Multiple sequence alignment - TraesCS7A01G453600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G453600 chr7A 100.000 1451 0 0 1 1451 648043807 648042357 0.000000e+00 2680
1 TraesCS7A01G453600 chr7A 100.000 1357 0 0 1980 3336 648041828 648040472 0.000000e+00 2507
2 TraesCS7A01G453600 chr7A 91.143 700 45 7 678 1373 647307927 647307241 0.000000e+00 933
3 TraesCS7A01G453600 chr7A 91.395 674 43 6 785 1448 647917671 647917003 0.000000e+00 909
4 TraesCS7A01G453600 chr7A 90.323 527 45 4 925 1451 647862927 647862407 0.000000e+00 686
5 TraesCS7A01G453600 chr7A 92.225 373 28 1 1982 2353 647306313 647305941 8.200000e-146 527
6 TraesCS7A01G453600 chr7A 90.439 387 34 2 1981 2366 647315501 647315117 1.070000e-139 507
7 TraesCS7A01G453600 chr7A 84.736 511 58 13 1983 2479 647917114 647916610 8.310000e-136 494
8 TraesCS7A01G453600 chr7A 83.883 515 61 16 2035 2533 647861701 647861193 3.900000e-129 472
9 TraesCS7A01G453600 chr7A 86.522 230 21 7 453 679 647308432 647308210 9.250000e-61 244
10 TraesCS7A01G453600 chr7D 91.598 964 60 12 496 1447 562149694 562148740 0.000000e+00 1312
11 TraesCS7A01G453600 chr7D 94.457 451 25 0 1001 1451 562148958 562148508 0.000000e+00 695
12 TraesCS7A01G453600 chr7D 88.656 573 58 4 883 1450 562401428 562401998 0.000000e+00 691
13 TraesCS7A01G453600 chr7D 91.451 503 39 4 925 1425 562424798 562425298 0.000000e+00 688
14 TraesCS7A01G453600 chr7D 83.477 696 76 21 1985 2649 562389785 562390472 2.200000e-171 612
15 TraesCS7A01G453600 chr7D 85.921 554 55 11 2025 2560 562403042 562403590 1.340000e-158 569
16 TraesCS7A01G453600 chr7D 91.667 396 28 4 1982 2375 562257143 562256751 8.140000e-151 544
17 TraesCS7A01G453600 chr7D 92.493 373 27 1 1982 2353 562148624 562148252 1.760000e-147 532
18 TraesCS7A01G453600 chr7D 85.421 535 44 22 2079 2581 562425700 562426232 2.950000e-145 525
19 TraesCS7A01G453600 chr7D 86.301 292 20 7 3042 3331 562404565 562404838 1.950000e-77 300
20 TraesCS7A01G453600 chr7D 77.397 146 20 7 74 211 562424029 562424169 1.280000e-09 75
21 TraesCS7A01G453600 chr7B 91.398 651 52 2 723 1369 611731258 611730608 0.000000e+00 889
22 TraesCS7A01G453600 chr7B 86.697 654 57 10 1980 2605 611962054 611961403 0.000000e+00 699
23 TraesCS7A01G453600 chr7B 92.739 482 34 1 970 1451 612256491 612256011 0.000000e+00 695
24 TraesCS7A01G453600 chr7B 88.752 569 48 6 1980 2533 611741744 611741177 0.000000e+00 682
25 TraesCS7A01G453600 chr7B 85.949 548 41 18 2037 2581 612255601 612255087 1.350000e-153 553
26 TraesCS7A01G453600 chr7B 81.953 338 47 11 3003 3336 612254478 612254151 1.180000e-69 274
27 TraesCS7A01G453600 chr7B 89.362 94 7 2 75 168 611731795 611731705 7.560000e-22 115
28 TraesCS7A01G453600 chrUn 92.157 357 27 1 1982 2337 20705838 20706194 1.380000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G453600 chr7A 648040472 648043807 3335 True 2593.500000 2680 100.000000 1 3336 2 chr7A.!!$R5 3335
1 TraesCS7A01G453600 chr7A 647916610 647917671 1061 True 701.500000 909 88.065500 785 2479 2 chr7A.!!$R4 1694
2 TraesCS7A01G453600 chr7A 647861193 647862927 1734 True 579.000000 686 87.103000 925 2533 2 chr7A.!!$R3 1608
3 TraesCS7A01G453600 chr7A 647305941 647308432 2491 True 568.000000 933 89.963333 453 2353 3 chr7A.!!$R2 1900
4 TraesCS7A01G453600 chr7D 562148252 562149694 1442 True 846.333333 1312 92.849333 496 2353 3 chr7D.!!$R2 1857
5 TraesCS7A01G453600 chr7D 562389785 562390472 687 False 612.000000 612 83.477000 1985 2649 1 chr7D.!!$F1 664
6 TraesCS7A01G453600 chr7D 562401428 562404838 3410 False 520.000000 691 86.959333 883 3331 3 chr7D.!!$F2 2448
7 TraesCS7A01G453600 chr7D 562424029 562426232 2203 False 429.333333 688 84.756333 74 2581 3 chr7D.!!$F3 2507
8 TraesCS7A01G453600 chr7B 611961403 611962054 651 True 699.000000 699 86.697000 1980 2605 1 chr7B.!!$R2 625
9 TraesCS7A01G453600 chr7B 611741177 611741744 567 True 682.000000 682 88.752000 1980 2533 1 chr7B.!!$R1 553
10 TraesCS7A01G453600 chr7B 612254151 612256491 2340 True 507.333333 695 86.880333 970 3336 3 chr7B.!!$R4 2366
11 TraesCS7A01G453600 chr7B 611730608 611731795 1187 True 502.000000 889 90.380000 75 1369 2 chr7B.!!$R3 1294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.103208 ATCGTCGACTGATTCCTGCC 59.897 55.0 14.70 0.0 0.00 4.85 F
