43
334 335 1.691434 GCTCATGCCTTAGCCTAGAGT 59.309 52.381 0.00 0.00 38.69 3.24
335 336 2.894126 GCTCATGCCTTAGCCTAGAGTA 59.106 50.000 0.00 0.00 38.69 2.59
336 337 3.322254 GCTCATGCCTTAGCCTAGAGTAA 59.678 47.826 0.00 0.00 38.69 2.24
337 338 4.797933 GCTCATGCCTTAGCCTAGAGTAAC 60.798 50.000 0.00 0.00 38.69 2.50
338 339 3.318275 TCATGCCTTAGCCTAGAGTAACG 59.682 47.826 0.00 0.00 38.69 3.18
339 340 2.029623 TGCCTTAGCCTAGAGTAACGG 58.970 52.381 0.00 0.00 38.69 4.44
340 341 2.030371 GCCTTAGCCTAGAGTAACGGT 58.970 52.381 0.00 0.00 0.00 4.83
341 342 3.217626 GCCTTAGCCTAGAGTAACGGTA 58.782 50.000 0.00 0.00 0.00 4.02
342 343 3.633986 GCCTTAGCCTAGAGTAACGGTAA 59.366 47.826 0.00 0.00 0.00 2.85
343 344 4.498850 GCCTTAGCCTAGAGTAACGGTAAC 60.499 50.000 0.00 0.00 0.00 2.50
361 362 6.237313 GGTAACGTTCTTTGTTATTGCTCT 57.763 37.500 2.82 0.00 34.59 4.09
362 363 6.077838 GGTAACGTTCTTTGTTATTGCTCTG 58.922 40.000 2.82 0.00 34.59 3.35
363 364 4.147219 ACGTTCTTTGTTATTGCTCTGC 57.853 40.909 0.00 0.00 0.00 4.26
364 365 3.058224 ACGTTCTTTGTTATTGCTCTGCC 60.058 43.478 0.00 0.00 0.00 4.85
365 366 3.189287 CGTTCTTTGTTATTGCTCTGCCT 59.811 43.478 0.00 0.00 0.00 4.75
366 367 4.479619 GTTCTTTGTTATTGCTCTGCCTG 58.520 43.478 0.00 0.00 0.00 4.85
367 368 3.084039 TCTTTGTTATTGCTCTGCCTGG 58.916 45.455 0.00 0.00 0.00 4.45
368 369 1.838112 TTGTTATTGCTCTGCCTGGG 58.162 50.000 0.00 0.00 0.00 4.45
369 370 0.034186 TGTTATTGCTCTGCCTGGGG 60.034 55.000 0.00 0.00 0.00 4.96
389 390 4.659172 CTTGGCAGGGGCGGTGAA 62.659 66.667 0.00 0.00 42.47 3.18
390 391 3.944250 CTTGGCAGGGGCGGTGAAT 62.944 63.158 0.00 0.00 42.47 2.57
391 392 3.936772 TTGGCAGGGGCGGTGAATC 62.937 63.158 0.00 0.00 42.47 2.52
392 393 4.424711 GGCAGGGGCGGTGAATCA 62.425 66.667 0.00 0.00 42.47 2.57
393 394 3.134127 GCAGGGGCGGTGAATCAC 61.134 66.667 4.51 4.51 0.00 3.06
394 395 2.350895 CAGGGGCGGTGAATCACA 59.649 61.111 15.86 0.00 35.86 3.58
395 396 1.746615 CAGGGGCGGTGAATCACAG 60.747 63.158 15.86 12.46 35.86 3.66
396 397 2.224159 AGGGGCGGTGAATCACAGT 61.224 57.895 15.86 0.00 35.86 3.55
397 398 0.907704 AGGGGCGGTGAATCACAGTA 60.908 55.000 15.86 0.00 35.86 2.74
398 399 0.743345 GGGGCGGTGAATCACAGTAC 60.743 60.000 15.86 8.48 35.86 2.73
399 400 0.249398 GGGCGGTGAATCACAGTACT 59.751 55.000 15.86 0.00 35.86 2.73
400 401 1.359848 GGCGGTGAATCACAGTACTG 58.640 55.000 21.44 21.44 35.86 2.74
401 402 0.721718 GCGGTGAATCACAGTACTGC 59.278 55.000 22.90 6.64 38.14 4.40
402 403 1.673033 GCGGTGAATCACAGTACTGCT 60.673 52.381 22.90 7.43 41.11 4.24
403 404 2.416836 GCGGTGAATCACAGTACTGCTA 60.417 50.000 22.90 11.35 41.11 3.49
404 405 3.439293 CGGTGAATCACAGTACTGCTAG 58.561 50.000 22.90 12.87 35.86 3.42
405 406 3.119459 CGGTGAATCACAGTACTGCTAGT 60.119 47.826 22.90 10.15 35.86 2.57
406 407 4.177026 GGTGAATCACAGTACTGCTAGTG 58.823 47.826 22.90 13.28 35.86 2.74
407 408 4.177026 GTGAATCACAGTACTGCTAGTGG 58.823 47.826 22.90 5.93 34.08 4.00
408 409 3.832490 TGAATCACAGTACTGCTAGTGGT 59.168 43.478 22.90 6.97 33.01 4.16
409 410 5.014202 TGAATCACAGTACTGCTAGTGGTA 58.986 41.667 22.90 0.00 33.01 3.25
410 411 5.125578 TGAATCACAGTACTGCTAGTGGTAG 59.874 44.000 22.90 2.29 33.01 3.18
411 412 4.030314 TCACAGTACTGCTAGTGGTAGT 57.970 45.455 22.90 2.31 43.15 2.73
412 413 3.756963 TCACAGTACTGCTAGTGGTAGTG 59.243 47.826 22.90 20.33 40.92 2.74
413 414 3.090037 ACAGTACTGCTAGTGGTAGTGG 58.910 50.000 22.90 13.05 40.92 4.00
414 415 3.090037 CAGTACTGCTAGTGGTAGTGGT 58.910 50.000 10.54 0.00 40.92 4.16
415 416 4.263639 ACAGTACTGCTAGTGGTAGTGGTA 60.264 45.833 22.90 0.00 40.92 3.25
416 417 4.335874 CAGTACTGCTAGTGGTAGTGGTAG 59.664 50.000 10.54 0.00 40.92 3.18
425 426 3.022406 GTGGTAGTGGTAGAGTAGGTGG 58.978 54.545 0.00 0.00 0.00 4.61
434 435 2.233305 AGAGTAGGTGGTGGTACTGG 57.767 55.000 0.00 0.00 29.34 4.00
444 445 1.066358 GGTGGTACTGGAGTAACTGGC 60.066 57.143 3.59 0.00 38.94 4.85
447 448 1.403780 GGTACTGGAGTAACTGGCGTG 60.404 57.143 0.00 0.00 35.42 5.34
452 453 1.805945 GAGTAACTGGCGTGCTCCG 60.806 63.158 0.00 0.00 40.40 4.63
470 471 3.372554 GACTGTACCGGGAGCCAGC 62.373 68.421 6.32 0.00 0.00 4.85
508 509 2.732094 AACGTCGCCGAGGAAACG 60.732 61.111 14.36 3.59 40.77 3.60
519 523 1.135972 CGAGGAAACGGAAACTGCATG 60.136 52.381 0.00 0.00 0.00 4.06
527 531 2.159156 ACGGAAACTGCATGCTATACGA 60.159 45.455 20.33 0.00 0.00 3.43
529 533 2.802816 GGAAACTGCATGCTATACGAGG 59.197 50.000 20.33 1.69 0.00 4.63
534 548 0.039074 GCATGCTATACGAGGACGCT 60.039 55.000 11.37 0.00 43.96 5.07
858 919 2.032528 CCCAGTCAAAGGCGCAGA 59.967 61.111 10.83 0.00 0.00 4.26
859 920 1.600636 CCCAGTCAAAGGCGCAGAA 60.601 57.895 10.83 0.00 0.00 3.02
890 951 1.231958 TAAGACGCGCCCACCAAAAG 61.232 55.000 5.73 0.00 0.00 2.27
965 1042 3.490759 CACGCTACGCCAGGCAAG 61.491 66.667 13.30 9.40 0.00 4.01
966 1043 4.760047 ACGCTACGCCAGGCAAGG 62.760 66.667 13.30 5.17 0.00 3.61
967 1044 4.451150 CGCTACGCCAGGCAAGGA 62.451 66.667 13.30 0.00 0.00 3.36
970 1047 1.153549 CTACGCCAGGCAAGGAGAC 60.154 63.158 13.30 0.00 32.29 3.36
984 1068 3.398353 GAGACGAGACGAAGCGGGG 62.398 68.421 0.00 0.00 0.00 5.73
1005 1089 4.222847 GGGCGGACGGAGATGGTC 62.223 72.222 0.00 0.00 0.00 4.02
1156 1240 1.994507 CTCCTCCTCCAGCGTACGTG 61.995 65.000 17.90 13.20 0.00 4.49
1157 1241 2.202623 CTCCTCCAGCGTACGTGC 60.203 66.667 17.90 0.18 0.00 5.34
1158 1242 2.986979 TCCTCCAGCGTACGTGCA 60.987 61.111 17.90 0.00 37.31 4.57
1159 1243 2.809601 CCTCCAGCGTACGTGCAC 60.810 66.667 17.90 6.82 37.31 4.57
1160 1244 2.809601 CTCCAGCGTACGTGCACC 60.810 66.667 17.90 0.00 37.31 5.01
1206 1293 2.391724 TTTTCTTGCCCCTCGCTCGT 62.392 55.000 0.00 0.00 38.78 4.18
1207 1294 2.781595 TTTCTTGCCCCTCGCTCGTC 62.782 60.000 0.00 0.00 38.78 4.20
1221 1308 3.261441 TCGTCGGTCGATTAATGGC 57.739 52.632 0.00 0.00 44.01 4.40
1239 1326 0.166814 GCGATGCTTCTTGGTGTGTC 59.833 55.000 0.00 0.00 0.00 3.67
1285 1372 3.740128 ATGTCGATGCCGCTGGACC 62.740 63.158 0.00 0.00 35.37 4.46
1380 1467 4.097361 GACCTCAAGGACCGGGGC 62.097 72.222 6.32 0.00 38.94 5.80
1476 1563 2.401766 GCAGCGGGACAACATCAGG 61.402 63.158 0.00 0.00 0.00 3.86
1890 1977 2.642129 CTCTGCGGCGAGATCGAT 59.358 61.111 12.98 0.00 43.02 3.59
1959 2046 0.731417 CGCTCAAGCAAATCCTGGAG 59.269 55.000 1.52 0.00 42.21 3.86
1998 2085 4.504916 CTCCGCCACAGCTCTCCG 62.505 72.222 0.00 0.00 36.60 4.63
2043 2130 4.873129 CCGCCTCCCATCGTCGTG 62.873 72.222 0.00 0.00 0.00 4.35
2088 2175 2.972819 GCCTCCAACCTCTCCCACC 61.973 68.421 0.00 0.00 0.00 4.61
2106 2193 0.806102 CCAGGCGATTACGTGTCCAG 60.806 60.000 0.00 0.00 41.98 3.86
2259 2346 3.011760 GAAGCCGAACAACGCCGAG 62.012 63.158 0.00 0.00 41.07 4.63
