Multiple sequence alignment - TraesCS7A01G453200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G453200 | chr7A | 100.000 | 4422 | 0 | 0 | 1 | 4422 | 647294921 | 647299342 | 0.000000e+00 | 8167 |
1 | TraesCS7A01G453200 | chr7D | 96.662 | 2337 | 72 | 5 | 1538 | 3873 | 562121898 | 562124229 | 0.000000e+00 | 3879 |
2 | TraesCS7A01G453200 | chr7D | 90.472 | 1123 | 48 | 9 | 333 | 1415 | 562120797 | 562121900 | 0.000000e+00 | 1426 |
3 | TraesCS7A01G453200 | chr7D | 93.548 | 248 | 10 | 5 | 8 | 253 | 562120244 | 562120487 | 9.040000e-97 | 364 |
4 | TraesCS7A01G453200 | chr7D | 95.536 | 112 | 5 | 0 | 4161 | 4272 | 382742536 | 382742647 | 3.510000e-41 | 180 |
5 | TraesCS7A01G453200 | chr7D | 93.333 | 120 | 4 | 3 | 4154 | 4273 | 568184368 | 568184253 | 1.630000e-39 | 174 |
6 | TraesCS7A01G453200 | chr7D | 89.706 | 136 | 8 | 2 | 4162 | 4291 | 545698752 | 545698887 | 7.610000e-38 | 169 |
7 | TraesCS7A01G453200 | chr7B | 95.336 | 1844 | 74 | 8 | 2253 | 4094 | 611720336 | 611722169 | 0.000000e+00 | 2918 |
8 | TraesCS7A01G453200 | chr7B | 89.326 | 1321 | 97 | 22 | 30 | 1326 | 611718174 | 611719474 | 0.000000e+00 | 1618 |
9 | TraesCS7A01G453200 | chr7B | 95.410 | 719 | 28 | 2 | 1538 | 2256 | 611719543 | 611720256 | 0.000000e+00 | 1140 |
10 | TraesCS7A01G453200 | chr7B | 95.683 | 139 | 4 | 1 | 1402 | 1538 | 668203182 | 668203320 | 5.760000e-54 | 222 |
11 | TraesCS7A01G453200 | chr7B | 91.503 | 153 | 12 | 1 | 4267 | 4418 | 611722564 | 611722716 | 4.480000e-50 | 209 |
12 | TraesCS7A01G453200 | chr3D | 81.216 | 1858 | 245 | 64 | 1679 | 3476 | 324386570 | 324388383 | 0.000000e+00 | 1402 |
13 | TraesCS7A01G453200 | chr3D | 85.806 | 310 | 41 | 3 | 902 | 1208 | 324386227 | 324386536 | 4.270000e-85 | 326 |
14 | TraesCS7A01G453200 | chr3D | 94.366 | 142 | 6 | 2 | 1403 | 1543 | 454698873 | 454698733 | 2.680000e-52 | 217 |
15 | TraesCS7A01G453200 | chr3A | 83.595 | 1530 | 167 | 45 | 2067 | 3546 | 437863778 | 437865273 | 0.000000e+00 | 1358 |
16 | TraesCS7A01G453200 | chr3A | 81.400 | 1414 | 192 | 37 | 1696 | 3073 | 437635635 | 437637013 | 0.000000e+00 | 1088 |
17 | TraesCS7A01G453200 | chr3A | 82.367 | 431 | 72 | 4 | 899 | 1326 | 437862400 | 437862829 | 5.400000e-99 | 372 |
18 | TraesCS7A01G453200 | chr3A | 88.095 | 168 | 20 | 0 | 1050 | 1217 | 437635418 | 437635585 | 2.700000e-47 | 200 |
19 | TraesCS7A01G453200 | chr3A | 82.759 | 203 | 28 | 4 | 3112 | 3308 | 437643479 | 437643680 | 1.630000e-39 | 174 |
20 | TraesCS7A01G453200 | chr3B | 80.124 | 1937 | 277 | 63 | 1678 | 3546 | 424792427 | 424790531 | 0.000000e+00 | 1345 |
21 | TraesCS7A01G453200 | chr3B | 88.746 | 311 | 34 | 1 | 908 | 1217 | 424792761 | 424792451 | 3.230000e-101 | 379 |
22 | TraesCS7A01G453200 | chr2A | 80.941 | 404 | 66 | 9 | 497 | 890 | 722521614 | 722522016 | 4.300000e-80 | 309 |
23 | TraesCS7A01G453200 | chr2A | 96.350 | 137 | 4 | 1 | 1405 | 1540 | 630094612 | 630094748 | 1.600000e-54 | 224 |
24 | TraesCS7A01G453200 | chr1D | 94.483 | 145 | 7 | 1 | 1414 | 1558 | 444519423 | 444519280 | 5.760000e-54 | 222 |
25 | TraesCS7A01G453200 | chr1D | 93.966 | 116 | 7 | 0 | 4156 | 4271 | 414643236 | 414643351 | 4.550000e-40 | 176 |
26 | TraesCS7A01G453200 | chr2D | 95.588 | 136 | 5 | 1 | 1406 | 1540 | 257442997 | 257443132 | 2.680000e-52 | 217 |
27 | TraesCS7A01G453200 | chr5D | 91.250 | 160 | 10 | 4 | 1408 | 1567 | 377830429 | 377830274 | 9.630000e-52 | 215 |
28 | TraesCS7A01G453200 | chr5D | 94.737 | 114 | 6 | 0 | 4162 | 4275 | 94343223 | 94343110 | 1.260000e-40 | 178 |
29 | TraesCS7A01G453200 | chr5D | 94.017 | 117 | 6 | 1 | 4162 | 4278 | 257163170 | 257163285 | 4.550000e-40 | 176 |
30 | TraesCS7A01G453200 | chrUn | 93.939 | 132 | 8 | 0 | 1409 | 1540 | 346699553 | 346699684 | 2.700000e-47 | 200 |
31 | TraesCS7A01G453200 | chrUn | 88.957 | 163 | 16 | 2 | 1412 | 1573 | 405554613 | 405554452 | 2.700000e-47 | 200 |
32 | TraesCS7A01G453200 | chrUn | 93.939 | 132 | 8 | 0 | 1409 | 1540 | 411464411 | 411464542 | 2.700000e-47 | 200 |
33 | TraesCS7A01G453200 | chr1B | 95.652 | 115 | 4 | 1 | 4158 | 4271 | 683469672 | 683469558 | 2.720000e-42 | 183 |
34 | TraesCS7A01G453200 | chr5B | 91.667 | 132 | 7 | 4 | 4140 | 4268 | 501473781 | 501473651 | 3.510000e-41 | 180 |
35 | TraesCS7A01G453200 | chr5B | 91.406 | 128 | 7 | 4 | 4149 | 4273 | 664881911 | 664881785 | 5.880000e-39 | 172 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G453200 | chr7A | 647294921 | 647299342 | 4421 | False | 8167.000000 | 8167 | 100.000000 | 1 | 4422 | 1 | chr7A.!!$F1 | 4421 |
1 | TraesCS7A01G453200 | chr7D | 562120244 | 562124229 | 3985 | False | 1889.666667 | 3879 | 93.560667 | 8 | 3873 | 3 | chr7D.!!$F3 | 3865 |
2 | TraesCS7A01G453200 | chr7B | 611718174 | 611722716 | 4542 | False | 1471.250000 | 2918 | 92.893750 | 30 | 4418 | 4 | chr7B.!!$F2 | 4388 |
3 | TraesCS7A01G453200 | chr3D | 324386227 | 324388383 | 2156 | False | 864.000000 | 1402 | 83.511000 | 902 | 3476 | 2 | chr3D.!!$F1 | 2574 |
4 | TraesCS7A01G453200 | chr3A | 437862400 | 437865273 | 2873 | False | 865.000000 | 1358 | 82.981000 | 899 | 3546 | 2 | chr3A.!!$F3 | 2647 |
5 | TraesCS7A01G453200 | chr3A | 437635418 | 437637013 | 1595 | False | 644.000000 | 1088 | 84.747500 | 1050 | 3073 | 2 | chr3A.!!$F2 | 2023 |
6 | TraesCS7A01G453200 | chr3B | 424790531 | 424792761 | 2230 | True | 862.000000 | 1345 | 84.435000 | 908 | 3546 | 2 | chr3B.!!$R1 | 2638 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
310 | 312 | 0.177373 | GTTCTAGGGTTACAGGGGCG | 59.823 | 60.0 | 0.00 | 0.00 | 0.00 | 6.13 | F |
1332 | 1618 | 0.165944 | GGTTTGACGAACTCATGCGG | 59.834 | 55.0 | 5.55 | 0.00 | 38.35 | 5.69 | F |
2414 | 3214 | 0.105964 | TCCCAACTGTTGTGGAGTCG | 59.894 | 55.0 | 20.02 | 5.52 | 0.00 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1412 | 1793 | 0.978907 | TTTTGGGACGGAGGGAGTAC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 | R |
2732 | 3536 | 3.203716 | TGCAAAAATGAGTGCATGCAAA | 58.796 | 36.364 | 24.58 | 11.85 | 45.52 | 3.68 | R |
3645 | 4500 | 0.104855 | TATCTTCTCGCGCATTGGCT | 59.895 | 50.000 | 8.75 | 0.00 | 38.10 | 4.75 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
109 | 111 | 2.438795 | GCGACCGGAGAGGAGAGT | 60.439 | 66.667 | 9.46 | 0.00 | 45.00 | 3.24 |
147 | 149 | 3.153609 | GGAAACGGTCGTCTTCGC | 58.846 | 61.111 | 0.00 | 0.00 | 36.96 | 4.70 |
235 | 237 | 0.961857 | TAAGCGGGCGACTGTACTGA | 60.962 | 55.000 | 6.77 | 0.00 | 39.64 | 3.41 |
254 | 256 | 2.221169 | GACACACCACTGCAAATCTGA | 58.779 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
256 | 258 | 1.538512 | CACACCACTGCAAATCTGAGG | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
264 | 266 | 4.153117 | CACTGCAAATCTGAGGACTTGTAC | 59.847 | 45.833 | 0.00 | 0.00 | 32.10 | 2.90 |
270 | 272 | 5.776173 | AATCTGAGGACTTGTACGGATAG | 57.224 | 43.478 | 0.00 | 0.00 | 0.00 | 2.08 |
280 | 282 | 5.383476 | ACTTGTACGGATAGCTGTAGGTAT | 58.617 | 41.667 | 0.00 | 3.44 | 40.97 | 2.73 |
310 | 312 | 0.177373 | GTTCTAGGGTTACAGGGGCG | 59.823 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
324 | 326 | 3.878667 | GGCGCAGGGGGAAGCTAT | 61.879 | 66.667 | 10.83 | 0.00 | 0.00 | 2.97 |