1200 2137 0.193574 TCCAGAAGGAGTCCACCCTT 59.806 55.0 12.86 0.0 46.03 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 2179 0.033504 TCTTGCCGGTGAGTGTCTTC 59.966 55.0 1.9 0.0 0.0 2.87 R
2776 6838 0.108424 ACATCTGAAGAGAGCCGCAC 60.108 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.602771 CCTCCGTTTTCTCCTCCCC 59.397 63.158 0.00 0.00 0.00 4.81
19 20 1.602771 CTCCGTTTTCTCCTCCCCC 59.397 63.158 0.00 0.00 0.00 5.40
33 34 4.779475 CCCCCTATCGTCATGTGC 57.221 61.111 0.00 0.00 0.00 4.57
34 35 1.300931 CCCCCTATCGTCATGTGCG 60.301 63.158 6.19 6.19 0.00 5.34
35 36 1.956170 CCCCTATCGTCATGTGCGC 60.956 63.158 0.00 0.00 0.00 6.09
36 37 2.302952 CCCTATCGTCATGTGCGCG 61.303 63.158 0.00 0.00 0.00 6.86
37 38 2.541437 CTATCGTCATGTGCGCGC 59.459 61.111 27.26 27.26 0.00 6.86
38 39 2.932083 CTATCGTCATGTGCGCGCC 61.932 63.158 30.77 20.33 0.00 6.53
73 74 3.385314 AGGAGTAGGACTACCTTGACC 57.615 52.381 5.90 3.44 45.36 4.02
74 75 2.927685 AGGAGTAGGACTACCTTGACCT 59.072 50.000 5.90 0.00 45.36 3.85
75 76 3.337301 AGGAGTAGGACTACCTTGACCTT 59.663 47.826 5.90 0.00 45.36 3.50
76 77 3.447944 GGAGTAGGACTACCTTGACCTTG 59.552 52.174 5.90 0.00 45.36 3.61
77 78 4.342359 GAGTAGGACTACCTTGACCTTGA 58.658 47.826 5.90 0.00 45.36 3.02
80 81 3.791320 AGGACTACCTTGACCTTGATCA 58.209 45.455 0.00 0.00 45.36 2.92
84 85 5.355350 GGACTACCTTGACCTTGATCAATTG 59.645 44.000 8.96 6.10 37.93 2.32
123 124 6.816640 TCGATTCCTGTTAGTAGTTTGGATTG 59.183 38.462 0.00 0.00 0.00 2.67
125 126 6.442541 TTCCTGTTAGTAGTTTGGATTGGA 57.557 37.500 0.00 0.00 0.00 3.53
126 127 6.636454 TCCTGTTAGTAGTTTGGATTGGAT 57.364 37.500 0.00 0.00 0.00 3.41
127 128 7.027874 TCCTGTTAGTAGTTTGGATTGGATT 57.972 36.000 0.00 0.00 0.00 3.01
168 169 4.911053 AGTCTGTTATCGTCGACTGATTC 58.089 43.478 21.77 16.70 35.56 2.52
170 171 3.945921 TCTGTTATCGTCGACTGATTCCT 59.054 43.478 21.77 7.14 0.00 3.36
171 172 4.028852 TGTTATCGTCGACTGATTCCTG 57.971 45.455 21.77 2.93 0.00 3.86
172 173 2.776312 TATCGTCGACTGATTCCTGC 57.224 50.000 21.77 0.00 0.00 4.85
173 174 0.103208 ATCGTCGACTGATTCCTGCC 59.897 55.000 14.70 0.00 0.00 4.85
178 185 0.673644 CGACTGATTCCTGCCGGTTT 60.674 55.000 1.90 0.00 0.00 3.27
197 204 4.083484 GGTTTGGTTAGTCGAGGTTGATTG 60.083 45.833 0.00 0.00 0.00 2.67
211 218 4.466370 AGGTTGATTGGACTCGATTGTAGA 59.534 41.667 0.00 0.00 0.00 2.59
213 220 5.817816 GGTTGATTGGACTCGATTGTAGATT 59.182 40.000 0.00 0.00 0.00 2.40
214 221 6.238211 GGTTGATTGGACTCGATTGTAGATTG 60.238 42.308 0.00 0.00 0.00 2.67
216 223 6.406370 TGATTGGACTCGATTGTAGATTGTT 58.594 36.000 0.00 0.00 0.00 2.83
218 225 5.661056 TGGACTCGATTGTAGATTGTTCT 57.339 39.130 0.00 0.00 35.90 3.01
219 226 5.651530 TGGACTCGATTGTAGATTGTTCTC 58.348 41.667 0.00 0.00 33.17 2.87
228 250 7.096681 CGATTGTAGATTGTTCTCTCTCGATTG 60.097 40.741 0.00 0.00 33.17 2.67
230 252 6.925211 TGTAGATTGTTCTCTCTCGATTGTT 58.075 36.000 0.00 0.00 33.17 2.83
233 255 6.638610 AGATTGTTCTCTCTCGATTGTTGAT 58.361 36.000 0.00 0.00 0.00 2.57
239 261 7.704047 TGTTCTCTCTCGATTGTTGATTAGATG 59.296 37.037 0.00 0.00 0.00 2.90
242 264 6.867550 TCTCTCGATTGTTGATTAGATGTGT 58.132 36.000 0.00 0.00 0.00 3.72
248 270 6.842780 CGATTGTTGATTAGATGTGTCGATTG 59.157 38.462 0.00 0.00 0.00 2.67
256 402 0.815213 ATGTGTCGATTGGGATGCGG 60.815 55.000 0.00 0.00 0.00 5.69
272 418 2.010582 GCGGTTGCTGTTGGTTTGGA 62.011 55.000 0.00 0.00 38.39 3.53
274 420 1.111277 GGTTGCTGTTGGTTTGGACT 58.889 50.000 0.00 0.00 0.00 3.85
277 423 4.076394 GGTTGCTGTTGGTTTGGACTATA 58.924 43.478 0.00 0.00 0.00 1.31
279 425 5.163652 GGTTGCTGTTGGTTTGGACTATATC 60.164 44.000 0.00 0.00 0.00 1.63
283 429 7.573710 TGCTGTTGGTTTGGACTATATCTATT 58.426 34.615 0.00 0.00 0.00 1.73
284 430 7.715249 TGCTGTTGGTTTGGACTATATCTATTC 59.285 37.037 0.00 0.00 0.00 1.75
285 431 7.173390 GCTGTTGGTTTGGACTATATCTATTCC 59.827 40.741 0.00 0.00 0.00 3.01
287 433 6.697641 TGGTTTGGACTATATCTATTCCCC 57.302 41.667 0.00 0.00 0.00 4.81
288 434 6.399013 TGGTTTGGACTATATCTATTCCCCT 58.601 40.000 0.00 0.00 0.00 4.79
289 435 7.550042 TGGTTTGGACTATATCTATTCCCCTA 58.450 38.462 0.00 0.00 0.00 3.53
