Multiple sequence alignment - TraesCS7A01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G452200 chr7A 100.000 3137 0 0 1 3137 644858870 644855734 0.000000e+00 5794.0
1 TraesCS7A01G452200 chr7B 91.039 2656 151 19 520 3137 608478532 608475926 0.000000e+00 3506.0
2 TraesCS7A01G452200 chr7D 91.173 2549 133 28 632 3137 560713534 560711035 0.000000e+00 3376.0
3 TraesCS7A01G452200 chr7D 92.888 1856 96 10 1292 3137 560686912 560685083 0.000000e+00 2663.0
4 TraesCS7A01G452200 chr7D 93.202 1574 84 3 880 2430 560677153 560675580 0.000000e+00 2292.0
5 TraesCS7A01G452200 chr7D 91.494 435 19 5 880 1296 560696120 560695686 1.620000e-162 582.0
6 TraesCS7A01G452200 chr7D 92.361 288 19 1 2850 3137 560675563 560675279 1.050000e-109 407.0
7 TraesCS7A01G452200 chr7D 92.193 269 16 4 240 504 560713850 560713583 2.950000e-100 375.0
8 TraesCS7A01G452200 chr5D 76.335 1124 206 39 1062 2137 423535230 423534119 5.920000e-152 547.0
9 TraesCS7A01G452200 chr6D 85.421 535 60 12 2616 3137 34979382 34978853 9.900000e-150 540.0
10 TraesCS7A01G452200 chr6D 74.254 1072 236 29 1054 2104 24934057 24935109 6.260000e-112 414.0
11 TraesCS7A01G452200 chr6D 89.855 69 6 1 1041 1109 473115687 473115620 1.550000e-13 87.9
12 TraesCS7A01G452200 chr6A 87.284 464 52 5 2616 3077 39150092 39149634 9.970000e-145 523.0
13 TraesCS7A01G452200 chr6A 76.451 879 162 29 1268 2104 17947069 17946194 4.800000e-118 435.0
14 TraesCS7A01G452200 chr5B 75.712 1124 210 44 1062 2137 511372801 511371693 3.610000e-139 505.0
15 TraesCS7A01G452200 chr5B 91.453 234 20 0 1 234 703081813 703082046 3.900000e-84 322.0
16 TraesCS7A01G452200 chr6B 85.986 421 54 2 2616 3034 72187505 72187088 2.220000e-121 446.0
17 TraesCS7A01G452200 chr6B 93.671 237 15 0 1 237 35517719 35517955 3.850000e-94 355.0
18 TraesCS7A01G452200 chr6B 75.806 744 138 26 1041 1756 718597811 718597082 3.880000e-89 339.0
19 TraesCS7A01G452200 chr6B 73.723 940 174 41 1054 1929 718592545 718591615 1.830000e-77 300.0
20 TraesCS7A01G452200 chr1D 75.587 766 159 22 1013 1764 458872304 458873055 1.380000e-93 353.0
21 TraesCS7A01G452200 chr1B 93.249 237 16 0 1 237 394912175 394912411 1.790000e-92 350.0
22 TraesCS7A01G452200 chr1B 90.638 235 22 0 3 237 678560170 678560404 2.350000e-81 313.0
23 TraesCS7A01G452200 chr1A 75.325 770 163 24 1058 1812 551307451 551308208 8.330000e-91 344.0
24 TraesCS7A01G452200 chr3A 92.405 237 18 0 1 237 67905165 67905401 3.880000e-89 339.0
25 TraesCS7A01G452200 chr3A 86.441 236 32 0 2 237 63466404 63466639 3.100000e-65 259.0
26 TraesCS7A01G452200 chr3B 92.373 236 18 0 2 237 810144630 810144395 1.390000e-88 337.0
27 TraesCS7A01G452200 chr2B 91.949 236 19 0 2 237 534239789 534239554 6.480000e-87 331.0
28 TraesCS7A01G452200 chr5A 85.169 236 35 0 2 237 560596474 560596239 3.130000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G452200 chr7A 644855734 644858870 3136 True 5794.0 5794 100.0000 1 3137 1 chr7A.!!$R1 3136
1 TraesCS7A01G452200 chr7B 608475926 608478532 2606 True 3506.0 3506 91.0390 520 3137 1 chr7B.!!$R1 2617
2 TraesCS7A01G452200 chr7D 560685083 560686912 1829 True 2663.0 2663 92.8880 1292 3137 1 chr7D.!!$R1 1845
3 TraesCS7A01G452200 chr7D 560711035 560713850 2815 True 1875.5 3376 91.6830 240 3137 2 chr7D.!!$R4 2897
4 TraesCS7A01G452200 chr7D 560675279 560677153 1874 True 1349.5 2292 92.7815 880 3137 2 chr7D.!!$R3 2257
5 TraesCS7A01G452200 chr5D 423534119 423535230 1111 True 547.0 547 76.3350 1062 2137 1 chr5D.!!$R1 1075
6 TraesCS7A01G452200 chr6D 34978853 34979382 529 True 540.0 540 85.4210 2616 3137 1 chr6D.!!$R1 521
7 TraesCS7A01G452200 chr6D 24934057 24935109 1052 False 414.0 414 74.2540 1054 2104 1 chr6D.!!$F1 1050
8 TraesCS7A01G452200 chr6A 17946194 17947069 875 True 435.0 435 76.4510 1268 2104 1 chr6A.!!$R1 836
9 TraesCS7A01G452200 chr5B 511371693 511372801 1108 True 505.0 505 75.7120 1062 2137 1 chr5B.!!$R1 1075
10 TraesCS7A01G452200 chr6B 718597082 718597811 729 True 339.0 339 75.8060 1041 1756 1 chr6B.!!$R3 715
11 TraesCS7A01G452200 chr6B 718591615 718592545 930 True 300.0 300 73.7230 1054 1929 1 chr6B.!!$R2 875
12 TraesCS7A01G452200 chr1D 458872304 458873055 751 False 353.0 353 75.5870 1013 1764 1 chr1D.!!$F1 751
13 TraesCS7A01G452200 chr1A 551307451 551308208 757 False 344.0 344 75.3250 1058 1812 1 chr1A.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 446 0.036388 TCTTCTGGTAGCAAAGCCCG 60.036 55.0 0.0 0.0 0.0 6.13 F
509 512 0.179234 TCAAACAAGACCACCTCGCA 59.821 50.0 0.0 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1885 1.457346 CACATCTTGTGCTTCCTCCC 58.543 55.000 0.0 0.0 41.89 4.30 R
2431 2597 2.230660 GGAGACCCCTGTTTTGTCTTG 58.769 52.381 0.0 0.0 39.36 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.113860 TTTTGAGAATGAGAGGGCGG 57.886 50.000 0.00 0.00 0.00 6.13
25 26 0.253044 TTTGAGAATGAGAGGGCGGG 59.747 55.000 0.00 0.00 0.00 6.13
26 27 1.626356 TTGAGAATGAGAGGGCGGGG 61.626 60.000 0.00 0.00 0.00 5.73
27 28 2.770048 AGAATGAGAGGGCGGGGG 60.770 66.667 0.00 0.00 0.00 5.40
28 29 4.570874 GAATGAGAGGGCGGGGGC 62.571 72.222 0.00 0.00 0.00 5.80
