Multiple sequence alignment - TraesCS7A01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G455300 chr7A 100.000 4894 0 0 1 4894 651196815 651201708 0.000000e+00 9038.0
1 TraesCS7A01G455300 chr7D 89.848 3960 188 79 14 3865 565196729 565200582 0.000000e+00 4889.0
2 TraesCS7A01G455300 chr7D 90.239 461 28 11 4239 4694 565200972 565201420 1.960000e-163 586.0
3 TraesCS7A01G455300 chr7B 92.597 3323 149 50 522 3794 615374509 615377784 0.000000e+00 4684.0
4 TraesCS7A01G455300 chr7B 82.077 982 93 41 3913 4858 615378204 615379138 0.000000e+00 761.0
5 TraesCS7A01G455300 chr7B 74.494 247 41 8 231 455 74108111 74108357 2.430000e-13 87.9
6 TraesCS7A01G455300 chr1A 85.484 62 8 1 231 291 591977242 591977181 4.090000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G455300 chr7A 651196815 651201708 4893 False 9038.0 9038 100.0000 1 4894 1 chr7A.!!$F1 4893
1 TraesCS7A01G455300 chr7D 565196729 565201420 4691 False 2737.5 4889 90.0435 14 4694 2 chr7D.!!$F1 4680
2 TraesCS7A01G455300 chr7B 615374509 615379138 4629 False 2722.5 4684 87.3370 522 4858 2 chr7B.!!$F2 4336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 886 0.039326 ACCAGTGGCGTACTACTCCT 59.961 55.0 9.78 0.00 37.60 3.69 F
840 891 0.463295 TGGCGTACTACTCCTCCTCG 60.463 60.0 0.00 0.00 0.00 4.63 F
841 892 0.463474 GGCGTACTACTCCTCCTCGT 60.463 60.0 0.00 0.00 0.00 4.18 F
1063 1136 0.740737 AGGTACGTACATACACGGCC 59.259 55.0 26.02 6.51 46.12 6.13 F
1095 1168 0.747255 ATGTCATTCCTCGTCCTCCG 59.253 55.0 0.00 0.00 38.13 4.63 F
2910 3006 0.394352 AGATCCAATTTTCGGCGCCT 60.394 50.0 26.68 0.86 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2492 0.185901 TGACTTGCCCAAAGGAGCTT 59.814 50.000 0.00 0.00 40.51 3.74 R
2776 2872 0.645355 CGTGTCCAAATCATCGGTCG 59.355 55.000 0.00 0.00 0.00 4.79 R
2830 2926 1.555075 GTTGACCCTGGCTCACTGATA 59.445 52.381 0.00 0.00 0.00 2.15 R
2910 3006 1.289694 CGAAAATTGCTGGGCTGCA 59.710 52.632 0.50 1.95 41.65 4.41 R
2932 3029 2.181525 CCGCCGCCAGAAATTTGG 59.818 61.111 0.00 0.00 41.35 3.28 R
4862 5329 0.103208 ATCCGAGATTGACTGTCGCC 59.897 55.000 2.98 0.00 39.21 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.803082 CGCAGTGGAATGCCGTGG 61.803 66.667 0.00 0.00 43.49 4.94
18 19 2.672996 GCAGTGGAATGCCGTGGT 60.673 61.111 0.00 0.00 40.43 4.16
19 20 2.981560 GCAGTGGAATGCCGTGGTG 61.982 63.158 0.00 0.00 40.43 4.17
20 21 2.034066 AGTGGAATGCCGTGGTGG 59.966 61.111 0.00 0.00 42.50 4.61
21 22 2.282180 GTGGAATGCCGTGGTGGT 60.282 61.111 0.00 0.00 41.21 4.16
22 23 1.901464 GTGGAATGCCGTGGTGGTT 60.901 57.895 0.00 0.00 41.21 3.67
23 24 1.602323 TGGAATGCCGTGGTGGTTC 60.602 57.895 0.00 0.00 41.21 3.62
24 25 2.686816 GGAATGCCGTGGTGGTTCG 61.687 63.158 0.00 0.00 41.21 3.95
41 42 2.362802 CGGACGCCGTAAAACTACC 58.637 57.895 9.69 0.00 42.73 3.18
44 45 1.633561 GACGCCGTAAAACTACCTCC 58.366 55.000 0.00 0.00 0.00 4.30
47 48 1.366679 GCCGTAAAACTACCTCCAGC 58.633 55.000 0.00 0.00 0.00 4.85
55 56 1.153549 CTACCTCCAGCTTGCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
56 57 1.888436 CTACCTCCAGCTTGCGTCCA 61.888 60.000 0.00 0.00 0.00 4.02
57 58 1.888436 TACCTCCAGCTTGCGTCCAG 61.888 60.000 0.00 0.00 0.00 3.86
60 61 1.572085 CTCCAGCTTGCGTCCAGTTG 61.572 60.000 0.00 0.00 0.00 3.16
63 64 4.389576 GCTTGCGTCCAGTTGGCG 62.390 66.667 9.58 9.58 37.63 5.69
64 65 2.664851 CTTGCGTCCAGTTGGCGA 60.665 61.111 15.68 2.76 37.05 5.54
67 68 1.169661 TTGCGTCCAGTTGGCGAAAT 61.170 50.000 15.68 0.00 37.05 2.17
85 86 0.250124 ATTTCGGACAAGTGGACGCA 60.250 50.000 0.00 0.00 0.00 5.24
90 91 1.639298 GGACAAGTGGACGCATCTGC 61.639 60.000 0.00 0.00 37.78 4.26
104 105 4.458951 GCATCTGCGGACAAATACTTAG 57.541 45.455 0.00 0.00 0.00 2.18
105 106 4.119862 GCATCTGCGGACAAATACTTAGA 58.880 43.478 0.00 0.00 0.00 2.10
109 110 4.404394 TCTGCGGACAAATACTTAGATGGA 59.596 41.667 0.00 0.00 0.00 3.41
130 131 5.888724 TGGAAAACTACATCCAAACAACTCA 59.111 36.000 0.00 0.00 42.61 3.41
133 134 7.404671 AAAACTACATCCAAACAACTCAGTT 57.595 32.000 0.00 0.00 0.00 3.16
136 137 3.804036 ACATCCAAACAACTCAGTTCGA 58.196 40.909 0.00 0.00 0.00 3.71
142 143 5.235616 TCCAAACAACTCAGTTCGAACATAC 59.764 40.000 28.78 3.75 0.00 2.39
147 148 0.457166 TCAGTTCGAACATACGCGGG 60.457 55.000 28.78 1.38 0.00 6.13
148 149 1.153706 AGTTCGAACATACGCGGGG 60.154 57.895 28.78 0.94 0.00 5.73
149 150 1.446618 GTTCGAACATACGCGGGGT 60.447 57.895 23.12 1.71 0.00 4.95
153 154 0.179210 CGAACATACGCGGGGTTTTG 60.179 55.000 12.47 4.78 0.00 2.44
154 155 0.455464 GAACATACGCGGGGTTTTGC 60.455 55.000 12.47 0.00 0.00 3.68
172 181 1.819632 CGGGTGCAGATGCCCTTAC 60.820 63.158 8.38 0.00 42.67 2.34
186 195 6.440965 AGATGCCCTTACTACTTGTTCTAGTT 59.559 38.462 0.00 0.00 0.00 2.24
206 215 3.904800 TCTATGATCCGGTCTTTGCAA 57.095 42.857 0.00 0.00 0.00 4.08
207 216 4.422073 TCTATGATCCGGTCTTTGCAAT 57.578 40.909 0.00 0.00 0.00 3.56
208 217 4.780815 TCTATGATCCGGTCTTTGCAATT 58.219 39.130 0.00 0.00 0.00 2.32
209 218 5.192927 TCTATGATCCGGTCTTTGCAATTT 58.807 37.500 0.00 0.00 0.00 1.82
210 219 4.806640 ATGATCCGGTCTTTGCAATTTT 57.193 36.364 0.00 0.00 0.00 1.82
211 220 5.913137 ATGATCCGGTCTTTGCAATTTTA 57.087 34.783 0.00 0.00 0.00 1.52
212 221 5.309323 TGATCCGGTCTTTGCAATTTTAG 57.691 39.130 0.00 0.00 0.00 1.85
213 222 3.569250 TCCGGTCTTTGCAATTTTAGC 57.431 42.857 0.00 0.00 0.00 3.09
214 223 3.153919 TCCGGTCTTTGCAATTTTAGCT 58.846 40.909 0.00 0.00 0.00 3.32
215 224 3.572255 TCCGGTCTTTGCAATTTTAGCTT 59.428 39.130 0.00 0.00 0.00 3.74
216 225 4.038642 TCCGGTCTTTGCAATTTTAGCTTT 59.961 37.500 0.00 0.00 0.00 3.51
217 226 4.749598 CCGGTCTTTGCAATTTTAGCTTTT 59.250 37.500 0.00 0.00 0.00 2.27
218 227 5.333263 CCGGTCTTTGCAATTTTAGCTTTTG 60.333 40.000 0.00 0.00 0.00 2.44
229 238 2.038863 TAGCTTTTGACCTCCCTCCA 57.961 50.000 0.00 0.00 0.00 3.86
245 254 6.042666 CCTCCCTCCAAAGGTTTTTAATTTCA 59.957 38.462 0.00 0.00 41.59 2.69
246 255 7.256655 CCTCCCTCCAAAGGTTTTTAATTTCAT 60.257 37.037 0.00 0.00 41.59 2.57
276 285 8.764287 CAAAATAATTTCAGACCTCACCAAAAC 58.236 33.333 0.00 0.00 0.00 2.43
279 288 5.712152 ATTTCAGACCTCACCAAAACATC 57.288 39.130 0.00 0.00 0.00 3.06
289 299 5.119931 TCACCAAAACATCCGAATTTCAG 57.880 39.130 0.00 0.00 0.00 3.02
293 303 6.144402 CACCAAAACATCCGAATTTCAGAAAG 59.856 38.462 1.28 0.00 0.00 2.62
296 306 6.633500 AAACATCCGAATTTCAGAAAGTCA 57.367 33.333 20.36 5.23 35.35 3.41