291 437 8.887393 GGTTTGGACTATATCTATTCCCCTAAA 58.113 37.037 0.00 0.00 0.00 1.85
295 441 9.907819 TGGACTATATCTATTCCCCTAAAAGAA 57.092 33.333 0.00 0.00 0.00 2.52
322 468 1.825090 TGCCTGCTGGTTGTTGATAG 58.175 50.000 11.69 0.00 35.27 2.08
323 469 1.350684 TGCCTGCTGGTTGTTGATAGA 59.649 47.619 11.69 0.00 35.27 1.98
327 473 3.525537 CTGCTGGTTGTTGATAGATCGT 58.474 45.455 0.00 0.00 0.00 3.73
330 476 4.122776 GCTGGTTGTTGATAGATCGTCAT 58.877 43.478 4.94 0.00 0.00 3.06
334 480 6.273071 TGGTTGTTGATAGATCGTCATAGTG 58.727 40.000 4.94 0.00 0.00 2.74
335 481 5.175856 GGTTGTTGATAGATCGTCATAGTGC 59.824 44.000 4.94 0.00 0.00 4.40
343 527 7.391833 TGATAGATCGTCATAGTGCTCTTGTAT 59.608 37.037 0.00 0.00 0.00 2.29
373 557 2.065899 TGCTGGTAACCTTGTTGCTT 57.934 45.000 0.00 0.00 0.00 3.91
374 558 1.680735 TGCTGGTAACCTTGTTGCTTG 59.319 47.619 0.00 0.00 0.00 4.01
375 559 1.602920 GCTGGTAACCTTGTTGCTTGC 60.603 52.381 0.00 0.00 0.00 4.01
377 561 1.680735 TGGTAACCTTGTTGCTTGCTG 59.319 47.619 0.00 0.00 0.00 4.41
378 562 1.681264 GGTAACCTTGTTGCTTGCTGT 59.319 47.619 0.00 0.00 0.00 4.40
379 563 2.100749 GGTAACCTTGTTGCTTGCTGTT 59.899 45.455 0.00 0.00 0.00 3.16
380 564 3.316868 GGTAACCTTGTTGCTTGCTGTTA 59.683 43.478 0.00 0.00 0.00 2.41
381 565 3.715628 AACCTTGTTGCTTGCTGTTAG 57.284 42.857 0.00 0.00 0.00 2.34
382 566 1.338020 ACCTTGTTGCTTGCTGTTAGC 59.662 47.619 0.00 0.00 42.82 3.09
383 567 1.336240 CCTTGTTGCTTGCTGTTAGCC 60.336 52.381 0.00 0.00 41.51 3.93
384 568 1.610522 CTTGTTGCTTGCTGTTAGCCT 59.389 47.619 0.00 0.00 41.51 4.58
385 569 1.691196 TGTTGCTTGCTGTTAGCCTT 58.309 45.000 0.00 0.00 41.51 4.35
386 570 1.337703 TGTTGCTTGCTGTTAGCCTTG 59.662 47.619 0.00 0.00 41.51 3.61
387 571 1.338020 GTTGCTTGCTGTTAGCCTTGT 59.662 47.619 0.00 0.00 41.51 3.16
388 572 2.552315 GTTGCTTGCTGTTAGCCTTGTA 59.448 45.455 0.00 0.00 41.51 2.41
389 573 2.151202 TGCTTGCTGTTAGCCTTGTAC 58.849 47.619 0.00 0.00 41.51 2.90
426 611 5.072040 TGTGCATCGATTCTACTCTGAAA 57.928 39.130 0.00 0.00 0.00 2.69
479 721 0.742990 TTACCTTCGCATTGCTCCCG 60.743 55.000 7.12 0.00 0.00 5.14
626 873 5.050295 GCCTGGTTTATCTATAGTTTGACGC 60.050 44.000 0.00 0.00 0.00 5.19
810 1360 3.243670 TGAGGCTAGAGATTTCGCTGATG 60.244 47.826 0.00 0.00 0.00 3.07
1134 2071 1.023513 ACCAGCAGCGCTTGATCTTC 61.024 55.000 7.50 0.00 36.40 2.87
1167 2104 4.864334 GAGGATGGCCGCACCCTG 62.864 72.222 9.39 0.00 39.96 4.45
1200 2137 0.193574 TCCAGAAGGAGTCCACCCTT 59.806 55.000 12.86 0.00 46.03 3.95
1227 2164 4.767255 CTCAGGCTCCGTGGTGGC 62.767 72.222 6.42 6.42 37.80 5.01
1242 2179 2.427812 TGGTGGCATGCAGATATTTGTG 59.572 45.455 21.36 0.00 0.00 3.33
1248 2185 4.096833 GGCATGCAGATATTTGTGAAGACA 59.903 41.667 21.36 0.00 0.00 3.41
1254 2191 5.163814 GCAGATATTTGTGAAGACACTCACC 60.164 44.000 0.00 0.00 44.30 4.02
1260 2197 0.249868 TGAAGACACTCACCGGCAAG 60.250 55.000 0.00 0.67 0.00 4.01
1272 2209 1.746615 CGGCAAGACCATCACCCTG 60.747 63.158 0.00 0.00 39.03 4.45
1296 2233 0.895530 TTGAGTCCTCGGACACCATC 59.104 55.000 17.68 7.37 46.76 3.51
1299 2236 1.139095 GTCCTCGGACACCATCGAC 59.861 63.158 11.12 0.00 44.02 4.20
1302 2239 0.736325 CCTCGGACACCATCGACAAC 60.736 60.000 0.00 0.00 0.00 3.32
1305 2242 1.342082 CGGACACCATCGACAACGTC 61.342 60.000 0.00 0.00 40.69 4.34
1311 2248 0.670546 CCATCGACAACGTCAAGGCT 60.671 55.000 0.00 0.00 40.69 4.58
1332 2269 0.985490 AGATCCAGGACAAGGAGGGC 60.985 60.000 0.00 0.00 38.83 5.19
2002 2939 2.030562 CCGGACCAACAGCGTCTT 59.969 61.111 0.00 0.00 0.00 3.01
2393 5836 3.056465 GTCCTTCAATGGAGTCTCGTCTT 60.056 47.826 0.00 0.00 36.69 3.01
2395 5838 3.306364 CCTTCAATGGAGTCTCGTCTTGT 60.306 47.826 0.00 0.00 0.00 3.16
2396 5839 3.303881 TCAATGGAGTCTCGTCTTGTG 57.696 47.619 0.00 0.00 0.00 3.33
2397 5840 1.728971 CAATGGAGTCTCGTCTTGTGC 59.271 52.381 0.00 0.00 0.00 4.57
2400 5843 1.174783 GGAGTCTCGTCTTGTGCCTA 58.825 55.000 0.00 0.00 0.00 3.93
2403 5846 2.423892 GAGTCTCGTCTTGTGCCTATCA 59.576 50.000 0.00 0.00 0.00 2.15
2413 5856 3.301794 TGTGCCTATCATTGCCTGATT 57.698 42.857 4.41 0.00 42.07 2.57
2465 5918 5.576774 TGCAGTGTCATCGTTTGTATCTTAG 59.423 40.000 0.00 0.00 0.00 2.18
2476 5929 6.807230 TCGTTTGTATCTTAGAACTTCTGCTC 59.193 38.462 1.17 0.00 0.00 4.26