40 41 4.982701 GGGGGCAACAGCAGCAGT 62.983 66.667 0.00 0.00 39.74 4.40
41 42 2.034066 GGGGCAACAGCAGCAGTA 59.966 61.111 0.00 0.00 39.74 2.74
42 43 1.603455 GGGGCAACAGCAGCAGTAA 60.603 57.895 0.00 0.00 39.74 2.24
43 44 1.581447 GGGCAACAGCAGCAGTAAC 59.419 57.895 0.00 0.00 39.74 2.50
44 45 1.581447 GGCAACAGCAGCAGTAACC 59.419 57.895 0.00 0.00 0.00 2.85
45 46 1.172180 GGCAACAGCAGCAGTAACCA 61.172 55.000 0.00 0.00 0.00 3.67
46 47 0.239347 GCAACAGCAGCAGTAACCAG 59.761 55.000 0.00 0.00 0.00 4.00
47 48 1.882912 CAACAGCAGCAGTAACCAGA 58.117 50.000 0.00 0.00 0.00 3.86
48 49 1.802960 CAACAGCAGCAGTAACCAGAG 59.197 52.381 0.00 0.00 0.00 3.35
49 50 1.342074 ACAGCAGCAGTAACCAGAGA 58.658 50.000 0.00 0.00 0.00 3.10
50 51 1.905215 ACAGCAGCAGTAACCAGAGAT 59.095 47.619 0.00 0.00 0.00 2.75
51 52 2.277969 CAGCAGCAGTAACCAGAGATG 58.722 52.381 0.00 0.00 0.00 2.90
52 53 2.093816 CAGCAGCAGTAACCAGAGATGA 60.094 50.000 0.00 0.00 0.00 2.92
53 54 2.093764 AGCAGCAGTAACCAGAGATGAC 60.094 50.000 0.00 0.00 0.00 3.06
54 55 2.354103 GCAGCAGTAACCAGAGATGACA 60.354 50.000 0.00 0.00 0.00 3.58
55 56 3.866066 GCAGCAGTAACCAGAGATGACAA 60.866 47.826 0.00 0.00 0.00 3.18
56 57 3.931468 CAGCAGTAACCAGAGATGACAAG 59.069 47.826 0.00 0.00 0.00 3.16
57 58 3.055530 AGCAGTAACCAGAGATGACAAGG 60.056 47.826 0.00 0.00 0.00 3.61
58 59 3.866651 CAGTAACCAGAGATGACAAGGG 58.133 50.000 0.00 0.00 0.00 3.95
59 60 2.840651 AGTAACCAGAGATGACAAGGGG 59.159 50.000 0.00 0.00 0.00 4.79
60 61 2.044793 AACCAGAGATGACAAGGGGA 57.955 50.000 0.00 0.00 0.00 4.81
61 62 1.577736 ACCAGAGATGACAAGGGGAG 58.422 55.000 0.00 0.00 0.00 4.30
62 63 0.835941 CCAGAGATGACAAGGGGAGG 59.164 60.000 0.00 0.00 0.00 4.30
63 64 1.577736 CAGAGATGACAAGGGGAGGT 58.422 55.000 0.00 0.00 0.00 3.85
64 65 1.912043 CAGAGATGACAAGGGGAGGTT 59.088 52.381 0.00 0.00 0.00 3.50
65 66 2.093235 CAGAGATGACAAGGGGAGGTTC 60.093 54.545 0.00 0.00 0.00 3.62
66 67 2.192263 GAGATGACAAGGGGAGGTTCT 58.808 52.381 0.00 0.00 0.00 3.01
67 68 2.573915 GAGATGACAAGGGGAGGTTCTT 59.426 50.000 0.00 0.00 0.00 2.52
68 69 2.307098 AGATGACAAGGGGAGGTTCTTG 59.693 50.000 0.00 0.00 44.14 3.02
69 70 0.771127 TGACAAGGGGAGGTTCTTGG 59.229 55.000 7.78 0.00 43.20 3.61
70 71 0.609406 GACAAGGGGAGGTTCTTGGC 60.609 60.000 7.78 1.03 43.20 4.52
71 72 1.360393 ACAAGGGGAGGTTCTTGGCA 61.360 55.000 7.78 0.00 43.20 4.92
72 73 0.610232 CAAGGGGAGGTTCTTGGCAG 60.610 60.000 0.00 0.00 37.35 4.85
73 74 2.361737 GGGGAGGTTCTTGGCAGC 60.362 66.667 0.00 0.00 0.00 5.25
74 75 2.361737 GGGAGGTTCTTGGCAGCC 60.362 66.667 3.66 3.66 0.00 4.85
75 76 2.361737 GGAGGTTCTTGGCAGCCC 60.362 66.667 9.64 0.00 0.00 5.19
76 77 2.436109 GAGGTTCTTGGCAGCCCA 59.564 61.111 9.64 0.00 40.06 5.36
86 87 3.062639 GCAGCCCAATGCACCTTT 58.937 55.556 0.00 0.00 45.77 3.11
87 88 1.372307 GCAGCCCAATGCACCTTTT 59.628 52.632 0.00 0.00 45.77 2.27
88 89 0.250424 GCAGCCCAATGCACCTTTTT 60.250 50.000 0.00 0.00 45.77 1.94
89 90 1.001860 GCAGCCCAATGCACCTTTTTA 59.998 47.619 0.00 0.00 45.77 1.52
90 91 2.687370 CAGCCCAATGCACCTTTTTAC 58.313 47.619 0.00 0.00 44.83 2.01
91 92 1.623311 AGCCCAATGCACCTTTTTACC 59.377 47.619 0.00 0.00 44.83 2.85
92 93 1.671556 GCCCAATGCACCTTTTTACCG 60.672 52.381 0.00 0.00 40.77 4.02
93 94 1.671556 CCCAATGCACCTTTTTACCGC 60.672 52.381 0.00 0.00 0.00 5.68
94 95 1.000283 CCAATGCACCTTTTTACCGCA 60.000 47.619 0.00 0.00 36.95 5.69
95 96 2.058057 CAATGCACCTTTTTACCGCAC 58.942 47.619 0.00 0.00 35.02 5.34
96 97 0.239879 ATGCACCTTTTTACCGCACG 59.760 50.000 0.00 0.00 35.02 5.34
97 98 1.728074 GCACCTTTTTACCGCACGC 60.728 57.895 0.00 0.00 0.00 5.34
98 99 1.081708 CACCTTTTTACCGCACGCC 60.082 57.895 0.00 0.00 0.00 5.68
99 100 2.174835 CCTTTTTACCGCACGCCG 59.825 61.111 0.00 0.00 0.00 6.46
100 101 2.609759 CCTTTTTACCGCACGCCGT 61.610 57.895 0.00 0.00 34.38 5.68
101 102 1.439693 CTTTTTACCGCACGCCGTG 60.440 57.895 13.95 13.95 36.51 4.94
111 112 3.376078 ACGCCGTGGACGTGGTAT 61.376 61.111 0.00 0.00 43.23 2.73
112 113 2.581409 CGCCGTGGACGTGGTATC 60.581 66.667 0.00 0.00 37.74 2.24
113 114 2.202837 GCCGTGGACGTGGTATCC 60.203 66.667 0.00 0.00 37.74 2.59
114 115 2.718073 GCCGTGGACGTGGTATCCT 61.718 63.158 0.00 0.00 37.13 3.24
115 116 1.436336 CCGTGGACGTGGTATCCTC 59.564 63.158 0.00 0.00 37.13 3.71
116 117 1.035932 CCGTGGACGTGGTATCCTCT 61.036 60.000 0.00 0.00 37.13 3.69
117 118 0.100682 CGTGGACGTGGTATCCTCTG 59.899 60.000 0.00 0.00 37.13 3.35
118 119 1.471119 GTGGACGTGGTATCCTCTGA 58.529 55.000 0.00 0.00 37.13 3.27
119 120 1.822990 GTGGACGTGGTATCCTCTGAA 59.177 52.381 0.00 0.00 37.13 3.02
120 121 2.100197 TGGACGTGGTATCCTCTGAAG 58.900 52.381 0.00 0.00 37.13 3.02
121 122 1.202428 GGACGTGGTATCCTCTGAAGC 60.202 57.143 0.00 0.00 33.03 3.86
122 123 1.751924 GACGTGGTATCCTCTGAAGCT 59.248 52.381 0.00 0.00 0.00 3.74
123 124 1.751924 ACGTGGTATCCTCTGAAGCTC 59.248 52.381 0.00 0.00 0.00 4.09
124 125 1.751351 CGTGGTATCCTCTGAAGCTCA 59.249 52.381 0.00 0.00 0.00 4.26
125 126 2.166459 CGTGGTATCCTCTGAAGCTCAA 59.834 50.000 0.00 0.00 0.00 3.02
126 127 3.736433 CGTGGTATCCTCTGAAGCTCAAG 60.736 52.174 0.00 0.00 0.00 3.02
127 128 2.169352 TGGTATCCTCTGAAGCTCAAGC 59.831 50.000 0.00 0.00 42.49 4.01