298 308 6.002062 ACATCCGAATTTCAGAAAGTCAAC 57.998 37.500 20.36 0.00 35.35 3.18
390 409 2.279741 TGAATCTGGCTCGGAATTTCG 58.720 47.619 0.00 0.00 0.00 3.46
408 427 5.564048 TTTCGGGGTTACAAATATTTCGG 57.436 39.130 0.00 0.00 0.00 4.30
409 428 3.543665 TCGGGGTTACAAATATTTCGGG 58.456 45.455 0.00 0.00 0.00 5.14
417 436 0.634465 AAATATTTCGGGCCCCACCT 59.366 50.000 18.66 0.85 39.10 4.00
419 438 1.064825 ATATTTCGGGCCCCACCTAG 58.935 55.000 18.66 0.00 39.10 3.02
420 439 0.326808 TATTTCGGGCCCCACCTAGT 60.327 55.000 18.66 0.00 39.10 2.57
423 442 1.266867 TTCGGGCCCCACCTAGTTAC 61.267 60.000 18.66 0.00 39.10 2.50
437 456 6.685403 CCACCTAGTTACGCGAAATTTAATTG 59.315 38.462 15.93 0.00 0.00 2.32
438 457 6.685403 CACCTAGTTACGCGAAATTTAATTGG 59.315 38.462 15.93 6.90 0.00 3.16
439 458 6.594937 ACCTAGTTACGCGAAATTTAATTGGA 59.405 34.615 15.93 0.00 0.00 3.53
440 459 7.119553 ACCTAGTTACGCGAAATTTAATTGGAA 59.880 33.333 15.93 0.00 0.00 3.53
441 460 8.126700 CCTAGTTACGCGAAATTTAATTGGAAT 58.873 33.333 15.93 0.00 0.00 3.01
442 461 9.498307 CTAGTTACGCGAAATTTAATTGGAATT 57.502 29.630 15.93 0.00 0.00 2.17
443 462 8.751302 AGTTACGCGAAATTTAATTGGAATTT 57.249 26.923 15.93 11.75 38.89 1.82
444 463 9.198837 AGTTACGCGAAATTTAATTGGAATTTT 57.801 25.926 15.93 0.29 36.96 1.82
445 464 9.800299 GTTACGCGAAATTTAATTGGAATTTTT 57.200 25.926 15.93 0.00 36.96 1.94
489 508 2.746269 TGTGCGCGGGTCTTATTATAC 58.254 47.619 8.83 0.00 0.00 1.47
505 524 9.502091 TCTTATTATACGGCTATTTCATTGCTT 57.498 29.630 0.00 0.00 0.00 3.91
576 595 5.047092 ACCCAATTGGAGAAAGCTAATTGTG 60.047 40.000 26.60 5.42 42.00 3.33
592 611 4.577834 ATTGTGACCCTTTTAACAACGG 57.422 40.909 0.00 0.00 35.51 4.44
633 660 0.621571 CCTGGAGGGGAATGGAGTCA 60.622 60.000 0.00 0.00 0.00 3.41
637 664 0.179006 GAGGGGAATGGAGTCATGGC 60.179 60.000 0.00 0.00 33.18 4.40
781 832 4.552365 GCTCGCTAGCCATGCCCA 62.552 66.667 9.66 0.00 43.40 5.36
830 881 4.096833 CAGTACAATACCAGTGGCGTACTA 59.903 45.833 23.35 6.47 37.93 1.82
831 882 3.515330 ACAATACCAGTGGCGTACTAC 57.485 47.619 9.78 0.00 37.60 2.73
832 883 3.094572 ACAATACCAGTGGCGTACTACT 58.905 45.455 9.78 0.00 37.60 2.57
834 885 1.755179 TACCAGTGGCGTACTACTCC 58.245 55.000 9.78 0.00 37.60 3.85
835 886 0.039326 ACCAGTGGCGTACTACTCCT 59.961 55.000 9.78 0.00 37.60 3.69
837 888 0.739561 CAGTGGCGTACTACTCCTCC 59.260 60.000 0.00 0.00 37.60 4.30
838 889 0.624785 AGTGGCGTACTACTCCTCCT 59.375 55.000 0.00 0.00 38.04 3.69
840 891 0.463295 TGGCGTACTACTCCTCCTCG 60.463 60.000 0.00 0.00 0.00 4.63
841 892 0.463474 GGCGTACTACTCCTCCTCGT 60.463 60.000 0.00 0.00 0.00 4.18
843 894 1.580815 CGTACTACTCCTCCTCGTCC 58.419 60.000 0.00 0.00 0.00 4.79
846 897 2.513204 TACTCCTCCTCGTCCGCG 60.513 66.667 0.00 0.00 39.92 6.46
847 898 3.320879 TACTCCTCCTCGTCCGCGT 62.321 63.158 4.92 0.00 39.49 6.01
868 940 1.199097 CCGCATTAAAGGACACACACC 59.801 52.381 0.00 0.00 0.00 4.16
1013 1086 1.770294 GACACTCCTCACCTCCCTAG 58.230 60.000 0.00 0.00 0.00 3.02
1055 1128 5.046288 AGCTACTTCCTAGGTACGTACAT 57.954 43.478 26.02 22.06 30.99 2.29
1056 1129 6.179906 AGCTACTTCCTAGGTACGTACATA 57.820 41.667 26.02 21.99 30.99 2.29
1057 1130 5.994668 AGCTACTTCCTAGGTACGTACATAC 59.005 44.000 26.02 9.95 30.99 2.39
1058 1131 5.760253 GCTACTTCCTAGGTACGTACATACA 59.240 44.000 26.02 8.83 0.00 2.29
1059 1132 6.293135 GCTACTTCCTAGGTACGTACATACAC 60.293 46.154 26.02 9.22 0.00 2.90
1061 1134 3.466836 TCCTAGGTACGTACATACACGG 58.533 50.000 26.02 19.64 46.12 4.94
1062 1135 2.031682 CCTAGGTACGTACATACACGGC 60.032 54.545 26.02 7.10 46.12 5.68
1063 1136 0.740737 AGGTACGTACATACACGGCC 59.259 55.000 26.02 6.51 46.12 6.13
1095 1168 0.747255 ATGTCATTCCTCGTCCTCCG 59.253 55.000 0.00 0.00 38.13 4.63
1101 1174 3.217743 CCTCGTCCTCCGGTAGCC 61.218 72.222 0.00 0.00 37.11 3.93
1126 1199 2.049985 CGGGAGACATCGATCGGC 60.050 66.667 16.41 2.74 0.00 5.54
1128 1201 2.203771 GGGAGACATCGATCGGCCT 61.204 63.158 16.41 7.19 0.00 5.19
1136 1209 3.917760 CGATCGGCCTCCAGGGAC 61.918 72.222 7.38 0.00 40.58 4.46
1145 1218 4.715130 TCCAGGGACAGGGGTCGG 62.715 72.222 0.00 0.00 45.28 4.79
1153 1226 4.530857 CAGGGGTCGGGATCGTGC 62.531 72.222 0.00 0.00 37.69 5.34
1358 1436 1.082117 GCCCCTTCATGTACGTCGTG 61.082 60.000 8.47 0.00 34.61 4.35
1826 1904 3.068732 TCAAGGACGTGATGATGATCTCC 59.931 47.826 0.00 0.00 0.00 3.71
2201 2279 2.359169 GCACCTCATCCTCGACCCA 61.359 63.158 0.00 0.00 0.00 4.51
2311 2389 3.287867 CCTGCAGGTGATTAATCCACT 57.712 47.619 25.53 7.93 35.05 4.00
2327 2405 8.607441 TTAATCCACTCATTCCAATTCTATCG 57.393 34.615 0.00 0.00 0.00 2.92
2349 2436 7.987268 TCGTACTCTACATTTTGACATCATC 57.013 36.000 0.00 0.00 0.00 2.92
2366 2453 2.173519 CATCAACACTTGGGCCAGATT 58.826 47.619 6.23 0.00 0.00 2.40
2373 2460 5.914898 ACACTTGGGCCAGATTAATTAAC 57.085 39.130 6.23 0.00 0.00 2.01
2402 2489 6.813152 GCAAATTGCTTTACTACATGGTTGAT 59.187 34.615 11.19 0.00 40.96 2.57
2403 2490 7.201461 GCAAATTGCTTTACTACATGGTTGATG 60.201 37.037 11.19 0.00 40.96 3.07
2404 2491 4.963276 TGCTTTACTACATGGTTGATGC 57.037 40.909 0.00 0.00 35.15 3.91
2405 2492 4.331108 TGCTTTACTACATGGTTGATGCA 58.669 39.130 0.00 0.00 35.15 3.96
2408 2495 4.963276 TTACTACATGGTTGATGCAAGC 57.037 40.909 0.00 2.66 41.51 4.01
2409 2496 3.077484 ACTACATGGTTGATGCAAGCT 57.923 42.857 10.22 0.00 41.66 3.74
2410 2497 3.012518 ACTACATGGTTGATGCAAGCTC 58.987 45.455 10.22 0.00 41.66 4.09
2411 2498 1.180029 ACATGGTTGATGCAAGCTCC 58.820 50.000 10.22 0.00 41.66 4.70
2414 2501 1.999648 TGGTTGATGCAAGCTCCTTT 58.000 45.000 10.22 0.00 41.66 3.11
2416 2503 1.067354 GGTTGATGCAAGCTCCTTTGG 60.067 52.381 0.00 0.00 38.60 3.28
2417 2504 1.067354 GTTGATGCAAGCTCCTTTGGG 60.067 52.381 0.00 0.00 0.00 4.12
2418 2505 1.252904 TGATGCAAGCTCCTTTGGGC 61.253 55.000 0.00 0.00 0.00 5.36
2421 2515 1.291272 GCAAGCTCCTTTGGGCAAG 59.709 57.895 0.00 0.00 0.00 4.01
2439 2533 4.558860 GGCAAGTCAATTCTACGAAATTGC 59.441 41.667 13.86 0.00 43.31 3.56
2474 2568 4.613437 AGACATTTGGCATTACCCTTGAT 58.387 39.130 0.00 0.00 37.83 2.57
2526 2620 5.939296 TCAGCAACATGAACTGATAATCACA 59.061 36.000 0.00 0.00 35.58 3.58
2608 2702 1.282738 AGCATCACACCATCACCATCA 59.717 47.619 0.00 0.00 0.00 3.07
2624 2718 0.962489 ATCAGTCGATCGGTCCCATC 59.038 55.000 16.41 0.00 0.00 3.51
2715 2811 7.613551 AAGGATAGTTGACGTAGGGATTAAT 57.386 36.000 0.00 0.00 0.00 1.40
2761 2857 2.485479 CCACTCAAGTGTAGCTGGTGTT 60.485 50.000 9.19 0.00 44.21 3.32