2517 5972 6.183360 GGTGAACTATGAATAAGTGAGCCCTA 60.183 42.308 0.00 0.00 0.00 3.53
2570 6120 5.106475 TGTTGTGTTGTACTGTGGTTTCTTC 60.106 40.000 0.00 0.00 0.00 2.87
2581 6131 4.714632 TGTGGTTTCTTCCGATCTTTCTT 58.285 39.130 0.00 0.00 0.00 2.52
2583 6133 5.932303 TGTGGTTTCTTCCGATCTTTCTTAG 59.068 40.000 0.00 0.00 0.00 2.18
2584 6134 4.935808 TGGTTTCTTCCGATCTTTCTTAGC 59.064 41.667 0.00 0.00 0.00 3.09
2585 6135 4.935808 GGTTTCTTCCGATCTTTCTTAGCA 59.064 41.667 0.00 0.00 0.00 3.49
2586 6136 5.586643 GGTTTCTTCCGATCTTTCTTAGCAT 59.413 40.000 0.00 0.00 0.00 3.79
2590 6140 8.786826 TTCTTCCGATCTTTCTTAGCATTTTA 57.213 30.769 0.00 0.00 0.00 1.52
2591 6141 8.197988 TCTTCCGATCTTTCTTAGCATTTTAC 57.802 34.615 0.00 0.00 0.00 2.01
2598 6150 9.120538 GATCTTTCTTAGCATTTTACCCACATA 57.879 33.333 0.00 0.00 0.00 2.29
2613 6165 8.815565 TTACCCACATATTTTCTAATTGCTCA 57.184 30.769 0.00 0.00 0.00 4.26
2614 6166 7.100458 ACCCACATATTTTCTAATTGCTCAC 57.900 36.000 0.00 0.00 0.00 3.51
2615 6167 6.891908 ACCCACATATTTTCTAATTGCTCACT 59.108 34.615 0.00 0.00 0.00 3.41
2616 6168 7.148018 ACCCACATATTTTCTAATTGCTCACTG 60.148 37.037 0.00 0.00 0.00 3.66
2642 6194 9.343539 GGTAAAAATTGATTACCTCTATGCTCT 57.656 33.333 19.21 0.00 45.75 4.09
2649 6201 7.710676 TGATTACCTCTATGCTCTATCCTTC 57.289 40.000 0.00 0.00 0.00 3.46
2650 6202 7.474445 TGATTACCTCTATGCTCTATCCTTCT 58.526 38.462 0.00 0.00 0.00 2.85
2651 6203 7.395772 TGATTACCTCTATGCTCTATCCTTCTG 59.604 40.741 0.00 0.00 0.00 3.02
2652 6204 5.332106 ACCTCTATGCTCTATCCTTCTGA 57.668 43.478 0.00 0.00 0.00 3.27
2653 6205 5.902760 ACCTCTATGCTCTATCCTTCTGAT 58.097 41.667 0.00 0.00 37.49 2.90
2654 6206 7.038531 ACCTCTATGCTCTATCCTTCTGATA 57.961 40.000 0.00 0.00 34.76 2.15
2671 6316 7.918033 CCTTCTGATATGTGTGTACTTCTGTAG 59.082 40.741 0.00 0.00 0.00 2.74
2672 6317 8.575649 TTCTGATATGTGTGTACTTCTGTAGA 57.424 34.615 0.00 0.00 0.00 2.59
2673 6318 8.575649 TCTGATATGTGTGTACTTCTGTAGAA 57.424 34.615 0.00 0.00 0.00 2.10
2675 6320 9.457110 CTGATATGTGTGTACTTCTGTAGAATC 57.543 37.037 0.00 0.00 33.01 2.52
2676 6321 8.414003 TGATATGTGTGTACTTCTGTAGAATCC 58.586 37.037 0.00 0.00 33.01 3.01
2677 6322 6.605471 ATGTGTGTACTTCTGTAGAATCCA 57.395 37.500 0.00 0.00 33.01 3.41
2679 6324 7.004555 TGTGTGTACTTCTGTAGAATCCATT 57.995 36.000 0.00 0.00 33.01 3.16
2680 6325 7.450074 TGTGTGTACTTCTGTAGAATCCATTT 58.550 34.615 0.00 0.00 33.01 2.32
2681 6326 7.387673 TGTGTGTACTTCTGTAGAATCCATTTG 59.612 37.037 0.00 0.00 33.01 2.32
2683 6328 8.321353 TGTGTACTTCTGTAGAATCCATTTGAT 58.679 33.333 0.00 0.00 33.01 2.57
2684 6329 9.817809 GTGTACTTCTGTAGAATCCATTTGATA 57.182 33.333 0.00 0.00 33.01 2.15
2685 6330 9.817809 TGTACTTCTGTAGAATCCATTTGATAC 57.182 33.333 0.00 0.00 33.01 2.24
2740 6417 1.270041 TGCTGCACAGTCGTGTTCATA 60.270 47.619 0.00 0.00 45.50 2.15
2747 6809 2.369870 GTCGTGTTCATACGGCTGG 58.630 57.895 0.00 0.00 44.63 4.85
2752 6814 2.000447 GTGTTCATACGGCTGGTCTTC 59.000 52.381 0.00 0.00 0.00 2.87
2754 6816 2.301870 TGTTCATACGGCTGGTCTTCTT 59.698 45.455 0.00 0.00 0.00 2.52
2755 6817 2.672961 TCATACGGCTGGTCTTCTTG 57.327 50.000 0.00 0.00 0.00 3.02
2756 6818 1.899814 TCATACGGCTGGTCTTCTTGT 59.100 47.619 0.00 0.00 0.00 3.16
2757 6819 2.002586 CATACGGCTGGTCTTCTTGTG 58.997 52.381 0.00 0.00 0.00 3.33
2763 6825 0.954452 CTGGTCTTCTTGTGTTGGCC 59.046 55.000 0.00 0.00 0.00 5.36
2772 6834 3.364441 GTGTTGGCCGCATGCTGA 61.364 61.111 17.13 0.00 40.92 4.26
2791 6853 2.507992 CCGTGCGGCTCTCTTCAG 60.508 66.667 0.00 0.00 0.00 3.02
2792 6854 2.568612 CGTGCGGCTCTCTTCAGA 59.431 61.111 0.00 0.00 0.00 3.27
2793 6855 1.140589 CGTGCGGCTCTCTTCAGAT 59.859 57.895 0.00 0.00 0.00 2.90
2794 6856 1.144565 CGTGCGGCTCTCTTCAGATG 61.145 60.000 0.00 0.00 0.00 2.90
2795 6857 0.108424 GTGCGGCTCTCTTCAGATGT 60.108 55.000 0.00 0.00 0.00 3.06
2827 6953 1.344953 ATCTTCCGCAGCCCATGGTA 61.345 55.000 11.73 0.00 0.00 3.25
2829 6955 0.396435 CTTCCGCAGCCCATGGTATA 59.604 55.000 11.73 0.00 0.00 1.47
2852 6978 2.259818 CTCTCGTGGAAGCGCTGT 59.740 61.111 12.58 0.03 0.00 4.40
2863 6989 1.097547 AAGCGCTGTTGTTGCAGAGT 61.098 50.000 12.58 0.00 38.32 3.24
2871 6997 1.436195 TTGTTGCAGAGTGCCGTGTC 61.436 55.000 0.00 0.00 44.23 3.67
2880 7006 3.542676 TGCCGTGTCCGACAACCT 61.543 61.111 1.88 0.00 35.63 3.50