140 141 2.914908 TCAAGCGATGAGGGATGGA 58.085 52.632 0.00 0.00 33.04 3.41
141 142 0.465705 TCAAGCGATGAGGGATGGAC 59.534 55.000 0.00 0.00 33.04 4.02
142 143 0.467384 CAAGCGATGAGGGATGGACT 59.533 55.000 0.00 0.00 0.00 3.85
143 144 1.134280 CAAGCGATGAGGGATGGACTT 60.134 52.381 0.00 0.00 0.00 3.01
144 145 0.467384 AGCGATGAGGGATGGACTTG 59.533 55.000 0.00 0.00 0.00 3.16
145 146 0.179000 GCGATGAGGGATGGACTTGT 59.821 55.000 0.00 0.00 0.00 3.16
146 147 1.412710 GCGATGAGGGATGGACTTGTA 59.587 52.381 0.00 0.00 0.00 2.41
147 148 2.037772 GCGATGAGGGATGGACTTGTAT 59.962 50.000 0.00 0.00 0.00 2.29
148 149 3.495100 GCGATGAGGGATGGACTTGTATT 60.495 47.826 0.00 0.00 0.00 1.89
149 150 4.262463 GCGATGAGGGATGGACTTGTATTA 60.262 45.833 0.00 0.00 0.00 0.98
150 151 5.473931 CGATGAGGGATGGACTTGTATTAG 58.526 45.833 0.00 0.00 0.00 1.73
151 152 4.689612 TGAGGGATGGACTTGTATTAGC 57.310 45.455 0.00 0.00 0.00 3.09
152 153 4.037222 TGAGGGATGGACTTGTATTAGCA 58.963 43.478 0.00 0.00 0.00 3.49
153 154 4.473196 TGAGGGATGGACTTGTATTAGCAA 59.527 41.667 0.00 0.00 0.00 3.91
154 155 5.045213 TGAGGGATGGACTTGTATTAGCAAA 60.045 40.000 0.00 0.00 0.00 3.68
155 156 6.018433 AGGGATGGACTTGTATTAGCAAAT 57.982 37.500 0.00 0.00 0.00 2.32
156 157 6.435164 AGGGATGGACTTGTATTAGCAAATT 58.565 36.000 0.00 0.00 0.00 1.82
157 158 6.547510 AGGGATGGACTTGTATTAGCAAATTC 59.452 38.462 0.00 0.00 0.00 2.17
158 159 6.239036 GGGATGGACTTGTATTAGCAAATTCC 60.239 42.308 0.00 0.00 34.02 3.01
159 160 6.547510 GGATGGACTTGTATTAGCAAATTCCT 59.452 38.462 0.00 0.00 34.30 3.36
160 161 7.068716 GGATGGACTTGTATTAGCAAATTCCTT 59.931 37.037 0.00 0.00 34.30 3.36
161 162 7.156876 TGGACTTGTATTAGCAAATTCCTTG 57.843 36.000 0.00 0.00 34.30 3.61
162 163 6.152661 TGGACTTGTATTAGCAAATTCCTTGG 59.847 38.462 0.00 0.00 34.30 3.61
163 164 6.405842 GGACTTGTATTAGCAAATTCCTTGGG 60.406 42.308 0.00 0.00 35.38 4.12
164 165 5.105351 ACTTGTATTAGCAAATTCCTTGGGC 60.105 40.000 0.00 0.00 35.38 5.36
165 166 4.609301 TGTATTAGCAAATTCCTTGGGCT 58.391 39.130 0.00 0.00 38.55 5.19
166 167 5.022787 TGTATTAGCAAATTCCTTGGGCTT 58.977 37.500 0.00 0.00 36.10 4.35
167 168 5.483583 TGTATTAGCAAATTCCTTGGGCTTT 59.516 36.000 0.00 0.00 36.10 3.51
168 169 4.535526 TTAGCAAATTCCTTGGGCTTTC 57.464 40.909 0.00 0.00 36.10 2.62
169 170 1.625315 AGCAAATTCCTTGGGCTTTCC 59.375 47.619 0.00 0.00 35.38 3.13
170 171 1.625315 GCAAATTCCTTGGGCTTTCCT 59.375 47.619 0.00 0.00 35.38 3.36
171 172 2.831526 GCAAATTCCTTGGGCTTTCCTA 59.168 45.455 0.00 0.00 35.38 2.94
172 173 3.118992 GCAAATTCCTTGGGCTTTCCTAG 60.119 47.826 0.00 0.00 37.98 3.02
173 174 4.344104 CAAATTCCTTGGGCTTTCCTAGA 58.656 43.478 0.00 0.00 40.19 2.43
174 175 3.941704 ATTCCTTGGGCTTTCCTAGAG 57.058 47.619 0.00 0.00 40.19 2.43
175 176 2.344093 TCCTTGGGCTTTCCTAGAGT 57.656 50.000 0.00 0.00 40.19 3.24
176 177 2.632537 TCCTTGGGCTTTCCTAGAGTT 58.367 47.619 0.00 0.00 40.19 3.01
177 178 2.305927 TCCTTGGGCTTTCCTAGAGTTG 59.694 50.000 0.00 0.00 40.19 3.16
178 179 2.305927 CCTTGGGCTTTCCTAGAGTTGA 59.694 50.000 0.00 0.00 40.19 3.18
179 180 3.244911 CCTTGGGCTTTCCTAGAGTTGAA 60.245 47.826 0.00 0.00 40.19 2.69
180 181 4.398319 CTTGGGCTTTCCTAGAGTTGAAA 58.602 43.478 0.00 0.00 40.19 2.69
181 182 3.751518 TGGGCTTTCCTAGAGTTGAAAC 58.248 45.455 0.00 0.00 36.20 2.78
182 183 3.394606 TGGGCTTTCCTAGAGTTGAAACT 59.605 43.478 0.00 0.00 38.04 2.66
183 184 3.753797 GGGCTTTCCTAGAGTTGAAACTG 59.246 47.826 0.00 0.00 39.88 3.16
184 185 4.505039 GGGCTTTCCTAGAGTTGAAACTGA 60.505 45.833 0.00 0.00 39.88 3.41
185 186 5.063880 GGCTTTCCTAGAGTTGAAACTGAA 58.936 41.667 0.00 0.00 39.88 3.02
186 187 5.707764 GGCTTTCCTAGAGTTGAAACTGAAT 59.292 40.000 0.00 0.00 39.88 2.57
187 188 6.128145 GGCTTTCCTAGAGTTGAAACTGAATC 60.128 42.308 0.00 0.00 39.88 2.52
188 189 6.428159 GCTTTCCTAGAGTTGAAACTGAATCA 59.572 38.462 0.00 0.00 39.88 2.57
189 190 7.360776 GCTTTCCTAGAGTTGAAACTGAATCAG 60.361 40.741 8.98 8.98 39.88 2.90
190 191 6.918067 TCCTAGAGTTGAAACTGAATCAGA 57.082 37.500 18.20 0.00 39.88 3.27
191 192 6.692486 TCCTAGAGTTGAAACTGAATCAGAC 58.308 40.000 18.20 4.06 39.88 3.51
192 193 6.495181 TCCTAGAGTTGAAACTGAATCAGACT 59.505 38.462 18.20 9.22 39.88 3.24
193 194 6.811170 CCTAGAGTTGAAACTGAATCAGACTC 59.189 42.308 18.20 17.22 39.88 3.36
194 195 6.418057 AGAGTTGAAACTGAATCAGACTCT 57.582 37.500 19.57 19.57 39.88 3.24
195 196 7.531857 AGAGTTGAAACTGAATCAGACTCTA 57.468 36.000 22.23 11.17 40.00 2.43
196 197 7.375053 AGAGTTGAAACTGAATCAGACTCTAC 58.625 38.462 22.23 19.00 40.00 2.59
197 198 7.014711 AGAGTTGAAACTGAATCAGACTCTACA 59.985 37.037 22.23 9.97 40.00 2.74
198 199 7.500992 AGTTGAAACTGAATCAGACTCTACAA 58.499 34.615 18.20 10.55 37.98 2.41
199 200 7.439655 AGTTGAAACTGAATCAGACTCTACAAC 59.560 37.037 18.20 19.27 37.98 3.32
200 201 5.920840 TGAAACTGAATCAGACTCTACAACG 59.079 40.000 18.20 0.00 35.18 4.10
201 202 4.442375 ACTGAATCAGACTCTACAACGG 57.558 45.455 18.20 0.00 35.18 4.44
202 203 3.827302 ACTGAATCAGACTCTACAACGGT 59.173 43.478 18.20 0.00 35.18 4.83
203 204 4.169508 CTGAATCAGACTCTACAACGGTG 58.830 47.826 3.77 0.00 32.44 4.94
204 205 3.824443 TGAATCAGACTCTACAACGGTGA 59.176 43.478 7.88 0.00 0.00 4.02