2776 2872 4.614535 GCTGGTGTTCAAATGATCACTCAC 60.615 45.833 18.84 1.76 41.84 3.51
2819 2915 7.744715 ACGAAAACAGATATGAAAATGACGTTC 59.255 33.333 0.00 0.00 0.00 3.95
2830 2926 2.961526 ATGACGTTCGCTACCTCATT 57.038 45.000 0.00 0.00 31.14 2.57
2843 2939 3.834489 ACCTCATTATCAGTGAGCCAG 57.166 47.619 0.00 0.00 41.33 4.85
2874 2970 2.438800 AGCGACCCACAGAGTACTAT 57.561 50.000 0.00 0.00 0.00 2.12
2880 2976 5.451520 GCGACCCACAGAGTACTATTACATT 60.452 44.000 0.00 0.00 0.00 2.71
2910 3006 0.394352 AGATCCAATTTTCGGCGCCT 60.394 50.000 26.68 0.86 0.00 5.52
2926 3023 1.675219 CCTGCAGCCCAGCAATTTT 59.325 52.632 8.66 0.00 45.13 1.82
2928 3025 0.734942 CTGCAGCCCAGCAATTTTCG 60.735 55.000 0.00 0.00 45.13 3.46
2929 3026 1.446618 GCAGCCCAGCAATTTTCGG 60.447 57.895 0.00 0.00 0.00 4.30
2930 3027 1.966762 CAGCCCAGCAATTTTCGGT 59.033 52.632 0.00 0.00 0.00 4.69
2931 3028 0.388907 CAGCCCAGCAATTTTCGGTG 60.389 55.000 0.00 0.00 0.00 4.94
2932 3029 1.737735 GCCCAGCAATTTTCGGTGC 60.738 57.895 0.00 0.00 41.22 5.01
2933 3030 1.079888 CCCAGCAATTTTCGGTGCC 60.080 57.895 0.00 0.00 41.88 5.01
2934 3031 1.664873 CCAGCAATTTTCGGTGCCA 59.335 52.632 0.00 0.00 41.88 4.92
2935 3032 0.033228 CCAGCAATTTTCGGTGCCAA 59.967 50.000 0.00 0.00 41.88 4.52
2936 3033 1.539929 CCAGCAATTTTCGGTGCCAAA 60.540 47.619 0.00 0.00 41.88 3.28
2943 3047 2.810439 TTTCGGTGCCAAATTTCTGG 57.190 45.000 0.00 0.00 39.71 3.86
2970 3074 4.276460 GGCGTACGTGGCTAAATATTTTG 58.724 43.478 17.90 5.62 0.00 2.44
2974 3078 6.535811 CGTACGTGGCTAAATATTTTGTTGA 58.464 36.000 7.22 0.00 0.00 3.18
3463 3567 1.729881 GCATTGATTGCCTCCGTCC 59.270 57.895 0.00 0.00 46.15 4.79
3468 3572 2.933287 ATTGCCTCCGTCCACCCA 60.933 61.111 0.00 0.00 0.00 4.51
3519 3623 1.141019 CCACGTCACGGATAGGTGG 59.859 63.158 0.35 10.15 43.95 4.61
3614 3723 1.690283 CTGCTGCTCGTTGGACATCG 61.690 60.000 0.00 0.00 0.00 3.84
3629 3738 0.652465 CATCGTGATGCAATGCGACG 60.652 55.000 15.18 15.18 34.11 5.12
3653 3762 7.095355 ACGTCTCTTAAATTTTAGCGTCATGTT 60.095 33.333 0.00 0.00 0.00 2.71
3704 3821 2.223947 GCTCGATCCCCTTCTCTTCTTC 60.224 54.545 0.00 0.00 0.00 2.87
3705 3822 3.295973 CTCGATCCCCTTCTCTTCTTCT 58.704 50.000 0.00 0.00 0.00 2.85
3706 3823 3.704061 CTCGATCCCCTTCTCTTCTTCTT 59.296 47.826 0.00 0.00 0.00 2.52
3707 3824 4.097418 TCGATCCCCTTCTCTTCTTCTTT 58.903 43.478 0.00 0.00 0.00 2.52
3708 3825 4.160626 TCGATCCCCTTCTCTTCTTCTTTC 59.839 45.833 0.00 0.00 0.00 2.62
3709 3826 4.161377 CGATCCCCTTCTCTTCTTCTTTCT 59.839 45.833 0.00 0.00 0.00 2.52
3710 3827 5.337975 CGATCCCCTTCTCTTCTTCTTTCTT 60.338 44.000 0.00 0.00 0.00 2.52
3711 3828 5.491323 TCCCCTTCTCTTCTTCTTTCTTC 57.509 43.478 0.00 0.00 0.00 2.87
3712 3829 5.158889 TCCCCTTCTCTTCTTCTTTCTTCT 58.841 41.667 0.00 0.00 0.00 2.85
3713 3830 5.608860 TCCCCTTCTCTTCTTCTTTCTTCTT 59.391 40.000 0.00 0.00 0.00 2.52
3773 3893 2.092914 ACCTATAACCTGCTGCTGTTCC 60.093 50.000 10.56 0.00 0.00 3.62
3841 3972 3.105283 AGTACTAGGCGTTTTGGAGGAT 58.895 45.455 0.00 0.00 0.00 3.24
3851 3982 1.905839 TTTGGAGGATGGGCTCCATA 58.094 50.000 0.00 0.00 45.26 2.74
3867 3998 6.073327 GCTCCATAAAGCCTGTTATTTACC 57.927 41.667 0.00 0.00 36.22 2.85
3868 3999 5.009710 GCTCCATAAAGCCTGTTATTTACCC 59.990 44.000 0.00 0.00 36.22 3.69
3871 4046 6.954684 TCCATAAAGCCTGTTATTTACCCAAA 59.045 34.615 0.00 0.00 0.00 3.28
3903 4078 7.816945 ACACTTTCTGTTTCAAAACATTCTG 57.183 32.000 8.64 3.86 46.71 3.02
3904 4079 6.813152 ACACTTTCTGTTTCAAAACATTCTGG 59.187 34.615 8.64 0.00 46.71 3.86
3908 4083 9.403110 CTTTCTGTTTCAAAACATTCTGGATAG 57.597 33.333 8.64 4.14 46.71 2.08
3911 4086 9.130661 TCTGTTTCAAAACATTCTGGATAGAAA 57.869 29.630 8.64 0.00 46.71 2.52
3944 4375 1.459209 ACGATGTAATGTGTGTGCGTG 59.541 47.619 0.00 0.00 0.00 5.34
3946 4377 2.721495 CGATGTAATGTGTGTGCGTGTG 60.721 50.000 0.00 0.00 0.00 3.82
3947 4378 1.657822 TGTAATGTGTGTGCGTGTGT 58.342 45.000 0.00 0.00 0.00 3.72
3948 4379 2.822764 TGTAATGTGTGTGCGTGTGTA 58.177 42.857 0.00 0.00 0.00 2.90
3949 4380 3.394719 TGTAATGTGTGTGCGTGTGTAT 58.605 40.909 0.00 0.00 0.00 2.29
3950 4381 2.967459 AATGTGTGTGCGTGTGTATG 57.033 45.000 0.00 0.00 0.00 2.39
3951 4382 1.877637 ATGTGTGTGCGTGTGTATGT 58.122 45.000 0.00 0.00 0.00 2.29
3952 4383 0.933796 TGTGTGTGCGTGTGTATGTG 59.066 50.000 0.00 0.00 0.00 3.21
3953 4384 0.934496 GTGTGTGCGTGTGTATGTGT 59.066 50.000 0.00 0.00 0.00 3.72
3954 4385 0.933796 TGTGTGCGTGTGTATGTGTG 59.066 50.000 0.00 0.00 0.00 3.82
3955 4386 0.934496 GTGTGCGTGTGTATGTGTGT 59.066 50.000 0.00 0.00 0.00 3.72
3956 4387 2.128821 GTGTGCGTGTGTATGTGTGTA 58.871 47.619 0.00 0.00 0.00 2.90
3957 4388 2.540516 GTGTGCGTGTGTATGTGTGTAA 59.459 45.455 0.00 0.00 0.00 2.41
3961 4392 6.253942 GTGTGCGTGTGTATGTGTGTAATATA 59.746 38.462 0.00 0.00 0.00 0.86
3987 4418 6.257630 TCACGATGAAATATCTTGAATTGCGA 59.742 34.615 0.00 0.00 0.00 5.10
3990 4421 6.565435 CGATGAAATATCTTGAATTGCGAGCT 60.565 38.462 0.00 0.00 0.00 4.09
3991 4422 7.359514 CGATGAAATATCTTGAATTGCGAGCTA 60.360 37.037 0.00 0.00 0.00 3.32
4016 4447 4.405116 TTTTTGGTGCAGCTCTCATTTT 57.595 36.364 18.08 0.00 0.00 1.82
4017 4448 3.374220 TTTGGTGCAGCTCTCATTTTG 57.626 42.857 18.08 0.00 0.00 2.44
4018 4449 2.275134 TGGTGCAGCTCTCATTTTGA 57.725 45.000 18.08 0.00 0.00 2.69
4019 4450 2.799017 TGGTGCAGCTCTCATTTTGAT 58.201 42.857 18.08 0.00 0.00 2.57
4020 4451 2.490509 TGGTGCAGCTCTCATTTTGATG 59.509 45.455 18.08 0.00 0.00 3.07
4021 4452 2.490903 GGTGCAGCTCTCATTTTGATGT 59.509 45.455 9.07 0.00 0.00 3.06
4022 4453 3.691118 GGTGCAGCTCTCATTTTGATGTA 59.309 43.478 9.07 0.00 0.00 2.29
4029 4460 7.854916 GCAGCTCTCATTTTGATGTAGTATTTC 59.145 37.037 0.00 0.00 0.00 2.17
4049 4480 6.951062 TTTCATCCTGAAAATGTACACACA 57.049 33.333 0.00 0.00 42.72 3.72
4065 4496 8.942338 TGTACACACATGTAAATTATCTCTCC 57.058 34.615 0.00 0.00 42.99 3.71
4068 4499 6.049149 CACACATGTAAATTATCTCTCCGGT 58.951 40.000 0.00 0.00 0.00 5.28
4074 4505 8.712363 CATGTAAATTATCTCTCCGGTTGTATG 58.288 37.037 0.00 0.00 0.00 2.39
4078 4509 6.971726 ATTATCTCTCCGGTTGTATGTGTA 57.028 37.500 0.00 0.00 0.00 2.90
4079 4510 6.971726 TTATCTCTCCGGTTGTATGTGTAT 57.028 37.500 0.00 0.00 0.00 2.29
4082 4513 6.045072 TCTCTCCGGTTGTATGTGTATTTT 57.955 37.500 0.00 0.00 0.00 1.82
4165 4599 3.865745 GCTCGAGCTCTGTTTAGCATTTA 59.134 43.478 29.88 0.00 45.30 1.40
4169 4603 2.348666 AGCTCTGTTTAGCATTTACGCG 59.651 45.455 3.53 3.53 45.30 6.01