2388 2475 3.699894 AGTGCCAGTGCCTCCTCG 61.700 66.667 0.00 0.00 36.33 4.63
2440 2529 0.250640 AGGTGGCAAACTCTCTGCTG 60.251 55.000 0.00 0.00 39.82 4.41
2473 2566 2.032799 TGCAACGTTTTCTCACATGTCC 59.967 45.455 0.00 0.00 0.00 4.02
2769 2873 3.450115 GACGAGGTGGTCCCCGAG 61.450 72.222 0.00 0.00 32.97 4.63
3274 3378 1.377536 GAAGCTGGCCTTCTGATCAC 58.622 55.000 3.32 0.00 45.27 3.06
3278 3382 0.907486 CTGGCCTTCTGATCACTCCA 59.093 55.000 3.32 0.00 0.00 3.86
3303 3414 4.823989 CACTCCCATGTCTAATCCAAATCC 59.176 45.833 0.00 0.00 0.00 3.01
3325 3436 1.253593 ACCACGATCAGAGCAGAGCA 61.254 55.000 0.00 0.00 0.00 4.26
3326 3437 0.104487 CCACGATCAGAGCAGAGCAT 59.896 55.000 0.00 0.00 0.00 3.79
3329 3440 2.793790 CACGATCAGAGCAGAGCATTAC 59.206 50.000 0.00 0.00 0.00 1.89
3330 3441 2.428530 ACGATCAGAGCAGAGCATTACA 59.571 45.455 0.00 0.00 0.00 2.41
3331 3442 3.118992 ACGATCAGAGCAGAGCATTACAA 60.119 43.478 0.00 0.00 0.00 2.41
3332 3443 3.244814 CGATCAGAGCAGAGCATTACAAC 59.755 47.826 0.00 0.00 0.00 3.32
3333 3444 3.969287 TCAGAGCAGAGCATTACAACT 57.031 42.857 0.00 0.00 0.00 3.16
3334 3445 5.595885 GATCAGAGCAGAGCATTACAACTA 58.404 41.667 0.00 0.00 0.00 2.24
3335 3446 5.003692 TCAGAGCAGAGCATTACAACTAG 57.996 43.478 0.00 0.00 0.00 2.57
3339 3450 7.068716 TCAGAGCAGAGCATTACAACTAGAATA 59.931 37.037 0.00 0.00 0.00 1.75
3340 3451 7.871973 CAGAGCAGAGCATTACAACTAGAATAT 59.128 37.037 0.00 0.00 0.00 1.28
3341 3452 8.087750 AGAGCAGAGCATTACAACTAGAATATC 58.912 37.037 0.00 0.00 0.00 1.63
3407 5644 5.947566 AGTTCTTACTCTTGTACTCCTCCTC 59.052 44.000 0.00 0.00 0.00 3.71
3408 5645 4.857679 TCTTACTCTTGTACTCCTCCTCC 58.142 47.826 0.00 0.00 0.00 4.30
3448 5700 4.791974 ACTGTTACGAGTACTACTGTTGC 58.208 43.478 0.00 0.00 0.00 4.17
3450 5702 5.702670 ACTGTTACGAGTACTACTGTTGCTA 59.297 40.000 0.00 0.00 0.00 3.49
3451 5703 6.128336 ACTGTTACGAGTACTACTGTTGCTAG 60.128 42.308 0.00 0.00 0.00 3.42
3455 5707 3.940221 CGAGTACTACTGTTGCTAGGAGT 59.060 47.826 0.00 6.38 44.06 3.85
3462 5714 7.957992 ACTACTGTTGCTAGGAGTAGTAATT 57.042 36.000 14.46 1.14 46.78 1.40
3464 5716 8.901793 ACTACTGTTGCTAGGAGTAGTAATTAC 58.098 37.037 14.46 7.57 46.78 1.89
3472 5724 3.887716 AGGAGTAGTAATTACGGCGATGT 59.112 43.478 16.62 0.00 37.35 3.06
3496 5748 1.228124 TGCTGCGTTTGTAAGCCCT 60.228 52.632 0.00 0.00 36.05 5.19
3497 5749 1.234615 TGCTGCGTTTGTAAGCCCTC 61.235 55.000 0.00 0.00 36.05 4.30
3509 5761 2.449137 AAGCCCTCCCAATGAATGAG 57.551 50.000 0.00 0.00 0.00 2.90
3550 5803 0.958822 AAGTGTGTTTTCCCGCCATC 59.041 50.000 0.00 0.00 0.00 3.51
3582 5835 5.316327 CTTTTAAGCTTAGGCCTCCTTTG 57.684 43.478 9.68 0.00 39.73 2.77
3583 5836 3.366052 TTAAGCTTAGGCCTCCTTTGG 57.634 47.619 9.68 0.00 39.73 3.28
3584 5837 1.076438 AAGCTTAGGCCTCCTTTGGT 58.924 50.000 9.68 0.00 39.73 3.67
3585 5838 1.076438 AGCTTAGGCCTCCTTTGGTT 58.924 50.000 9.68 0.00 39.73 3.67
3586 5839 1.429299 AGCTTAGGCCTCCTTTGGTTT 59.571 47.619 9.68 0.00 39.73 3.27
3587 5840 2.647802 AGCTTAGGCCTCCTTTGGTTTA 59.352 45.455 9.68 0.00 39.73 2.01
3588 5841 3.017442 GCTTAGGCCTCCTTTGGTTTAG 58.983 50.000 9.68 0.00 34.61 1.85
3589 5842 3.308188 GCTTAGGCCTCCTTTGGTTTAGA 60.308 47.826 9.68 0.00 34.61 2.10
3590 5843 4.518249 CTTAGGCCTCCTTTGGTTTAGAG 58.482 47.826 9.68 0.00 34.61 2.43
3599 5852 7.709149 CTCCTTTGGTTTAGAGGAAATTCAT 57.291 36.000 0.00 0.00 39.00 2.57
3600 5853 8.807948 CTCCTTTGGTTTAGAGGAAATTCATA 57.192 34.615 0.00 0.00 39.00 2.15
3601 5854 9.243105 CTCCTTTGGTTTAGAGGAAATTCATAA 57.757 33.333 0.00 0.00 39.00 1.90
3602 5855 9.243105 TCCTTTGGTTTAGAGGAAATTCATAAG 57.757 33.333 0.00 0.00 36.67 1.73
3603 5856 9.243105 CCTTTGGTTTAGAGGAAATTCATAAGA 57.757 33.333 0.00 0.00 32.11 2.10
3660 5913 8.792830 TTCATTTAGAGTCCTTTGTTCATAGG 57.207 34.615 3.49 3.49 0.00 2.57
3661 5914 8.146053 TCATTTAGAGTCCTTTGTTCATAGGA 57.854 34.615 7.68 7.68 38.22 2.94
3662 5915 8.602424 TCATTTAGAGTCCTTTGTTCATAGGAA 58.398 33.333 12.19 0.00 42.00 3.36
3663 5916 9.401058 CATTTAGAGTCCTTTGTTCATAGGAAT 57.599 33.333 12.19 11.51 42.00 3.01
3664 5917 8.792830 TTTAGAGTCCTTTGTTCATAGGAATG 57.207 34.615 14.60 0.00 42.00 2.67
3665 5918 5.749462 AGAGTCCTTTGTTCATAGGAATGG 58.251 41.667 14.60 0.00 42.00 3.16
3666 5919 5.488919 AGAGTCCTTTGTTCATAGGAATGGA 59.511 40.000 14.60 0.00 42.00 3.41
3667 5920 6.159398 AGAGTCCTTTGTTCATAGGAATGGAT 59.841 38.462 14.60 1.75 42.00 3.41
3668 5921 6.735556 AGTCCTTTGTTCATAGGAATGGATT 58.264 36.000 12.19 0.00 42.00 3.01
3669 5922 6.830838 AGTCCTTTGTTCATAGGAATGGATTC 59.169 38.462 12.19 0.00 42.00 2.52
3704 5957 4.503714 GGATTGGTTTCTATCCTCCACA 57.496 45.455 0.00 0.00 40.55 4.17
3705 5958 5.053978 GGATTGGTTTCTATCCTCCACAT 57.946 43.478 0.00 0.00 40.55 3.21
3706 5959 5.449553 GGATTGGTTTCTATCCTCCACATT 58.550 41.667 0.00 0.00 40.55 2.71
3707 5960 5.893824 GGATTGGTTTCTATCCTCCACATTT 59.106 40.000 0.00 0.00 40.55 2.32
3708 5961 6.039829 GGATTGGTTTCTATCCTCCACATTTC 59.960 42.308 0.00 0.00 40.55 2.17
3709 5962 5.512942 TGGTTTCTATCCTCCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
3710 5963 6.078456 TGGTTTCTATCCTCCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
3711 5964 7.206789 TGGTTTCTATCCTCCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
3712 5965 7.282585 TGGTTTCTATCCTCCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
3713 5966 7.127186 TGGTTTCTATCCTCCACATTTCATAGA 59.873 37.037 0.00 0.00 0.00 1.98
3714 5967 7.993183 GGTTTCTATCCTCCACATTTCATAGAA 59.007 37.037 0.00 0.00 33.19 2.10
3715 5968 9.396022 GTTTCTATCCTCCACATTTCATAGAAA 57.604 33.333 7.52 7.52 39.11 2.52
3716 5969 9.973661 TTTCTATCCTCCACATTTCATAGAAAA 57.026 29.630 8.71 0.00 38.76 2.29
3717 5970 9.973661 TTCTATCCTCCACATTTCATAGAAAAA 57.026 29.630 0.00 0.00 32.47 1.94
3745 5998 8.712228 AAAAAGAACCTAGACTCAATGGAATT 57.288 30.769 0.00 0.00 36.63 2.17
3746 5999 8.712228 AAAAGAACCTAGACTCAATGGAATTT 57.288 30.769 0.00 0.00 31.22 1.82
3747 6000 8.712228 AAAGAACCTAGACTCAATGGAATTTT 57.288 30.769 0.00 0.00 31.22 1.82
3748 6001 8.712228 AAGAACCTAGACTCAATGGAATTTTT 57.288 30.769 0.00 0.00 31.22 1.94
3782 6035 8.599624 ATCAACCAAATGATATCTTGTTTCCT 57.400 30.769 3.98 0.00 38.25 3.36
3783 6036 9.699410 ATCAACCAAATGATATCTTGTTTCCTA 57.301 29.630 3.98 0.00 38.25 2.94
3784 6037 9.699410 TCAACCAAATGATATCTTGTTTCCTAT 57.301 29.630 3.98 0.00 0.00 2.57
3787 6040 9.136323 ACCAAATGATATCTTGTTTCCTATTCC 57.864 33.333 3.98 0.00 0.00 3.01
3788 6041 9.359653 CCAAATGATATCTTGTTTCCTATTCCT 57.640 33.333 3.98 0.00 0.00 3.36
3827 6080 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