621 | 871 | 4.260985 | TGCACCACACCATGTAAAGATAG | 58.739 | 43.478 | 0.00 | 0.00 | 0.00 | 2.08 |
760 | 1039 | 1.478288 | GGGCTGCAAATGCTCTAGGAT | 60.478 | 52.381 | 6.97 | 0.00 | 42.66 | 3.24 |
772 | 1051 | 2.741228 | GCTCTAGGATTGCTGTCACCAG | 60.741 | 54.545 | 0.00 | 0.00 | 41.91 | 4.00 |
791 | 1070 | 4.018490 | CCAGACCATTCAATGTTCCATCA | 58.982 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
801 | 1080 | 4.523943 | TCAATGTTCCATCAACCTTCCAAG | 59.476 | 41.667 | 0.00 | 0.00 | 33.51 | 3.61 |
808 | 1087 | 3.245264 | CCATCAACCTTCCAAGTAGGGTT | 60.245 | 47.826 | 0.00 | 0.00 | 42.01 | 4.11 |
829 | 1108 | 9.533831 | AGGGTTATCTGAAAAGTGAAACATATT | 57.466 | 29.630 | 0.00 | 0.00 | 41.43 | 1.28 |
922 | 1201 | 6.884832 | TCTTCTCTAGGACAAACAGACAAAA | 58.115 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
929 | 1208 | 4.165372 | AGGACAAACAGACAAAAGGGTAGA | 59.835 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
952 | 1231 | 5.759963 | AGGTAGCTATCATTCGAACTTACG | 58.240 | 41.667 | 6.80 | 0.00 | 0.00 | 3.18 |
979 | 1259 | 4.188247 | TGGAATCTTGTACAGAGTTCGG | 57.812 | 45.455 | 0.00 | 0.00 | 33.87 | 4.30 |
1023 | 1303 | 1.198713 | ATGAGCAGTTCATCCTCCGT | 58.801 | 50.000 | 0.00 | 0.00 | 43.03 | 4.69 |
1177 | 1459 | 3.057806 | CCGCAAATTCTACTTCCCGTTTT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
1260 | 1546 | 9.092876 | GGTATTTCTCAGAGAATACACTGAAAG | 57.907 | 37.037 | 13.86 | 0.00 | 41.55 | 2.62 |
1269 | 1555 | 5.010933 | AGAATACACTGAAAGAGAGACGGA | 58.989 | 41.667 | 0.00 | 0.00 | 37.43 | 4.69 |
1325 | 1611 | 0.884704 | AGCATGCGGTTTGACGAACT | 60.885 | 50.000 | 13.01 | 0.00 | 38.35 | 3.01 |
1326 | 1612 | 0.452784 | GCATGCGGTTTGACGAACTC | 60.453 | 55.000 | 0.00 | 0.00 | 38.35 | 3.01 |
1327 | 1613 | 0.865111 | CATGCGGTTTGACGAACTCA | 59.135 | 50.000 | 5.55 | 4.87 | 38.35 | 3.41 |
1328 | 1614 | 1.464608 | CATGCGGTTTGACGAACTCAT | 59.535 | 47.619 | 5.55 | 6.75 | 38.35 | 2.90 |
1329 | 1615 | 0.865111 | TGCGGTTTGACGAACTCATG | 59.135 | 50.000 | 5.55 | 0.00 | 38.35 | 3.07 |
1330 | 1616 | 0.452784 | GCGGTTTGACGAACTCATGC | 60.453 | 55.000 | 5.55 | 2.12 | 38.35 | 4.06 |
1331 | 1617 | 0.179250 | CGGTTTGACGAACTCATGCG | 60.179 | 55.000 | 5.55 | 0.00 | 38.35 | 4.73 |
1332 | 1618 | 0.165944 | GGTTTGACGAACTCATGCGG | 59.834 | 55.000 | 5.55 | 0.00 | 38.35 | 5.69 |
1333 | 1619 | 0.865769 | GTTTGACGAACTCATGCGGT | 59.134 | 50.000 | 0.00 | 0.00 | 35.31 | 5.68 |
1334 | 1620 | 1.263217 | GTTTGACGAACTCATGCGGTT | 59.737 | 47.619 | 0.00 | 4.06 | 35.31 | 4.44 |
1335 | 1621 | 1.588674 | TTGACGAACTCATGCGGTTT | 58.411 | 45.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1336 | 1622 | 0.865111 | TGACGAACTCATGCGGTTTG | 59.135 | 50.000 | 13.49 | 13.49 | 35.03 | 2.93 |
1337 | 1623 | 1.144969 | GACGAACTCATGCGGTTTGA | 58.855 | 50.000 | 18.84 | 0.00 | 33.60 | 2.69 |
1338 | 1624 | 0.865769 | ACGAACTCATGCGGTTTGAC | 59.134 | 50.000 | 18.84 | 3.49 | 33.60 | 3.18 |
1339 | 1625 | 0.179250 | CGAACTCATGCGGTTTGACG | 60.179 | 55.000 | 10.99 | 5.28 | 31.65 | 4.35 |
1340 | 1626 | 1.144969 | GAACTCATGCGGTTTGACGA | 58.855 | 50.000 | 0.00 | 0.00 | 35.47 | 4.20 |
1341 | 1627 | 1.529438 | GAACTCATGCGGTTTGACGAA | 59.471 | 47.619 | 0.00 | 0.00 | 35.47 | 3.85 |
1342 | 1628 | 0.865769 | ACTCATGCGGTTTGACGAAC | 59.134 | 50.000 | 0.00 | 0.00 | 37.53 | 3.95 |
1404 | 1785 | 4.526262 | CCAATATCTAGCACTACTGGCTCT | 59.474 | 45.833 | 0.00 | 0.00 | 42.62 | 4.09 |
1412 | 1793 | 2.806019 | GCACTACTGGCTCTCATCATGG | 60.806 | 54.545 | 0.00 | 0.00 | 0.00 | 3.66 |
1413 | 1794 | 2.433604 | CACTACTGGCTCTCATCATGGT | 59.566 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1414 | 1795 | 3.638627 | CACTACTGGCTCTCATCATGGTA | 59.361 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
1415 | 1796 | 3.639094 | ACTACTGGCTCTCATCATGGTAC | 59.361 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
1416 | 1797 | 2.756907 | ACTGGCTCTCATCATGGTACT | 58.243 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1417 | 1798 | 2.697751 | ACTGGCTCTCATCATGGTACTC | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1418 | 1799 | 2.036992 | CTGGCTCTCATCATGGTACTCC | 59.963 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
1419 | 1800 | 1.346068 | GGCTCTCATCATGGTACTCCC | 59.654 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
1420 | 1801 | 2.324541 | GCTCTCATCATGGTACTCCCT | 58.675 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
1421 | 1802 | 2.298729 | GCTCTCATCATGGTACTCCCTC | 59.701 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1422 | 1803 | 2.896685 | CTCTCATCATGGTACTCCCTCC | 59.103 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1423 | 1804 | 1.615883 | CTCATCATGGTACTCCCTCCG | 59.384 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
1424 | 1805 | 1.063190 | TCATCATGGTACTCCCTCCGT | 60.063 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
1425 | 1806 | 1.341531 | CATCATGGTACTCCCTCCGTC | 59.658 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
1426 | 1807 | 0.396695 | TCATGGTACTCCCTCCGTCC | 60.397 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1427 | 1808 | 1.075450 | ATGGTACTCCCTCCGTCCC | 60.075 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
1428 | 1809 | 1.882189 | ATGGTACTCCCTCCGTCCCA | 61.882 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
1429 | 1810 | 1.305549 | GGTACTCCCTCCGTCCCAA | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
1430 | 1811 | 0.906282 | GGTACTCCCTCCGTCCCAAA | 60.906 | 60.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1431 | 1812 | 0.978907 | GTACTCCCTCCGTCCCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1432 | 1813 | 1.558294 | GTACTCCCTCCGTCCCAAAAT | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
1433 | 1814 | 1.073098 | ACTCCCTCCGTCCCAAAATT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1434 | 1815 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
1435 | 1816 | 1.282157 | CTCCCTCCGTCCCAAAATTCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
1436 | 1817 | 1.708551 | TCCCTCCGTCCCAAAATTCTT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1437 | 1818 | 1.818674 | CCCTCCGTCCCAAAATTCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1438 | 1819 | 2.514803 | CCTCCGTCCCAAAATTCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1439 | 1820 | 2.488153 | CCTCCGTCCCAAAATTCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1440 | 1821 | 3.412386 | CTCCGTCCCAAAATTCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1441 | 1822 | 3.821033 | CTCCGTCCCAAAATTCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1442 | 1823 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
1443 | 1824 | 5.001232 | TCCGTCCCAAAATTCTTGTCTTAG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
1444 | 1825 | 5.001232 | CCGTCCCAAAATTCTTGTCTTAGA | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
1445 | 1826 | 5.648092 | CCGTCCCAAAATTCTTGTCTTAGAT | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1446 | 1827 | 6.151144 | CCGTCCCAAAATTCTTGTCTTAGATT | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