2903 7030 2.024918 CCAAAGACGTTGCTGCTGT 58.975 52.632 0.00 0.00 35.74 4.40
2953 7083 4.007644 CGGTGCTGTGAGGGCAGA 62.008 66.667 0.00 0.00 40.54 4.26
2961 7144 1.375908 GTGAGGGCAGATGTTCGCA 60.376 57.895 0.00 0.00 0.00 5.10
2979 7162 1.597195 GCAGTCGTTGTTGTGTCATCA 59.403 47.619 0.00 0.00 0.00 3.07
2999 7182 0.890996 CAGGTGTTCTGGAGTTGCCC 60.891 60.000 0.00 0.00 39.76 5.36
3020 7270 2.304751 ACGGACACGAGTTGAAGTTT 57.695 45.000 0.00 0.00 44.60 2.66
3096 7346 3.681835 GACTGCTCGTGACCCGGT 61.682 66.667 0.00 0.00 37.11 5.28
3097 7347 3.916392 GACTGCTCGTGACCCGGTG 62.916 68.421 0.00 0.00 37.11 4.94
3106 7356 0.321653 GTGACCCGGTGCTGATCTTT 60.322 55.000 0.00 0.00 0.00 2.52
3110 7360 1.369091 CCCGGTGCTGATCTTTTCCG 61.369 60.000 0.00 11.05 38.05 4.30
3112 7362 1.656652 CGGTGCTGATCTTTTCCGAT 58.343 50.000 12.13 0.00 40.29 4.18
3113 7363 1.328680 CGGTGCTGATCTTTTCCGATG 59.671 52.381 12.13 0.00 40.29 3.84
3134 7384 4.227134 AGCCAGCCGATGCGTAGG 62.227 66.667 0.00 0.00 44.33 3.18
3147 7397 1.347221 CGTAGGCCGCGCTAAAAAG 59.653 57.895 5.56 0.00 0.00 2.27
3179 7433 4.690748 CACATGATAGTTCCGTTGTTGTCT 59.309 41.667 0.00 0.00 0.00 3.41
3180 7434 4.690748 ACATGATAGTTCCGTTGTTGTCTG 59.309 41.667 0.00 0.00 0.00 3.51
3190 7444 3.242739 CCGTTGTTGTCTGAAGTTCCAAG 60.243 47.826 0.00 0.00 0.00 3.61
3231 7485 8.703604 TTTCGGACAATGTAATTTTTCACAAA 57.296 26.923 0.00 0.00 31.22 2.83
3295 7549 3.057806 AGGGCTATGCAAACGTGTAAAAC 60.058 43.478 0.00 0.00 0.00 2.43
3305 7559 3.428746 ACGTGTAAAACTTGCATTGCA 57.571 38.095 7.38 7.38 36.47 4.08
3331 7585 8.764558 ACAACCCATATGTCACTGTTAACTATA 58.235 33.333 7.22 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.300931 CGCACATGACGATAGGGGG 60.301 63.158 0.00 0.00 43.77 5.40
17 18 1.956170 GCGCACATGACGATAGGGG 60.956 63.158 15.30 0.00 43.77 4.79
18 19 2.302952 CGCGCACATGACGATAGGG 61.303 63.158 8.75 1.27 43.77 3.53
19 20 2.932083 GCGCGCACATGACGATAGG 61.932 63.158 29.10 4.07 43.77 2.57
20 21 2.541437 GCGCGCACATGACGATAG 59.459 61.111 29.10 7.69 46.19 2.08
21 22 2.959599 GGCGCGCACATGACGATA 60.960 61.111 34.42 0.00 0.00 2.92
42 43 3.232662 GTCCTACTCCTAGGGACAATCC 58.767 54.545 9.46 0.00 46.14 3.01
47 48 3.055328 AGGTAGTCCTACTCCTAGGGAC 58.945 54.545 9.46 7.96 46.94 4.46
48 49 3.451677 AGGTAGTCCTACTCCTAGGGA 57.548 52.381 9.46 0.00 43.12 4.20
49 50 3.462579 TCAAGGTAGTCCTACTCCTAGGG 59.537 52.174 9.46 2.03 44.35 3.53
50 51 4.463070 GTCAAGGTAGTCCTACTCCTAGG 58.537 52.174 0.82 0.82 44.35 3.02
51 52 4.166531 AGGTCAAGGTAGTCCTACTCCTAG 59.833 50.000 4.58 0.00 44.35 3.02
52 53 4.117632 AGGTCAAGGTAGTCCTACTCCTA 58.882 47.826 4.58 0.00 44.35 2.94
53 54 2.927685 AGGTCAAGGTAGTCCTACTCCT 59.072 50.000 4.58 3.35 44.35 3.69
54 55 3.385314 AGGTCAAGGTAGTCCTACTCC 57.615 52.381 4.58 1.52 44.35 3.85
55 56 4.342359 TCAAGGTCAAGGTAGTCCTACTC 58.658 47.826 4.58 0.00 44.35 2.59
56 57 4.399483 TCAAGGTCAAGGTAGTCCTACT 57.601 45.455 4.58 0.00 44.35 2.57
57 58 4.710375 TGATCAAGGTCAAGGTAGTCCTAC 59.290 45.833 0.00 0.00 44.35 3.18
58 59 4.942944 TGATCAAGGTCAAGGTAGTCCTA 58.057 43.478 0.00 0.00 44.35 2.94
60 61 4.553330 TTGATCAAGGTCAAGGTAGTCC 57.447 45.455 3.38 0.00 33.41 3.85
61 62 5.940470 ACAATTGATCAAGGTCAAGGTAGTC 59.060 40.000 13.59 0.00 41.05 2.59
62 63 5.880901 ACAATTGATCAAGGTCAAGGTAGT 58.119 37.500 13.59 0.00 41.05 2.73
63 64 6.207417 ACAACAATTGATCAAGGTCAAGGTAG 59.793 38.462 13.59 0.00 41.05 3.18
64 65 6.068010 ACAACAATTGATCAAGGTCAAGGTA 58.932 36.000 13.59 0.00 41.05 3.08
65 66 4.895297 ACAACAATTGATCAAGGTCAAGGT 59.105 37.500 13.59 8.43 41.05 3.50
66 67 5.458041 ACAACAATTGATCAAGGTCAAGG 57.542 39.130 13.59 7.91 41.05 3.61
67 68 5.693104 CCAACAACAATTGATCAAGGTCAAG 59.307 40.000 13.59 10.22 41.05 3.02
68 69 5.128499 ACCAACAACAATTGATCAAGGTCAA 59.872 36.000 13.59 0.00 41.88 3.18
69 70 4.648762 ACCAACAACAATTGATCAAGGTCA 59.351 37.500 13.59 0.00 0.00 4.02
70 71 5.200368 ACCAACAACAATTGATCAAGGTC 57.800 39.130 13.59 0.00 0.00 3.85
71 72 5.453198 GGAACCAACAACAATTGATCAAGGT 60.453 40.000 13.59 11.54 0.00 3.50
72 73 4.990426 GGAACCAACAACAATTGATCAAGG 59.010 41.667 13.59 10.90 0.00 3.61
123 124 1.606737 GCCCGCAGATCTACTCAATCC 60.607 57.143 0.00 0.00 0.00 3.01