3828 6081 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
3829 6082 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
3830 6083 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
3831 6084 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
3832 6085 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
3833 6086 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
3834 6087 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
3835 6088 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
3836 6089 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
3837 6090 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
3838 6091 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3839 6092 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3841 6094 8.432805 TCTCATTTCCTACAAGATTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3842 6095 8.337118 TCATTTCCTACAAGATTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3843 6096 9.447279 TCATTTCCTACAAGATTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3846 6099 9.447279 TTTCCTACAAGATTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
3847 6100 9.621239 TTCCTACAAGATTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
3858 6111 9.621239 TTCCTATTCCTATGATAATTCTGTCCT 57.379 33.333 0.00 0.00 0.00 3.85
3865 6118 8.816894 TCCTATGATAATTCTGTCCTATGAACC 58.183 37.037 0.00 0.00 0.00 3.62
3866 6119 8.597167 CCTATGATAATTCTGTCCTATGAACCA 58.403 37.037 0.00 0.00 0.00 3.67
3869 6122 9.699410 ATGATAATTCTGTCCTATGAACCAAAA 57.301 29.630 0.00 0.00 0.00 2.44
3870 6123 9.527157 TGATAATTCTGTCCTATGAACCAAAAA 57.473 29.630 0.00 0.00 0.00 1.94
3902 6159 2.089980 CTTCTTTCCTCCCATGTGCTG 58.910 52.381 0.00 0.00 0.00 4.41
3903 6160 0.322816 TCTTTCCTCCCATGTGCTGC 60.323 55.000 0.00 0.00 0.00 5.25
3904 6161 1.651240 CTTTCCTCCCATGTGCTGCG 61.651 60.000 0.00 0.00 0.00 5.18
3905 6162 2.410322 TTTCCTCCCATGTGCTGCGT 62.410 55.000 0.00 0.00 0.00 5.24
3906 6163 3.129502 CCTCCCATGTGCTGCGTG 61.130 66.667 0.00 0.00 0.00 5.34
3911 6168 4.746951 CATGTGCTGCGTGGCGTG 62.747 66.667 0.00 0.00 34.52 5.34
3987 6244 3.298686 AAGGGAATCCGGATTTTCTCC 57.701 47.619 29.74 24.68 41.07 3.71
3998 6255 2.924290 GGATTTTCTCCTTGACTCGTCG 59.076 50.000 0.00 0.00 41.29 5.12
4009 6266 3.545481 CTCGTCGCGCACATGTCC 61.545 66.667 8.75 0.00 0.00 4.02
4090 6385 8.072238 TGTATCAACAGTCGTTATAATGCATC 57.928 34.615 0.00 0.00 32.75 3.91
4104 6399 0.512518 TGCATCTCAAGTGCGTTTCG 59.487 50.000 0.00 0.00 45.37 3.46
4129 6424 5.913137 TTCATTATTTTGAGGCCGTCAAT 57.087 34.783 15.50 7.77 44.89 2.57
4169 6466 5.135383 ACGCTATCCTACTGTGTATGGTTA 58.865 41.667 0.00 0.00 0.00 2.85
4170 6467 5.009410 ACGCTATCCTACTGTGTATGGTTAC 59.991 44.000 0.00 0.00 0.00 2.50
4199 6496 2.303311 ACTTGTCCAGTCTTTAGGCCTC 59.697 50.000 9.68 0.00 0.00 4.70
4211 6508 1.406065 TAGGCCTCTGCATGCTCTCC 61.406 60.000 20.33 12.32 40.13 3.71
4212 6509 2.588439 GCCTCTGCATGCTCTCCA 59.412 61.111 20.33 0.00 37.47 3.86
4215 6512 0.462225 CCTCTGCATGCTCTCCACTG 60.462 60.000 20.33 0.65 0.00 3.66
4218 6515 0.249676 CTGCATGCTCTCCACTGTCT 59.750 55.000 20.33 0.00 0.00 3.41
4220 6517 0.536260 GCATGCTCTCCACTGTCTCT 59.464 55.000 11.37 0.00 0.00 3.10
4230 6527 1.683385 CCACTGTCTCTCACACACTCA 59.317 52.381 0.00 0.00 0.00 3.41
4234 6531 3.243670 ACTGTCTCTCACACACTCACATG 60.244 47.826 0.00 0.00 0.00 3.21
4246 6543 6.148315 CACACACTCACATGATTCTTGTGTAT 59.852 38.462 24.02 14.84 43.12 2.29
4247 6544 6.369890 ACACACTCACATGATTCTTGTGTATC 59.630 38.462 24.02 0.00 43.15 2.24
4248 6545 6.369615 CACACTCACATGATTCTTGTGTATCA 59.630 38.462 24.02 10.44 43.86 2.15
4249 6546 6.592994 ACACTCACATGATTCTTGTGTATCAG 59.407 38.462 24.02 18.36 43.86 2.90
4250 6547 6.815142 CACTCACATGATTCTTGTGTATCAGA 59.185 38.462 24.02 9.63 43.86 3.27
4251 6548 7.494952 CACTCACATGATTCTTGTGTATCAGAT 59.505 37.037 24.02 9.00 43.86 2.90
4252 6549 7.494952 ACTCACATGATTCTTGTGTATCAGATG 59.505 37.037 24.02 12.28 43.86 2.90
4253 6550 7.558604 TCACATGATTCTTGTGTATCAGATGA 58.441 34.615 24.02 6.06 43.86 2.92
4254 6551 7.493645 TCACATGATTCTTGTGTATCAGATGAC 59.506 37.037 24.02 0.00 43.86 3.06
4255 6552 6.765036 ACATGATTCTTGTGTATCAGATGACC 59.235 38.462 0.00 0.00 34.34 4.02
4256 6553 5.674525 TGATTCTTGTGTATCAGATGACCC 58.325 41.667 0.00 0.00 0.00 4.46
4257 6554 5.426509 TGATTCTTGTGTATCAGATGACCCT 59.573 40.000 0.00 0.00 0.00 4.34
4258 6555 5.762179 TTCTTGTGTATCAGATGACCCTT 57.238 39.130 0.00 0.00 0.00 3.95
4259 6556 5.762179 TCTTGTGTATCAGATGACCCTTT 57.238 39.130 0.00 0.00 0.00 3.11
4260 6557 5.491070 TCTTGTGTATCAGATGACCCTTTG 58.509 41.667 0.00 0.00 0.00 2.77
4261 6558 3.609853 TGTGTATCAGATGACCCTTTGC 58.390 45.455 0.00 0.00 0.00 3.68
4262 6559 2.609459 GTGTATCAGATGACCCTTTGCG 59.391 50.000 0.00 0.00 0.00 4.85
4263 6560 1.599542 GTATCAGATGACCCTTTGCGC 59.400 52.381 0.00 0.00 0.00 6.09
4264 6561 0.749454 ATCAGATGACCCTTTGCGCC 60.749 55.000 4.18 0.00 0.00 6.53
4265 6562 2.436646 AGATGACCCTTTGCGCCG 60.437 61.111 4.18 0.00 0.00 6.46
4266 6563 3.508840 GATGACCCTTTGCGCCGG 61.509 66.667 4.18 0.00 0.00 6.13
4267 6564 3.969250 GATGACCCTTTGCGCCGGA 62.969 63.158 5.05 0.00 0.00 5.14
4268 6565 3.344137 ATGACCCTTTGCGCCGGAT 62.344 57.895 5.05 0.00 0.00 4.18
4269 6566 3.508840 GACCCTTTGCGCCGGATG 61.509 66.667 5.05 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.388499 GCGGTCTTTCCAGCGGGA 62.388 66.667 0.00 0.00 43.03 5.14
11 12 3.423154 GTGGCGCGGTCTTTCCAG 61.423 66.667 8.83 0.00 35.57 3.86
14 15 3.723348 GTGGTGGCGCGGTCTTTC 61.723 66.667 8.83 0.00 0.00 2.62
15 16 3.842925 ATGTGGTGGCGCGGTCTTT 62.843 57.895 8.83 0.00 0.00 2.52
16 17 4.329545 ATGTGGTGGCGCGGTCTT 62.330 61.111 8.83 0.00 0.00 3.01
25 26 4.343323 TGGGGACGCATGTGGTGG 62.343 66.667 11.65 0.00 0.00 4.61
26 27 2.747460 CTGGGGACGCATGTGGTG 60.747 66.667 11.65 0.00 0.00 4.17
27 28 4.033776 CCTGGGGACGCATGTGGT 62.034 66.667 11.65 0.79 0.00 4.16
28 29 2.191786 TAACCTGGGGACGCATGTGG 62.192 60.000 11.65 0.00 0.00 4.17
29 30 0.322098 TTAACCTGGGGACGCATGTG 60.322 55.000 4.30 4.30 0.00 3.21
30 31 0.402504 TTTAACCTGGGGACGCATGT 59.597 50.000 0.00 0.00 0.00 3.21
31 32 1.540267 TTTTAACCTGGGGACGCATG 58.460 50.000 0.00 0.00 0.00 4.06
32 33 2.525105 ATTTTAACCTGGGGACGCAT 57.475 45.000 0.00 0.00 0.00 4.73
33 34 2.306512 AGTATTTTAACCTGGGGACGCA 59.693 45.455 0.00 0.00 0.00 5.24
34 35 2.941064 GAGTATTTTAACCTGGGGACGC 59.059 50.000 0.00 0.00 0.00 5.19
35 36 4.439968 GAGAGTATTTTAACCTGGGGACG 58.560 47.826 0.00 0.00 0.00 4.79
36 37 4.473922 AGGAGAGTATTTTAACCTGGGGAC 59.526 45.833 0.00 0.00 0.00 4.46