1447 | 1828 | 7.309194 | CCGTCCCAAAATTCTTGTCTTAGATTT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1448 | 1829 | 7.538678 | CGTCCCAAAATTCTTGTCTTAGATTTG | 59.461 | 37.037 | 0.00 | 0.00 | 29.84 | 2.32 |
1449 | 1830 | 8.360390 | GTCCCAAAATTCTTGTCTTAGATTTGT | 58.640 | 33.333 | 0.00 | 0.00 | 28.79 | 2.83 |
1450 | 1831 | 8.576442 | TCCCAAAATTCTTGTCTTAGATTTGTC | 58.424 | 33.333 | 0.00 | 0.00 | 28.79 | 3.18 |
1451 | 1832 | 8.579863 | CCCAAAATTCTTGTCTTAGATTTGTCT | 58.420 | 33.333 | 0.00 | 0.00 | 28.79 | 3.41 |
1459 | 1840 | 9.582431 | TCTTGTCTTAGATTTGTCTAAATACGG | 57.418 | 33.333 | 0.26 | 0.99 | 36.66 | 4.02 |
1460 | 1841 | 9.582431 | CTTGTCTTAGATTTGTCTAAATACGGA | 57.418 | 33.333 | 0.26 | 0.00 | 36.66 | 4.69 |
1462 | 1843 | 9.529325 | TGTCTTAGATTTGTCTAAATACGGATG | 57.471 | 33.333 | 0.26 | 0.00 | 36.66 | 3.51 |
1463 | 1844 | 9.530633 | GTCTTAGATTTGTCTAAATACGGATGT | 57.469 | 33.333 | 0.26 | 0.00 | 36.66 | 3.06 |
1468 | 1849 | 9.698309 | AGATTTGTCTAAATACGGATGTATCAG | 57.302 | 33.333 | 0.00 | 0.00 | 40.42 | 2.90 |
1469 | 1850 | 8.833231 | ATTTGTCTAAATACGGATGTATCAGG | 57.167 | 34.615 | 0.00 | 0.00 | 40.42 | 3.86 |
1470 | 1851 | 6.971726 | TGTCTAAATACGGATGTATCAGGT | 57.028 | 37.500 | 0.00 | 0.00 | 40.42 | 4.00 |
1471 | 1852 | 6.978338 | TGTCTAAATACGGATGTATCAGGTC | 58.022 | 40.000 | 0.00 | 0.00 | 40.42 | 3.85 |
1472 | 1853 | 6.548251 | TGTCTAAATACGGATGTATCAGGTCA | 59.452 | 38.462 | 0.00 | 0.00 | 40.42 | 4.02 |
1473 | 1854 | 6.862090 | GTCTAAATACGGATGTATCAGGTCAC | 59.138 | 42.308 | 0.00 | 0.00 | 40.42 | 3.67 |
1474 | 1855 | 3.917329 | ATACGGATGTATCAGGTCACG | 57.083 | 47.619 | 0.00 | 0.00 | 36.56 | 4.35 |
1475 | 1856 | 1.471119 | ACGGATGTATCAGGTCACGT | 58.529 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1476 | 1857 | 1.822990 | ACGGATGTATCAGGTCACGTT | 59.177 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
1477 | 1858 | 2.232941 | ACGGATGTATCAGGTCACGTTT | 59.767 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
1478 | 1859 | 3.259064 | CGGATGTATCAGGTCACGTTTT | 58.741 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
1479 | 1860 | 4.082081 | ACGGATGTATCAGGTCACGTTTTA | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
1480 | 1861 | 4.503007 | CGGATGTATCAGGTCACGTTTTAG | 59.497 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
1481 | 1862 | 5.416947 | GGATGTATCAGGTCACGTTTTAGT | 58.583 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1482 | 1863 | 6.567050 | GGATGTATCAGGTCACGTTTTAGTA | 58.433 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1483 | 1864 | 7.208080 | GGATGTATCAGGTCACGTTTTAGTAT | 58.792 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
1484 | 1865 | 7.709613 | GGATGTATCAGGTCACGTTTTAGTATT | 59.290 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1485 | 1866 | 9.740239 | GATGTATCAGGTCACGTTTTAGTATTA | 57.260 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1486 | 1867 | 9.745880 | ATGTATCAGGTCACGTTTTAGTATTAG | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1487 | 1868 | 8.192774 | TGTATCAGGTCACGTTTTAGTATTAGG | 58.807 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
1488 | 1869 | 6.594788 | TCAGGTCACGTTTTAGTATTAGGT | 57.405 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
1489 | 1870 | 7.701539 | TCAGGTCACGTTTTAGTATTAGGTA | 57.298 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1490 | 1871 | 7.538575 | TCAGGTCACGTTTTAGTATTAGGTAC | 58.461 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
1491 | 1872 | 7.176515 | TCAGGTCACGTTTTAGTATTAGGTACA | 59.823 | 37.037 | 0.00 | 0.00 | 35.67 | 2.90 |
1492 | 1873 | 7.977853 | CAGGTCACGTTTTAGTATTAGGTACAT | 59.022 | 37.037 | 0.00 | 0.00 | 35.67 | 2.29 |
1493 | 1874 | 8.193438 | AGGTCACGTTTTAGTATTAGGTACATC | 58.807 | 37.037 | 0.00 | 0.00 | 35.67 | 3.06 |
1494 | 1875 | 7.436376 | GGTCACGTTTTAGTATTAGGTACATCC | 59.564 | 40.741 | 0.00 | 0.00 | 35.67 | 3.51 |
1495 | 1876 | 7.166473 | GTCACGTTTTAGTATTAGGTACATCCG | 59.834 | 40.741 | 0.00 | 0.00 | 41.99 | 4.18 |
1496 | 1877 | 6.974622 | CACGTTTTAGTATTAGGTACATCCGT | 59.025 | 38.462 | 0.00 | 0.00 | 41.99 | 4.69 |
1497 | 1878 | 8.128582 | CACGTTTTAGTATTAGGTACATCCGTA | 58.871 | 37.037 | 0.00 | 0.00 | 41.99 | 4.02 |
1498 | 1879 | 8.850156 | ACGTTTTAGTATTAGGTACATCCGTAT | 58.150 | 33.333 | 0.00 | 0.00 | 41.99 | 3.06 |
1499 | 1880 | 9.334693 | CGTTTTAGTATTAGGTACATCCGTATC | 57.665 | 37.037 | 0.00 | 0.00 | 41.99 | 2.24 |
1505 | 1886 | 8.600668 | AGTATTAGGTACATCCGTATCTAGACA | 58.399 | 37.037 | 0.00 | 0.00 | 41.33 | 3.41 |
1506 | 1887 | 9.224267 | GTATTAGGTACATCCGTATCTAGACAA | 57.776 | 37.037 | 0.00 | 0.00 | 41.33 | 3.18 |
1507 | 1888 | 8.701908 | ATTAGGTACATCCGTATCTAGACAAA | 57.298 | 34.615 | 0.00 | 0.00 | 41.33 | 2.83 |
1508 | 1889 | 8.701908 | TTAGGTACATCCGTATCTAGACAAAT | 57.298 | 34.615 | 0.00 | 0.00 | 41.33 | 2.32 |
1509 | 1890 | 9.797642 | TTAGGTACATCCGTATCTAGACAAATA | 57.202 | 33.333 | 0.00 | 0.00 | 41.33 | 1.40 |
1510 | 1891 | 8.880991 | AGGTACATCCGTATCTAGACAAATAT | 57.119 | 34.615 | 0.00 | 0.00 | 37.29 | 1.28 |
1511 | 1892 | 9.970553 | AGGTACATCCGTATCTAGACAAATATA | 57.029 | 33.333 | 0.00 | 0.00 | 37.29 | 0.86 |
1530 | 1911 | 9.289303 | CAAATATAAGACAAGAATTTTGGGACG | 57.711 | 33.333 | 5.68 | 0.00 | 0.00 | 4.79 |
1531 | 1912 | 5.897377 | ATAAGACAAGAATTTTGGGACGG | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
1532 | 1913 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
1533 | 1914 | 3.412386 | AGACAAGAATTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
1534 | 1915 | 2.488153 | GACAAGAATTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1535 | 1916 | 1.818674 | CAAGAATTTTGGGACGGAGGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1536 | 1917 | 1.368374 | AGAATTTTGGGACGGAGGGA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1543 | 1924 | 2.599408 | TGGGACGGAGGGAGTATATC | 57.401 | 55.000 | 0.00 | 0.00 | 0.00 | 1.63 |
1714 | 2109 | 4.142600 | GCACTGATAGGTTGGAATGTGTTC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
1848 | 2254 | 4.728608 | GTGTTGTTTCTTTGTAGCTCAACG | 59.271 | 41.667 | 0.00 | 0.00 | 37.20 | 4.10 |
1962 | 2368 | 5.511202 | CCACAAGTTACTGGGATTGCATTTT | 60.511 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2169 | 2884 | 8.177663 | CCAAACTTTAGATGTAGCATTGTGTAG | 58.822 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2414 | 3214 | 0.105964 | TCCCAACTGTTGTGGAGTCG | 59.894 | 55.000 | 20.02 | 5.52 | 0.00 | 4.18 |
2482 | 3284 | 5.265989 | TGGTCAGGTAAAAGTGAAGGTTTT | 58.734 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
2647 | 3449 | 0.596083 | CGTTATCGCAGAGAGCCTGG | 60.596 | 60.000 | 0.00 | 0.00 | 43.63 | 4.45 |
2980 | 3786 | 4.151883 | TGCTTGCCCTTCACTTTAGAAAT | 58.848 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
3097 | 3903 | 8.512138 | CAAACCTAACCTTGTTAAAAGATCGAT | 58.488 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
3100 | 3906 | 8.537858 | ACCTAACCTTGTTAAAAGATCGATACT | 58.462 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3172 | 4004 | 4.753516 | TCATAGAAAGGAAATCTCGCCA | 57.246 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