4177 4611 5.340138 TGTTTAGCATTTACGCGTTTTAAGC 59.660 36.000 20.78 15.87 36.85 3.09
4187 4621 3.057315 ACGCGTTTTAAGCTCCTACTACA 60.057 43.478 5.58 0.00 0.00 2.74
4191 4625 6.271566 GCGTTTTAAGCTCCTACTACAGTAT 58.728 40.000 0.00 0.00 0.00 2.12
4202 4636 3.895232 ACTACAGTATGAAGGCTGGTG 57.105 47.619 0.00 0.00 39.69 4.17
4204 4638 0.692476 ACAGTATGAAGGCTGGTGCA 59.308 50.000 0.00 0.00 39.69 4.57
4205 4639 1.073763 ACAGTATGAAGGCTGGTGCAA 59.926 47.619 0.00 0.00 39.69 4.08
4217 4651 1.966451 GGTGCAACAGAGTTCCGGG 60.966 63.158 0.00 0.00 39.98 5.73
4226 4660 1.079057 GAGTTCCGGGTCTGCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
4331 4780 0.403271 ATCAAGTCAGGGCTGCAAGT 59.597 50.000 0.50 0.00 35.30 3.16
4356 4814 4.072131 GTTTGGTCAGAGGTAGCAATTGA 58.928 43.478 10.34 0.00 34.59 2.57
4439 4899 2.030805 AGCCGACATTTGAGCTTTGAAC 60.031 45.455 0.00 0.00 29.27 3.18
4447 4907 5.987347 ACATTTGAGCTTTGAACCAAGAATG 59.013 36.000 0.00 0.00 0.00 2.67
4451 4911 4.828939 TGAGCTTTGAACCAAGAATGATGT 59.171 37.500 0.00 0.00 0.00 3.06
4453 4913 6.072508 TGAGCTTTGAACCAAGAATGATGTAC 60.073 38.462 0.00 0.00 0.00 2.90
4454 4914 6.006449 AGCTTTGAACCAAGAATGATGTACT 58.994 36.000 0.00 0.00 0.00 2.73
4455 4915 7.168219 AGCTTTGAACCAAGAATGATGTACTA 58.832 34.615 0.00 0.00 0.00 1.82
4456 4916 7.119846 AGCTTTGAACCAAGAATGATGTACTAC 59.880 37.037 0.00 0.00 0.00 2.73
4457 4917 6.961359 TTGAACCAAGAATGATGTACTACG 57.039 37.500 0.00 0.00 0.00 3.51
4458 4918 6.032956 TGAACCAAGAATGATGTACTACGT 57.967 37.500 0.00 0.00 0.00 3.57
4459 4919 6.460781 TGAACCAAGAATGATGTACTACGTT 58.539 36.000 0.00 0.00 0.00 3.99
4460 4920 6.367695 TGAACCAAGAATGATGTACTACGTTG 59.632 38.462 0.00 0.00 0.00 4.10
4461 4921 5.790593 ACCAAGAATGATGTACTACGTTGT 58.209 37.500 7.95 7.95 0.00 3.32
4462 4922 5.637810 ACCAAGAATGATGTACTACGTTGTG 59.362 40.000 13.03 0.00 0.00 3.33
4463 4923 5.063438 CCAAGAATGATGTACTACGTTGTGG 59.937 44.000 13.03 0.00 0.00 4.17
4464 4924 4.755411 AGAATGATGTACTACGTTGTGGG 58.245 43.478 13.03 0.00 0.00 4.61
4465 4925 4.464951 AGAATGATGTACTACGTTGTGGGA 59.535 41.667 13.03 0.00 0.00 4.37
4467 4927 4.182693 TGATGTACTACGTTGTGGGAAG 57.817 45.455 13.03 0.00 0.00 3.46
4468 4928 3.827876 TGATGTACTACGTTGTGGGAAGA 59.172 43.478 13.03 0.00 0.00 2.87
4469 4929 3.648339 TGTACTACGTTGTGGGAAGAC 57.352 47.619 13.03 2.45 0.00 3.01
4476 4936 1.726791 CGTTGTGGGAAGACGAAGATG 59.273 52.381 0.00 0.00 38.99 2.90
4580 5041 1.483424 GCGCGGTAGTGATCAGAAGC 61.483 60.000 8.83 0.00 0.00 3.86
4619 5083 3.290710 CAGTTAGGGATTGGGTTCCATG 58.709 50.000 0.00 0.00 37.53 3.66
4647 5111 4.788925 AGGCCTACATTGCTTGGTTATA 57.211 40.909 1.29 0.00 0.00 0.98
4648 5112 5.324832 AGGCCTACATTGCTTGGTTATAT 57.675 39.130 1.29 0.00 0.00 0.86
4694 5161 3.550437 ATGTTGCAAGGCTAGGTCTAG 57.450 47.619 0.00 0.85 36.29 2.43
4695 5162 2.257207 TGTTGCAAGGCTAGGTCTAGT 58.743 47.619 0.00 0.00 35.65 2.57
4696 5163 3.437213 TGTTGCAAGGCTAGGTCTAGTA 58.563 45.455 0.00 0.00 35.65 1.82
4697 5164 3.447586 TGTTGCAAGGCTAGGTCTAGTAG 59.552 47.826 0.00 0.00 35.65 2.57
4698 5165 2.667470 TGCAAGGCTAGGTCTAGTAGG 58.333 52.381 6.84 0.00 35.65 3.18
4699 5166 1.964933 GCAAGGCTAGGTCTAGTAGGG 59.035 57.143 6.84 0.00 35.65 3.53
4700 5167 2.690329 GCAAGGCTAGGTCTAGTAGGGT 60.690 54.545 6.84 0.00 35.65 4.34
4701 5168 3.224269 CAAGGCTAGGTCTAGTAGGGTC 58.776 54.545 6.84 0.00 35.65 4.46
4702 5169 1.782140 AGGCTAGGTCTAGTAGGGTCC 59.218 57.143 6.84 0.00 35.65 4.46
4703 5170 1.782140 GGCTAGGTCTAGTAGGGTCCT 59.218 57.143 6.84 11.89 35.65 3.85
4704 5171 2.177451 GGCTAGGTCTAGTAGGGTCCTT 59.823 54.545 12.27 0.00 35.65 3.36
4705 5172 3.373987 GGCTAGGTCTAGTAGGGTCCTTT 60.374 52.174 12.27 0.00 35.65 3.11
4706 5173 3.890756 GCTAGGTCTAGTAGGGTCCTTTC 59.109 52.174 12.27 4.70 35.65 2.62
4707 5174 4.630676 GCTAGGTCTAGTAGGGTCCTTTCA 60.631 50.000 12.27 0.00 35.65 2.69
4708 5175 4.628661 AGGTCTAGTAGGGTCCTTTCAT 57.371 45.455 0.00 0.00 0.00 2.57
4709 5176 4.290942 AGGTCTAGTAGGGTCCTTTCATG 58.709 47.826 0.00 0.00 0.00 3.07
4714 5181 3.385115 AGTAGGGTCCTTTCATGTAGGG 58.615 50.000 14.06 5.60 33.41 3.53
4735 5202 6.002653 GGGACACCTGTTTCTAATTAGGAT 57.997 41.667 12.54 0.00 34.42 3.24
4741 5208 4.209288 CCTGTTTCTAATTAGGATCACGCG 59.791 45.833 12.54 3.53 31.91 6.01
4763 5230 4.275196 CGTGCATGAATGAGATCCTTTCAT 59.725 41.667 0.00 14.27 45.16 2.57
4785 5252 0.039618 GAGGGGGCAAATCAGGACAA 59.960 55.000 0.00 0.00 0.00 3.18
4786 5253 0.251787 AGGGGGCAAATCAGGACAAC 60.252 55.000 0.00 0.00 0.00 3.32
4788 5255 1.560505 GGGGCAAATCAGGACAACAT 58.439 50.000 0.00 0.00 0.00 2.71
4791 5258 3.088532 GGGCAAATCAGGACAACATGTA 58.911 45.455 0.00 0.00 0.00 2.29
4842 5309 7.603297 AAATTTACACATTTGAGAAACGTCG 57.397 32.000 0.00 0.00 0.00 5.12
4843 5310 4.718858 TTACACATTTGAGAAACGTCGG 57.281 40.909 0.00 0.00 0.00 4.79
4846 5313 2.096417 CACATTTGAGAAACGTCGGACC 60.096 50.000 1.91 0.00 0.00 4.46
4858 5325 4.690184 ACGTCGGACCCATAAAATTTTC 57.310 40.909 6.72 0.00 0.00 2.29
4859 5326 4.073549 ACGTCGGACCCATAAAATTTTCA 58.926 39.130 6.72 0.00 0.00 2.69
4860 5327 4.703093 ACGTCGGACCCATAAAATTTTCAT 59.297 37.500 6.72 0.00 0.00 2.57
4861 5328 5.163693 ACGTCGGACCCATAAAATTTTCATC 60.164 40.000 6.72 0.00 0.00 2.92
4862 5329 5.270853 GTCGGACCCATAAAATTTTCATCG 58.729 41.667 6.72 4.02 0.00 3.84
4863 5330 4.336993 TCGGACCCATAAAATTTTCATCGG 59.663 41.667 6.72 5.80 0.00 4.18
4864 5331 4.368315 GGACCCATAAAATTTTCATCGGC 58.632 43.478 6.72 0.00 0.00 5.54
4865 5332 4.040445 ACCCATAAAATTTTCATCGGCG 57.960 40.909 6.72 0.00 0.00 6.46
4866 5333 3.697045 ACCCATAAAATTTTCATCGGCGA 59.303 39.130 13.87 13.87 0.00 5.54
4867 5334 4.041723 CCCATAAAATTTTCATCGGCGAC 58.958 43.478 13.76 0.00 0.00 5.19
4868 5335 4.439426 CCCATAAAATTTTCATCGGCGACA 60.439 41.667 13.76 0.00 0.00 4.35
4869 5336 4.734854 CCATAAAATTTTCATCGGCGACAG 59.265 41.667 13.76 8.50 0.00 3.51
4870 5337 3.915437 AAAATTTTCATCGGCGACAGT 57.085 38.095 13.76 0.00 0.00 3.55
4871 5338 3.471495 AAATTTTCATCGGCGACAGTC 57.529 42.857 13.76 0.00 0.00 3.51
4872 5339 2.093306 ATTTTCATCGGCGACAGTCA 57.907 45.000 13.76 0.00 0.00 3.41
4873 5340 1.872388 TTTTCATCGGCGACAGTCAA 58.128 45.000 13.76 3.29 0.00 3.18
4874 5341 2.093306 TTTCATCGGCGACAGTCAAT 57.907 45.000 13.76 0.00 0.00 2.57
4875 5342 1.640428 TTCATCGGCGACAGTCAATC 58.360 50.000 13.76 0.00 0.00 2.67