37 38 4.706616 AGGAGAGTATTTTAACCTGGGGA 58.293 43.478 0.00 0.00 0.00 4.81
38 39 5.437946 GAAGGAGAGTATTTTAACCTGGGG 58.562 45.833 0.00 0.00 0.00 4.96
39 40 5.437946 GGAAGGAGAGTATTTTAACCTGGG 58.562 45.833 0.00 0.00 0.00 4.45
40 41 5.116882 CGGAAGGAGAGTATTTTAACCTGG 58.883 45.833 0.00 0.00 0.00 4.45
62 63 0.179210 CGCACCGGAAACATTTACCG 60.179 55.000 9.46 0.00 45.24 4.02
63 64 3.687340 CGCACCGGAAACATTTACC 57.313 52.632 9.46 0.00 0.00 2.85
80 81 3.762992 CACTACGTGCACGCACCG 61.763 66.667 37.35 24.07 43.49 4.94
96 97 1.890489 AGAGGTGTGTGTACATACGCA 59.110 47.619 29.64 15.27 43.66 5.24
97 98 2.259618 CAGAGGTGTGTGTACATACGC 58.740 52.381 23.51 23.51 38.63 4.42
98 99 2.259618 GCAGAGGTGTGTGTACATACG 58.740 52.381 16.70 3.92 38.63 3.06
99 100 3.313012 TGCAGAGGTGTGTGTACATAC 57.687 47.619 15.23 15.23 39.39 2.39
100 101 3.769300 AGATGCAGAGGTGTGTGTACATA 59.231 43.478 0.00 0.00 39.39 2.29
101 102 2.568956 AGATGCAGAGGTGTGTGTACAT 59.431 45.455 0.00 0.00 39.39 2.29
102 103 1.970640 AGATGCAGAGGTGTGTGTACA 59.029 47.619 0.00 0.00 0.00 2.90
103 104 2.341257 CAGATGCAGAGGTGTGTGTAC 58.659 52.381 0.00 0.00 0.00 2.90
104 105 1.338105 GCAGATGCAGAGGTGTGTGTA 60.338 52.381 0.00 0.00 41.59 2.90
105 106 0.604780 GCAGATGCAGAGGTGTGTGT 60.605 55.000 0.00 0.00 41.59 3.72
106 107 1.632948 CGCAGATGCAGAGGTGTGTG 61.633 60.000 5.55 0.00 42.21 3.82
107 108 1.375140 CGCAGATGCAGAGGTGTGT 60.375 57.895 5.55 0.00 42.21 3.72
108 109 1.375140 ACGCAGATGCAGAGGTGTG 60.375 57.895 5.55 0.00 42.21 3.82
109 110 1.375140 CACGCAGATGCAGAGGTGT 60.375 57.895 5.55 0.00 42.21 4.16
110 111 2.747822 GCACGCAGATGCAGAGGTG 61.748 63.158 5.55 5.98 45.39 4.00
111 112 2.435586 GCACGCAGATGCAGAGGT 60.436 61.111 5.55 0.00 45.39 3.85
112 113 3.561213 CGCACGCAGATGCAGAGG 61.561 66.667 5.55 0.00 46.47 3.69
113 114 2.812609 ACGCACGCAGATGCAGAG 60.813 61.111 5.55 1.38 46.47 3.35
114 115 3.113979 CACGCACGCAGATGCAGA 61.114 61.111 5.55 0.00 46.47 4.26
115 116 4.806481 GCACGCACGCAGATGCAG 62.806 66.667 5.55 0.69 46.47 4.41
117 118 4.388080 TTGCACGCACGCAGATGC 62.388 61.111 0.00 0.00 44.14 3.91
118 119 2.202260 CTTGCACGCACGCAGATG 60.202 61.111 0.00 0.00 44.14 2.90
119 120 2.666190 ACTTGCACGCACGCAGAT 60.666 55.556 0.00 0.00 44.14 2.90
120 121 3.639008 CACTTGCACGCACGCAGA 61.639 61.111 0.00 0.00 44.14 4.26
121 122 4.671549 CCACTTGCACGCACGCAG 62.672 66.667 0.00 0.00 44.14 5.18
145 146 2.740714 CTTTTCCTCGAAGCCGGCG 61.741 63.158 23.20 7.22 36.24 6.46
146 147 2.399356 CCTTTTCCTCGAAGCCGGC 61.399 63.158 21.89 21.89 36.24 6.13
147 148 1.003718 ACCTTTTCCTCGAAGCCGG 60.004 57.895 0.00 0.00 36.24 6.13
148 149 0.320421 TCACCTTTTCCTCGAAGCCG 60.320 55.000 0.00 0.00 37.07 5.52
149 150 1.443802 CTCACCTTTTCCTCGAAGCC 58.556 55.000 0.00 0.00 0.00 4.35
150 151 1.443802 CCTCACCTTTTCCTCGAAGC 58.556 55.000 0.00 0.00 0.00 3.86
151 152 1.443802 GCCTCACCTTTTCCTCGAAG 58.556 55.000 0.00 0.00 0.00 3.79
152 153 0.320421 CGCCTCACCTTTTCCTCGAA 60.320 55.000 0.00 0.00 0.00 3.71
153 154 1.183030 TCGCCTCACCTTTTCCTCGA 61.183 55.000 0.00 0.00 0.00 4.04
154 155 0.108138 ATCGCCTCACCTTTTCCTCG 60.108 55.000 0.00 0.00 0.00 4.63
155 156 1.373570 CATCGCCTCACCTTTTCCTC 58.626 55.000 0.00 0.00 0.00 3.71
156 157 0.678048 GCATCGCCTCACCTTTTCCT 60.678 55.000 0.00 0.00 0.00 3.36
157 158 1.657751 GGCATCGCCTCACCTTTTCC 61.658 60.000 0.00 0.00 46.69 3.13
158 159 1.803289 GGCATCGCCTCACCTTTTC 59.197 57.895 0.00 0.00 46.69 2.29
159 160 4.002797 GGCATCGCCTCACCTTTT 57.997 55.556 0.00 0.00 46.69 2.27
174 175 4.152625 CTTGCGTAGTGCTGCGGC 62.153 66.667 11.65 11.65 46.63 6.53
175 176 3.490759 CCTTGCGTAGTGCTGCGG 61.491 66.667 11.25 0.00 46.63 5.69
176 177 2.738521 ACCTTGCGTAGTGCTGCG 60.739 61.111 5.36 5.36 46.63 5.18
177 178 2.680913 CCACCTTGCGTAGTGCTGC 61.681 63.158 0.00 0.00 46.63 5.25
178 179 2.680913 GCCACCTTGCGTAGTGCTG 61.681 63.158 0.00 0.00 46.63 4.41
179 180 2.358737 GCCACCTTGCGTAGTGCT 60.359 61.111 0.00 0.00 46.63 4.40
187 188 0.671796 AGTTTTTACCGCCACCTTGC 59.328 50.000 0.00 0.00 0.00 4.01
188 189 1.000717 CCAGTTTTTACCGCCACCTTG 60.001 52.381 0.00 0.00 0.00 3.61
189 190 1.133730 TCCAGTTTTTACCGCCACCTT 60.134 47.619 0.00 0.00 0.00 3.50
190 191 0.475044 TCCAGTTTTTACCGCCACCT 59.525 50.000 0.00 0.00 0.00 4.00
191 192 1.320507 TTCCAGTTTTTACCGCCACC 58.679 50.000 0.00 0.00 0.00 4.61
192 193 2.619646 TCTTTCCAGTTTTTACCGCCAC 59.380 45.455 0.00 0.00 0.00 5.01
193 194 2.933573 TCTTTCCAGTTTTTACCGCCA 58.066 42.857 0.00 0.00 0.00 5.69
194 195 3.994204 TTCTTTCCAGTTTTTACCGCC 57.006 42.857 0.00 0.00 0.00 6.13
195 196 6.037726 TCTTTTTCTTTCCAGTTTTTACCGC 58.962 36.000 0.00 0.00 0.00 5.68
196 197 6.695713 CCTCTTTTTCTTTCCAGTTTTTACCG 59.304 38.462 0.00 0.00 0.00 4.02
197 198 6.479001 GCCTCTTTTTCTTTCCAGTTTTTACC 59.521 38.462 0.00 0.00 0.00 2.85
198 199 6.198403 CGCCTCTTTTTCTTTCCAGTTTTTAC 59.802 38.462 0.00 0.00 0.00 2.01
199 200 6.127563 ACGCCTCTTTTTCTTTCCAGTTTTTA 60.128 34.615 0.00 0.00 0.00 1.52
200 201 5.109210 CGCCTCTTTTTCTTTCCAGTTTTT 58.891 37.500 0.00 0.00 0.00 1.94
201 202 4.159693 ACGCCTCTTTTTCTTTCCAGTTTT 59.840 37.500 0.00 0.00 0.00 2.43
202 203 3.699538 ACGCCTCTTTTTCTTTCCAGTTT 59.300 39.130 0.00 0.00 0.00 2.66
203 204 3.288092 ACGCCTCTTTTTCTTTCCAGTT 58.712 40.909 0.00 0.00 0.00 3.16
204 205 2.932261 ACGCCTCTTTTTCTTTCCAGT 58.068 42.857 0.00 0.00 0.00 4.00
205 206 3.632189 CAACGCCTCTTTTTCTTTCCAG 58.368 45.455 0.00 0.00 0.00 3.86
206 207 2.223711 GCAACGCCTCTTTTTCTTTCCA 60.224 45.455 0.00 0.00 0.00 3.53
207 208 2.034685 AGCAACGCCTCTTTTTCTTTCC 59.965 45.455 0.00 0.00 0.00 3.13
208 209 3.045688 CAGCAACGCCTCTTTTTCTTTC 58.954 45.455 0.00 0.00 0.00 2.62
209 210 2.799562 GCAGCAACGCCTCTTTTTCTTT 60.800 45.455 0.00 0.00 0.00 2.52
210 211 1.269257 GCAGCAACGCCTCTTTTTCTT 60.269 47.619 0.00 0.00 0.00 2.52
211 212 0.312102 GCAGCAACGCCTCTTTTTCT 59.688 50.000 0.00 0.00 0.00 2.52
212 213 0.312102 AGCAGCAACGCCTCTTTTTC 59.688 50.000 0.00 0.00 0.00 2.29
213 214 0.312102 GAGCAGCAACGCCTCTTTTT 59.688 50.000 0.00 0.00 0.00 1.94
214 215 1.845809 CGAGCAGCAACGCCTCTTTT 61.846 55.000 0.00 0.00 0.00 2.27
215 216 2.320587 CGAGCAGCAACGCCTCTTT 61.321 57.895 0.00 0.00 0.00 2.52
216 217 2.740055 CGAGCAGCAACGCCTCTT 60.740 61.111 0.00 0.00 0.00 2.85
217 218 4.749310 CCGAGCAGCAACGCCTCT 62.749 66.667 0.00 0.00 0.00 3.69
218 219 4.742201 TCCGAGCAGCAACGCCTC 62.742 66.667 0.00 0.00 0.00 4.70
219 220 4.087892 ATCCGAGCAGCAACGCCT 62.088 61.111 0.00 0.00 0.00 5.52
220 221 3.567797 GATCCGAGCAGCAACGCC 61.568 66.667 0.00 0.00 0.00 5.68
221 222 3.567797 GGATCCGAGCAGCAACGC 61.568 66.667 0.00 0.00 0.00 4.84