3201 | 4033 | 4.497300 | TGCCAACCTGTCTACGTATAAAC | 58.503 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
3435 | 4286 | 5.525012 | TGGTGAATTAAGCGATTCAGATCAG | 59.475 | 40.000 | 11.70 | 0.00 | 44.29 | 2.90 |
3571 | 4426 | 3.200825 | AGGGTGATTGTAACTGCTGCTAT | 59.799 | 43.478 | 0.00 | 0.00 | 0.00 | 2.97 |
3596 | 4451 | 3.558505 | CTGAATTTTGCACTCCAGTTCG | 58.441 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
3605 | 4460 | 2.685100 | CACTCCAGTTCGGTTACTTCC | 58.315 | 52.381 | 0.00 | 0.00 | 35.57 | 3.46 |
3617 | 4472 | 3.184986 | CGGTTACTTCCAACGACGAATTT | 59.815 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3653 | 4508 | 7.013274 | TCACCATAATTTTAGTCTAGCCAATGC | 59.987 | 37.037 | 0.00 | 0.00 | 37.95 | 3.56 |
3686 | 4541 | 0.250640 | GGGCAGCTCAGGGTGATATG | 60.251 | 60.000 | 0.00 | 0.00 | 42.91 | 1.78 |
3688 | 4543 | 1.226686 | GCAGCTCAGGGTGATATGCG | 61.227 | 60.000 | 0.00 | 0.00 | 42.91 | 4.73 |
3693 | 4548 | 2.483714 | GCTCAGGGTGATATGCGAAGAA | 60.484 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3694 | 4549 | 3.805108 | GCTCAGGGTGATATGCGAAGAAT | 60.805 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
3695 | 4550 | 4.384056 | CTCAGGGTGATATGCGAAGAATT | 58.616 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
3729 | 4584 | 6.811253 | TTTACACAAATGGTCCATCACTAC | 57.189 | 37.500 | 4.39 | 0.00 | 0.00 | 2.73 |
3735 | 4590 | 5.243730 | ACAAATGGTCCATCACTACTTTTGG | 59.756 | 40.000 | 4.39 | 0.00 | 0.00 | 3.28 |
3791 | 4646 | 7.994911 | TGGAAATATTCTGATGTCTGCAATAGT | 59.005 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3830 | 4685 | 6.653989 | AGTAACCATTCTCCTGATTTACCAG | 58.346 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3876 | 4731 | 8.638685 | TCTATAAGTAAGTTCGTAACATTGCC | 57.361 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
3877 | 4732 | 6.673154 | ATAAGTAAGTTCGTAACATTGCCC | 57.327 | 37.500 | 0.00 | 0.00 | 0.00 | 5.36 |
3878 | 4733 | 4.281898 | AGTAAGTTCGTAACATTGCCCT | 57.718 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
3901 | 4756 | 7.855904 | CCCTGCGTATGTTTTTCTTGTATATTC | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
4037 | 4893 | 3.795688 | TGATTTGCACTCTTTCCTCCT | 57.204 | 42.857 | 0.00 | 0.00 | 0.00 | 3.69 |
4038 | 4894 | 4.908601 | TGATTTGCACTCTTTCCTCCTA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 2.94 |
4061 | 4917 | 1.825090 | CCTTGTAGTGCTGCCATGAA | 58.175 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4062 | 4918 | 1.741706 | CCTTGTAGTGCTGCCATGAAG | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
4063 | 4919 | 1.131883 | CTTGTAGTGCTGCCATGAAGC | 59.868 | 52.381 | 12.07 | 12.07 | 41.22 | 3.86 |
4068 | 4924 | 4.180496 | GCTGCCATGAAGCAAAGC | 57.820 | 55.556 | 13.61 | 4.45 | 43.52 | 3.51 |
4070 | 4926 | 1.153901 | CTGCCATGAAGCAAAGCGG | 60.154 | 57.895 | 0.00 | 0.00 | 43.52 | 5.52 |
4071 | 4927 | 1.588824 | CTGCCATGAAGCAAAGCGGA | 61.589 | 55.000 | 0.00 | 0.00 | 43.52 | 5.54 |
4072 | 4928 | 1.177895 | TGCCATGAAGCAAAGCGGAA | 61.178 | 50.000 | 0.00 | 0.00 | 40.56 | 4.30 |
4073 | 4929 | 0.733909 | GCCATGAAGCAAAGCGGAAC | 60.734 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4074 | 4930 | 0.883833 | CCATGAAGCAAAGCGGAACT | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4075 | 4931 | 2.083774 | CCATGAAGCAAAGCGGAACTA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
4077 | 4933 | 1.808411 | TGAAGCAAAGCGGAACTAGG | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4082 | 5231 | 1.892209 | CAAAGCGGAACTAGGTGGTT | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4083 | 5232 | 1.535462 | CAAAGCGGAACTAGGTGGTTG | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
4097 | 5246 | 0.746063 | TGGTTGAAAAGTGCCTGCAG | 59.254 | 50.000 | 6.78 | 6.78 | 0.00 | 4.41 |
4108 | 5257 | 2.035312 | CCTGCAGAGGCCAAGCTT | 59.965 | 61.111 | 17.39 | 0.00 | 40.13 | 3.74 |
4109 | 5258 | 1.605738 | CCTGCAGAGGCCAAGCTTT | 60.606 | 57.895 | 17.39 | 0.00 | 40.13 | 3.51 |
4110 | 5259 | 1.183676 | CCTGCAGAGGCCAAGCTTTT | 61.184 | 55.000 | 17.39 | 0.00 | 40.13 | 2.27 |
4111 | 5260 | 0.243095 | CTGCAGAGGCCAAGCTTTTC | 59.757 | 55.000 | 8.42 | 0.00 | 40.13 | 2.29 |
4112 | 5261 | 1.181098 | TGCAGAGGCCAAGCTTTTCC | 61.181 | 55.000 | 5.01 | 0.16 | 40.13 | 3.13 |
4113 | 5262 | 1.181098 | GCAGAGGCCAAGCTTTTCCA | 61.181 | 55.000 | 5.01 | 0.00 | 0.00 | 3.53 |
4114 | 5263 | 0.600057 | CAGAGGCCAAGCTTTTCCAC | 59.400 | 55.000 | 5.01 | 9.10 | 0.00 | 4.02 |
4115 | 5264 | 0.185901 | AGAGGCCAAGCTTTTCCACA | 59.814 | 50.000 | 5.01 | 0.00 | 0.00 | 4.17 |
4116 | 5265 | 1.203100 | AGAGGCCAAGCTTTTCCACAT | 60.203 | 47.619 | 5.01 | 0.00 | 0.00 | 3.21 |
4117 | 5266 | 1.203287 | GAGGCCAAGCTTTTCCACATC | 59.797 | 52.381 | 5.01 | 2.35 | 0.00 | 3.06 |
4118 | 5267 | 1.203100 | AGGCCAAGCTTTTCCACATCT | 60.203 | 47.619 | 5.01 | 0.00 | 0.00 | 2.90 |
4119 | 5268 | 1.203287 | GGCCAAGCTTTTCCACATCTC | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
4120 | 5269 | 1.888512 | GCCAAGCTTTTCCACATCTCA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
4121 | 5270 | 2.297033 | GCCAAGCTTTTCCACATCTCAA | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
4123 | 5272 | 4.740334 | GCCAAGCTTTTCCACATCTCAAAA | 60.740 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
4124 | 5273 | 5.358922 | CCAAGCTTTTCCACATCTCAAAAA | 58.641 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
4161 | 5343 | 9.466497 | AAAGTGTTCATCTGGACATATATTTGT | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
4163 | 5345 | 9.547753 | AGTGTTCATCTGGACATATATTTGTAC | 57.452 | 33.333 | 1.78 | 1.78 | 0.00 | 2.90 |
4164 | 5346 | 9.547753 | GTGTTCATCTGGACATATATTTGTACT | 57.452 | 33.333 | 9.58 | 0.00 | 31.30 | 2.73 |
4165 | 5347 | 9.764363 | TGTTCATCTGGACATATATTTGTACTC | 57.236 | 33.333 | 9.58 | 0.17 | 31.30 | 2.59 |
4166 | 5348 | 9.764363 | GTTCATCTGGACATATATTTGTACTCA | 57.236 | 33.333 | 9.58 | 4.04 | 31.30 | 3.41 |
4167 | 5349 | 9.764363 | TTCATCTGGACATATATTTGTACTCAC | 57.236 | 33.333 | 9.58 | 0.00 | 31.30 | 3.51 |
4168 | 5350 | 9.147732 | TCATCTGGACATATATTTGTACTCACT | 57.852 | 33.333 | 9.58 | 0.00 | 31.30 | 3.41 |
4169 | 5351 | 9.416794 | CATCTGGACATATATTTGTACTCACTC | 57.583 | 37.037 | 9.58 | 0.00 | 31.30 | 3.51 |
4170 | 5352 | 7.952671 | TCTGGACATATATTTGTACTCACTCC | 58.047 | 38.462 | 9.58 | 1.67 | 31.30 | 3.85 |
4171 | 5353 | 6.745116 | TGGACATATATTTGTACTCACTCCG | 58.255 | 40.000 | 9.58 | 0.00 | 31.30 | 4.63 |
4172 | 5354 | 6.322969 | TGGACATATATTTGTACTCACTCCGT | 59.677 | 38.462 | 9.58 | 0.00 | 31.30 | 4.69 |
4173 | 5355 | 7.147794 | TGGACATATATTTGTACTCACTCCGTT | 60.148 | 37.037 | 9.58 | 0.00 | 31.30 | 4.44 |
4174 | 5356 | 7.381678 | GGACATATATTTGTACTCACTCCGTTC | 59.618 | 40.741 | 1.54 | 0.00 | 0.00 | 3.95 |
4175 | 5357 | 6.916387 | ACATATATTTGTACTCACTCCGTTCG | 59.084 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
4176 | 5358 | 2.427232 | TTTGTACTCACTCCGTTCGG | 57.573 | 50.000 | 4.74 | 4.74 | 0.00 | 4.30 |
4177 | 5359 | 1.608055 | TTGTACTCACTCCGTTCGGA | 58.392 | 50.000 | 13.34 | 13.34 | 0.00 | 4.55 |
4178 | 5360 | 1.608055 | TGTACTCACTCCGTTCGGAA | 58.392 | 50.000 | 14.79 | 0.04 | 33.41 | 4.30 |