125 126 0.394565 GGCCCGCAGATCTACTCAAT 59.605 55.000 0.00 0.00 0.00 2.57
126 127 1.823295 GGCCCGCAGATCTACTCAA 59.177 57.895 0.00 0.00 0.00 3.02
127 128 2.490148 CGGCCCGCAGATCTACTCA 61.490 63.158 0.00 0.00 0.00 3.41
168 169 1.296056 CGACTAACCAAACCGGCAGG 61.296 60.000 0.00 0.00 45.13 4.85
170 171 0.320073 CTCGACTAACCAAACCGGCA 60.320 55.000 0.00 0.00 39.03 5.69
171 172 1.017701 CCTCGACTAACCAAACCGGC 61.018 60.000 0.00 0.00 39.03 6.13
172 173 0.319405 ACCTCGACTAACCAAACCGG 59.681 55.000 0.00 0.00 42.50 5.28
173 174 1.796459 CAACCTCGACTAACCAAACCG 59.204 52.381 0.00 0.00 0.00 4.44
178 185 2.901192 TCCAATCAACCTCGACTAACCA 59.099 45.455 0.00 0.00 0.00 3.67
197 204 5.897050 AGAGAACAATCTACAATCGAGTCC 58.103 41.667 0.00 0.00 35.54 3.85
219 226 6.075152 CGACACATCTAATCAACAATCGAGAG 60.075 42.308 0.00 0.00 0.00 3.20
228 250 5.116180 TCCCAATCGACACATCTAATCAAC 58.884 41.667 0.00 0.00 0.00 3.18
230 252 5.299949 CATCCCAATCGACACATCTAATCA 58.700 41.667 0.00 0.00 0.00 2.57
233 255 3.466836 GCATCCCAATCGACACATCTAA 58.533 45.455 0.00 0.00 0.00 2.10
239 261 1.024579 AACCGCATCCCAATCGACAC 61.025 55.000 0.00 0.00 0.00 3.67
242 264 2.112198 GCAACCGCATCCCAATCGA 61.112 57.895 0.00 0.00 38.36 3.59
248 270 2.568090 CAACAGCAACCGCATCCC 59.432 61.111 0.00 0.00 42.27 3.85
256 402 5.648092 AGATATAGTCCAAACCAACAGCAAC 59.352 40.000 0.00 0.00 0.00 4.17
283 429 7.060421 CAGGCATAATTACTTCTTTTAGGGGA 58.940 38.462 0.00 0.00 0.00 4.81
284 430 6.239036 GCAGGCATAATTACTTCTTTTAGGGG 60.239 42.308 0.00 0.00 0.00 4.79
285 431 6.547510 AGCAGGCATAATTACTTCTTTTAGGG 59.452 38.462 0.00 0.00 0.00 3.53
287 433 7.067494 ACCAGCAGGCATAATTACTTCTTTTAG 59.933 37.037 0.00 0.00 39.06 1.85
288 434 6.889722 ACCAGCAGGCATAATTACTTCTTTTA 59.110 34.615 0.00 0.00 39.06 1.52
289 435 5.716703 ACCAGCAGGCATAATTACTTCTTTT 59.283 36.000 0.00 0.00 39.06 2.27
291 437 4.860022 ACCAGCAGGCATAATTACTTCTT 58.140 39.130 0.00 0.00 39.06 2.52
292 438 4.510167 ACCAGCAGGCATAATTACTTCT 57.490 40.909 0.00 0.00 39.06 2.85
293 439 4.399303 ACAACCAGCAGGCATAATTACTTC 59.601 41.667 0.00 0.00 39.06 3.01
295 441 3.968265 ACAACCAGCAGGCATAATTACT 58.032 40.909 0.00 0.00 39.06 2.24
296 442 4.157656 TCAACAACCAGCAGGCATAATTAC 59.842 41.667 0.00 0.00 39.06 1.89
297 443 4.339748 TCAACAACCAGCAGGCATAATTA 58.660 39.130 0.00 0.00 39.06 1.40
298 444 3.164268 TCAACAACCAGCAGGCATAATT 58.836 40.909 0.00 0.00 39.06 1.40
299 445 2.806434 TCAACAACCAGCAGGCATAAT 58.194 42.857 0.00 0.00 39.06 1.28
300 446 2.284754 TCAACAACCAGCAGGCATAA 57.715 45.000 0.00 0.00 39.06 1.90
305 451 2.868583 CGATCTATCAACAACCAGCAGG 59.131 50.000 0.00 0.00 42.21 4.85
322 468 4.384247 GCATACAAGAGCACTATGACGATC 59.616 45.833 0.00 0.00 0.00 3.69
323 469 4.302455 GCATACAAGAGCACTATGACGAT 58.698 43.478 0.00 0.00 0.00 3.73
327 473 3.742327 GCAGGCATACAAGAGCACTATGA 60.742 47.826 0.00 0.00 0.00 2.15
330 476 1.554617 TGCAGGCATACAAGAGCACTA 59.445 47.619 0.00 0.00 0.00 2.74
334 480 3.184541 CAAATTGCAGGCATACAAGAGC 58.815 45.455 0.00 0.00 0.00 4.09
335 481 3.184541 GCAAATTGCAGGCATACAAGAG 58.815 45.455 13.73 0.00 44.26 2.85
373 557 4.566004 CAACTAGTACAAGGCTAACAGCA 58.434 43.478 0.00 0.00 44.75 4.41
374 558 3.371285 GCAACTAGTACAAGGCTAACAGC 59.629 47.826 0.00 0.00 41.46 4.40
375 559 4.822026 AGCAACTAGTACAAGGCTAACAG 58.178 43.478 0.00 0.00 0.00 3.16
377 561 4.995487 ACAAGCAACTAGTACAAGGCTAAC 59.005 41.667 0.00 0.00 0.00 2.34
378 562 5.223449 ACAAGCAACTAGTACAAGGCTAA 57.777 39.130 0.00 0.00 0.00 3.09
379 563 4.884668 ACAAGCAACTAGTACAAGGCTA 57.115 40.909 0.00 0.00 0.00 3.93
380 564 3.771577 ACAAGCAACTAGTACAAGGCT 57.228 42.857 0.00 0.00 0.00 4.58
381 565 3.371285 GCTACAAGCAACTAGTACAAGGC 59.629 47.826 0.00 0.00 41.89 4.35
382 566 4.627467 CAGCTACAAGCAACTAGTACAAGG 59.373 45.833 0.00 0.00 45.56 3.61
383 567 5.119279 CACAGCTACAAGCAACTAGTACAAG 59.881 44.000 0.00 0.00 45.56 3.16
384 568 4.988540 CACAGCTACAAGCAACTAGTACAA 59.011 41.667 0.00 0.00 45.56 2.41
385 569 4.556233 CACAGCTACAAGCAACTAGTACA 58.444 43.478 0.00 0.00 45.56 2.90
386 570 3.368236 GCACAGCTACAAGCAACTAGTAC 59.632 47.826 0.00 0.00 45.56 2.73
387 571 3.006430 TGCACAGCTACAAGCAACTAGTA 59.994 43.478 0.00 0.00 45.56 1.82