222 223 1.448540 AAGGATCCGAGCAGCAACG 60.449 57.895 5.98 0.00 0.00 4.10
223 224 1.372087 CCAAGGATCCGAGCAGCAAC 61.372 60.000 5.98 0.00 0.00 4.17
224 225 1.078214 CCAAGGATCCGAGCAGCAA 60.078 57.895 5.98 0.00 0.00 3.91
225 226 2.586245 CCAAGGATCCGAGCAGCA 59.414 61.111 5.98 0.00 0.00 4.41
226 227 2.203126 CCCAAGGATCCGAGCAGC 60.203 66.667 5.98 0.00 0.00 5.25
227 228 2.203126 GCCCAAGGATCCGAGCAG 60.203 66.667 5.98 0.00 0.00 4.24
228 229 3.797353 GGCCCAAGGATCCGAGCA 61.797 66.667 5.98 0.00 0.00 4.26
229 230 4.570874 GGGCCCAAGGATCCGAGC 62.571 72.222 19.95 7.90 0.00 5.03
230 231 4.241555 CGGGCCCAAGGATCCGAG 62.242 72.222 24.92 2.55 41.18 4.63
234 235 4.883354 CTGCCGGGCCCAAGGATC 62.883 72.222 24.92 4.45 0.00 3.36
248 249 4.575245 GTTGGATACGCGCGCTGC 62.575 66.667 32.58 23.01 42.51 5.25
249 250 3.185365 TGTTGGATACGCGCGCTG 61.185 61.111 32.58 23.88 42.51 5.18
250 251 3.186047 GTGTTGGATACGCGCGCT 61.186 61.111 32.58 18.63 42.51 5.92
251 252 3.186047 AGTGTTGGATACGCGCGC 61.186 61.111 32.58 23.91 42.18 6.86
252 253 1.145759 ATCAGTGTTGGATACGCGCG 61.146 55.000 30.96 30.96 42.18 6.86
253 254 1.847818 TATCAGTGTTGGATACGCGC 58.152 50.000 5.73 0.00 42.18 6.86
254 255 4.048504 TGATTATCAGTGTTGGATACGCG 58.951 43.478 3.53 3.53 42.18 6.01
255 256 5.615544 GCATGATTATCAGTGTTGGATACGC 60.616 44.000 0.00 0.00 42.51 4.42
256 257 5.106948 GGCATGATTATCAGTGTTGGATACG 60.107 44.000 0.00 0.00 42.51 3.06
257 258 5.182001 GGGCATGATTATCAGTGTTGGATAC 59.818 44.000 0.00 0.00 0.00 2.24
258 259 5.316167 GGGCATGATTATCAGTGTTGGATA 58.684 41.667 0.00 0.00 0.00 2.59
259 260 4.147321 GGGCATGATTATCAGTGTTGGAT 58.853 43.478 0.00 0.00 0.00 3.41
260 261 3.554934 GGGCATGATTATCAGTGTTGGA 58.445 45.455 0.00 0.00 0.00 3.53
261 262 2.291465 CGGGCATGATTATCAGTGTTGG 59.709 50.000 0.00 0.00 0.00 3.77
262 263 2.291465 CCGGGCATGATTATCAGTGTTG 59.709 50.000 0.00 0.00 0.00 3.33
263 264 2.092429 ACCGGGCATGATTATCAGTGTT 60.092 45.455 6.32 0.00 0.00 3.32
264 265 1.490490 ACCGGGCATGATTATCAGTGT 59.510 47.619 6.32 0.00 0.00 3.55
265 266 1.875514 CACCGGGCATGATTATCAGTG 59.124 52.381 6.32 0.00 0.00 3.66
266 267 1.202806 CCACCGGGCATGATTATCAGT 60.203 52.381 6.32 0.00 0.00 3.41
267 268 1.527034 CCACCGGGCATGATTATCAG 58.473 55.000 6.32 0.00 0.00 2.90
268 269 0.110295 CCCACCGGGCATGATTATCA 59.890 55.000 6.32 0.00 35.35 2.15
269 270 0.400213 TCCCACCGGGCATGATTATC 59.600 55.000 6.32 0.00 43.94 1.75
270 271 0.850100 TTCCCACCGGGCATGATTAT 59.150 50.000 6.32 0.00 43.94 1.28
271 272 0.182537 CTTCCCACCGGGCATGATTA 59.817 55.000 6.32 0.00 43.94 1.75
272 273 1.076777 CTTCCCACCGGGCATGATT 60.077 57.895 6.32 0.00 43.94 2.57
273 274 2.597340 CTTCCCACCGGGCATGAT 59.403 61.111 6.32 0.00 43.94 2.45
274 275 3.727258 CCTTCCCACCGGGCATGA 61.727 66.667 6.32 0.00 43.94 3.07
275 276 3.704231 CTCCTTCCCACCGGGCATG 62.704 68.421 6.32 0.00 43.94 4.06
276 277 2.833151 TACTCCTTCCCACCGGGCAT 62.833 60.000 6.32 0.00 43.94 4.40
277 278 2.833151 ATACTCCTTCCCACCGGGCA 62.833 60.000 6.32 0.00 43.94 5.36
278 279 2.041206 GATACTCCTTCCCACCGGGC 62.041 65.000 6.32 0.00 43.94 6.13
279 280 0.398664 AGATACTCCTTCCCACCGGG 60.399 60.000 6.32 0.00 46.11 5.73
280 281 1.041437 GAGATACTCCTTCCCACCGG 58.959 60.000 0.00 0.00 0.00 5.28
281 282 1.683917 CAGAGATACTCCTTCCCACCG 59.316 57.143 0.00 0.00 0.00 4.94
282 283 1.414550 GCAGAGATACTCCTTCCCACC 59.585 57.143 0.00 0.00 0.00 4.61
283 284 1.414550 GGCAGAGATACTCCTTCCCAC 59.585 57.143 0.00 0.00 0.00 4.61
284 285 1.794714 GGCAGAGATACTCCTTCCCA 58.205 55.000 0.00 0.00 0.00 4.37
285 286 0.676736 CGGCAGAGATACTCCTTCCC 59.323 60.000 0.00 0.00 0.00 3.97
286 287 0.032815 GCGGCAGAGATACTCCTTCC 59.967 60.000 0.00 0.00 0.00 3.46
287 288 1.000717 GAGCGGCAGAGATACTCCTTC 60.001 57.143 1.45 0.00 0.00 3.46
288 289 1.036707 GAGCGGCAGAGATACTCCTT 58.963 55.000 1.45 0.00 0.00 3.36
289 290 1.169661 CGAGCGGCAGAGATACTCCT 61.170 60.000 1.45 0.00 0.00 3.69
290 291 1.284408 CGAGCGGCAGAGATACTCC 59.716 63.158 1.45 0.00 0.00 3.85
291 292 1.284408 CCGAGCGGCAGAGATACTC 59.716 63.158 1.45 0.00 0.00 2.59
292 293 1.454111 ACCGAGCGGCAGAGATACT 60.454 57.895 9.14 0.00 39.32 2.12
293 294 1.299468 CACCGAGCGGCAGAGATAC 60.299 63.158 9.14 0.00 39.32 2.24
294 295 0.464916 TACACCGAGCGGCAGAGATA 60.465 55.000 9.14 0.00 39.32 1.98
295 296 1.729470 CTACACCGAGCGGCAGAGAT 61.729 60.000 9.14 0.00 39.32 2.75
296 297 2.360726 TACACCGAGCGGCAGAGA 60.361 61.111 9.14 0.00 39.32 3.10
297 298 2.103143 CTACACCGAGCGGCAGAG 59.897 66.667 9.14 0.00 39.32 3.35
298 299 4.129737 GCTACACCGAGCGGCAGA 62.130 66.667 9.14 0.00 39.32 4.26
304 305 1.884926 GGCATGAGCTACACCGAGC 60.885 63.158 0.00 0.00 43.19 5.03
305 306 0.176680 AAGGCATGAGCTACACCGAG 59.823 55.000 0.00 0.00 41.70 4.63
306 307 1.409064 CTAAGGCATGAGCTACACCGA 59.591 52.381 0.00 0.00 41.70 4.69
307 308 1.858091 CTAAGGCATGAGCTACACCG 58.142 55.000 0.00 0.00 41.70 4.94
308 309 1.587547 GCTAAGGCATGAGCTACACC 58.412 55.000 0.00 0.00 41.70 4.16
309 310 1.139853 AGGCTAAGGCATGAGCTACAC 59.860 52.381 7.82 0.00 41.70 2.90
310 311 1.500474 AGGCTAAGGCATGAGCTACA 58.500 50.000 7.82 0.00 41.70 2.74
311 312 2.894126 TCTAGGCTAAGGCATGAGCTAC 59.106 50.000 7.82 0.00 41.70 3.58
312 313 3.161067 CTCTAGGCTAAGGCATGAGCTA 58.839 50.000 7.82 0.00 41.70 3.32
313 314 1.969923 CTCTAGGCTAAGGCATGAGCT 59.030 52.381 7.82 0.00 41.70 4.09
314 315 1.691434 ACTCTAGGCTAAGGCATGAGC 59.309 52.381 0.00 0.00 40.87 4.26
315 316 4.557695 CGTTACTCTAGGCTAAGGCATGAG 60.558 50.000 0.00 0.16 40.87 2.90
316 317 3.318275 CGTTACTCTAGGCTAAGGCATGA 59.682 47.826 0.00 0.00 40.87 3.07
317 318 3.553096 CCGTTACTCTAGGCTAAGGCATG 60.553 52.174 0.00 0.00 40.87 4.06
318 319 2.628657 CCGTTACTCTAGGCTAAGGCAT 59.371 50.000 0.00 0.00 40.87 4.40
319 320 2.029623 CCGTTACTCTAGGCTAAGGCA 58.970 52.381 0.00 0.00 40.87 4.75
320 321 2.030371 ACCGTTACTCTAGGCTAAGGC 58.970 52.381 0.00 0.00 37.82 4.35
321 322 4.260948 CGTTACCGTTACTCTAGGCTAAGG 60.261 50.000 0.00 0.00 0.00 2.69
322 323 4.842029 CGTTACCGTTACTCTAGGCTAAG 58.158 47.826 0.00 0.00 0.00 2.18
323 324 4.882671 CGTTACCGTTACTCTAGGCTAA 57.117 45.455 0.00 0.00 0.00 3.09
337 338 5.025986 AGCAATAACAAAGAACGTTACCG 57.974 39.130 0.00 0.00 40.83 4.02
338 339 6.077838 CAGAGCAATAACAAAGAACGTTACC 58.922 40.000 0.00 0.00 31.94 2.85
339 340 5.564127 GCAGAGCAATAACAAAGAACGTTAC 59.436 40.000 0.00 0.00 31.94 2.50
340 341 5.334569 GGCAGAGCAATAACAAAGAACGTTA 60.335 40.000 0.00 0.00 33.59 3.18
341 342 4.537015 GCAGAGCAATAACAAAGAACGTT 58.463 39.130 0.00 0.00 0.00 3.99
342 343 3.058224 GGCAGAGCAATAACAAAGAACGT 60.058 43.478 0.00 0.00 0.00 3.99