4179 | 5361 | 2.165167 | TGTACTCACTCCGTTCGGAAT | 58.835 | 47.619 | 14.79 | 2.10 | 33.41 | 3.01 |
4180 | 5362 | 2.559668 | TGTACTCACTCCGTTCGGAATT | 59.440 | 45.455 | 14.79 | 2.66 | 33.41 | 2.17 |
4181 | 5363 | 3.758023 | TGTACTCACTCCGTTCGGAATTA | 59.242 | 43.478 | 14.79 | 0.00 | 33.41 | 1.40 |
4182 | 5364 | 3.227810 | ACTCACTCCGTTCGGAATTAC | 57.772 | 47.619 | 14.79 | 0.00 | 33.41 | 1.89 |
4183 | 5365 | 2.824341 | ACTCACTCCGTTCGGAATTACT | 59.176 | 45.455 | 14.79 | 0.00 | 33.41 | 2.24 |
4184 | 5366 | 3.119566 | ACTCACTCCGTTCGGAATTACTC | 60.120 | 47.826 | 14.79 | 0.00 | 33.41 | 2.59 |
4185 | 5367 | 2.159476 | TCACTCCGTTCGGAATTACTCG | 60.159 | 50.000 | 14.79 | 4.43 | 33.41 | 4.18 |
4186 | 5368 | 1.815003 | ACTCCGTTCGGAATTACTCGT | 59.185 | 47.619 | 14.79 | 5.03 | 33.41 | 4.18 |
4187 | 5369 | 2.159462 | ACTCCGTTCGGAATTACTCGTC | 60.159 | 50.000 | 14.79 | 0.00 | 33.41 | 4.20 |
4188 | 5370 | 2.086869 | TCCGTTCGGAATTACTCGTCT | 58.913 | 47.619 | 11.66 | 0.00 | 0.00 | 4.18 |
4189 | 5371 | 3.270027 | TCCGTTCGGAATTACTCGTCTA | 58.730 | 45.455 | 11.66 | 0.00 | 0.00 | 2.59 |
4190 | 5372 | 3.689161 | TCCGTTCGGAATTACTCGTCTAA | 59.311 | 43.478 | 11.66 | 0.00 | 0.00 | 2.10 |
4191 | 5373 | 4.033684 | CCGTTCGGAATTACTCGTCTAAG | 58.966 | 47.826 | 5.19 | 0.00 | 0.00 | 2.18 |
4192 | 5374 | 4.201851 | CCGTTCGGAATTACTCGTCTAAGA | 60.202 | 45.833 | 5.19 | 0.00 | 0.00 | 2.10 |
4193 | 5375 | 5.327091 | CGTTCGGAATTACTCGTCTAAGAA | 58.673 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4194 | 5376 | 5.796935 | CGTTCGGAATTACTCGTCTAAGAAA | 59.203 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4195 | 5377 | 6.471519 | CGTTCGGAATTACTCGTCTAAGAAAT | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
4196 | 5378 | 7.513196 | CGTTCGGAATTACTCGTCTAAGAAATG | 60.513 | 40.741 | 0.00 | 0.00 | 0.00 | 2.32 |
4197 | 5379 | 7.092137 | TCGGAATTACTCGTCTAAGAAATGA | 57.908 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4198 | 5380 | 7.541162 | TCGGAATTACTCGTCTAAGAAATGAA | 58.459 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4199 | 5381 | 8.195436 | TCGGAATTACTCGTCTAAGAAATGAAT | 58.805 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4200 | 5382 | 8.269424 | CGGAATTACTCGTCTAAGAAATGAATG | 58.731 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
4201 | 5383 | 9.099454 | GGAATTACTCGTCTAAGAAATGAATGT | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4259 | 5441 | 9.777575 | ATTTTTATAACAAGTAATTCCGAACGG | 57.222 | 29.630 | 6.94 | 6.94 | 0.00 | 4.44 |
4260 | 5442 | 8.545229 | TTTTATAACAAGTAATTCCGAACGGA | 57.455 | 30.769 | 12.04 | 12.04 | 43.52 | 4.69 |
4261 | 5443 | 7.760131 | TTATAACAAGTAATTCCGAACGGAG | 57.240 | 36.000 | 15.34 | 5.60 | 46.06 | 4.63 |
4262 | 5444 | 2.968675 | ACAAGTAATTCCGAACGGAGG | 58.031 | 47.619 | 15.34 | 4.52 | 46.06 | 4.30 |
4263 | 5445 | 2.301009 | ACAAGTAATTCCGAACGGAGGT | 59.699 | 45.455 | 15.34 | 10.24 | 46.06 | 3.85 |
4264 | 5446 | 3.511146 | ACAAGTAATTCCGAACGGAGGTA | 59.489 | 43.478 | 15.34 | 9.35 | 46.06 | 3.08 |
4265 | 5447 | 4.110482 | CAAGTAATTCCGAACGGAGGTAG | 58.890 | 47.826 | 15.34 | 1.49 | 46.06 | 3.18 |
4272 | 5454 | 3.470709 | TCCGAACGGAGGTAGTAGTATG | 58.529 | 50.000 | 12.04 | 0.00 | 39.76 | 2.39 |
4281 | 5463 | 6.944290 | ACGGAGGTAGTAGTATGCATGTATAA | 59.056 | 38.462 | 10.16 | 0.00 | 0.00 | 0.98 |
4408 | 5591 | 8.742777 | TCTTTCTTCTGTAGCATGCAAATAATT | 58.257 | 29.630 | 21.98 | 0.00 | 0.00 | 1.40 |
4412 | 5595 | 9.787532 | TCTTCTGTAGCATGCAAATAATTAAAC | 57.212 | 29.630 | 21.98 | 2.63 | 0.00 | 2.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.693767 | ATGGAGAGGAGGCTTGGAGG | 60.694 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3 | 4 | 1.704007 | GGGATGGAGAGGAGGCTTGG | 61.704 | 65.000 | 0.00 | 0.00 | 0.00 | 3.61 |
5 | 6 | 1.764054 | CGGGATGGAGAGGAGGCTT | 60.764 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
6 | 7 | 2.123077 | CGGGATGGAGAGGAGGCT | 60.123 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
225 | 227 | 2.743938 | CAGTGGTGTGTCAGTACAGTC | 58.256 | 52.381 | 0.00 | 0.00 | 35.91 | 3.51 |
235 | 237 | 2.224606 | CTCAGATTTGCAGTGGTGTGT | 58.775 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
254 | 256 | 2.736347 | ACAGCTATCCGTACAAGTCCT | 58.264 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
256 | 258 | 3.631227 | ACCTACAGCTATCCGTACAAGTC | 59.369 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
264 | 266 | 3.821600 | AGACACATACCTACAGCTATCCG | 59.178 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
270 | 272 | 6.490721 | AGAACCTATAGACACATACCTACAGC | 59.509 | 42.308 | 0.00 | 0.00 | 0.00 | 4.40 |
280 | 282 | 6.734532 | TGTAACCCTAGAACCTATAGACACA | 58.265 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
310 | 312 | 0.684153 | TTGCAATAGCTTCCCCCTGC | 60.684 | 55.000 | 0.00 | 0.00 | 42.74 | 4.85 |
353 | 584 | 8.085296 | ACAAGTCTAAAAACACACACAAAATCA | 58.915 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
621 | 871 | 9.705290 | AATGAAGTTACATGGTTGGTTAAAATC | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
630 | 880 | 7.335171 | TCTCATGAGAATGAAGTTACATGGTTG | 59.665 | 37.037 | 23.17 | 0.00 | 33.91 | 3.77 |
791 | 1070 | 5.098663 | TCAGATAACCCTACTTGGAAGGTT | 58.901 | 41.667 | 0.00 | 0.00 | 44.61 | 3.50 |
801 | 1080 | 7.739498 | TGTTTCACTTTTCAGATAACCCTAC | 57.261 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
829 | 1108 | 7.701924 | GCATTTCGTTGATCCTCATTCATTAAA | 59.298 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
922 | 1201 | 4.043059 | TCGAATGATAGCTACCTCTACCCT | 59.957 | 45.833 | 0.00 | 0.00 | 0.00 | 4.34 |
929 | 1208 | 5.759963 | CGTAAGTTCGAATGATAGCTACCT | 58.240 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
952 | 1231 | 5.057149 | ACTCTGTACAAGATTCCAACACAC | 58.943 | 41.667 | 10.71 | 0.00 | 33.29 | 3.82 |
979 | 1259 | 0.524414 | GCAATTACACCGTGGGGAAC | 59.476 | 55.000 | 3.03 | 0.00 | 36.97 | 3.62 |
1023 | 1303 | 4.284550 | GCCACAGAAGGGGGCACA | 62.285 | 66.667 | 2.05 | 0.00 | 46.92 | 4.57 |
1041 | 1321 | 1.669604 | TAAGACGCTCGATCTGCTCT | 58.330 | 50.000 | 0.00 | 5.38 | 0.00 | 4.09 |
1177 | 1459 | 1.463056 | CTCTACAACAATTTGCCGCGA | 59.537 | 47.619 | 8.23 | 0.00 | 36.00 | 5.87 |
1183 | 1465 | 7.226720 | ACAGTTCTACCACTCTACAACAATTTG | 59.773 | 37.037 | 0.00 | 0.00 | 38.83 | 2.32 |
1260 | 1546 | 6.797454 | ACTATCTAACAAATGTCCGTCTCTC | 58.203 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1269 | 1555 | 5.391950 | CGCCAGCAAACTATCTAACAAATGT | 60.392 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1325 | 1611 | 2.063266 | GTAGTTCGTCAAACCGCATGA | 58.937 | 47.619 | 0.00 | 0.00 | 38.76 | 3.07 |
1326 | 1612 | 2.066262 | AGTAGTTCGTCAAACCGCATG | 58.934 | 47.619 | 0.00 | 0.00 | 38.76 | 4.06 |
1327 | 1613 | 2.450609 | AGTAGTTCGTCAAACCGCAT | 57.549 | 45.000 | 0.00 | 0.00 | 38.76 | 4.73 |
1328 | 1614 | 3.052036 | GTTAGTAGTTCGTCAAACCGCA | 58.948 | 45.455 | 0.00 | 0.00 | 38.76 | 5.69 |
1329 | 1615 | 3.120782 | CAGTTAGTAGTTCGTCAAACCGC | 59.879 | 47.826 | 0.00 | 0.00 | 38.76 | 5.68 |
1330 | 1616 | 3.671928 | CCAGTTAGTAGTTCGTCAAACCG | 59.328 | 47.826 | 0.00 | 0.00 | 38.76 | 4.44 |