4876 5343 0.817654 TCATCGGCGACAGTCAATCT 59.182 50.000 13.76 0.00 0.00 2.40
4877 5344 1.202302 TCATCGGCGACAGTCAATCTC 60.202 52.381 13.76 0.00 0.00 2.75
4878 5345 0.248661 ATCGGCGACAGTCAATCTCG 60.249 55.000 13.76 0.00 0.00 4.04
4879 5346 1.874019 CGGCGACAGTCAATCTCGG 60.874 63.158 0.00 0.00 0.00 4.63
4880 5347 1.511305 GGCGACAGTCAATCTCGGA 59.489 57.895 0.41 0.00 0.00 4.55
4881 5348 0.103208 GGCGACAGTCAATCTCGGAT 59.897 55.000 0.41 0.00 0.00 4.18
4882 5349 1.203928 GCGACAGTCAATCTCGGATG 58.796 55.000 0.41 0.00 0.00 3.51
4883 5350 1.202302 GCGACAGTCAATCTCGGATGA 60.202 52.381 0.41 0.00 0.00 2.92
4884 5351 2.725490 CGACAGTCAATCTCGGATGAG 58.275 52.381 0.41 0.00 43.99 2.90
4885 5352 2.542618 CGACAGTCAATCTCGGATGAGG 60.543 54.545 0.41 0.00 42.79 3.86
4886 5353 1.137872 ACAGTCAATCTCGGATGAGGC 59.862 52.381 0.00 0.00 42.79 4.70
4887 5354 0.755686 AGTCAATCTCGGATGAGGCC 59.244 55.000 0.00 0.00 42.79 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.334946 CCACCACGGCATTCCACTG 61.335 63.158 0.00 0.00 0.00 3.66
3 4 2.034066 CCACCACGGCATTCCACT 59.966 61.111 0.00 0.00 0.00 4.00
5 6 1.602323 GAACCACCACGGCATTCCA 60.602 57.895 0.00 0.00 39.03 3.53
24 25 1.633561 GAGGTAGTTTTACGGCGTCC 58.366 55.000 19.21 10.06 0.00 4.79
25 26 1.067635 TGGAGGTAGTTTTACGGCGTC 60.068 52.381 19.21 0.93 0.00 5.19
26 27 0.968405 TGGAGGTAGTTTTACGGCGT 59.032 50.000 19.64 19.64 0.00 5.68
27 28 1.636988 CTGGAGGTAGTTTTACGGCG 58.363 55.000 4.80 4.80 0.00 6.46
28 29 1.066358 AGCTGGAGGTAGTTTTACGGC 60.066 52.381 0.00 0.00 0.00 5.68
32 33 2.038033 ACGCAAGCTGGAGGTAGTTTTA 59.962 45.455 0.00 0.00 45.62 1.52
36 37 1.592223 GACGCAAGCTGGAGGTAGT 59.408 57.895 0.00 0.00 45.62 2.73
39 40 3.241530 TGGACGCAAGCTGGAGGT 61.242 61.111 0.00 0.00 45.62 3.85
41 42 1.302033 AACTGGACGCAAGCTGGAG 60.302 57.895 0.00 0.00 45.62 3.86
44 45 2.949106 CCAACTGGACGCAAGCTG 59.051 61.111 0.00 0.00 45.62 4.24
47 48 1.781025 TTTCGCCAACTGGACGCAAG 61.781 55.000 0.00 0.00 37.39 4.01
63 64 2.664698 GCGTCCACTTGTCCGAAATTTC 60.665 50.000 8.20 8.20 0.00 2.17
64 65 1.265905 GCGTCCACTTGTCCGAAATTT 59.734 47.619 0.00 0.00 0.00 1.82
67 68 0.250124 ATGCGTCCACTTGTCCGAAA 60.250 50.000 0.00 0.00 0.00 3.46
71 72 1.639298 GCAGATGCGTCCACTTGTCC 61.639 60.000 1.23 0.00 0.00 4.02
85 86 5.070446 TCCATCTAAGTATTTGTCCGCAGAT 59.930 40.000 0.00 0.00 0.00 2.90
90 91 7.611213 AGTTTTCCATCTAAGTATTTGTCCG 57.389 36.000 0.00 0.00 0.00 4.79
100 101 8.335532 TGTTTGGATGTAGTTTTCCATCTAAG 57.664 34.615 0.00 0.00 41.52 2.18
101 102 8.573035 GTTGTTTGGATGTAGTTTTCCATCTAA 58.427 33.333 0.00 0.00 41.52 2.10
102 103 7.942341 AGTTGTTTGGATGTAGTTTTCCATCTA 59.058 33.333 0.00 0.00 41.52 1.98
103 104 6.777580 AGTTGTTTGGATGTAGTTTTCCATCT 59.222 34.615 0.00 0.00 41.52 2.90
104 105 6.981722 AGTTGTTTGGATGTAGTTTTCCATC 58.018 36.000 0.00 0.00 41.52 3.51
105 106 6.549364 TGAGTTGTTTGGATGTAGTTTTCCAT 59.451 34.615 0.00 0.00 41.52 3.41
109 110 7.404671 AACTGAGTTGTTTGGATGTAGTTTT 57.595 32.000 0.00 0.00 0.00 2.43
118 119 3.601435 TGTTCGAACTGAGTTGTTTGGA 58.399 40.909 27.32 0.97 33.38 3.53
121 122 4.318546 GCGTATGTTCGAACTGAGTTGTTT 60.319 41.667 27.32 5.47 0.00 2.83
122 123 3.183775 GCGTATGTTCGAACTGAGTTGTT 59.816 43.478 27.32 6.39 0.00 2.83
123 124 2.729882 GCGTATGTTCGAACTGAGTTGT 59.270 45.455 27.32 8.57 0.00 3.32
126 127 1.614385 CGCGTATGTTCGAACTGAGT 58.386 50.000 27.32 13.86 0.00 3.41
130 131 1.153706 CCCCGCGTATGTTCGAACT 60.154 57.895 27.32 15.81 0.00 3.01
133 134 0.320596 AAAACCCCGCGTATGTTCGA 60.321 50.000 4.92 0.00 0.00 3.71
136 137 1.582461 GCAAAACCCCGCGTATGTT 59.418 52.632 4.92 1.98 0.00 2.71
158 159 2.571653 ACAAGTAGTAAGGGCATCTGCA 59.428 45.455 4.33 0.00 44.36 4.41
159 160 3.268023 ACAAGTAGTAAGGGCATCTGC 57.732 47.619 0.00 0.00 41.14 4.26
161 162 5.958987 ACTAGAACAAGTAGTAAGGGCATCT 59.041 40.000 0.00 0.00 0.00 2.90
162 163 6.223351 ACTAGAACAAGTAGTAAGGGCATC 57.777 41.667 0.00 0.00 0.00 3.91
163 164 6.440965 AGAACTAGAACAAGTAGTAAGGGCAT 59.559 38.462 0.00 0.00 30.26 4.40
164 165 5.778750 AGAACTAGAACAAGTAGTAAGGGCA 59.221 40.000 0.00 0.00 30.26 5.36
165 166 6.283544 AGAACTAGAACAAGTAGTAAGGGC 57.716 41.667 0.00 0.00 30.26 5.19
166 167 9.186837 TCATAGAACTAGAACAAGTAGTAAGGG 57.813 37.037 0.00 0.00 30.26 3.95
172 181 7.013464 ACCGGATCATAGAACTAGAACAAGTAG 59.987 40.741 9.46 0.00 0.00 2.57
186 195 3.904800 TTGCAAAGACCGGATCATAGA 57.095 42.857 9.46 0.00 0.00 1.98
206 215 4.202673 TGGAGGGAGGTCAAAAGCTAAAAT 60.203 41.667 0.00 0.00 32.07 1.82
207 216 3.139397 TGGAGGGAGGTCAAAAGCTAAAA 59.861 43.478 0.00 0.00 32.07 1.52
208 217 2.714250 TGGAGGGAGGTCAAAAGCTAAA 59.286 45.455 0.00 0.00 32.07 1.85
209 218 2.344592 TGGAGGGAGGTCAAAAGCTAA 58.655 47.619 0.00 0.00 32.07 3.09
210 219 2.038863 TGGAGGGAGGTCAAAAGCTA 57.961 50.000 0.00 0.00 32.07 3.32
211 220 1.149101 TTGGAGGGAGGTCAAAAGCT 58.851 50.000 0.00 0.00 35.46 3.74
212 221 1.889170 CTTTGGAGGGAGGTCAAAAGC 59.111 52.381 0.00 0.00 32.05 3.51
213 222 2.519013 CCTTTGGAGGGAGGTCAAAAG 58.481 52.381 0.00 0.00 39.55 2.27
214 223 2.675658 CCTTTGGAGGGAGGTCAAAA 57.324 50.000 0.00 0.00 39.55 2.44
246 255 9.137459 TGGTGAGGTCTGAAATTATTTTGTTTA 57.863 29.630 0.00 0.00 0.00 2.01
255 264 6.208599 GGATGTTTTGGTGAGGTCTGAAATTA 59.791 38.462 0.00 0.00 0.00 1.40
261 270 1.806542 CGGATGTTTTGGTGAGGTCTG 59.193 52.381 0.00 0.00 0.00 3.51
262 271 1.697432 TCGGATGTTTTGGTGAGGTCT 59.303 47.619 0.00 0.00 0.00 3.85
269 278 5.782893 TTCTGAAATTCGGATGTTTTGGT 57.217 34.783 5.23 0.00 30.80 3.67
276 285 6.000891 TGTTGACTTTCTGAAATTCGGATG 57.999 37.500 5.23 4.82 30.80 3.51
279 288 8.970691 AAATATGTTGACTTTCTGAAATTCGG 57.029 30.769 13.56 0.00 0.00 4.30
355 374 8.767478 AGCCAGATTCAACATAATTTCAAAAG 57.233 30.769 0.00 0.00 0.00 2.27
363 382 4.422073 TCCGAGCCAGATTCAACATAAT 57.578 40.909 0.00 0.00 0.00 1.28
366 385 2.787473 TTCCGAGCCAGATTCAACAT 57.213 45.000 0.00 0.00 0.00 2.71
367 386 2.787473 ATTCCGAGCCAGATTCAACA 57.213 45.000 0.00 0.00 0.00 3.33
368 387 3.485877 CGAAATTCCGAGCCAGATTCAAC 60.486 47.826 0.00 0.00 0.00 3.18
390 409 2.363038 GGCCCGAAATATTTGTAACCCC 59.637 50.000 5.17 0.00 0.00 4.95
408 427 2.188731 GCGTAACTAGGTGGGGCC 59.811 66.667 0.00 0.00 37.58 5.80
409 428 2.202837 CGCGTAACTAGGTGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
417 436 9.843334 AAATTCCAATTAAATTTCGCGTAACTA 57.157 25.926 5.77 0.00 32.27 2.24