343 344 3.189287 AGGCAGAGCAATAACAAAGAACG 59.811 43.478 0.00 0.00 0.00 3.95
344 345 4.479619 CAGGCAGAGCAATAACAAAGAAC 58.520 43.478 0.00 0.00 0.00 3.01
345 346 3.507233 CCAGGCAGAGCAATAACAAAGAA 59.493 43.478 0.00 0.00 0.00 2.52
346 347 3.084039 CCAGGCAGAGCAATAACAAAGA 58.916 45.455 0.00 0.00 0.00 2.52
347 348 2.165030 CCCAGGCAGAGCAATAACAAAG 59.835 50.000 0.00 0.00 0.00 2.77
348 349 2.170166 CCCAGGCAGAGCAATAACAAA 58.830 47.619 0.00 0.00 0.00 2.83
349 350 1.616725 CCCCAGGCAGAGCAATAACAA 60.617 52.381 0.00 0.00 0.00 2.83
350 351 0.034186 CCCCAGGCAGAGCAATAACA 60.034 55.000 0.00 0.00 0.00 2.41
351 352 2.799176 CCCCAGGCAGAGCAATAAC 58.201 57.895 0.00 0.00 0.00 1.89
372 373 3.944250 ATTCACCGCCCCTGCCAAG 62.944 63.158 0.00 0.00 0.00 3.61
373 374 3.936772 GATTCACCGCCCCTGCCAA 62.937 63.158 0.00 0.00 0.00 4.52
374 375 4.424711 GATTCACCGCCCCTGCCA 62.425 66.667 0.00 0.00 0.00 4.92
375 376 4.424711 TGATTCACCGCCCCTGCC 62.425 66.667 0.00 0.00 0.00 4.85
376 377 3.134127 GTGATTCACCGCCCCTGC 61.134 66.667 5.44 0.00 0.00 4.85
377 378 1.746615 CTGTGATTCACCGCCCCTG 60.747 63.158 14.05 0.00 32.73 4.45
378 379 0.907704 TACTGTGATTCACCGCCCCT 60.908 55.000 14.05 0.00 32.73 4.79
379 380 0.743345 GTACTGTGATTCACCGCCCC 60.743 60.000 14.05 0.00 32.73 5.80
380 381 0.249398 AGTACTGTGATTCACCGCCC 59.751 55.000 14.05 2.60 32.73 6.13
381 382 1.359848 CAGTACTGTGATTCACCGCC 58.640 55.000 15.06 2.92 32.73 6.13
382 383 0.721718 GCAGTACTGTGATTCACCGC 59.278 55.000 23.44 1.75 32.73 5.68
383 384 2.370281 AGCAGTACTGTGATTCACCG 57.630 50.000 23.44 10.26 32.73 4.94
384 385 4.177026 CACTAGCAGTACTGTGATTCACC 58.823 47.826 23.44 4.85 32.73 4.02
385 386 4.177026 CCACTAGCAGTACTGTGATTCAC 58.823 47.826 23.44 9.93 32.42 3.18
386 387 3.832490 ACCACTAGCAGTACTGTGATTCA 59.168 43.478 23.44 2.99 32.42 2.57
387 388 4.457834 ACCACTAGCAGTACTGTGATTC 57.542 45.455 23.44 7.01 32.42 2.52
388 389 5.017490 ACTACCACTAGCAGTACTGTGATT 58.983 41.667 23.44 10.00 32.42 2.57
389 390 4.399618 CACTACCACTAGCAGTACTGTGAT 59.600 45.833 23.44 12.64 32.42 3.06
390 391 3.756963 CACTACCACTAGCAGTACTGTGA 59.243 47.826 23.44 11.13 32.42 3.58
391 392 3.119459 CCACTACCACTAGCAGTACTGTG 60.119 52.174 23.44 13.57 0.00 3.66
392 393 3.090037 CCACTACCACTAGCAGTACTGT 58.910 50.000 23.44 12.90 0.00 3.55
393 394 3.090037 ACCACTACCACTAGCAGTACTG 58.910 50.000 18.93 18.93 0.00 2.74
394 395 3.453059 ACCACTACCACTAGCAGTACT 57.547 47.619 0.00 0.00 0.00 2.73
395 396 4.521146 TCTACCACTACCACTAGCAGTAC 58.479 47.826 0.00 0.00 0.00 2.73
396 397 4.226846 ACTCTACCACTACCACTAGCAGTA 59.773 45.833 0.00 0.00 0.00 2.74
397 398 3.010361 ACTCTACCACTACCACTAGCAGT 59.990 47.826 0.00 0.00 0.00 4.40
398 399 3.622630 ACTCTACCACTACCACTAGCAG 58.377 50.000 0.00 0.00 0.00 4.24
399 400 3.733883 ACTCTACCACTACCACTAGCA 57.266 47.619 0.00 0.00 0.00 3.49
400 401 4.136051 CCTACTCTACCACTACCACTAGC 58.864 52.174 0.00 0.00 0.00 3.42
401 402 5.124645 CACCTACTCTACCACTACCACTAG 58.875 50.000 0.00 0.00 0.00 2.57
402 403 4.080129 CCACCTACTCTACCACTACCACTA 60.080 50.000 0.00 0.00 0.00 2.74
403 404 3.308976 CCACCTACTCTACCACTACCACT 60.309 52.174 0.00 0.00 0.00 4.00
404 405 3.022406 CCACCTACTCTACCACTACCAC 58.978 54.545 0.00 0.00 0.00 4.16
405 406 2.651334 ACCACCTACTCTACCACTACCA 59.349 50.000 0.00 0.00 0.00 3.25
406 407 3.022406 CACCACCTACTCTACCACTACC 58.978 54.545 0.00 0.00 0.00 3.18
407 408 3.022406 CCACCACCTACTCTACCACTAC 58.978 54.545 0.00 0.00 0.00 2.73
408 409 2.651334 ACCACCACCTACTCTACCACTA 59.349 50.000 0.00 0.00 0.00 2.74
409 410 1.432024 ACCACCACCTACTCTACCACT 59.568 52.381 0.00 0.00 0.00 4.00
410 411 1.934410 ACCACCACCTACTCTACCAC 58.066 55.000 0.00 0.00 0.00 4.16
411 412 2.651334 AGTACCACCACCTACTCTACCA 59.349 50.000 0.00 0.00 0.00 3.25
412 413 3.022406 CAGTACCACCACCTACTCTACC 58.978 54.545 0.00 0.00 0.00 3.18
413 414 3.022406 CCAGTACCACCACCTACTCTAC 58.978 54.545 0.00 0.00 0.00 2.59
414 415 2.921612 TCCAGTACCACCACCTACTCTA 59.078 50.000 0.00 0.00 0.00 2.43
415 416 1.714787 TCCAGTACCACCACCTACTCT 59.285 52.381 0.00 0.00 0.00 3.24
416 417 2.100989 CTCCAGTACCACCACCTACTC 58.899 57.143 0.00 0.00 0.00 2.59
425 426 1.403780 CGCCAGTTACTCCAGTACCAC 60.404 57.143 0.00 0.00 0.00 4.16
434 435 1.805945 CGGAGCACGCCAGTTACTC 60.806 63.158 0.00 0.00 34.82 2.59
444 445 2.202440 CGGTACAGTCGGAGCACG 60.202 66.667 0.00 0.00 46.11 5.34
452 453 2.893398 CTGGCTCCCGGTACAGTC 59.107 66.667 0.00 0.00 0.00 3.51
470 471 1.933500 GCTTCATGTGTGCAAGCAAGG 60.934 52.381 10.34 0.00 37.88 3.61
508 509 2.802816 CCTCGTATAGCATGCAGTTTCC 59.197 50.000 21.98 1.22 0.00 3.13
510 511 3.458189 GTCCTCGTATAGCATGCAGTTT 58.542 45.455 21.98 0.61 0.00 2.66
511 512 2.543861 CGTCCTCGTATAGCATGCAGTT 60.544 50.000 21.98 6.37 0.00 3.16
513 514 1.691127 CGTCCTCGTATAGCATGCAG 58.309 55.000 21.98 6.99 0.00 4.41
519 523 0.238817 CTCCAGCGTCCTCGTATAGC 59.761 60.000 0.00 0.00 39.49 2.97
534 548 0.613572 TATCCACAGACGCCACTCCA 60.614 55.000 0.00 0.00 0.00 3.86
670 707 4.025858 TCAGTCAGGCAGGCAGGC 62.026 66.667 0.00 0.00 44.61 4.85
671 708 2.046507 GTCAGTCAGGCAGGCAGG 60.047 66.667 0.00 0.00 0.00 4.85
672 709 1.079266 GAGTCAGTCAGGCAGGCAG 60.079 63.158 0.00 0.00 0.00 4.85
673 710 2.587247 GGAGTCAGTCAGGCAGGCA 61.587 63.158 0.00 0.00 0.00 4.75
674 711 2.116983 TTGGAGTCAGTCAGGCAGGC 62.117 60.000 0.00 0.00 0.00 4.85
675 712 0.321122 GTTGGAGTCAGTCAGGCAGG 60.321 60.000 0.00 0.00 0.00 4.85
676 713 0.683973 AGTTGGAGTCAGTCAGGCAG 59.316 55.000 0.00 0.00 0.00 4.85
677 714 0.394192 CAGTTGGAGTCAGTCAGGCA 59.606 55.000 0.00 0.00 0.00 4.75
678 715 0.394565 ACAGTTGGAGTCAGTCAGGC 59.605 55.000 0.00 0.00 0.00 4.85
679 716 4.058817 GTTTACAGTTGGAGTCAGTCAGG 58.941 47.826 0.00 0.00 0.00 3.86
683 720 4.442706 CAGTGTTTACAGTTGGAGTCAGT 58.557 43.478 0.00 0.00 0.00 3.41
720 758 0.442699 CGAGCCGCAGAGGTAAAAAC 59.557 55.000 0.00 0.00 43.70 2.43
817 855 0.240945 GACGAAAACCATGTGGCAGG 59.759 55.000 0.00 0.00 39.32 4.85
828 889 0.863799 GACTGGGAACGGACGAAAAC 59.136 55.000 0.00 0.00 41.09 2.43
952 1029 1.153549 GTCTCCTTGCCTGGCGTAG 60.154 63.158 14.98 13.41 0.00 3.51
953 1030 2.978824 GTCTCCTTGCCTGGCGTA 59.021 61.111 14.98 3.53 0.00 4.42
954 1031 4.379243 CGTCTCCTTGCCTGGCGT 62.379 66.667 14.98 0.00 0.00 5.68
955 1032 3.997064 CTCGTCTCCTTGCCTGGCG 62.997 68.421 14.98 0.00 0.00 5.69
956 1033 2.125350 CTCGTCTCCTTGCCTGGC 60.125 66.667 12.87 12.87 0.00 4.85
957 1034 1.216710 GTCTCGTCTCCTTGCCTGG 59.783 63.158 0.00 0.00 0.00 4.45
958 1035 1.153939 CGTCTCGTCTCCTTGCCTG 60.154 63.158 0.00 0.00 0.00 4.85