205 206 4.462834 TGAATCAGACTCTACAACGGTGAT 59.537 41.667 7.88 0.00 0.00 3.06
206 207 5.650703 TGAATCAGACTCTACAACGGTGATA 59.349 40.000 7.88 0.00 0.00 2.15
207 208 5.759506 ATCAGACTCTACAACGGTGATAG 57.240 43.478 7.88 5.56 0.00 2.08
208 209 4.840271 TCAGACTCTACAACGGTGATAGA 58.160 43.478 7.88 9.90 0.00 1.98
209 210 5.250982 TCAGACTCTACAACGGTGATAGAA 58.749 41.667 7.88 0.00 0.00 2.10
210 211 5.123502 TCAGACTCTACAACGGTGATAGAAC 59.876 44.000 7.88 7.86 0.00 3.01
211 212 5.008331 AGACTCTACAACGGTGATAGAACA 58.992 41.667 7.88 0.00 0.00 3.18
212 213 5.475909 AGACTCTACAACGGTGATAGAACAA 59.524 40.000 7.88 0.00 0.00 2.83
213 214 6.153000 AGACTCTACAACGGTGATAGAACAAT 59.847 38.462 7.88 0.00 0.00 2.71
214 215 6.100004 ACTCTACAACGGTGATAGAACAATG 58.900 40.000 7.88 1.62 0.00 2.82
215 216 4.868171 TCTACAACGGTGATAGAACAATGC 59.132 41.667 7.88 0.00 0.00 3.56
216 217 3.674997 ACAACGGTGATAGAACAATGCT 58.325 40.909 7.88 0.00 0.00 3.79
217 218 3.684788 ACAACGGTGATAGAACAATGCTC 59.315 43.478 7.88 0.00 0.00 4.26
218 219 3.610040 ACGGTGATAGAACAATGCTCA 57.390 42.857 0.00 0.00 0.00 4.26
219 220 3.525537 ACGGTGATAGAACAATGCTCAG 58.474 45.455 0.00 0.00 0.00 3.35
220 221 2.868583 CGGTGATAGAACAATGCTCAGG 59.131 50.000 0.00 0.00 0.00 3.86
221 222 2.615912 GGTGATAGAACAATGCTCAGGC 59.384 50.000 0.00 0.00 39.26 4.85
222 223 2.615912 GTGATAGAACAATGCTCAGGCC 59.384 50.000 0.00 0.00 37.74 5.19
223 224 2.239402 TGATAGAACAATGCTCAGGCCA 59.761 45.455 5.01 0.00 37.74 5.36
224 225 2.877097 TAGAACAATGCTCAGGCCAA 57.123 45.000 5.01 0.00 37.74 4.52
225 226 1.999648 AGAACAATGCTCAGGCCAAA 58.000 45.000 5.01 0.00 37.74 3.28
226 227 2.318908 AGAACAATGCTCAGGCCAAAA 58.681 42.857 5.01 0.00 37.74 2.44
227 228 2.036346 AGAACAATGCTCAGGCCAAAAC 59.964 45.455 5.01 0.00 37.74 2.43
228 229 1.412079 ACAATGCTCAGGCCAAAACA 58.588 45.000 5.01 0.00 37.74 2.83
229 230 1.342174 ACAATGCTCAGGCCAAAACAG 59.658 47.619 5.01 0.00 37.74 3.16
230 231 1.614903 CAATGCTCAGGCCAAAACAGA 59.385 47.619 5.01 0.00 37.74 3.41
231 232 2.226962 ATGCTCAGGCCAAAACAGAT 57.773 45.000 5.01 0.00 37.74 2.90
232 233 1.250328 TGCTCAGGCCAAAACAGATG 58.750 50.000 5.01 0.00 37.74 2.90
233 234 0.529378 GCTCAGGCCAAAACAGATGG 59.471 55.000 5.01 0.00 41.08 3.51
234 235 1.915141 CTCAGGCCAAAACAGATGGT 58.085 50.000 5.01 0.00 40.23 3.55
235 236 1.542915 CTCAGGCCAAAACAGATGGTG 59.457 52.381 5.01 0.00 40.23 4.17
236 237 0.604578 CAGGCCAAAACAGATGGTGG 59.395 55.000 5.01 0.00 40.23 4.61
237 238 0.482446 AGGCCAAAACAGATGGTGGA 59.518 50.000 5.01 0.00 40.23 4.02
238 239 1.133199 AGGCCAAAACAGATGGTGGAA 60.133 47.619 5.01 0.00 40.23 3.53
239 240 1.000843 GGCCAAAACAGATGGTGGAAC 59.999 52.381 0.00 0.00 40.23 3.62
240 241 1.686052 GCCAAAACAGATGGTGGAACA 59.314 47.619 0.00 0.00 39.98 3.18
241 242 2.102252 GCCAAAACAGATGGTGGAACAA 59.898 45.455 0.00 0.00 44.16 2.83
242 243 3.431486 GCCAAAACAGATGGTGGAACAAA 60.431 43.478 0.00 0.00 44.16 2.83
243 244 4.764172 CCAAAACAGATGGTGGAACAAAA 58.236 39.130 0.00 0.00 44.16 2.44
244 245 4.810491 CCAAAACAGATGGTGGAACAAAAG 59.190 41.667 0.00 0.00 44.16 2.27
257 258 6.035650 GGTGGAACAAAAGTAAACTCAAAAGC 59.964 38.462 0.00 0.00 44.16 3.51
260 261 6.968335 GGAACAAAAGTAAACTCAAAAGCGTA 59.032 34.615 0.00 0.00 0.00 4.42
285 286 3.198409 AGACAATGCACTGAGACAACA 57.802 42.857 0.26 0.00 0.00 3.33
378 379 4.320494 GGAGCGAGTCAAATTCAACAATGT 60.320 41.667 0.00 0.00 0.00 2.71
398 401 1.372087 CGATGAAGGCCAAGCTGGTC 61.372 60.000 5.01 0.00 44.07 4.02
443 446 0.036388 TCTTCTGGTAGCAAAGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
444 447 0.321653 CTTCTGGTAGCAAAGCCCGT 60.322 55.000 0.00 0.00 0.00 5.28
445 448 0.605319 TTCTGGTAGCAAAGCCCGTG 60.605 55.000 0.00 0.00 0.00 4.94
455 458 2.992817 AAAGCCCGTGCATGGTCCAA 62.993 55.000 23.39 0.00 41.13 3.53
456 459 2.988684 GCCCGTGCATGGTCCAAA 60.989 61.111 23.39 0.00 37.47 3.28
467 470 3.555586 GCATGGTCCAAAACATCAGCTTT 60.556 43.478 0.00 0.00 0.00 3.51
492 495 4.785950 CGAAAGTCGCTCGGATCA 57.214 55.556 0.00 0.00 31.14 2.92
493 496 3.030209 CGAAAGTCGCTCGGATCAA 57.970 52.632 0.00 0.00 31.14 2.57
494 497 1.346365 CGAAAGTCGCTCGGATCAAA 58.654 50.000 0.00 0.00 31.14 2.69
495 498 1.059264 CGAAAGTCGCTCGGATCAAAC 59.941 52.381 0.00 0.00 31.14 2.93
496 499 2.066262 GAAAGTCGCTCGGATCAAACA 58.934 47.619 0.00 0.00 0.00 2.83
497 500 2.163818 AAGTCGCTCGGATCAAACAA 57.836 45.000 0.00 0.00 0.00 2.83
498 501 1.714794 AGTCGCTCGGATCAAACAAG 58.285 50.000 0.00 0.00 0.00 3.16
499 502 1.272490 AGTCGCTCGGATCAAACAAGA 59.728 47.619 0.00 0.00 0.00 3.02
500 503 1.390463 GTCGCTCGGATCAAACAAGAC 59.610 52.381 0.00 0.00 0.00 3.01
501 504 0.721718 CGCTCGGATCAAACAAGACC 59.278 55.000 0.00 0.00 0.00 3.85
502 505 1.808411 GCTCGGATCAAACAAGACCA 58.192 50.000 0.00 0.00 0.00 4.02
503 506 1.464997 GCTCGGATCAAACAAGACCAC 59.535 52.381 0.00 0.00 0.00 4.16
504 507 2.076863 CTCGGATCAAACAAGACCACC 58.923 52.381 0.00 0.00 0.00 4.61
505 508 1.697432 TCGGATCAAACAAGACCACCT 59.303 47.619 0.00 0.00 0.00 4.00
506 509 2.076863 CGGATCAAACAAGACCACCTC 58.923 52.381 0.00 0.00 0.00 3.85
507 510 2.076863 GGATCAAACAAGACCACCTCG 58.923 52.381 0.00 0.00 0.00 4.63