1331 | 1617 | 4.625028 | ACCAGTTAGTAGTTCGTCAAACC | 58.375 | 43.478 | 0.00 | 0.00 | 38.76 | 3.27 |
1332 | 1618 | 7.148689 | CCAATACCAGTTAGTAGTTCGTCAAAC | 60.149 | 40.741 | 0.00 | 0.00 | 38.21 | 2.93 |
1333 | 1619 | 6.869913 | CCAATACCAGTTAGTAGTTCGTCAAA | 59.130 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
1334 | 1620 | 6.209192 | TCCAATACCAGTTAGTAGTTCGTCAA | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1335 | 1621 | 5.711506 | TCCAATACCAGTTAGTAGTTCGTCA | 59.288 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1336 | 1622 | 6.127786 | ACTCCAATACCAGTTAGTAGTTCGTC | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
1337 | 1623 | 5.713861 | ACTCCAATACCAGTTAGTAGTTCGT | 59.286 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1338 | 1624 | 6.205101 | ACTCCAATACCAGTTAGTAGTTCG | 57.795 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1339 | 1625 | 7.417229 | GGGTACTCCAATACCAGTTAGTAGTTC | 60.417 | 44.444 | 4.45 | 0.00 | 45.72 | 3.01 |
1340 | 1626 | 6.382282 | GGGTACTCCAATACCAGTTAGTAGTT | 59.618 | 42.308 | 4.45 | 0.00 | 45.72 | 2.24 |
1341 | 1627 | 5.896106 | GGGTACTCCAATACCAGTTAGTAGT | 59.104 | 44.000 | 4.45 | 0.00 | 45.72 | 2.73 |
1342 | 1628 | 6.040616 | CAGGGTACTCCAATACCAGTTAGTAG | 59.959 | 46.154 | 4.45 | 0.00 | 45.72 | 2.57 |
1383 | 1764 | 5.389520 | TGAGAGCCAGTAGTGCTAGATATT | 58.610 | 41.667 | 0.00 | 0.00 | 39.69 | 1.28 |
1404 | 1785 | 1.063190 | ACGGAGGGAGTACCATGATGA | 60.063 | 52.381 | 0.00 | 0.00 | 43.89 | 2.92 |
1412 | 1793 | 0.978907 | TTTTGGGACGGAGGGAGTAC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1413 | 1794 | 1.961133 | ATTTTGGGACGGAGGGAGTA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1414 | 1795 | 1.004394 | GAATTTTGGGACGGAGGGAGT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1415 | 1796 | 1.282157 | AGAATTTTGGGACGGAGGGAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1416 | 1797 | 1.368374 | AGAATTTTGGGACGGAGGGA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1417 | 1798 | 1.818674 | CAAGAATTTTGGGACGGAGGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1418 | 1799 | 2.488153 | GACAAGAATTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1419 | 1800 | 3.412386 | AGACAAGAATTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
1420 | 1801 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
1421 | 1802 | 5.001232 | TCTAAGACAAGAATTTTGGGACGG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1422 | 1803 | 6.743575 | ATCTAAGACAAGAATTTTGGGACG | 57.256 | 37.500 | 5.68 | 0.00 | 0.00 | 4.79 |
1423 | 1804 | 8.360390 | ACAAATCTAAGACAAGAATTTTGGGAC | 58.640 | 33.333 | 0.00 | 0.00 | 33.04 | 4.46 |
1424 | 1805 | 8.477419 | ACAAATCTAAGACAAGAATTTTGGGA | 57.523 | 30.769 | 0.00 | 0.00 | 33.04 | 4.37 |
1425 | 1806 | 8.579863 | AGACAAATCTAAGACAAGAATTTTGGG | 58.420 | 33.333 | 0.00 | 0.00 | 33.04 | 4.12 |
1433 | 1814 | 9.582431 | CCGTATTTAGACAAATCTAAGACAAGA | 57.418 | 33.333 | 9.81 | 0.00 | 45.93 | 3.02 |
1434 | 1815 | 9.582431 | TCCGTATTTAGACAAATCTAAGACAAG | 57.418 | 33.333 | 9.81 | 3.88 | 45.93 | 3.16 |
1436 | 1817 | 9.529325 | CATCCGTATTTAGACAAATCTAAGACA | 57.471 | 33.333 | 9.81 | 0.00 | 45.93 | 3.41 |
1437 | 1818 | 9.530633 | ACATCCGTATTTAGACAAATCTAAGAC | 57.469 | 33.333 | 0.00 | 0.83 | 45.93 | 3.01 |
1442 | 1823 | 9.698309 | CTGATACATCCGTATTTAGACAAATCT | 57.302 | 33.333 | 0.00 | 0.00 | 38.48 | 2.40 |
1443 | 1824 | 8.926710 | CCTGATACATCCGTATTTAGACAAATC | 58.073 | 37.037 | 0.00 | 0.00 | 38.48 | 2.17 |
1444 | 1825 | 8.429641 | ACCTGATACATCCGTATTTAGACAAAT | 58.570 | 33.333 | 0.00 | 0.00 | 38.48 | 2.32 |
1445 | 1826 | 7.788026 | ACCTGATACATCCGTATTTAGACAAA | 58.212 | 34.615 | 0.00 | 0.00 | 38.48 | 2.83 |
1446 | 1827 | 7.068962 | TGACCTGATACATCCGTATTTAGACAA | 59.931 | 37.037 | 0.00 | 0.00 | 38.48 | 3.18 |
1447 | 1828 | 6.548251 | TGACCTGATACATCCGTATTTAGACA | 59.452 | 38.462 | 0.00 | 0.00 | 38.48 | 3.41 |
1448 | 1829 | 6.862090 | GTGACCTGATACATCCGTATTTAGAC | 59.138 | 42.308 | 0.00 | 0.00 | 38.48 | 2.59 |
1449 | 1830 | 6.293790 | CGTGACCTGATACATCCGTATTTAGA | 60.294 | 42.308 | 0.00 | 0.00 | 38.48 | 2.10 |
1450 | 1831 | 5.856986 | CGTGACCTGATACATCCGTATTTAG | 59.143 | 44.000 | 0.00 | 0.00 | 38.48 | 1.85 |
1451 | 1832 | 5.300034 | ACGTGACCTGATACATCCGTATTTA | 59.700 | 40.000 | 0.00 | 0.00 | 38.48 | 1.40 |
1452 | 1833 | 4.098960 | ACGTGACCTGATACATCCGTATTT | 59.901 | 41.667 | 0.00 | 0.00 | 38.48 | 1.40 |
1453 | 1834 | 3.635373 | ACGTGACCTGATACATCCGTATT | 59.365 | 43.478 | 0.00 | 0.00 | 38.48 | 1.89 |
1454 | 1835 | 3.220110 | ACGTGACCTGATACATCCGTAT | 58.780 | 45.455 | 0.00 | 0.00 | 41.16 | 3.06 |
1455 | 1836 | 2.646930 | ACGTGACCTGATACATCCGTA | 58.353 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1456 | 1837 | 1.471119 | ACGTGACCTGATACATCCGT | 58.529 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1457 | 1838 | 2.579207 | AACGTGACCTGATACATCCG | 57.421 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1458 | 1839 | 5.416947 | ACTAAAACGTGACCTGATACATCC | 58.583 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1459 | 1840 | 8.644318 | AATACTAAAACGTGACCTGATACATC | 57.356 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
1460 | 1841 | 9.745880 | CTAATACTAAAACGTGACCTGATACAT | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1461 | 1842 | 8.192774 | CCTAATACTAAAACGTGACCTGATACA | 58.807 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1462 | 1843 | 8.193438 | ACCTAATACTAAAACGTGACCTGATAC | 58.807 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1463 | 1844 | 8.297470 | ACCTAATACTAAAACGTGACCTGATA | 57.703 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
1464 | 1845 | 7.179076 | ACCTAATACTAAAACGTGACCTGAT | 57.821 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1465 | 1846 | 6.594788 | ACCTAATACTAAAACGTGACCTGA | 57.405 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1466 | 1847 | 7.315142 | TGTACCTAATACTAAAACGTGACCTG | 58.685 | 38.462 | 0.00 | 0.00 | 34.56 | 4.00 |
1467 | 1848 | 7.466746 | TGTACCTAATACTAAAACGTGACCT | 57.533 | 36.000 | 0.00 | 0.00 | 34.56 | 3.85 |
1468 | 1849 | 7.436376 | GGATGTACCTAATACTAAAACGTGACC | 59.564 | 40.741 | 0.00 | 0.00 | 34.56 | 4.02 |
1469 | 1850 | 7.166473 | CGGATGTACCTAATACTAAAACGTGAC | 59.834 | 40.741 | 0.00 | 0.00 | 34.56 | 3.67 |
1470 | 1851 | 7.148086 | ACGGATGTACCTAATACTAAAACGTGA | 60.148 | 37.037 | 0.00 | 0.00 | 34.56 | 4.35 |
1471 | 1852 | 6.974622 | ACGGATGTACCTAATACTAAAACGTG | 59.025 | 38.462 | 0.00 | 0.00 | 34.56 | 4.49 |
1472 | 1853 | 7.100458 | ACGGATGTACCTAATACTAAAACGT | 57.900 | 36.000 | 0.00 | 0.00 | 34.56 | 3.99 |
1473 | 1854 | 9.334693 | GATACGGATGTACCTAATACTAAAACG | 57.665 | 37.037 | 0.00 | 0.00 | 34.56 | 3.60 |
1479 | 1860 | 8.600668 | TGTCTAGATACGGATGTACCTAATACT | 58.399 | 37.037 | 0.00 | 0.00 | 34.56 | 2.12 |
1480 | 1861 | 8.783833 | TGTCTAGATACGGATGTACCTAATAC | 57.216 | 38.462 | 0.00 | 0.00 | 36.31 | 1.89 |
1481 | 1862 | 9.797642 | TTTGTCTAGATACGGATGTACCTAATA | 57.202 | 33.333 | 0.00 | 0.00 | 36.31 | 0.98 |
1482 | 1863 | 8.701908 | TTTGTCTAGATACGGATGTACCTAAT | 57.298 | 34.615 | 0.00 | 0.00 | 36.31 | 1.73 |