419 438 9.800299 AAAAATTCCAATTAAATTTCGCGTAAC 57.200 25.926 5.77 0.00 35.75 2.50
423 442 9.256715 GGTTAAAAATTCCAATTAAATTTCGCG 57.743 29.630 0.00 0.00 35.75 5.87
437 456 3.441101 AGGGAGCAGGGTTAAAAATTCC 58.559 45.455 0.00 0.00 0.00 3.01
438 457 3.447586 GGAGGGAGCAGGGTTAAAAATTC 59.552 47.826 0.00 0.00 0.00 2.17
439 458 3.181412 TGGAGGGAGCAGGGTTAAAAATT 60.181 43.478 0.00 0.00 0.00 1.82
440 459 2.381961 TGGAGGGAGCAGGGTTAAAAAT 59.618 45.455 0.00 0.00 0.00 1.82
441 460 1.783979 TGGAGGGAGCAGGGTTAAAAA 59.216 47.619 0.00 0.00 0.00 1.94
442 461 1.074889 GTGGAGGGAGCAGGGTTAAAA 59.925 52.381 0.00 0.00 0.00 1.52
443 462 0.696501 GTGGAGGGAGCAGGGTTAAA 59.303 55.000 0.00 0.00 0.00 1.52
444 463 0.474854 TGTGGAGGGAGCAGGGTTAA 60.475 55.000 0.00 0.00 0.00 2.01
445 464 0.253160 ATGTGGAGGGAGCAGGGTTA 60.253 55.000 0.00 0.00 0.00 2.85
489 508 4.130118 ACTCCTAAGCAATGAAATAGCCG 58.870 43.478 0.00 0.00 0.00 5.52
505 524 9.734984 CCTTTTTATTTCTGGTCTTAACTCCTA 57.265 33.333 0.00 0.00 0.00 2.94
592 611 2.973082 GGTGCACTGCCATTTCCC 59.027 61.111 17.98 0.00 0.00 3.97
619 638 1.649271 GGCCATGACTCCATTCCCCT 61.649 60.000 0.00 0.00 0.00 4.79
622 641 2.189499 GCGGCCATGACTCCATTCC 61.189 63.158 2.24 0.00 0.00 3.01
623 642 1.442526 CTGCGGCCATGACTCCATTC 61.443 60.000 2.24 0.00 0.00 2.67
778 829 3.458163 CAGCAAGCTGGCCATGGG 61.458 66.667 15.13 0.00 40.17 4.00
779 830 4.143333 GCAGCAAGCTGGCCATGG 62.143 66.667 22.20 7.63 43.77 3.66
830 881 4.719106 ACGCGGACGAGGAGGAGT 62.719 66.667 12.47 0.00 43.93 3.85
831 882 3.878519 GACGCGGACGAGGAGGAG 61.879 72.222 12.47 0.00 43.93 3.69
837 888 3.744749 TAATGCGGACGCGGACGAG 62.745 63.158 25.10 10.92 45.51 4.18
838 889 2.815825 TTTAATGCGGACGCGGACGA 62.816 55.000 25.10 12.44 45.51 4.20
840 891 1.347221 CTTTAATGCGGACGCGGAC 59.653 57.895 12.47 3.69 45.51 4.79
841 892 1.812093 CCTTTAATGCGGACGCGGA 60.812 57.895 12.47 0.00 45.51 5.54
843 894 1.347221 GTCCTTTAATGCGGACGCG 59.653 57.895 3.53 3.53 45.51 6.01
847 898 2.147958 GTGTGTGTCCTTTAATGCGGA 58.852 47.619 0.00 0.00 0.00 5.54
868 940 2.890109 GCCATGAATGCGAGCTCCG 61.890 63.158 8.47 4.62 42.21 4.63
1039 1112 3.876914 CCGTGTATGTACGTACCTAGGAA 59.123 47.826 22.43 3.40 42.24 3.36
1055 1128 1.835267 AGTGAGTGTGGGCCGTGTA 60.835 57.895 0.00 0.00 0.00 2.90
1056 1129 3.161450 AGTGAGTGTGGGCCGTGT 61.161 61.111 0.00 0.00 0.00 4.49
1057 1130 2.666190 CAGTGAGTGTGGGCCGTG 60.666 66.667 0.00 0.00 0.00 4.94
1058 1131 4.626081 GCAGTGAGTGTGGGCCGT 62.626 66.667 0.00 0.00 0.00 5.68
1059 1132 3.907260 ATGCAGTGAGTGTGGGCCG 62.907 63.158 0.00 0.00 0.00 6.13
1060 1133 2.034687 ATGCAGTGAGTGTGGGCC 59.965 61.111 0.00 0.00 0.00 5.80
1061 1134 1.580845 GACATGCAGTGAGTGTGGGC 61.581 60.000 5.67 0.00 0.00 5.36
1062 1135 0.250424 TGACATGCAGTGAGTGTGGG 60.250 55.000 5.67 0.00 0.00 4.61
1063 1136 1.817357 ATGACATGCAGTGAGTGTGG 58.183 50.000 5.67 0.00 0.00 4.17
1095 1168 2.109181 CCCGCTAAGCTGGCTACC 59.891 66.667 9.70 0.00 0.00 3.18
1101 1174 0.596083 CGATGTCTCCCGCTAAGCTG 60.596 60.000 0.00 0.00 0.00 4.24
1126 1199 2.689034 GACCCCTGTCCCTGGAGG 60.689 72.222 0.00 0.00 35.34 4.30
1128 1201 4.715130 CCGACCCCTGTCCCTGGA 62.715 72.222 0.00 0.00 38.32 3.86
1136 1209 4.530857 GCACGATCCCGACCCCTG 62.531 72.222 0.00 0.00 39.50 4.45
1174 1247 1.002624 TTGACGTCCATCTTGCCCC 60.003 57.895 14.12 0.00 0.00 5.80
2292 2370 3.877559 TGAGTGGATTAATCACCTGCAG 58.122 45.455 17.07 6.78 35.87 4.41
2310 2388 8.568794 TGTAGAGTACGATAGAATTGGAATGAG 58.431 37.037 0.00 0.00 41.38 2.90
2311 2389 8.459911 TGTAGAGTACGATAGAATTGGAATGA 57.540 34.615 0.00 0.00 41.38 2.57
2325 2403 7.543756 TGATGATGTCAAAATGTAGAGTACGA 58.456 34.615 0.00 0.00 32.78 3.43
2349 2436 4.806640 AATTAATCTGGCCCAAGTGTTG 57.193 40.909 0.00 0.00 0.00 3.33
2353 2440 6.321435 GCTAAGTTAATTAATCTGGCCCAAGT 59.679 38.462 0.00 0.00 0.00 3.16
2356 2443 5.761205 TGCTAAGTTAATTAATCTGGCCCA 58.239 37.500 0.00 0.00 0.00 5.36
2358 2445 9.034544 CAATTTGCTAAGTTAATTAATCTGGCC 57.965 33.333 0.31 0.00 0.00 5.36
2388 2475 4.191544 GAGCTTGCATCAACCATGTAGTA 58.808 43.478 0.00 0.00 34.56 1.82
2389 2476 3.012518 GAGCTTGCATCAACCATGTAGT 58.987 45.455 0.00 0.00 34.56 2.73
2390 2477 2.357009 GGAGCTTGCATCAACCATGTAG 59.643 50.000 0.00 0.00 34.56 2.74
2391 2478 2.025981 AGGAGCTTGCATCAACCATGTA 60.026 45.455 0.00 0.00 34.56 2.29
2393 2480 1.471119 AGGAGCTTGCATCAACCATG 58.529 50.000 0.00 0.00 35.29 3.66
2395 2482 1.614903 CAAAGGAGCTTGCATCAACCA 59.385 47.619 0.00 0.00 0.00 3.67
2396 2483 1.067354 CCAAAGGAGCTTGCATCAACC 60.067 52.381 0.00 0.00 0.00 3.77
2397 2484 1.067354 CCCAAAGGAGCTTGCATCAAC 60.067 52.381 0.00 0.00 33.47 3.18
2402 2489 1.457267 TTGCCCAAAGGAGCTTGCA 60.457 52.632 0.00 0.00 33.47 4.08
2403 2490 1.291272 CTTGCCCAAAGGAGCTTGC 59.709 57.895 0.00 0.00 33.47 4.01
2404 2491 0.600057 GACTTGCCCAAAGGAGCTTG 59.400 55.000 0.00 0.00 40.51 4.01
2405 2492 0.185901 TGACTTGCCCAAAGGAGCTT 59.814 50.000 0.00 0.00 40.51 3.74
2408 2495 3.160269 AGAATTGACTTGCCCAAAGGAG 58.840 45.455 0.00 0.00 40.51 3.69
2409 2496 3.243359 AGAATTGACTTGCCCAAAGGA 57.757 42.857 0.00 0.00 40.51 3.36
2410 2497 3.119849 CGTAGAATTGACTTGCCCAAAGG 60.120 47.826 0.00 0.00 40.51 3.11
2411 2498 3.751175 TCGTAGAATTGACTTGCCCAAAG 59.249 43.478 0.00 0.00 42.07 2.77
2414 2501 3.410631 TTCGTAGAATTGACTTGCCCA 57.589 42.857 0.00 0.00 45.90 5.36
2416 2503 4.558860 GCAATTTCGTAGAATTGACTTGCC 59.441 41.667 18.67 3.92 45.90 4.52
2417 2504 5.284660 CAGCAATTTCGTAGAATTGACTTGC 59.715 40.000 18.67 0.00 45.90 4.01
2418 2505 5.284660 GCAGCAATTTCGTAGAATTGACTTG 59.715 40.000 18.67 14.71 45.90 3.16
2421 2515 4.098416 GGCAGCAATTTCGTAGAATTGAC 58.902 43.478 18.67 12.59 45.90 3.18
2439 2533 4.142381 GCCAAATGTCTACTTTAAGGGCAG 60.142 45.833 0.00 0.00 0.00 4.85
2474 2568 6.436218 TGTCATAGTGCTAAAGTGGACTTCTA 59.564 38.462 0.00 0.00 39.33 2.10
2590 2684 2.941064 GACTGATGGTGATGGTGTGATG 59.059 50.000 0.00 0.00 0.00 3.07
2591 2685 2.419159 CGACTGATGGTGATGGTGTGAT 60.419 50.000 0.00 0.00 0.00 3.06
2608 2702 1.137086 CAAAGATGGGACCGATCGACT 59.863 52.381 18.66 0.00 0.00 4.18
2624 2718 7.468922 CTTAAACAGGAAAAGGAAAGCAAAG 57.531 36.000 0.00 0.00 0.00 2.77
2761 2857 2.230266 TCGGTCGTGAGTGATCATTTGA 59.770 45.455 0.00 0.00 0.00 2.69
2776 2872 0.645355 CGTGTCCAAATCATCGGTCG 59.355 55.000 0.00 0.00 0.00 4.79
2819 2915 3.312828 GCTCACTGATAATGAGGTAGCG 58.687 50.000 4.31 0.00 43.26 4.26