508 511 1.464997 GATCAAACAAGACCACCTCGC 59.535 52.381 0.00 0.00 0.00 5.03
509 512 0.179234 TCAAACAAGACCACCTCGCA 59.821 50.000 0.00 0.00 0.00 5.10
510 513 1.021202 CAAACAAGACCACCTCGCAA 58.979 50.000 0.00 0.00 0.00 4.85
511 514 1.403679 CAAACAAGACCACCTCGCAAA 59.596 47.619 0.00 0.00 0.00 3.68
512 515 1.308998 AACAAGACCACCTCGCAAAG 58.691 50.000 0.00 0.00 0.00 2.77
513 516 0.468226 ACAAGACCACCTCGCAAAGA 59.532 50.000 0.00 0.00 0.00 2.52
514 517 1.134220 ACAAGACCACCTCGCAAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
515 518 1.946768 CAAGACCACCTCGCAAAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
516 519 2.341846 AGACCACCTCGCAAAGAAAA 57.658 45.000 0.00 0.00 0.00 2.29
517 520 2.650322 AGACCACCTCGCAAAGAAAAA 58.350 42.857 0.00 0.00 0.00 1.94
616 620 1.202915 TGCAAATCTCAGCCCAGAACA 60.203 47.619 0.00 0.00 0.00 3.18
617 621 1.888512 GCAAATCTCAGCCCAGAACAA 59.111 47.619 0.00 0.00 0.00 2.83
627 631 1.340889 GCCCAGAACAATTGACTGCAA 59.659 47.619 22.12 0.00 38.60 4.08
631 635 4.218200 CCCAGAACAATTGACTGCAATACA 59.782 41.667 22.12 0.00 43.71 2.29
638 642 5.865552 ACAATTGACTGCAATACATTCTTGC 59.134 36.000 13.59 1.23 43.71 4.01
678 682 7.214467 TCAGCTCGAATTACCAATTTTTCTT 57.786 32.000 0.00 0.00 0.00 2.52
681 685 8.427774 CAGCTCGAATTACCAATTTTTCTTTTC 58.572 33.333 0.00 0.00 0.00 2.29
716 720 1.323271 TTGCCAAAAGGTGCCGTGAA 61.323 50.000 0.00 0.00 0.00 3.18
727 731 1.212751 GCCGTGAACAATGGGCTTC 59.787 57.895 0.00 0.00 42.29 3.86
732 736 1.153958 GAACAATGGGCTTCGCAGC 60.154 57.895 0.00 0.00 46.52 5.25
757 763 1.754226 GGGCTGTGAGGACAACAAAAA 59.246 47.619 0.00 0.00 0.00 1.94
801 807 3.871395 CCTAGCTCAGGCAGGCCC 61.871 72.222 6.70 0.00 41.70 5.80
830 836 1.803519 CGCACTCTGCTTCTCCGAC 60.804 63.158 0.00 0.00 42.25 4.79
870 876 4.357947 GACACACCAGCGAGCGGA 62.358 66.667 11.61 0.00 0.00 5.54
922 931 3.950794 TTGACCATCAGCCCGTCGC 62.951 63.158 0.00 0.00 37.98 5.19
1426 1496 2.218953 TGAACGGTCGGAGAATATGC 57.781 50.000 0.00 0.00 39.69 3.14
1486 1569 2.036428 CTGCGAGGAGGATGATGCCA 62.036 60.000 0.00 0.00 0.00 4.92
1765 1878 3.428063 TCCCTGAGATGGAGAAGGAAT 57.572 47.619 0.00 0.00 30.92 3.01
1768 1881 2.481854 CTGAGATGGAGAAGGAATGCG 58.518 52.381 0.00 0.00 0.00 4.73
1772 1885 1.091771 ATGGAGAAGGAATGCGTGCG 61.092 55.000 0.00 0.00 0.00 5.34
1820 1972 4.012374 GGACAAGAAGAGGATGAAATGCA 58.988 43.478 0.00 0.00 36.98 3.96
1923 2075 3.093057 GTCTGAGGACATAGGTGTGAGT 58.907 50.000 0.00 0.00 41.75 3.41
2118 2270 3.164028 GCTTGCTTCGAAAAAGCGT 57.836 47.368 22.31 0.00 45.80 5.07
2202 2354 5.879223 GCCTATATGCTGCAGTATCAGAAAT 59.121 40.000 21.26 10.99 36.19 2.17
2232 2386 5.242393 ACATATGGGCAAATTGTCTCTATGC 59.758 40.000 7.80 0.00 36.31 3.14
2364 2530 6.874288 ATATTATTGCTCTGTGCCTTCTTC 57.126 37.500 0.00 0.00 42.00 2.87
2384 2550 5.241728 TCTTCATGATGTACTCCGTAGATGG 59.758 44.000 8.33 0.00 0.00 3.51
2391 2557 2.781681 ACTCCGTAGATGGTTTTGGG 57.218 50.000 0.00 0.00 0.00 4.12
2409 2575 4.059773 TGGGAAGGCATTTTATGAACCT 57.940 40.909 0.00 0.00 0.00 3.50
2410 2576 5.199982 TGGGAAGGCATTTTATGAACCTA 57.800 39.130 0.00 0.00 0.00 3.08
2431 2597 8.011844 ACCTAGATTTATGGGAAAGAATTTGC 57.988 34.615 0.00 0.00 46.47 3.68
2521 2687 3.770388 GTGCCTAAGAACCTTCTCCTAGT 59.230 47.826 0.00 0.00 36.28 2.57
2601 2769 8.514594 CACTCTGGTTGTTGTTTCATAATACAT 58.485 33.333 0.00 0.00 0.00 2.29
2623 2791 8.034058 ACATTAGAGACAAGTTTTGCATCTAC 57.966 34.615 0.00 0.00 33.41 2.59
2652 2822 7.558807 TGGTAAGAATTTGATGATCTCTGCAAT 59.441 33.333 0.00 0.00 0.00 3.56
2660 2830 3.998913 TGATCTCTGCAATGGTTACCA 57.001 42.857 6.53 6.53 38.19 3.25
2663 2833 3.998913 TCTCTGCAATGGTTACCATCA 57.001 42.857 18.03 11.12 44.40 3.07
2685 2855 1.359130 CCTGGAAAATTCTCCTGGGGT 59.641 52.381 14.52 0.00 46.10 4.95
2700 2870 3.181429 CCTGGGGTGCTATTCATTACCAT 60.181 47.826 0.00 0.00 34.89 3.55
2736 2907 4.522022 CAGGTTCCAAGAAATTCTTCAGCT 59.478 41.667 5.09 5.32 33.78 4.24
2784 2957 6.377712 GGGAGCTACTCACCTAATATATCGTT 59.622 42.308 0.00 0.00 31.08 3.85
2791 2964 8.744008 ACTCACCTAATATATCGTTTCGATTG 57.256 34.615 9.80 0.94 44.59 2.67
2797 2970 9.103048 CCTAATATATCGTTTCGATTGTTTTGC 57.897 33.333 9.80 0.00 44.59 3.68
2844 3017 5.954757 TCTTTTATGGTGAAGTGGGGTTTA 58.045 37.500 0.00 0.00 0.00 2.01
2845 3018 6.374588 TCTTTTATGGTGAAGTGGGGTTTAA 58.625 36.000 0.00 0.00 0.00 1.52
2846 3019 6.839657 TCTTTTATGGTGAAGTGGGGTTTAAA 59.160 34.615 0.00 0.00 0.00 1.52
2847 3020 7.344871 TCTTTTATGGTGAAGTGGGGTTTAAAA 59.655 33.333 0.00 0.00 0.00 1.52
2848 3021 7.619512 TTTATGGTGAAGTGGGGTTTAAAAT 57.380 32.000 0.00 0.00 0.00 1.82
2849 3022 4.946478 TGGTGAAGTGGGGTTTAAAATG 57.054 40.909 0.00 0.00 0.00 2.32
2850 3023 4.290942 TGGTGAAGTGGGGTTTAAAATGT 58.709 39.130 0.00 0.00 0.00 2.71
2851 3024 4.717280 TGGTGAAGTGGGGTTTAAAATGTT 59.283 37.500 0.00 0.00 0.00 2.71
2852 3025 5.189934 TGGTGAAGTGGGGTTTAAAATGTTT 59.810 36.000 0.00 0.00 0.00 2.83
2886 3068 0.176910 GCTTCTCTTTCCTCCCCTCG 59.823 60.000 0.00 0.00 0.00 4.63
2893 3075 1.125093 TTTCCTCCCCTCGTGCAAGA 61.125 55.000 1.47 1.47 0.00 3.02
2897 3079 2.046892 CCCCTCGTGCAAGACTGG 60.047 66.667 0.00 2.40 0.00 4.00