1483 | 1864 | 8.701908 | ATTTGTCTAGATACGGATGTACCTAA | 57.298 | 34.615 | 0.00 | 0.00 | 36.31 | 2.69 |
1484 | 1865 | 9.970553 | ATATTTGTCTAGATACGGATGTACCTA | 57.029 | 33.333 | 0.00 | 0.00 | 36.31 | 3.08 |
1485 | 1866 | 8.880991 | ATATTTGTCTAGATACGGATGTACCT | 57.119 | 34.615 | 0.00 | 0.00 | 36.31 | 3.08 |
1504 | 1885 | 9.289303 | CGTCCCAAAATTCTTGTCTTATATTTG | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1505 | 1886 | 8.466798 | CCGTCCCAAAATTCTTGTCTTATATTT | 58.533 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1506 | 1887 | 7.832187 | TCCGTCCCAAAATTCTTGTCTTATATT | 59.168 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
1507 | 1888 | 7.343357 | TCCGTCCCAAAATTCTTGTCTTATAT | 58.657 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
1508 | 1889 | 6.713276 | TCCGTCCCAAAATTCTTGTCTTATA | 58.287 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1509 | 1890 | 5.566469 | TCCGTCCCAAAATTCTTGTCTTAT | 58.434 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
1510 | 1891 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
1511 | 1892 | 3.821033 | CTCCGTCCCAAAATTCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1512 | 1893 | 3.412386 | CTCCGTCCCAAAATTCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1513 | 1894 | 2.488153 | CCTCCGTCCCAAAATTCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1514 | 1895 | 2.514803 | CCTCCGTCCCAAAATTCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1515 | 1896 | 1.818674 | CCCTCCGTCCCAAAATTCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1516 | 1897 | 1.708551 | TCCCTCCGTCCCAAAATTCTT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1517 | 1898 | 1.282157 | CTCCCTCCGTCCCAAAATTCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
1518 | 1899 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
1519 | 1900 | 1.073098 | ACTCCCTCCGTCCCAAAATT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1520 | 1901 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1521 | 1902 | 1.961133 | ATACTCCCTCCGTCCCAAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1522 | 1903 | 2.852714 | TATACTCCCTCCGTCCCAAA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1523 | 1904 | 2.816712 | CGATATACTCCCTCCGTCCCAA | 60.817 | 54.545 | 0.00 | 0.00 | 0.00 | 4.12 |
1524 | 1905 | 1.271762 | CGATATACTCCCTCCGTCCCA | 60.272 | 57.143 | 0.00 | 0.00 | 0.00 | 4.37 |
1525 | 1906 | 1.461559 | CGATATACTCCCTCCGTCCC | 58.538 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1526 | 1907 | 1.271817 | ACCGATATACTCCCTCCGTCC | 60.272 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
1527 | 1908 | 2.197283 | ACCGATATACTCCCTCCGTC | 57.803 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1528 | 1909 | 3.009916 | ACATACCGATATACTCCCTCCGT | 59.990 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
1529 | 1910 | 3.377485 | CACATACCGATATACTCCCTCCG | 59.623 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
1530 | 1911 | 4.342359 | ACACATACCGATATACTCCCTCC | 58.658 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1531 | 1912 | 5.979288 | AACACATACCGATATACTCCCTC | 57.021 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1532 | 1913 | 7.008941 | ACTTAACACATACCGATATACTCCCT | 58.991 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
1533 | 1914 | 7.088905 | CACTTAACACATACCGATATACTCCC | 58.911 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
1534 | 1915 | 7.655490 | ACACTTAACACATACCGATATACTCC | 58.345 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
1535 | 1916 | 9.178427 | GAACACTTAACACATACCGATATACTC | 57.822 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1536 | 1917 | 8.910944 | AGAACACTTAACACATACCGATATACT | 58.089 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1543 | 1924 | 4.753107 | ACCAAGAACACTTAACACATACCG | 59.247 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1663 | 2044 | 2.493278 | AGGGCATCAACAAATACAGTGC | 59.507 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1804 | 2210 | 4.761739 | CACAGGTGTGGAGTTTTGTGATAT | 59.238 | 41.667 | 1.90 | 0.00 | 42.10 | 1.63 |
1848 | 2254 | 8.449397 | CAGATAAATATCTAGAATGCAGCAACC | 58.551 | 37.037 | 0.00 | 0.00 | 40.91 | 3.77 |
1962 | 2368 | 1.881973 | GTTGAGCACATCTGAGCCAAA | 59.118 | 47.619 | 0.00 | 0.00 | 31.86 | 3.28 |
2056 | 2771 | 4.917385 | TGCCACTATGAAAAAGCCTAAGA | 58.083 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2438 | 3238 | 7.280876 | TGACCAATATCAGCAGCTTTAACTAAG | 59.719 | 37.037 | 0.00 | 0.00 | 36.90 | 2.18 |
2732 | 3536 | 3.203716 | TGCAAAAATGAGTGCATGCAAA | 58.796 | 36.364 | 24.58 | 11.85 | 45.52 | 3.68 |
3037 | 3843 | 4.388485 | ACGCAATCACTATAATGGCATGA | 58.612 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
3097 | 3903 | 7.160547 | TGATACAAAACCTATGACGTCAGTA | 57.839 | 36.000 | 24.41 | 16.80 | 0.00 | 2.74 |
3100 | 3906 | 6.635755 | TCATGATACAAAACCTATGACGTCA | 58.364 | 36.000 | 22.48 | 22.48 | 0.00 | 4.35 |
3172 | 4004 | 3.938963 | CGTAGACAGGTTGGCATACAAAT | 59.061 | 43.478 | 0.00 | 0.00 | 41.58 | 2.32 |
3201 | 4033 | 8.129211 | CCACCTTCTACAAACAAGTTAAAGAAG | 58.871 | 37.037 | 16.76 | 16.76 | 38.65 | 2.85 |
3404 | 4250 | 1.061131 | CGCTTAATTCACCAGACTGCG | 59.939 | 52.381 | 0.00 | 0.00 | 35.22 | 5.18 |
3408 | 4254 | 4.870426 | TCTGAATCGCTTAATTCACCAGAC | 59.130 | 41.667 | 0.00 | 0.00 | 39.98 | 3.51 |
3411 | 4257 | 5.427378 | TGATCTGAATCGCTTAATTCACCA | 58.573 | 37.500 | 0.00 | 0.84 | 39.98 | 4.17 |
3435 | 4286 | 7.595130 | CCTTGCTTGGTAAAAATACACTTTCTC | 59.405 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
3529 | 4384 | 3.434167 | CCTTATGACCTCTTCCACCATGG | 60.434 | 52.174 | 11.19 | 11.19 | 39.43 | 3.66 |
3571 | 4426 | 3.960102 | ACTGGAGTGCAAAATTCAGGAAA | 59.040 | 39.130 | 7.76 | 0.00 | 0.00 | 3.13 |
3596 | 4451 | 4.211794 | TCAAATTCGTCGTTGGAAGTAACC | 59.788 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3605 | 4460 | 7.059817 | GTGATATCTCATCAAATTCGTCGTTG | 58.940 | 38.462 | 3.98 | 0.00 | 32.98 | 4.10 |
3645 | 4500 | 0.104855 | TATCTTCTCGCGCATTGGCT | 59.895 | 50.000 | 8.75 | 0.00 | 38.10 | 4.75 |
3653 | 4508 | 1.734047 | GCTGCCCTATATCTTCTCGCG | 60.734 | 57.143 | 0.00 | 0.00 | 0.00 | 5.87 |
3729 | 4584 | 9.219603 | TCAAATCTATCAGAGTTGTACCAAAAG | 57.780 | 33.333 | 13.99 | 0.00 | 46.73 | 2.27 |
3791 | 4646 | 8.156820 | AGAATGGTTACTTATATGCACATGCTA | 58.843 | 33.333 | 5.31 | 0.00 | 42.66 | 3.49 |
3876 | 4731 | 8.394877 | TGAATATACAAGAAAAACATACGCAGG | 58.605 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
3877 | 4732 | 9.935682 | ATGAATATACAAGAAAAACATACGCAG | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 5.18 |
3901 | 4756 | 5.873712 | AGAGAACATGCTCAGAAGTACAATG | 59.126 | 40.000 | 0.00 | 0.00 | 37.37 | 2.82 |
3904 | 4759 | 5.474578 | AAGAGAACATGCTCAGAAGTACA | 57.525 | 39.130 | 0.00 | 0.00 | 37.37 | 2.90 |
3968 | 4824 | 2.701423 | TGAGGTACAAACAGCCACACTA | 59.299 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
4010 | 4866 | 5.950549 | AGGAAAGAGTGCAAATCAAGATCAT | 59.049 | 36.000 | 0.00 | 0.00 | 30.01 | 2.45 |
4013 | 4869 | 4.704057 | GGAGGAAAGAGTGCAAATCAAGAT | 59.296 | 41.667 | 0.00 | 0.00 | 30.01 | 2.40 |