2830 2926 1.555075 GTTGACCCTGGCTCACTGATA 59.445 52.381 0.00 0.00 0.00 2.15
2843 2939 2.244946 GGTCGCTTTCAGTTGACCC 58.755 57.895 0.00 0.00 44.06 4.46
2893 2989 1.809207 CAGGCGCCGAAAATTGGAT 59.191 52.632 23.20 0.00 0.00 3.41
2910 3006 1.289694 CGAAAATTGCTGGGCTGCA 59.710 52.632 0.50 1.95 41.65 4.41
2922 3018 3.663025 CCAGAAATTTGGCACCGAAAAT 58.337 40.909 0.00 0.00 0.00 1.82
2932 3029 2.181525 CCGCCGCCAGAAATTTGG 59.818 61.111 0.00 0.00 41.35 3.28
2933 3030 2.506881 GCCGCCGCCAGAAATTTG 60.507 61.111 0.00 0.00 0.00 2.32
2934 3031 4.114997 CGCCGCCGCCAGAAATTT 62.115 61.111 0.00 0.00 0.00 1.82
2935 3032 3.961838 TACGCCGCCGCCAGAAATT 62.962 57.895 0.00 0.00 38.22 1.82
2936 3033 4.460683 TACGCCGCCGCCAGAAAT 62.461 61.111 0.00 0.00 38.22 2.17
2958 3062 5.173854 GCCTGCGATCAACAAAATATTTAGC 59.826 40.000 0.01 0.00 0.00 3.09
2961 3065 4.104776 CGCCTGCGATCAACAAAATATTT 58.895 39.130 5.43 0.00 42.83 1.40
2970 3074 3.499737 CCACCGCCTGCGATCAAC 61.500 66.667 13.94 0.00 42.83 3.18
2974 3078 3.958147 CTTCACCACCGCCTGCGAT 62.958 63.158 13.94 0.00 42.83 4.58
3088 3192 3.017232 CGTGTAGAACTCCACGCTC 57.983 57.895 6.96 0.00 46.45 5.03
3352 3456 2.995574 AAGGTCTCGGTGGGGTCG 60.996 66.667 0.00 0.00 0.00 4.79
3446 3550 0.734889 GTGGACGGAGGCAATCAATG 59.265 55.000 0.00 0.00 0.00 2.82
3463 3567 3.803082 CGCCGTGCATTCTGGGTG 61.803 66.667 0.00 0.00 0.00 4.61
3496 3600 0.383231 CTATCCGTGACGTGGGGTAC 59.617 60.000 3.64 0.00 0.00 3.34
3497 3601 0.752743 CCTATCCGTGACGTGGGGTA 60.753 60.000 3.64 0.00 0.00 3.69
3498 3602 2.056223 CCTATCCGTGACGTGGGGT 61.056 63.158 3.64 0.00 0.00 4.95
3499 3603 2.056223 ACCTATCCGTGACGTGGGG 61.056 63.158 3.64 3.21 0.00 4.96
3500 3604 1.141019 CACCTATCCGTGACGTGGG 59.859 63.158 3.64 0.00 35.68 4.61
3519 3623 0.738389 CATGACACCCCGCCATTAAC 59.262 55.000 0.00 0.00 0.00 2.01
3563 3672 1.588932 CGATGTCACGCCGCAGTAT 60.589 57.895 0.00 0.00 0.00 2.12
3614 3723 0.025513 GAGACGTCGCATTGCATCAC 59.974 55.000 14.83 1.11 0.00 3.06
3658 3767 8.945057 GCACTAATCAAGAGAAGAGAAGAAAAT 58.055 33.333 0.00 0.00 0.00 1.82
3663 3772 5.743398 CGAGCACTAATCAAGAGAAGAGAAG 59.257 44.000 0.00 0.00 0.00 2.85
3666 3775 5.242069 TCGAGCACTAATCAAGAGAAGAG 57.758 43.478 0.00 0.00 0.00 2.85
3667 3776 5.221145 GGATCGAGCACTAATCAAGAGAAGA 60.221 44.000 1.84 0.00 0.00 2.87
3668 3777 4.981674 GGATCGAGCACTAATCAAGAGAAG 59.018 45.833 1.84 0.00 0.00 2.85
3706 3823 9.844257 AGAATTCAAGAGAAGAAGAAAGAAGAA 57.156 29.630 8.44 0.00 37.14 2.52
3707 3824 9.844257 AAGAATTCAAGAGAAGAAGAAAGAAGA 57.156 29.630 8.44 0.00 37.14 2.87
3708 3825 9.881529 CAAGAATTCAAGAGAAGAAGAAAGAAG 57.118 33.333 8.44 0.00 37.14 2.85
3709 3826 9.618890 TCAAGAATTCAAGAGAAGAAGAAAGAA 57.381 29.630 8.44 0.00 37.14 2.52
3710 3827 9.790344 ATCAAGAATTCAAGAGAAGAAGAAAGA 57.210 29.630 8.44 0.00 37.14 2.52
3773 3893 9.474920 TTTCTTGCAACAAAAATATACTCCAAG 57.525 29.630 0.00 0.00 0.00 3.61
3803 3934 9.053840 GCCTAGTACTCCTTAAAATTATCCAAC 57.946 37.037 0.00 0.00 0.00 3.77
3806 3937 7.440198 ACGCCTAGTACTCCTTAAAATTATCC 58.560 38.462 0.00 0.00 0.00 2.59
3808 3939 9.676861 AAAACGCCTAGTACTCCTTAAAATTAT 57.323 29.630 0.00 0.00 0.00 1.28
3809 3940 8.938906 CAAAACGCCTAGTACTCCTTAAAATTA 58.061 33.333 0.00 0.00 0.00 1.40
3822 3953 2.169769 CCATCCTCCAAAACGCCTAGTA 59.830 50.000 0.00 0.00 0.00 1.82
3823 3954 1.065418 CCATCCTCCAAAACGCCTAGT 60.065 52.381 0.00 0.00 0.00 2.57
3824 3955 1.668419 CCATCCTCCAAAACGCCTAG 58.332 55.000 0.00 0.00 0.00 3.02
3901 4076 9.961265 TCGTTGTATACTTGTATTTCTATCCAG 57.039 33.333 4.17 0.00 0.00 3.86
3911 4086 9.811995 ACACATTACATCGTTGTATACTTGTAT 57.188 29.630 7.15 0.00 38.12 2.29
3917 4348 6.182634 GCACACACATTACATCGTTGTATAC 58.817 40.000 7.15 0.00 38.12 1.47
3921 4352 2.096466 CGCACACACATTACATCGTTGT 60.096 45.455 4.29 4.29 39.98 3.32
3922 4353 2.096466 ACGCACACACATTACATCGTTG 60.096 45.455 0.00 0.00 0.00 4.10
3925 4356 1.459209 ACACGCACACACATTACATCG 59.541 47.619 0.00 0.00 0.00 3.84
3944 4375 9.620660 TCATCGTGATATATTACACACATACAC 57.379 33.333 8.23 0.00 36.91 2.90
3961 4392 7.041848 TCGCAATTCAAGATATTTCATCGTGAT 60.042 33.333 4.18 0.00 36.66 3.06
3998 4429 2.585330 TCAAAATGAGAGCTGCACCAA 58.415 42.857 1.02 0.00 0.00 3.67
3999 4430 2.275134 TCAAAATGAGAGCTGCACCA 57.725 45.000 1.02 0.00 0.00 4.17
4001 4432 3.844577 ACATCAAAATGAGAGCTGCAC 57.155 42.857 1.02 0.00 36.67 4.57
4002 4433 4.582869 ACTACATCAAAATGAGAGCTGCA 58.417 39.130 1.02 0.00 36.67 4.41
4003 4434 6.857777 ATACTACATCAAAATGAGAGCTGC 57.142 37.500 0.00 0.00 36.67 5.25
4005 4436 9.624373 ATGAAATACTACATCAAAATGAGAGCT 57.376 29.630 0.00 0.00 36.67 4.09
4006 4437 9.875675 GATGAAATACTACATCAAAATGAGAGC 57.124 33.333 0.00 0.00 41.44 4.09
4029 4460 6.258230 ACATGTGTGTACATTTTCAGGATG 57.742 37.500 0.00 0.91 45.01 3.51
4049 4480 8.429641 ACATACAACCGGAGAGATAATTTACAT 58.570 33.333 9.46 0.00 0.00 2.29
4060 4491 6.737254 AAAAATACACATACAACCGGAGAG 57.263 37.500 9.46 0.00 0.00 3.20
4117 4548 8.028652 TCCATGGAGGACAAGTTTTAAAAATT 57.971 30.769 11.44 7.77 43.07 1.82
4118 4549 7.610580 TCCATGGAGGACAAGTTTTAAAAAT 57.389 32.000 11.44 0.00 43.07 1.82
4123 4554 3.330701 AGCTCCATGGAGGACAAGTTTTA 59.669 43.478 36.92 2.30 43.07 1.52
4125 4556 1.707427 AGCTCCATGGAGGACAAGTTT 59.293 47.619 36.92 7.87 43.07 2.66
4126 4557 1.280421 GAGCTCCATGGAGGACAAGTT 59.720 52.381 36.92 14.08 43.07 2.66
4128 4559 0.179089 CGAGCTCCATGGAGGACAAG 60.179 60.000 36.92 16.83 43.07 3.16
4129 4560 0.614697 TCGAGCTCCATGGAGGACAA 60.615 55.000 36.92 12.78 43.07 3.18
4147 4581 3.542291 CGCGTAAATGCTAAACAGAGCTC 60.542 47.826 5.27 5.27 43.27 4.09
4153 4587 5.340138 GCTTAAAACGCGTAAATGCTAAACA 59.660 36.000 14.46 0.00 0.00 2.83
4154 4588 5.566395 AGCTTAAAACGCGTAAATGCTAAAC 59.434 36.000 14.46 0.16 0.00 2.01
4155 4589 5.691815 AGCTTAAAACGCGTAAATGCTAAA 58.308 33.333 14.46 0.00 0.00 1.85
4165 4599 2.738013 AGTAGGAGCTTAAAACGCGT 57.262 45.000 5.58 5.58 0.00 6.01
4169 4603 9.303537 CTTCATACTGTAGTAGGAGCTTAAAAC 57.696 37.037 6.52 0.00 41.48 2.43
4177 4611 4.279671 CCAGCCTTCATACTGTAGTAGGAG 59.720 50.000 13.65 0.00 41.48 3.69
4187 4621 1.073763 TGTTGCACCAGCCTTCATACT 59.926 47.619 0.00 0.00 41.13 2.12
4191 4625 0.535780 CTCTGTTGCACCAGCCTTCA 60.536 55.000 6.35 0.00 41.13 3.02
4202 4636 0.951040 CAGACCCGGAACTCTGTTGC 60.951 60.000 0.73 0.00 30.97 4.17
4204 4638 1.122019 AGCAGACCCGGAACTCTGTT 61.122 55.000 19.15 13.53 36.94 3.16