2906 3088 2.545952 CGTGCAAGACTGGTTCACTACT 60.546 50.000 0.00 0.00 0.00 2.57
2907 3089 3.060602 GTGCAAGACTGGTTCACTACTC 58.939 50.000 0.00 0.00 0.00 2.59
2932 3114 5.107683 GGAAATATTCAGCTCGTTGAGATCG 60.108 44.000 0.00 0.00 0.00 3.69
2942 3124 2.164422 TCGTTGAGATCGCACTTGAGAT 59.836 45.455 0.00 0.00 37.28 2.75
3082 3270 0.678048 GCCTTACAGGAGTTGGCTGG 60.678 60.000 0.00 0.00 40.61 4.85
3129 3325 5.487488 TGTTTGGGTCTTCACTACCTATGAT 59.513 40.000 0.00 0.00 37.18 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.436417 CCGCCCTCTCATTCTCAAAAA 58.564 47.619 0.00 0.00 0.00 1.94
5 6 1.340017 CCCGCCCTCTCATTCTCAAAA 60.340 52.381 0.00 0.00 0.00 2.44
6 7 0.253044 CCCGCCCTCTCATTCTCAAA 59.747 55.000 0.00 0.00 0.00 2.69
7 8 1.626356 CCCCGCCCTCTCATTCTCAA 61.626 60.000 0.00 0.00 0.00 3.02
8 9 2.066393 CCCCGCCCTCTCATTCTCA 61.066 63.158 0.00 0.00 0.00 3.27
9 10 2.812619 CCCCCGCCCTCTCATTCTC 61.813 68.421 0.00 0.00 0.00 2.87
10 11 2.770048 CCCCCGCCCTCTCATTCT 60.770 66.667 0.00 0.00 0.00 2.40
11 12 4.570874 GCCCCCGCCCTCTCATTC 62.571 72.222 0.00 0.00 0.00 2.67
23 24 3.567579 TACTGCTGCTGTTGCCCCC 62.568 63.158 17.29 0.00 38.71 5.40
24 25 1.603455 TTACTGCTGCTGTTGCCCC 60.603 57.895 17.29 0.00 38.71 5.80
25 26 1.581447 GTTACTGCTGCTGTTGCCC 59.419 57.895 17.29 0.55 38.71 5.36
26 27 1.172180 TGGTTACTGCTGCTGTTGCC 61.172 55.000 17.29 17.87 38.71 4.52
27 28 0.239347 CTGGTTACTGCTGCTGTTGC 59.761 55.000 17.29 10.28 40.20 4.17
28 29 1.802960 CTCTGGTTACTGCTGCTGTTG 59.197 52.381 17.29 4.29 0.00 3.33
29 30 1.694150 TCTCTGGTTACTGCTGCTGTT 59.306 47.619 17.29 2.63 0.00 3.16
30 31 1.342074 TCTCTGGTTACTGCTGCTGT 58.658 50.000 16.37 16.37 0.00 4.40
31 32 2.093816 TCATCTCTGGTTACTGCTGCTG 60.094 50.000 4.89 4.89 0.00 4.41
32 33 2.093764 GTCATCTCTGGTTACTGCTGCT 60.094 50.000 0.00 0.00 0.00 4.24
33 34 2.275318 GTCATCTCTGGTTACTGCTGC 58.725 52.381 0.00 0.00 0.00 5.25
34 35 3.599730 TGTCATCTCTGGTTACTGCTG 57.400 47.619 0.00 0.00 0.00 4.41
35 36 3.055530 CCTTGTCATCTCTGGTTACTGCT 60.056 47.826 0.00 0.00 0.00 4.24
36 37 3.265791 CCTTGTCATCTCTGGTTACTGC 58.734 50.000 0.00 0.00 0.00 4.40
37 38 3.369892 CCCCTTGTCATCTCTGGTTACTG 60.370 52.174 0.00 0.00 0.00 2.74
38 39 2.840651 CCCCTTGTCATCTCTGGTTACT 59.159 50.000 0.00 0.00 0.00 2.24
39 40 2.838202 TCCCCTTGTCATCTCTGGTTAC 59.162 50.000 0.00 0.00 0.00 2.50
40 41 3.107601 CTCCCCTTGTCATCTCTGGTTA 58.892 50.000 0.00 0.00 0.00 2.85
41 42 1.912043 CTCCCCTTGTCATCTCTGGTT 59.088 52.381 0.00 0.00 0.00 3.67
42 43 1.577736 CTCCCCTTGTCATCTCTGGT 58.422 55.000 0.00 0.00 0.00 4.00
43 44 0.835941 CCTCCCCTTGTCATCTCTGG 59.164 60.000 0.00 0.00 0.00 3.86
44 45 1.577736 ACCTCCCCTTGTCATCTCTG 58.422 55.000 0.00 0.00 0.00 3.35
45 46 2.192263 GAACCTCCCCTTGTCATCTCT 58.808 52.381 0.00 0.00 0.00 3.10
46 47 2.192263 AGAACCTCCCCTTGTCATCTC 58.808 52.381 0.00 0.00 0.00 2.75
47 48 2.307098 CAAGAACCTCCCCTTGTCATCT 59.693 50.000 0.00 0.00 36.08 2.90
48 49 2.619074 CCAAGAACCTCCCCTTGTCATC 60.619 54.545 0.00 0.00 38.39 2.92
49 50 1.355720 CCAAGAACCTCCCCTTGTCAT 59.644 52.381 0.00 0.00 38.39 3.06
50 51 0.771127 CCAAGAACCTCCCCTTGTCA 59.229 55.000 0.00 0.00 38.39 3.58
51 52 0.609406 GCCAAGAACCTCCCCTTGTC 60.609 60.000 0.00 0.00 38.39 3.18
52 53 1.360393 TGCCAAGAACCTCCCCTTGT 61.360 55.000 0.00 0.00 38.39 3.16
53 54 0.610232 CTGCCAAGAACCTCCCCTTG 60.610 60.000 0.00 0.00 39.43 3.61
54 55 1.770324 CTGCCAAGAACCTCCCCTT 59.230 57.895 0.00 0.00 0.00 3.95
55 56 2.911926 GCTGCCAAGAACCTCCCCT 61.912 63.158 0.00 0.00 0.00 4.79
56 57 2.361737 GCTGCCAAGAACCTCCCC 60.362 66.667 0.00 0.00 0.00 4.81
57 58 2.361737 GGCTGCCAAGAACCTCCC 60.362 66.667 15.17 0.00 0.00 4.30
58 59 2.361737 GGGCTGCCAAGAACCTCC 60.362 66.667 22.05 0.00 0.00 4.30
59 60 0.613012 ATTGGGCTGCCAAGAACCTC 60.613 55.000 22.05 0.25 32.97 3.85
60 61 0.901580 CATTGGGCTGCCAAGAACCT 60.902 55.000 22.05 0.00 32.97 3.50
61 62 1.593265 CATTGGGCTGCCAAGAACC 59.407 57.895 22.05 1.86 32.97 3.62
62 63 1.079612 GCATTGGGCTGCCAAGAAC 60.080 57.895 22.05 2.67 40.25 3.01
63 64 1.533513 TGCATTGGGCTGCCAAGAA 60.534 52.632 22.05 10.15 45.15 2.52
64 65 2.117858 TGCATTGGGCTGCCAAGA 59.882 55.556 22.05 5.64 45.15 3.02
65 66 2.263540 GTGCATTGGGCTGCCAAG 59.736 61.111 22.05 7.74 45.15 3.61
66 67 3.312718 GGTGCATTGGGCTGCCAA 61.313 61.111 22.05 6.26 45.15 4.52
67 68 3.831727 AAGGTGCATTGGGCTGCCA 62.832 57.895 22.05 0.00 45.15 4.92
68 69 2.115734 AAAAGGTGCATTGGGCTGCC 62.116 55.000 11.05 11.05 45.15 4.85
69 70 0.250424 AAAAAGGTGCATTGGGCTGC 60.250 50.000 0.00 0.00 45.15 5.25
70 71 2.612721 GGTAAAAAGGTGCATTGGGCTG 60.613 50.000 0.00 0.00 45.15 4.85
71 72 1.623311 GGTAAAAAGGTGCATTGGGCT 59.377 47.619 0.00 0.00 45.15 5.19
72 73 1.671556 CGGTAAAAAGGTGCATTGGGC 60.672 52.381 0.00 0.00 45.13 5.36
73 74 1.671556 GCGGTAAAAAGGTGCATTGGG 60.672 52.381 0.00 0.00 0.00 4.12
74 75 1.000283 TGCGGTAAAAAGGTGCATTGG 60.000 47.619 0.00 0.00 0.00 3.16
75 76 2.058057 GTGCGGTAAAAAGGTGCATTG 58.942 47.619 0.00 0.00 37.93 2.82
76 77 1.335506 CGTGCGGTAAAAAGGTGCATT 60.336 47.619 0.00 0.00 37.93 3.56
77 78 0.239879 CGTGCGGTAAAAAGGTGCAT 59.760 50.000 0.00 0.00 37.93 3.96