388 572 2.224281 TGCACAGCTACAAGCAACTAGT 60.224 45.455 1.22 0.00 45.56 2.57
389 573 2.416747 TGCACAGCTACAAGCAACTAG 58.583 47.619 1.22 0.00 45.56 2.57
435 620 5.853810 CAGGTCAACGATAATATCAGACTCG 59.146 44.000 13.41 0.00 35.56 4.18
489 731 5.695816 CAGATCTACAAGCAATCTTAGGCTC 59.304 44.000 0.00 0.00 40.01 4.70
529 773 8.600625 TGCAGTGCTAAATTTTAGTATAACTCG 58.399 33.333 17.60 10.51 0.00 4.18
626 873 6.750501 CACAAGAATAATGGAAATCTGCAGTG 59.249 38.462 14.67 0.81 0.00 3.66
748 1282 3.315191 TCAGTTAAACAGAACAAGCTGGC 59.685 43.478 0.00 0.00 40.20 4.85
966 1528 4.357918 AAGCACACAGAACCAGAGTTAT 57.642 40.909 0.00 0.00 35.94 1.89
1125 2062 0.098376 GCTTGCCAGCGAAGATCAAG 59.902 55.000 0.00 0.00 35.91 3.02
1126 2063 2.174334 GCTTGCCAGCGAAGATCAA 58.826 52.632 0.00 0.00 35.91 2.57
1167 2104 3.265791 CTTCTGGATGTTGTAGTCTGCC 58.734 50.000 0.00 0.00 0.00 4.85
1170 2107 4.421131 ACTCCTTCTGGATGTTGTAGTCT 58.579 43.478 0.00 0.00 42.29 3.24
1209 2146 4.767255 CCACCACGGAGCCTGAGC 62.767 72.222 0.00 0.00 36.56 4.26
1227 2164 6.093082 TGAGTGTCTTCACAAATATCTGCATG 59.907 38.462 0.00 0.00 46.01 4.06
1242 2179 0.033504 TCTTGCCGGTGAGTGTCTTC 59.966 55.000 1.90 0.00 0.00 2.87
1248 2185 1.296715 GATGGTCTTGCCGGTGAGT 59.703 57.895 1.90 0.00 41.21 3.41
1254 2191 1.746615 CAGGGTGATGGTCTTGCCG 60.747 63.158 0.00 0.00 41.21 5.69
1287 2224 0.319211 TGACGTTGTCGATGGTGTCC 60.319 55.000 0.00 0.00 40.62 4.02
1296 2233 2.060326 TCTTAGCCTTGACGTTGTCG 57.940 50.000 0.00 0.00 43.34 4.35
1299 2236 2.932614 CTGGATCTTAGCCTTGACGTTG 59.067 50.000 0.00 0.00 0.00 4.10
1302 2239 1.757118 TCCTGGATCTTAGCCTTGACG 59.243 52.381 0.00 0.00 0.00 4.35
1305 2242 3.539604 CTTGTCCTGGATCTTAGCCTTG 58.460 50.000 0.00 0.00 0.00 3.61
1311 2248 2.764269 CCCTCCTTGTCCTGGATCTTA 58.236 52.381 0.00 0.00 32.56 2.10
2044 3209 5.532779 GGATTCCTTCTGGATGTTGTAATCC 59.467 44.000 0.00 0.00 45.57 3.01
2161 5209 3.822735 CCTTCACATTGTCAATGGTGTCT 59.177 43.478 25.59 5.32 43.21 3.41
2403 5846 5.987347 CAGAAACAAAGACAAATCAGGCAAT 59.013 36.000 0.00 0.00 0.00 3.56
2413 5856 5.521010 CAGTACGGTACAGAAACAAAGACAA 59.479 40.000 19.62 0.00 0.00 3.18
2449 5902 7.276658 AGCAGAAGTTCTAAGATACAAACGATG 59.723 37.037 4.74 0.00 0.00 3.84
2465 5918 2.605094 TGCACACGAGCAGAAGTTC 58.395 52.632 0.00 0.00 40.11 3.01
2476 5929 2.050714 CCAAAGCTGCTGCACACG 60.051 61.111 18.42 3.10 42.74 4.49
2517 5972 6.008331 ACATCATGGATCATGGATCGAATTT 58.992 36.000 7.88 0.00 41.66 1.82
2570 6120 5.588648 TGGGTAAAATGCTAAGAAAGATCGG 59.411 40.000 0.00 0.00 0.00 4.18
2590 6140 6.891908 AGTGAGCAATTAGAAAATATGTGGGT 59.108 34.615 0.00 0.00 0.00 4.51
2591 6141 7.198390 CAGTGAGCAATTAGAAAATATGTGGG 58.802 38.462 0.00 0.00 0.00 4.61
2605 6157 9.423061 GTAATCAATTTTTACCAGTGAGCAATT 57.577 29.630 0.00 0.00 0.00 2.32
2606 6158 8.034804 GGTAATCAATTTTTACCAGTGAGCAAT 58.965 33.333 16.90 0.00 45.24 3.56
2616 6168 9.343539 AGAGCATAGAGGTAATCAATTTTTACC 57.656 33.333 15.07 15.07 45.93 2.85
2623 6175 8.677870 AAGGATAGAGCATAGAGGTAATCAAT 57.322 34.615 0.00 0.00 0.00 2.57
2636 6188 6.269538 ACACACATATCAGAAGGATAGAGCAT 59.730 38.462 0.00 0.00 41.64 3.79
2642 6194 8.633561 CAGAAGTACACACATATCAGAAGGATA 58.366 37.037 0.00 0.00 42.50 2.59
2643 6195 7.124901 ACAGAAGTACACACATATCAGAAGGAT 59.875 37.037 0.00 0.00 40.14 3.24
2649 6201 9.457110 GATTCTACAGAAGTACACACATATCAG 57.543 37.037 0.00 0.00 37.48 2.90
2650 6202 8.414003 GGATTCTACAGAAGTACACACATATCA 58.586 37.037 0.00 0.00 37.48 2.15
2651 6203 8.414003 TGGATTCTACAGAAGTACACACATATC 58.586 37.037 0.00 0.00 37.48 1.63
2652 6204 8.306313 TGGATTCTACAGAAGTACACACATAT 57.694 34.615 0.00 0.00 37.48 1.78
2653 6205 7.712204 TGGATTCTACAGAAGTACACACATA 57.288 36.000 0.00 0.00 37.48 2.29
2654 6206 6.605471 TGGATTCTACAGAAGTACACACAT 57.395 37.500 0.00 0.00 37.48 3.21
2684 6329 9.893305 CCACGTATCTTCAAAGAAAATTTAAGT 57.107 29.630 0.00 0.00 38.77 2.24
2689 6334 7.094762 GGACTCCACGTATCTTCAAAGAAAATT 60.095 37.037 0.00 0.00 38.77 1.82
2690 6335 6.371825 GGACTCCACGTATCTTCAAAGAAAAT 59.628 38.462 0.00 0.00 38.77 1.82
2695 6340 4.177026 CAGGACTCCACGTATCTTCAAAG 58.823 47.826 0.00 0.00 0.00 2.77
2696 6341 3.576982 ACAGGACTCCACGTATCTTCAAA 59.423 43.478 0.00 0.00 0.00 2.69