960 1037 0.456995 CTTCGTCTCGTCTCCTTGCC 60.457 60.000 0.00 0.00 0.00 4.52
961 1038 1.073768 GCTTCGTCTCGTCTCCTTGC 61.074 60.000 0.00 0.00 0.00 4.01
963 1040 1.502640 CGCTTCGTCTCGTCTCCTT 59.497 57.895 0.00 0.00 0.00 3.36
964 1041 2.400158 CCGCTTCGTCTCGTCTCCT 61.400 63.158 0.00 0.00 0.00 3.69
965 1042 2.100603 CCGCTTCGTCTCGTCTCC 59.899 66.667 0.00 0.00 0.00 3.71
966 1043 2.100603 CCCGCTTCGTCTCGTCTC 59.899 66.667 0.00 0.00 0.00 3.36
967 1044 3.441290 CCCCGCTTCGTCTCGTCT 61.441 66.667 0.00 0.00 0.00 4.18
988 1072 4.222847 GACCATCTCCGTCCGCCC 62.223 72.222 0.00 0.00 0.00 6.13
989 1073 4.570663 CGACCATCTCCGTCCGCC 62.571 72.222 0.00 0.00 0.00 6.13
1180 1264 2.608016 CGAGGGGCAAGAAAAGAAAAGC 60.608 50.000 0.00 0.00 0.00 3.51
1206 1293 1.778334 CATCGCCATTAATCGACCGA 58.222 50.000 1.75 0.00 37.55 4.69
1207 1294 0.163788 GCATCGCCATTAATCGACCG 59.836 55.000 1.75 0.00 37.55 4.79
1208 1295 1.512926 AGCATCGCCATTAATCGACC 58.487 50.000 1.75 0.00 37.55 4.79
1209 1296 2.802816 AGAAGCATCGCCATTAATCGAC 59.197 45.455 1.75 0.00 37.55 4.20
1221 1308 1.511850 TGACACACCAAGAAGCATCG 58.488 50.000 0.00 0.00 0.00 3.84
1239 1326 2.511600 GTCGCCGACCCCTGATTG 60.512 66.667 5.81 0.00 0.00 2.67
1959 2046 2.044551 CCTTTGAGCTGGAGGGCC 60.045 66.667 0.00 0.00 0.00 5.80
2088 2175 0.806102 CCTGGACACGTAATCGCCTG 60.806 60.000 0.00 0.00 41.18 4.85
2236 2323 0.306533 GCGTTGTTCGGCTTCTTGAA 59.693 50.000 0.00 0.00 40.26 2.69
2327 2414 1.437986 CCGTCCGAGAAGATGGTCC 59.562 63.158 0.00 0.00 38.03 4.46
2355 2442 0.949588 CACTGGCACTGACAGAGCTG 60.950 60.000 19.38 17.05 42.14 4.24
2388 2475 2.252072 TTACCTCCATGTCCCAGCGC 62.252 60.000 0.00 0.00 0.00 5.92
2440 2529 0.388649 ACGTTGCACGATGTCCTCTC 60.389 55.000 14.18 0.00 46.05 3.20
2468 2561 1.067635 GCTGCAAAAATGGACGGACAT 60.068 47.619 0.00 0.00 0.00 3.06
2473 2566 2.088178 GCCGCTGCAAAAATGGACG 61.088 57.895 0.00 0.00 37.47 4.79
3062 3166 3.620785 GATCATCTCCGGCCGCCT 61.621 66.667 22.85 0.00 0.00 5.52
3072 3176 4.543590 AGTTTGGTCGTTCAGATCATCT 57.456 40.909 0.00 0.00 40.16 2.90
3075 3179 4.279922 TCACTAGTTTGGTCGTTCAGATCA 59.720 41.667 0.00 0.00 38.41 2.92
3160 3264 3.260483 CTCGATCTGCAGCACGGC 61.260 66.667 23.92 6.74 0.00 5.68
3263 3367 1.905215 AGTGGTGGAGTGATCAGAAGG 59.095 52.381 0.00 0.00 0.00 3.46
3274 3378 1.866015 TAGACATGGGAGTGGTGGAG 58.134 55.000 0.00 0.00 0.00 3.86
3278 3382 2.845659 TGGATTAGACATGGGAGTGGT 58.154 47.619 0.00 0.00 0.00 4.16
3303 3414 1.998315 CTCTGCTCTGATCGTGGTTTG 59.002 52.381 0.00 0.00 0.00 2.93
3374 5611 9.577222 AGTACAAGAGTAAGAACTAAGAAGACT 57.423 33.333 0.00 0.00 35.56 3.24
3375 5612 9.830294 GAGTACAAGAGTAAGAACTAAGAAGAC 57.170 37.037 0.00 0.00 35.56 3.01
3381 5618 7.468496 AGGAGGAGTACAAGAGTAAGAACTAA 58.532 38.462 0.00 0.00 35.56 2.24
3383 5620 5.894653 AGGAGGAGTACAAGAGTAAGAACT 58.105 41.667 0.00 0.00 39.21 3.01
3384 5621 5.125900 GGAGGAGGAGTACAAGAGTAAGAAC 59.874 48.000 0.00 0.00 30.67 3.01
3390 5627 3.335484 AGAAGGAGGAGGAGTACAAGAGT 59.665 47.826 0.00 0.00 0.00 3.24
3434 5686 6.607735 CTACTCCTAGCAACAGTAGTACTC 57.392 45.833 0.00 0.00 36.41 2.59
3439 5691 8.068977 CGTAATTACTACTCCTAGCAACAGTAG 58.931 40.741 13.56 11.80 43.61 2.57
3440 5692 7.012704 CCGTAATTACTACTCCTAGCAACAGTA 59.987 40.741 13.56 0.00 0.00 2.74
3441 5693 6.183360 CCGTAATTACTACTCCTAGCAACAGT 60.183 42.308 13.56 0.00 0.00 3.55
3442 5694 6.207213 CCGTAATTACTACTCCTAGCAACAG 58.793 44.000 13.56 0.00 0.00 3.16
3443 5695 5.450965 GCCGTAATTACTACTCCTAGCAACA 60.451 44.000 13.56 0.00 0.00 3.33
3444 5696 4.981054 GCCGTAATTACTACTCCTAGCAAC 59.019 45.833 13.56 0.00 0.00 4.17
3445 5697 4.261322 CGCCGTAATTACTACTCCTAGCAA 60.261 45.833 13.56 0.00 0.00 3.91
3448 5700 5.180868 ACATCGCCGTAATTACTACTCCTAG 59.819 44.000 13.56 0.00 0.00 3.02
3450 5702 3.887716 ACATCGCCGTAATTACTACTCCT 59.112 43.478 13.56 0.00 0.00 3.69
3451 5703 3.979495 CACATCGCCGTAATTACTACTCC 59.021 47.826 13.56 0.00 0.00 3.85
3455 5707 3.620761 CGTCACATCGCCGTAATTACTA 58.379 45.455 13.56 0.00 0.00 1.82
3477 5729 1.210155 GGGCTTACAAACGCAGCAG 59.790 57.895 0.00 0.00 35.05 4.24
3478 5730 1.228124 AGGGCTTACAAACGCAGCA 60.228 52.632 0.00 0.00 35.05 4.41
3479 5731 1.502190 GAGGGCTTACAAACGCAGC 59.498 57.895 0.00 0.00 0.00 5.25
3480 5732 1.305930 GGGAGGGCTTACAAACGCAG 61.306 60.000 0.00 0.00 0.00 5.18
3481 5733 1.302993 GGGAGGGCTTACAAACGCA 60.303 57.895 0.00 0.00 0.00 5.24
3482 5734 0.891904 TTGGGAGGGCTTACAAACGC 60.892 55.000 0.00 0.00 0.00 4.84
3483 5735 1.472480 CATTGGGAGGGCTTACAAACG 59.528 52.381 0.00 0.00 0.00 3.60
3484 5736 2.802719 TCATTGGGAGGGCTTACAAAC 58.197 47.619 0.00 0.00 0.00 2.93
3485 5737 3.534357 TTCATTGGGAGGGCTTACAAA 57.466 42.857 0.00 0.00 0.00 2.83
3486 5738 3.011144 TCATTCATTGGGAGGGCTTACAA 59.989 43.478 0.00 0.00 0.00 2.41
3496 5748 4.639078 TTCACTCACTCATTCATTGGGA 57.361 40.909 0.00 0.00 0.00 4.37
3497 5749 4.945543 TCATTCACTCACTCATTCATTGGG 59.054 41.667 0.00 0.00 0.00 4.12
3541 5793 1.514678 GCAATAATGCGATGGCGGGA 61.515 55.000 0.00 0.00 43.83 5.14
3561 5814 4.086457 CCAAAGGAGGCCTAAGCTTAAAA 58.914 43.478 4.42 0.00 39.73 1.52
3562 5815 3.075432 ACCAAAGGAGGCCTAAGCTTAAA 59.925 43.478 4.42 0.00 39.73 1.52
3563 5816 2.647802 ACCAAAGGAGGCCTAAGCTTAA 59.352 45.455 4.42 0.00 39.73 1.85
3564 5817 2.275466 ACCAAAGGAGGCCTAAGCTTA 58.725 47.619 4.42 5.94 39.73 3.09
3565 5818 1.076438 ACCAAAGGAGGCCTAAGCTT 58.924 50.000 4.42 3.48 39.73 3.74
3566 5819 1.076438 AACCAAAGGAGGCCTAAGCT 58.924 50.000 4.42 0.00 39.73 3.74
3567 5820 1.924731 AAACCAAAGGAGGCCTAAGC 58.075 50.000 4.42 0.00 31.13 3.09
3568 5821 4.518249 CTCTAAACCAAAGGAGGCCTAAG 58.482 47.826 4.42 0.00 31.13 2.18
3569 5822 3.265995 CCTCTAAACCAAAGGAGGCCTAA 59.734 47.826 4.42 0.00 38.82 2.69
3570 5823 2.844348 CCTCTAAACCAAAGGAGGCCTA 59.156 50.000 4.42 0.00 38.82 3.93
3571 5824 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
3572 5825 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
3573 5826 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
3574 5827 6.010219 TGAATTTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
3575 5828 7.709149 ATGAATTTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
3576 5829 9.243105 CTTATGAATTTCCTCTAAACCAAAGGA 57.757 33.333 0.00 0.00 37.42 3.36
3577 5830 9.243105 TCTTATGAATTTCCTCTAAACCAAAGG 57.757 33.333 0.00 0.00 0.00 3.11
3634 5887 9.231297 CCTATGAACAAAGGACTCTAAATGAAA 57.769 33.333 0.00 0.00 34.58 2.69
3635 5888 8.602424 TCCTATGAACAAAGGACTCTAAATGAA 58.398 33.333 0.00 0.00 36.97 2.57
3636 5889 8.146053 TCCTATGAACAAAGGACTCTAAATGA 57.854 34.615 0.00 0.00 36.97 2.57