78 79 1.649815 CGTGCGGTAAAAAGGTGCA 59.350 52.632 0.00 0.00 0.00 4.57
79 80 1.728074 GCGTGCGGTAAAAAGGTGC 60.728 57.895 0.00 0.00 0.00 5.01
80 81 1.081708 GGCGTGCGGTAAAAAGGTG 60.082 57.895 0.00 0.00 0.00 4.00
81 82 2.609759 CGGCGTGCGGTAAAAAGGT 61.610 57.895 0.00 0.00 0.00 3.50
82 83 2.174835 CGGCGTGCGGTAAAAAGG 59.825 61.111 0.00 0.00 0.00 3.11
83 84 1.439693 CACGGCGTGCGGTAAAAAG 60.440 57.895 28.30 0.00 0.00 2.27
84 85 2.632541 CACGGCGTGCGGTAAAAA 59.367 55.556 28.30 0.00 0.00 1.94
85 86 3.347405 CCACGGCGTGCGGTAAAA 61.347 61.111 33.15 0.00 31.34 1.52
86 87 4.296593 TCCACGGCGTGCGGTAAA 62.297 61.111 33.15 11.33 31.34 2.01
94 95 3.346631 GATACCACGTCCACGGCGT 62.347 63.158 6.77 6.77 44.95 5.68
95 96 2.581409 GATACCACGTCCACGGCG 60.581 66.667 4.80 4.80 44.95 6.46
96 97 2.202837 GGATACCACGTCCACGGC 60.203 66.667 3.81 0.00 44.95 5.68
97 98 1.035932 AGAGGATACCACGTCCACGG 61.036 60.000 3.81 0.00 40.42 4.94
98 99 0.100682 CAGAGGATACCACGTCCACG 59.899 60.000 0.00 0.00 38.25 4.94
99 100 1.471119 TCAGAGGATACCACGTCCAC 58.529 55.000 0.00 0.00 38.25 4.02
100 101 2.100197 CTTCAGAGGATACCACGTCCA 58.900 52.381 0.00 0.00 38.25 4.02
101 102 1.202428 GCTTCAGAGGATACCACGTCC 60.202 57.143 0.00 0.00 35.94 4.79
102 103 1.751924 AGCTTCAGAGGATACCACGTC 59.248 52.381 0.00 0.00 37.17 4.34
103 104 1.751924 GAGCTTCAGAGGATACCACGT 59.248 52.381 0.00 0.00 37.17 4.49
104 105 1.751351 TGAGCTTCAGAGGATACCACG 59.249 52.381 0.00 0.00 37.17 4.94
105 106 3.791245 CTTGAGCTTCAGAGGATACCAC 58.209 50.000 0.00 0.00 37.17 4.16
106 107 2.169352 GCTTGAGCTTCAGAGGATACCA 59.831 50.000 0.00 0.00 38.21 3.25
107 108 2.801342 CGCTTGAGCTTCAGAGGATACC 60.801 54.545 1.07 0.00 39.32 2.73
108 109 2.099921 TCGCTTGAGCTTCAGAGGATAC 59.900 50.000 1.07 0.00 39.32 2.24
109 110 2.379005 TCGCTTGAGCTTCAGAGGATA 58.621 47.619 1.07 0.00 39.32 2.59
110 111 1.189752 TCGCTTGAGCTTCAGAGGAT 58.810 50.000 1.07 0.00 39.32 3.24
111 112 1.134877 CATCGCTTGAGCTTCAGAGGA 60.135 52.381 1.07 0.00 39.32 3.71
112 113 1.134877 TCATCGCTTGAGCTTCAGAGG 60.135 52.381 1.07 0.00 39.32 3.69
113 114 2.195096 CTCATCGCTTGAGCTTCAGAG 58.805 52.381 1.07 0.38 45.16 3.35
114 115 2.290531 CTCATCGCTTGAGCTTCAGA 57.709 50.000 1.07 0.00 45.16 3.27
122 123 0.465705 GTCCATCCCTCATCGCTTGA 59.534 55.000 0.00 0.00 0.00 3.02
123 124 0.467384 AGTCCATCCCTCATCGCTTG 59.533 55.000 0.00 0.00 0.00 4.01
124 125 1.134280 CAAGTCCATCCCTCATCGCTT 60.134 52.381 0.00 0.00 0.00 4.68
125 126 0.467384 CAAGTCCATCCCTCATCGCT 59.533 55.000 0.00 0.00 0.00 4.93
126 127 0.179000 ACAAGTCCATCCCTCATCGC 59.821 55.000 0.00 0.00 0.00 4.58
127 128 4.342862 AATACAAGTCCATCCCTCATCG 57.657 45.455 0.00 0.00 0.00 3.84
128 129 5.221722 TGCTAATACAAGTCCATCCCTCATC 60.222 44.000 0.00 0.00 0.00 2.92
129 130 4.660303 TGCTAATACAAGTCCATCCCTCAT 59.340 41.667 0.00 0.00 0.00 2.90
130 131 4.037222 TGCTAATACAAGTCCATCCCTCA 58.963 43.478 0.00 0.00 0.00 3.86
131 132 4.689612 TGCTAATACAAGTCCATCCCTC 57.310 45.455 0.00 0.00 0.00 4.30
132 133 5.450818 TTTGCTAATACAAGTCCATCCCT 57.549 39.130 0.00 0.00 0.00 4.20
133 134 6.239036 GGAATTTGCTAATACAAGTCCATCCC 60.239 42.308 4.34 0.00 36.38 3.85
134 135 6.547510 AGGAATTTGCTAATACAAGTCCATCC 59.452 38.462 10.02 3.75 37.73 3.51
135 136 7.573968 AGGAATTTGCTAATACAAGTCCATC 57.426 36.000 10.02 0.00 37.73 3.51
136 137 7.147846 CCAAGGAATTTGCTAATACAAGTCCAT 60.148 37.037 10.02 0.00 37.73 3.41
137 138 6.152661 CCAAGGAATTTGCTAATACAAGTCCA 59.847 38.462 10.02 0.00 37.73 4.02
138 139 6.405842 CCCAAGGAATTTGCTAATACAAGTCC 60.406 42.308 0.00 0.00 36.51 3.85
139 140 6.564328 CCCAAGGAATTTGCTAATACAAGTC 58.436 40.000 0.00 0.00 35.37 3.01
140 141 5.105351 GCCCAAGGAATTTGCTAATACAAGT 60.105 40.000 0.00 0.00 35.37 3.16
141 142 5.127682 AGCCCAAGGAATTTGCTAATACAAG 59.872 40.000 0.00 0.00 35.37 3.16
142 143 5.022787 AGCCCAAGGAATTTGCTAATACAA 58.977 37.500 0.00 0.00 35.37 2.41
143 144 4.609301 AGCCCAAGGAATTTGCTAATACA 58.391 39.130 0.00 0.00 35.37 2.29
144 145 5.598416 AAGCCCAAGGAATTTGCTAATAC 57.402 39.130 0.00 0.00 35.37 1.89
145 146 5.128663 GGAAAGCCCAAGGAATTTGCTAATA 59.871 40.000 0.00 0.00 35.37 0.98
146 147 4.080919 GGAAAGCCCAAGGAATTTGCTAAT 60.081 41.667 0.00 0.00 35.37 1.73
147 148 3.260632 GGAAAGCCCAAGGAATTTGCTAA 59.739 43.478 0.00 0.00 35.37 3.09
148 149 2.831526 GGAAAGCCCAAGGAATTTGCTA 59.168 45.455 0.00 0.00 35.37 3.49
149 150 1.625315 GGAAAGCCCAAGGAATTTGCT 59.375 47.619 0.00 0.00 35.37 3.91
150 151 1.625315 AGGAAAGCCCAAGGAATTTGC 59.375 47.619 0.00 0.00 37.41 3.68
151 152 4.344104 TCTAGGAAAGCCCAAGGAATTTG 58.656 43.478 0.00 0.00 37.41 2.32
152 153 4.044698 ACTCTAGGAAAGCCCAAGGAATTT 59.955 41.667 0.00 0.00 37.41 1.82
153 154 3.593780 ACTCTAGGAAAGCCCAAGGAATT 59.406 43.478 0.00 0.00 37.41 2.17
154 155 3.193782 ACTCTAGGAAAGCCCAAGGAAT 58.806 45.455 0.00 0.00 37.41 3.01
155 156 2.632537 ACTCTAGGAAAGCCCAAGGAA 58.367 47.619 0.00 0.00 37.41 3.36
156 157 2.305927 CAACTCTAGGAAAGCCCAAGGA 59.694 50.000 0.00 0.00 37.41 3.36
157 158 2.305927 TCAACTCTAGGAAAGCCCAAGG 59.694 50.000 0.00 0.00 37.41 3.61
158 159 3.703001 TCAACTCTAGGAAAGCCCAAG 57.297 47.619 0.00 0.00 37.41 3.61