4026 | 4882 | 5.836358 | ACTACAAGGCTATAGGAGGAAAGAG | 59.164 | 44.000 | 1.04 | 0.00 | 0.00 | 2.85 |
4037 | 4893 | 2.115427 | TGGCAGCACTACAAGGCTATA | 58.885 | 47.619 | 0.00 | 0.00 | 38.56 | 1.31 |
4038 | 4894 | 0.911769 | TGGCAGCACTACAAGGCTAT | 59.088 | 50.000 | 0.00 | 0.00 | 38.56 | 2.97 |
4061 | 4917 | 0.321653 | CCACCTAGTTCCGCTTTGCT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4062 | 4918 | 0.605589 | ACCACCTAGTTCCGCTTTGC | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
4063 | 4919 | 1.535462 | CAACCACCTAGTTCCGCTTTG | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
4066 | 4922 | 1.053424 | TTCAACCACCTAGTTCCGCT | 58.947 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4067 | 4923 | 1.886886 | TTTCAACCACCTAGTTCCGC | 58.113 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4068 | 4924 | 3.250040 | CACTTTTCAACCACCTAGTTCCG | 59.750 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4070 | 4926 | 3.004419 | GGCACTTTTCAACCACCTAGTTC | 59.996 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
4071 | 4927 | 2.956333 | GGCACTTTTCAACCACCTAGTT | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4072 | 4928 | 2.174854 | AGGCACTTTTCAACCACCTAGT | 59.825 | 45.455 | 0.00 | 0.00 | 27.25 | 2.57 |
4073 | 4929 | 2.554032 | CAGGCACTTTTCAACCACCTAG | 59.446 | 50.000 | 0.00 | 0.00 | 34.60 | 3.02 |
4074 | 4930 | 2.582052 | CAGGCACTTTTCAACCACCTA | 58.418 | 47.619 | 0.00 | 0.00 | 34.60 | 3.08 |
4075 | 4931 | 1.402787 | CAGGCACTTTTCAACCACCT | 58.597 | 50.000 | 0.00 | 0.00 | 34.60 | 4.00 |
4077 | 4933 | 0.459489 | TGCAGGCACTTTTCAACCAC | 59.541 | 50.000 | 0.00 | 0.00 | 34.60 | 4.16 |
4082 | 5231 | 3.025924 | CCTCTGCAGGCACTTTTCA | 57.974 | 52.632 | 15.13 | 0.00 | 34.60 | 2.69 |
4097 | 5246 | 1.203287 | GATGTGGAAAAGCTTGGCCTC | 59.797 | 52.381 | 16.26 | 13.61 | 0.00 | 4.70 |
4135 | 5284 | 9.466497 | ACAAATATATGTCCAGATGAACACTTT | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4137 | 5286 | 9.547753 | GTACAAATATATGTCCAGATGAACACT | 57.452 | 33.333 | 0.00 | 0.00 | 34.75 | 3.55 |
4138 | 5287 | 9.547753 | AGTACAAATATATGTCCAGATGAACAC | 57.452 | 33.333 | 0.00 | 0.00 | 34.75 | 3.32 |
4139 | 5288 | 9.764363 | GAGTACAAATATATGTCCAGATGAACA | 57.236 | 33.333 | 0.00 | 0.00 | 34.75 | 3.18 |
4140 | 5289 | 9.764363 | TGAGTACAAATATATGTCCAGATGAAC | 57.236 | 33.333 | 0.00 | 0.00 | 34.75 | 3.18 |
4146 | 5328 | 6.863645 | CGGAGTGAGTACAAATATATGTCCAG | 59.136 | 42.308 | 0.00 | 0.00 | 34.75 | 3.86 |
4160 | 5342 | 2.935481 | ATTCCGAACGGAGTGAGTAC | 57.065 | 50.000 | 15.34 | 0.00 | 45.00 | 2.73 |
4161 | 5343 | 4.012374 | AGTAATTCCGAACGGAGTGAGTA | 58.988 | 43.478 | 15.34 | 3.20 | 45.00 | 2.59 |
4162 | 5344 | 2.824341 | AGTAATTCCGAACGGAGTGAGT | 59.176 | 45.455 | 15.34 | 6.81 | 45.00 | 3.41 |
4163 | 5345 | 3.436496 | GAGTAATTCCGAACGGAGTGAG | 58.564 | 50.000 | 15.34 | 0.00 | 45.00 | 3.51 |
4164 | 5346 | 2.159476 | CGAGTAATTCCGAACGGAGTGA | 60.159 | 50.000 | 15.34 | 3.95 | 45.00 | 3.41 |
4165 | 5347 | 2.182825 | CGAGTAATTCCGAACGGAGTG | 58.817 | 52.381 | 15.34 | 0.00 | 45.00 | 3.51 |
4167 | 5349 | 2.097142 | AGACGAGTAATTCCGAACGGAG | 59.903 | 50.000 | 15.34 | 5.60 | 46.06 | 4.63 |
4168 | 5350 | 2.086869 | AGACGAGTAATTCCGAACGGA | 58.913 | 47.619 | 12.04 | 12.04 | 43.52 | 4.69 |
4169 | 5351 | 2.556534 | AGACGAGTAATTCCGAACGG | 57.443 | 50.000 | 6.94 | 6.94 | 0.00 | 4.44 |
4170 | 5352 | 4.901814 | TCTTAGACGAGTAATTCCGAACG | 58.098 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
4171 | 5353 | 7.487189 | TCATTTCTTAGACGAGTAATTCCGAAC | 59.513 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
4172 | 5354 | 7.541162 | TCATTTCTTAGACGAGTAATTCCGAA | 58.459 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
4173 | 5355 | 7.092137 | TCATTTCTTAGACGAGTAATTCCGA | 57.908 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4174 | 5356 | 7.751047 | TTCATTTCTTAGACGAGTAATTCCG | 57.249 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4175 | 5357 | 9.099454 | ACATTCATTTCTTAGACGAGTAATTCC | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4233 | 5415 | 9.777575 | CCGTTCGGAATTACTTGTTATAAAAAT | 57.222 | 29.630 | 5.19 | 0.00 | 0.00 | 1.82 |
4234 | 5416 | 8.997323 | TCCGTTCGGAATTACTTGTTATAAAAA | 58.003 | 29.630 | 11.66 | 0.00 | 0.00 | 1.94 |
4235 | 5417 | 8.545229 | TCCGTTCGGAATTACTTGTTATAAAA | 57.455 | 30.769 | 11.66 | 0.00 | 0.00 | 1.52 |
4236 | 5418 | 7.278424 | CCTCCGTTCGGAATTACTTGTTATAAA | 59.722 | 37.037 | 14.79 | 0.00 | 33.41 | 1.40 |
4237 | 5419 | 6.757947 | CCTCCGTTCGGAATTACTTGTTATAA | 59.242 | 38.462 | 14.79 | 0.00 | 33.41 | 0.98 |
4238 | 5420 | 6.127366 | ACCTCCGTTCGGAATTACTTGTTATA | 60.127 | 38.462 | 14.79 | 0.00 | 33.41 | 0.98 |
4239 | 5421 | 5.114081 | CCTCCGTTCGGAATTACTTGTTAT | 58.886 | 41.667 | 14.79 | 0.00 | 33.41 | 1.89 |
4240 | 5422 | 4.021192 | ACCTCCGTTCGGAATTACTTGTTA | 60.021 | 41.667 | 14.79 | 0.00 | 33.41 | 2.41 |
4241 | 5423 | 3.244318 | ACCTCCGTTCGGAATTACTTGTT | 60.244 | 43.478 | 14.79 | 0.00 | 33.41 | 2.83 |
4242 | 5424 | 2.301009 | ACCTCCGTTCGGAATTACTTGT | 59.699 | 45.455 | 14.79 | 2.13 | 33.41 | 3.16 |
4243 | 5425 | 2.968675 | ACCTCCGTTCGGAATTACTTG | 58.031 | 47.619 | 14.79 | 1.97 | 33.41 | 3.16 |
4244 | 5426 | 3.766051 | ACTACCTCCGTTCGGAATTACTT | 59.234 | 43.478 | 14.79 | 0.00 | 33.41 | 2.24 |
4245 | 5427 | 3.359950 | ACTACCTCCGTTCGGAATTACT | 58.640 | 45.455 | 14.79 | 0.00 | 33.41 | 2.24 |
4246 | 5428 | 3.790152 | ACTACCTCCGTTCGGAATTAC | 57.210 | 47.619 | 14.79 | 0.00 | 33.41 | 1.89 |
4247 | 5429 | 4.526970 | ACTACTACCTCCGTTCGGAATTA | 58.473 | 43.478 | 14.79 | 8.02 | 33.41 | 1.40 |
4248 | 5430 | 3.359950 | ACTACTACCTCCGTTCGGAATT | 58.640 | 45.455 | 14.79 | 7.32 | 33.41 | 2.17 |
4249 | 5431 | 3.010200 | ACTACTACCTCCGTTCGGAAT | 57.990 | 47.619 | 14.79 | 8.76 | 33.41 | 3.01 |
4250 | 5432 | 2.496899 | ACTACTACCTCCGTTCGGAA | 57.503 | 50.000 | 14.79 | 0.04 | 33.41 | 4.30 |
4251 | 5433 | 3.470709 | CATACTACTACCTCCGTTCGGA | 58.529 | 50.000 | 13.34 | 13.34 | 0.00 | 4.55 |
4252 | 5434 | 2.031333 | GCATACTACTACCTCCGTTCGG | 60.031 | 54.545 | 4.74 | 4.74 | 0.00 | 4.30 |
4253 | 5435 | 2.615447 | TGCATACTACTACCTCCGTTCG | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4254 | 5436 | 4.037684 | ACATGCATACTACTACCTCCGTTC | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
4255 | 5437 | 3.958798 | ACATGCATACTACTACCTCCGTT | 59.041 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
4256 | 5438 | 3.563223 | ACATGCATACTACTACCTCCGT | 58.437 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
4257 | 5439 | 5.899120 | ATACATGCATACTACTACCTCCG | 57.101 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
4347 | 5530 | 7.070571 | TGACCCCAAATACAACAAAGAAAAGAT | 59.929 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
4348 | 5531 | 6.381420 | TGACCCCAAATACAACAAAGAAAAGA | 59.619 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
4349 | 5532 | 6.578023 | TGACCCCAAATACAACAAAGAAAAG | 58.422 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4367 | 5550 | 6.317391 | CAGAAGAAAGACAAATATCTGACCCC | 59.683 | 42.308 | 0.00 | 0.00 | 35.91 | 4.95 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.