4205 4639 1.122019 AAGCAGACCCGGAACTCTGT 61.122 55.000 19.15 2.54 36.94 3.41
4217 4651 2.080286 TTGCTCTAACGGAAGCAGAC 57.920 50.000 0.00 0.00 38.57 3.51
4226 4660 5.295431 TGGTTCATTCATTTGCTCTAACG 57.705 39.130 0.00 0.00 0.00 3.18
4290 4739 2.565210 TTTCAGTCACACACGTACGT 57.435 45.000 16.72 16.72 0.00 3.57
4291 4740 2.599527 TGTTTTCAGTCACACACGTACG 59.400 45.455 15.01 15.01 0.00 3.67
4292 4741 4.269123 TGATGTTTTCAGTCACACACGTAC 59.731 41.667 0.00 0.00 0.00 3.67
4293 4742 4.434520 TGATGTTTTCAGTCACACACGTA 58.565 39.130 0.00 0.00 0.00 3.57
4331 4780 1.771854 TGCTACCTCTGACCAAACCAA 59.228 47.619 0.00 0.00 0.00 3.67
4356 4814 1.026182 TCTTTCGGCGCATCAAGCAT 61.026 50.000 10.83 0.00 46.13 3.79
4412 4870 2.684881 AGCTCAAATGTCGGCTTAATGG 59.315 45.455 0.00 0.00 0.00 3.16
4439 4899 5.063438 CCACAACGTAGTACATCATTCTTGG 59.937 44.000 0.38 0.00 45.00 3.61
4447 4907 4.171754 GTCTTCCCACAACGTAGTACATC 58.828 47.826 0.38 0.00 45.00 3.06
4451 4911 2.503331 TCGTCTTCCCACAACGTAGTA 58.497 47.619 0.00 0.00 45.00 1.82
4453 4913 2.030540 TCTTCGTCTTCCCACAACGTAG 60.031 50.000 0.00 0.00 37.64 3.51
4454 4914 1.955778 TCTTCGTCTTCCCACAACGTA 59.044 47.619 0.00 0.00 37.64 3.57
4455 4915 0.748450 TCTTCGTCTTCCCACAACGT 59.252 50.000 0.00 0.00 37.64 3.99
4456 4916 1.726791 CATCTTCGTCTTCCCACAACG 59.273 52.381 0.00 0.00 37.74 4.10
4457 4917 2.996621 CTCATCTTCGTCTTCCCACAAC 59.003 50.000 0.00 0.00 0.00 3.32
4458 4918 2.897326 TCTCATCTTCGTCTTCCCACAA 59.103 45.455 0.00 0.00 0.00 3.33
4459 4919 2.231478 GTCTCATCTTCGTCTTCCCACA 59.769 50.000 0.00 0.00 0.00 4.17
4460 4920 2.732597 CGTCTCATCTTCGTCTTCCCAC 60.733 54.545 0.00 0.00 0.00 4.61
4461 4921 1.472878 CGTCTCATCTTCGTCTTCCCA 59.527 52.381 0.00 0.00 0.00 4.37
4462 4922 1.473278 ACGTCTCATCTTCGTCTTCCC 59.527 52.381 0.00 0.00 32.26 3.97
4463 4923 2.161808 TCACGTCTCATCTTCGTCTTCC 59.838 50.000 0.00 0.00 35.62 3.46
4464 4924 3.125487 TCTCACGTCTCATCTTCGTCTTC 59.875 47.826 0.00 0.00 35.62 2.87
4465 4925 3.075148 TCTCACGTCTCATCTTCGTCTT 58.925 45.455 0.00 0.00 35.62 3.01
4467 4927 2.223157 CCTCTCACGTCTCATCTTCGTC 60.223 54.545 0.00 0.00 35.62 4.20
4468 4928 1.740585 CCTCTCACGTCTCATCTTCGT 59.259 52.381 0.00 0.00 38.34 3.85
4469 4929 1.064803 CCCTCTCACGTCTCATCTTCG 59.935 57.143 0.00 0.00 0.00 3.79
4476 4936 0.741915 GGATGTCCCTCTCACGTCTC 59.258 60.000 0.00 0.00 31.43 3.36
4519 4980 1.404391 CCTGCTTCTTCATGTCCATGC 59.596 52.381 2.33 0.00 38.65 4.06
4580 5041 1.741706 CTGCCACTCACTTAAGCCATG 59.258 52.381 1.29 0.00 0.00 3.66
4619 5083 4.335594 CCAAGCAATGTAGGCCTAGTTTAC 59.664 45.833 14.38 3.80 0.00 2.01
4647 5111 7.589958 ATGTTCCACTCTTAATACTCTCGAT 57.410 36.000 0.00 0.00 0.00 3.59
4648 5112 7.406031 AATGTTCCACTCTTAATACTCTCGA 57.594 36.000 0.00 0.00 0.00 4.04
4694 5161 3.134262 GTCCCTACATGAAAGGACCCTAC 59.866 52.174 17.19 6.52 42.49 3.18
4695 5162 3.246203 TGTCCCTACATGAAAGGACCCTA 60.246 47.826 21.68 8.08 46.80 3.53
4696 5163 2.197465 GTCCCTACATGAAAGGACCCT 58.803 52.381 17.19 0.00 42.49 4.34
4697 5164 1.913419 TGTCCCTACATGAAAGGACCC 59.087 52.381 21.68 10.58 46.80 4.46
4698 5165 2.355818 GGTGTCCCTACATGAAAGGACC 60.356 54.545 21.68 16.02 46.80 4.46
4700 5167 2.571653 CAGGTGTCCCTACATGAAAGGA 59.428 50.000 17.19 8.85 39.89 3.36
4701 5168 2.305927 ACAGGTGTCCCTACATGAAAGG 59.694 50.000 0.00 5.77 39.89 3.11
4702 5169 3.703001 ACAGGTGTCCCTACATGAAAG 57.297 47.619 0.00 0.00 39.89 2.62
4703 5170 4.104102 AGAAACAGGTGTCCCTACATGAAA 59.896 41.667 0.00 0.00 39.89 2.69
4704 5171 3.650942 AGAAACAGGTGTCCCTACATGAA 59.349 43.478 0.00 0.00 39.89 2.57
4705 5172 3.248024 AGAAACAGGTGTCCCTACATGA 58.752 45.455 0.00 0.00 39.89 3.07
4706 5173 3.703001 AGAAACAGGTGTCCCTACATG 57.297 47.619 0.00 0.00 39.89 3.21
4707 5174 6.388619 AATTAGAAACAGGTGTCCCTACAT 57.611 37.500 0.00 0.00 39.89 2.29
4708 5175 5.836024 AATTAGAAACAGGTGTCCCTACA 57.164 39.130 0.00 0.00 39.89 2.74
4709 5176 6.155737 TCCTAATTAGAAACAGGTGTCCCTAC 59.844 42.308 14.28 0.00 39.89 3.18
4714 5181 6.255887 CGTGATCCTAATTAGAAACAGGTGTC 59.744 42.308 14.28 3.23 0.00 3.67
4727 5194 1.599071 CATGCACGCGTGATCCTAATT 59.401 47.619 41.19 13.28 35.09 1.40
4732 5199 0.316442 CATTCATGCACGCGTGATCC 60.316 55.000 41.19 24.28 41.03 3.36
4735 5202 0.389687 TCTCATTCATGCACGCGTGA 60.390 50.000 41.19 25.87 39.86 4.35
4741 5208 5.769484 ATGAAAGGATCTCATTCATGCAC 57.231 39.130 15.52 0.00 41.06 4.57
4763 5230 1.139498 TCCTGATTTGCCCCCTCACA 61.139 55.000 0.00 0.00 0.00 3.58
4785 5252 4.202567 ACCACTTGAGGATTTGGTACATGT 60.203 41.667 2.69 2.69 40.69 3.21
4786 5253 4.335416 ACCACTTGAGGATTTGGTACATG 58.665 43.478 0.00 0.00 40.69 3.21
4788 5255 4.447138 AACCACTTGAGGATTTGGTACA 57.553 40.909 0.00 0.00 41.68 2.90
4791 5258 4.670896 CAAAACCACTTGAGGATTTGGT 57.329 40.909 10.34 0.00 43.62 3.67
4826 5293 2.140717 GGTCCGACGTTTCTCAAATGT 58.859 47.619 0.00 0.00 42.99 2.71
4833 5300 3.405823 TTTTATGGGTCCGACGTTTCT 57.594 42.857 0.00 0.00 0.00 2.52
4834 5301 4.690184 AATTTTATGGGTCCGACGTTTC 57.310 40.909 0.00 0.00 0.00 2.78
4838 5305 4.688511 TGAAAATTTTATGGGTCCGACG 57.311 40.909 2.75 0.00 0.00 5.12
4842 5309 4.368315 GCCGATGAAAATTTTATGGGTCC 58.632 43.478 11.81 0.00 0.00 4.46
4843 5310 4.041723 CGCCGATGAAAATTTTATGGGTC 58.958 43.478 11.81 5.21 0.00 4.46
4846 5313 4.667262 TGTCGCCGATGAAAATTTTATGG 58.333 39.130 2.75 4.83 0.00 2.74
4858 5325 1.203928 GAGATTGACTGTCGCCGATG 58.796 55.000 2.98 0.00 0.00 3.84
4859 5326 0.248661 CGAGATTGACTGTCGCCGAT 60.249 55.000 2.98 0.00 33.56 4.18
4860 5327 1.136774 CGAGATTGACTGTCGCCGA 59.863 57.895 2.98 0.00 33.56 5.54
4861 5328 1.874019 CCGAGATTGACTGTCGCCG 60.874 63.158 2.98 2.37 39.21 6.46
4862 5329 0.103208 ATCCGAGATTGACTGTCGCC 59.897 55.000 2.98 0.00 39.21 5.54
4863 5330 1.202302 TCATCCGAGATTGACTGTCGC 60.202 52.381 2.98 0.00 39.21 5.19
4864 5331 2.542618 CCTCATCCGAGATTGACTGTCG 60.543 54.545 2.98 0.00 42.34 4.35
4865 5332 2.801342 GCCTCATCCGAGATTGACTGTC 60.801 54.545 0.00 0.00 42.34 3.51
4866 5333 1.137872 GCCTCATCCGAGATTGACTGT 59.862 52.381 0.00 0.00 42.34 3.55
4867 5334 1.539929 GGCCTCATCCGAGATTGACTG 60.540 57.143 0.00 0.00 42.34 3.51
4868 5335 0.755686 GGCCTCATCCGAGATTGACT 59.244 55.000 0.00 0.00 42.34 3.41
4869 5336 3.297391 GGCCTCATCCGAGATTGAC 57.703 57.895 0.00 0.00 42.34 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.