3637 5890 8.792830 TTCCTATGAACAAAGGACTCTAAATG 57.207 34.615 0.00 0.00 41.63 2.32
3638 5891 9.401058 CATTCCTATGAACAAAGGACTCTAAAT 57.599 33.333 0.00 0.00 41.63 1.40
3639 5892 7.829211 CCATTCCTATGAACAAAGGACTCTAAA 59.171 37.037 0.00 0.00 41.63 1.85
3640 5893 7.182026 TCCATTCCTATGAACAAAGGACTCTAA 59.818 37.037 0.00 0.00 41.63 2.10
3641 5894 6.672218 TCCATTCCTATGAACAAAGGACTCTA 59.328 38.462 0.00 0.00 41.63 2.43
3642 5895 5.488919 TCCATTCCTATGAACAAAGGACTCT 59.511 40.000 0.00 0.00 41.63 3.24
3643 5896 5.745227 TCCATTCCTATGAACAAAGGACTC 58.255 41.667 0.00 0.00 41.63 3.36
3644 5897 5.779241 TCCATTCCTATGAACAAAGGACT 57.221 39.130 0.00 0.00 41.63 3.85
3645 5898 7.032377 GAATCCATTCCTATGAACAAAGGAC 57.968 40.000 0.00 0.00 41.63 3.85
3683 5936 4.503714 TGTGGAGGATAGAAACCAATCC 57.496 45.455 0.00 0.00 41.77 3.01
3684 5937 6.603201 TGAAATGTGGAGGATAGAAACCAATC 59.397 38.462 0.00 0.00 34.11 2.67
3685 5938 6.493166 TGAAATGTGGAGGATAGAAACCAAT 58.507 36.000 0.00 0.00 34.11 3.16
3686 5939 5.886609 TGAAATGTGGAGGATAGAAACCAA 58.113 37.500 0.00 0.00 34.11 3.67
3687 5940 5.512942 TGAAATGTGGAGGATAGAAACCA 57.487 39.130 0.00 0.00 0.00 3.67
3688 5941 7.509546 TCTATGAAATGTGGAGGATAGAAACC 58.490 38.462 0.00 0.00 0.00 3.27
3689 5942 8.964476 TTCTATGAAATGTGGAGGATAGAAAC 57.036 34.615 0.00 0.00 32.24 2.78
3690 5943 9.973661 TTTTCTATGAAATGTGGAGGATAGAAA 57.026 29.630 0.00 0.00 39.16 2.52
3691 5944 9.973661 TTTTTCTATGAAATGTGGAGGATAGAA 57.026 29.630 0.00 0.00 32.95 2.10
3720 5973 8.712228 AATTCCATTGAGTCTAGGTTCTTTTT 57.288 30.769 0.00 0.00 0.00 1.94
3721 5974 8.712228 AAATTCCATTGAGTCTAGGTTCTTTT 57.288 30.769 0.00 0.00 0.00 2.27
3722 5975 8.712228 AAAATTCCATTGAGTCTAGGTTCTTT 57.288 30.769 0.00 0.00 0.00 2.52
3723 5976 8.712228 AAAAATTCCATTGAGTCTAGGTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
3756 6009 9.699410 AGGAAACAAGATATCATTTGGTTGATA 57.301 29.630 11.54 0.00 41.52 2.15
3757 6010 8.599624 AGGAAACAAGATATCATTTGGTTGAT 57.400 30.769 11.54 0.00 34.55 2.57
3758 6011 9.699410 ATAGGAAACAAGATATCATTTGGTTGA 57.301 29.630 11.54 0.37 34.55 3.18
3761 6014 9.136323 GGAATAGGAAACAAGATATCATTTGGT 57.864 33.333 5.32 0.00 0.00 3.67
3762 6015 9.359653 AGGAATAGGAAACAAGATATCATTTGG 57.640 33.333 5.32 0.00 0.00 3.28
3802 6055 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
3803 6056 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
3804 6057 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
3805 6058 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
3806 6059 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
3807 6060 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
3808 6061 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
3809 6062 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
3810 6063 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
3811 6064 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
3812 6065 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
3813 6066 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3815 6068 8.432805 GGAATAGGAATCTTGTAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3816 6069 8.435982 AGGAATAGGAATCTTGTAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
3817 6070 8.337118 AGGAATAGGAATCTTGTAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
3820 6073 9.447279 TCATAGGAATAGGAATCTTGTAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
3821 6074 9.621239 ATCATAGGAATAGGAATCTTGTAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3832 6085 9.621239 AGGACAGAATTATCATAGGAATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3839 6092 8.816894 GGTTCATAGGACAGAATTATCATAGGA 58.183 37.037 0.00 0.00 0.00 2.94
3840 6093 8.597167 TGGTTCATAGGACAGAATTATCATAGG 58.403 37.037 0.00 0.00 0.00 2.57
3843 6096 9.699410 TTTTGGTTCATAGGACAGAATTATCAT 57.301 29.630 0.00 0.00 0.00 2.45
3844 6097 9.527157 TTTTTGGTTCATAGGACAGAATTATCA 57.473 29.630 0.00 0.00 0.00 2.15
3867 6120 7.885922 GGAGGAAAGAAGATCTAAGGACTTTTT 59.114 37.037 0.00 0.00 0.00 1.94
3868 6121 7.398829 GGAGGAAAGAAGATCTAAGGACTTTT 58.601 38.462 0.00 0.00 0.00 2.27
3869 6122 6.069905 GGGAGGAAAGAAGATCTAAGGACTTT 60.070 42.308 0.00 3.86 0.00 2.66
3870 6123 5.427157 GGGAGGAAAGAAGATCTAAGGACTT 59.573 44.000 0.00 0.00 0.00 3.01
3871 6124 4.966168 GGGAGGAAAGAAGATCTAAGGACT 59.034 45.833 0.00 0.00 0.00 3.85
3872 6125 4.717280 TGGGAGGAAAGAAGATCTAAGGAC 59.283 45.833 0.00 0.00 0.00 3.85
3873 6126 4.960332 TGGGAGGAAAGAAGATCTAAGGA 58.040 43.478 0.00 0.00 0.00 3.36
3874 6127 5.131809 ACATGGGAGGAAAGAAGATCTAAGG 59.868 44.000 0.00 0.00 0.00 2.69
3875 6128 6.054295 CACATGGGAGGAAAGAAGATCTAAG 58.946 44.000 0.00 0.00 0.00 2.18
3876 6129 5.630069 GCACATGGGAGGAAAGAAGATCTAA 60.630 44.000 0.00 0.00 0.00 2.10
3890 6143 3.129502 CCACGCAGCACATGGGAG 61.130 66.667 0.00 0.00 44.43 4.30
3904 6161 4.501714 CATGCCATGCCACGCCAC 62.502 66.667 0.00 0.00 0.00 5.01
3936 6193 4.811206 TGGTACACCACATGCACC 57.189 55.556 0.00 0.00 44.30 5.01
3987 6244 2.088763 ATGTGCGCGACGAGTCAAG 61.089 57.895 12.10 0.00 0.00 3.02
4009 6266 2.138596 AACAGTGGCAAAATGAAGCG 57.861 45.000 0.00 0.00 0.00 4.68
4090 6385 4.584029 ATGAATACGAAACGCACTTGAG 57.416 40.909 0.00 0.00 0.00 3.02
4104 6399 6.371809 TGACGGCCTCAAAATAATGAATAC 57.628 37.500 0.00 0.00 0.00 1.89
4143 6438 4.745125 CCATACACAGTAGGATAGCGTTTG 59.255 45.833 0.00 0.00 0.00 2.93
4199 6496 0.249676 AGACAGTGGAGAGCATGCAG 59.750 55.000 21.98 1.43 0.00 4.41
4211 6508 2.099756 TGTGAGTGTGTGAGAGACAGTG 59.900 50.000 0.00 0.00 34.28 3.66
4212 6509 2.379005 TGTGAGTGTGTGAGAGACAGT 58.621 47.619 0.00 0.00 34.28 3.55
4215 6512 3.650070 TCATGTGAGTGTGTGAGAGAC 57.350 47.619 0.00 0.00 0.00 3.36
4218 6515 4.879197 AGAATCATGTGAGTGTGTGAGA 57.121 40.909 0.00 0.00 0.00 3.27
4220 6517 4.707105 ACAAGAATCATGTGAGTGTGTGA 58.293 39.130 0.00 0.00 0.00 3.58
4230 6527 6.765036 GGTCATCTGATACACAAGAATCATGT 59.235 38.462 0.00 0.00 31.95 3.21
4234 6531 5.923204 AGGGTCATCTGATACACAAGAATC 58.077 41.667 0.00 0.00 0.00 2.52
4246 6543 1.377202 GGCGCAAAGGGTCATCTGA 60.377 57.895 10.83 0.00 0.00 3.27
4247 6544 2.753966 CGGCGCAAAGGGTCATCTG 61.754 63.158 10.83 0.00 0.00 2.90
4248 6545 2.436646 CGGCGCAAAGGGTCATCT 60.437 61.111 10.83 0.00 0.00 2.90
4249 6546 3.508840 CCGGCGCAAAGGGTCATC 61.509 66.667 10.83 0.00 0.00 2.92
4250 6547 3.344137 ATCCGGCGCAAAGGGTCAT 62.344 57.895 10.83 0.00 0.00 3.06
4251 6548 4.028490 ATCCGGCGCAAAGGGTCA 62.028 61.111 10.83 0.00 0.00 4.02
4252 6549 3.508840 CATCCGGCGCAAAGGGTC 61.509 66.667 10.83 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.