2697 6342 3.056821 CACAGGACTCCACGTATCTTCAA 60.057 47.826 0.00 0.00 0.00 2.69
2698 6343 2.492088 CACAGGACTCCACGTATCTTCA 59.508 50.000 0.00 0.00 0.00 3.02
2699 6344 2.492484 ACACAGGACTCCACGTATCTTC 59.508 50.000 0.00 0.00 0.00 2.87
2700 6345 2.231478 CACACAGGACTCCACGTATCTT 59.769 50.000 0.00 0.00 0.00 2.40
2701 6346 1.819288 CACACAGGACTCCACGTATCT 59.181 52.381 0.00 0.00 0.00 1.98
2702 6347 1.736032 GCACACAGGACTCCACGTATC 60.736 57.143 0.00 0.00 0.00 2.24
2731 6377 0.108804 AGACCAGCCGTATGAACACG 60.109 55.000 0.00 0.00 41.59 4.49
2740 6417 0.180406 AACACAAGAAGACCAGCCGT 59.820 50.000 0.00 0.00 0.00 5.68
2747 6809 1.282875 GCGGCCAACACAAGAAGAC 59.717 57.895 2.24 0.00 0.00 3.01
2752 6814 2.431260 GCATGCGGCCAACACAAG 60.431 61.111 0.00 0.00 36.11 3.16
2754 6816 3.672447 CAGCATGCGGCCAACACA 61.672 61.111 13.01 0.00 46.50 3.72
2755 6817 3.332493 CTCAGCATGCGGCCAACAC 62.332 63.158 13.45 0.00 46.50 3.32
2756 6818 3.057548 CTCAGCATGCGGCCAACA 61.058 61.111 13.45 0.00 46.50 3.33
2757 6819 4.487412 GCTCAGCATGCGGCCAAC 62.487 66.667 13.45 0.00 46.50 3.77
2776 6838 0.108424 ACATCTGAAGAGAGCCGCAC 60.108 55.000 0.00 0.00 0.00 5.34
2778 6840 0.529555 GGACATCTGAAGAGAGCCGC 60.530 60.000 0.00 0.00 0.00 6.53
2781 6843 3.981211 GATGAGGACATCTGAAGAGAGC 58.019 50.000 0.00 0.00 46.47 4.09
2792 6854 3.390639 GGAAGATGAGTGGATGAGGACAT 59.609 47.826 0.00 0.00 39.67 3.06
2793 6855 2.768527 GGAAGATGAGTGGATGAGGACA 59.231 50.000 0.00 0.00 0.00 4.02
2794 6856 2.223923 CGGAAGATGAGTGGATGAGGAC 60.224 54.545 0.00 0.00 0.00 3.85
2795 6857 2.034878 CGGAAGATGAGTGGATGAGGA 58.965 52.381 0.00 0.00 0.00 3.71
2808 6891 1.344953 TACCATGGGCTGCGGAAGAT 61.345 55.000 18.09 0.00 0.00 2.40
2827 6953 0.460311 CTTCCACGAGAGGGCGTTAT 59.540 55.000 0.00 0.00 43.59 1.89
2829 6955 2.657237 CTTCCACGAGAGGGCGTT 59.343 61.111 0.00 0.00 43.59 4.84
2871 6997 0.593128 CTTTGGCTGAAGGTTGTCGG 59.407 55.000 0.00 0.00 0.00 4.79
2880 7006 0.662619 CAGCAACGTCTTTGGCTGAA 59.337 50.000 16.25 0.00 39.65 3.02
2903 7030 1.202746 TGCAGCACCACATGTTCACTA 60.203 47.619 0.00 0.00 0.00 2.74
2942 7072 1.375908 GCGAACATCTGCCCTCACA 60.376 57.895 0.00 0.00 0.00 3.58
2950 7080 1.139989 ACAACGACTGCGAACATCTG 58.860 50.000 0.00 0.00 41.64 2.90
2951 7081 1.526887 CAACAACGACTGCGAACATCT 59.473 47.619 0.00 0.00 41.64 2.90
2953 7083 1.003972 CACAACAACGACTGCGAACAT 60.004 47.619 0.00 0.00 41.64 2.71
2979 7162 0.179018 GGCAACTCCAGAACACCTGT 60.179 55.000 0.00 0.00 41.33 4.00
2999 7182 2.701073 ACTTCAACTCGTGTCCGTAG 57.299 50.000 0.00 0.00 35.01 3.51
3020 7270 7.487484 TGCAATTGTAACAAGAATCTTGTTGA 58.513 30.769 37.33 26.78 42.05 3.18
3034 7284 6.529829 TCTGTTTGACTTGTTGCAATTGTAAC 59.470 34.615 26.67 26.67 40.37 2.50
3036 7286 6.094742 TCTCTGTTTGACTTGTTGCAATTGTA 59.905 34.615 0.59 0.00 0.00 2.41
3096 7346 4.141233 TGATCATCGGAAAAGATCAGCA 57.859 40.909 13.64 0.00 42.17 4.41
3099 7349 3.118298 TGGCTGATCATCGGAAAAGATCA 60.118 43.478 15.61 15.61 44.11 2.92
3106 7356 1.146930 GGCTGGCTGATCATCGGAA 59.853 57.895 0.00 0.00 0.00 4.30
3110 7360 1.575576 GCATCGGCTGGCTGATCATC 61.576 60.000 13.28 0.00 39.80 2.92
3112 7362 2.203112 GCATCGGCTGGCTGATCA 60.203 61.111 13.28 0.00 39.80 2.92
3113 7363 2.699576 TACGCATCGGCTGGCTGATC 62.700 60.000 13.28 8.30 39.80 2.92
3134 7384 3.334272 ACATTATCTTTTTAGCGCGGC 57.666 42.857 8.83 0.00 0.00 6.53
3147 7397 7.715265 ACGGAACTATCATGTGAACATTATC 57.285 36.000 0.00 0.00 33.61 1.75
3168 7422 2.285083 TGGAACTTCAGACAACAACGG 58.715 47.619 0.00 0.00 0.00 4.44
3190 7444 6.101332 TGTCCGAAATACTACACACCAATAC 58.899 40.000 0.00 0.00 0.00 1.89
3204 7458 9.967346 TTGTGAAAAATTACATTGTCCGAAATA 57.033 25.926 0.00 0.00 0.00 1.40
3231 7485 3.626930 TGTACCTTGGAAGTTTTGCACT 58.373 40.909 0.00 0.00 37.30 4.40
3270 7524 1.340017 ACACGTTTGCATAGCCCTGAT 60.340 47.619 0.00 0.00 0.00 2.90
3272 7526 1.732941 TACACGTTTGCATAGCCCTG 58.267 50.000 0.00 0.00 0.00 4.45
3285 7539 3.112580 GTGCAATGCAAGTTTTACACGT 58.887 40.909 10.44 0.00 41.47 4.49
3295 7549 3.191669 CATATGGGTTGTGCAATGCAAG 58.808 45.455 10.44 0.00 41.47 4.01
3305 7559 5.876357 AGTTAACAGTGACATATGGGTTGT 58.124 37.500 8.61 3.41 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.