159 160 4.141251 AGTTTCAACTCTAGGAAAGCCCAA 60.141 41.667 0.00 0.00 32.86 4.12
160 161 3.394606 AGTTTCAACTCTAGGAAAGCCCA 59.605 43.478 0.00 0.00 32.86 5.36
161 162 3.753797 CAGTTTCAACTCTAGGAAAGCCC 59.246 47.826 0.00 0.00 37.08 5.19
162 163 4.642429 TCAGTTTCAACTCTAGGAAAGCC 58.358 43.478 0.00 0.00 37.08 4.35
163 164 6.428159 TGATTCAGTTTCAACTCTAGGAAAGC 59.572 38.462 0.00 0.00 37.08 3.51
164 165 7.875041 TCTGATTCAGTTTCAACTCTAGGAAAG 59.125 37.037 13.23 0.00 37.08 2.62
165 166 7.657761 GTCTGATTCAGTTTCAACTCTAGGAAA 59.342 37.037 13.23 0.00 37.08 3.13
166 167 7.015682 AGTCTGATTCAGTTTCAACTCTAGGAA 59.984 37.037 13.23 0.00 37.08 3.36
167 168 6.495181 AGTCTGATTCAGTTTCAACTCTAGGA 59.505 38.462 13.23 0.00 37.08 2.94
168 169 6.696411 AGTCTGATTCAGTTTCAACTCTAGG 58.304 40.000 13.23 0.00 37.08 3.02
169 170 7.601856 AGAGTCTGATTCAGTTTCAACTCTAG 58.398 38.462 23.34 0.00 38.42 2.43
170 171 7.531857 AGAGTCTGATTCAGTTTCAACTCTA 57.468 36.000 23.34 0.00 38.42 2.43
171 172 6.418057 AGAGTCTGATTCAGTTTCAACTCT 57.582 37.500 20.86 20.86 37.08 3.24
172 173 7.148641 TGTAGAGTCTGATTCAGTTTCAACTC 58.851 38.462 18.12 18.12 37.08 3.01
173 174 7.055667 TGTAGAGTCTGATTCAGTTTCAACT 57.944 36.000 13.23 8.82 40.60 3.16
174 175 7.567771 CGTTGTAGAGTCTGATTCAGTTTCAAC 60.568 40.741 13.23 16.32 32.61 3.18
175 176 6.420903 CGTTGTAGAGTCTGATTCAGTTTCAA 59.579 38.462 13.23 8.69 32.61 2.69
176 177 5.920840 CGTTGTAGAGTCTGATTCAGTTTCA 59.079 40.000 13.23 3.87 32.61 2.69
177 178 5.346281 CCGTTGTAGAGTCTGATTCAGTTTC 59.654 44.000 13.23 11.51 32.61 2.78
178 179 5.221461 ACCGTTGTAGAGTCTGATTCAGTTT 60.221 40.000 13.23 3.32 32.61 2.66
179 180 4.281182 ACCGTTGTAGAGTCTGATTCAGTT 59.719 41.667 13.23 3.66 32.61 3.16
180 181 3.827302 ACCGTTGTAGAGTCTGATTCAGT 59.173 43.478 13.23 0.00 32.61 3.41
181 182 4.082733 TCACCGTTGTAGAGTCTGATTCAG 60.083 45.833 7.38 7.38 0.00 3.02
182 183 3.824443 TCACCGTTGTAGAGTCTGATTCA 59.176 43.478 1.86 0.00 0.00 2.57
183 184 4.436242 TCACCGTTGTAGAGTCTGATTC 57.564 45.455 1.86 0.00 0.00 2.52
184 185 5.886474 TCTATCACCGTTGTAGAGTCTGATT 59.114 40.000 1.86 0.00 0.00 2.57
185 186 5.437946 TCTATCACCGTTGTAGAGTCTGAT 58.562 41.667 1.86 0.00 0.00 2.90
186 187 4.840271 TCTATCACCGTTGTAGAGTCTGA 58.160 43.478 1.86 0.00 0.00 3.27
187 188 5.106277 TGTTCTATCACCGTTGTAGAGTCTG 60.106 44.000 1.86 0.00 0.00 3.51
188 189 5.008331 TGTTCTATCACCGTTGTAGAGTCT 58.992 41.667 0.00 0.00 0.00 3.24
189 190 5.306532 TGTTCTATCACCGTTGTAGAGTC 57.693 43.478 0.00 0.00 0.00 3.36
190 191 5.717078 TTGTTCTATCACCGTTGTAGAGT 57.283 39.130 0.00 0.00 0.00 3.24
191 192 5.005779 GCATTGTTCTATCACCGTTGTAGAG 59.994 44.000 0.00 0.00 0.00 2.43
192 193 4.868171 GCATTGTTCTATCACCGTTGTAGA 59.132 41.667 0.00 0.00 0.00 2.59
193 194 4.870426 AGCATTGTTCTATCACCGTTGTAG 59.130 41.667 0.00 0.00 0.00 2.74
194 195 4.827692 AGCATTGTTCTATCACCGTTGTA 58.172 39.130 0.00 0.00 0.00 2.41
195 196 3.674997 AGCATTGTTCTATCACCGTTGT 58.325 40.909 0.00 0.00 0.00 3.32
196 197 3.684305 TGAGCATTGTTCTATCACCGTTG 59.316 43.478 2.11 0.00 0.00 4.10
197 198 3.935203 CTGAGCATTGTTCTATCACCGTT 59.065 43.478 2.11 0.00 0.00 4.44
198 199 3.525537 CTGAGCATTGTTCTATCACCGT 58.474 45.455 2.11 0.00 0.00 4.83
199 200 2.868583 CCTGAGCATTGTTCTATCACCG 59.131 50.000 2.11 0.00 0.00 4.94
200 201 2.615912 GCCTGAGCATTGTTCTATCACC 59.384 50.000 2.11 0.00 39.53 4.02
201 202 2.615912 GGCCTGAGCATTGTTCTATCAC 59.384 50.000 0.00 0.00 42.56 3.06
202 203 2.239402 TGGCCTGAGCATTGTTCTATCA 59.761 45.455 3.32 0.00 42.56 2.15
203 204 2.923121 TGGCCTGAGCATTGTTCTATC 58.077 47.619 3.32 0.00 42.56 2.08
204 205 3.370840 TTGGCCTGAGCATTGTTCTAT 57.629 42.857 3.32 0.00 42.56 1.98
205 206 2.877097 TTGGCCTGAGCATTGTTCTA 57.123 45.000 3.32 0.00 42.56 2.10
206 207 1.999648 TTTGGCCTGAGCATTGTTCT 58.000 45.000 3.32 0.00 42.56 3.01
207 208 2.224018 TGTTTTGGCCTGAGCATTGTTC 60.224 45.455 3.32 0.00 42.56 3.18
208 209 1.761784 TGTTTTGGCCTGAGCATTGTT 59.238 42.857 3.32 0.00 42.56 2.83
209 210 1.342174 CTGTTTTGGCCTGAGCATTGT 59.658 47.619 3.32 0.00 42.56 2.71
210 211 1.614903 TCTGTTTTGGCCTGAGCATTG 59.385 47.619 3.32 0.00 42.56 2.82
211 212 1.999648 TCTGTTTTGGCCTGAGCATT 58.000 45.000 3.32 0.00 42.56 3.56
212 213 1.822990 CATCTGTTTTGGCCTGAGCAT 59.177 47.619 3.32 0.00 42.56 3.79
213 214 1.250328 CATCTGTTTTGGCCTGAGCA 58.750 50.000 3.32 0.00 42.56 4.26
214 215 0.529378 CCATCTGTTTTGGCCTGAGC 59.471 55.000 3.32 0.00 38.76 4.26
215 216 1.542915 CACCATCTGTTTTGGCCTGAG 59.457 52.381 3.32 0.00 37.81 3.35
216 217 1.619654 CACCATCTGTTTTGGCCTGA 58.380 50.000 3.32 0.00 37.81 3.86
217 218 0.604578 CCACCATCTGTTTTGGCCTG 59.395 55.000 3.32 0.00 37.81 4.85
218 219 0.482446 TCCACCATCTGTTTTGGCCT 59.518 50.000 3.32 0.00 37.81 5.19
219 220 1.000843 GTTCCACCATCTGTTTTGGCC 59.999 52.381 0.00 0.00 37.81 5.36
220 221 1.686052 TGTTCCACCATCTGTTTTGGC 59.314 47.619 0.00 0.00 37.81 4.52
221 222 4.399004 TTTGTTCCACCATCTGTTTTGG 57.601 40.909 0.00 0.00 40.26 3.28
222 223 5.418676 ACTTTTGTTCCACCATCTGTTTTG 58.581 37.500 0.00 0.00 0.00 2.44
223 224 5.675684 ACTTTTGTTCCACCATCTGTTTT 57.324 34.783 0.00 0.00 0.00 2.43
224 225 6.783708 TTACTTTTGTTCCACCATCTGTTT 57.216 33.333 0.00 0.00 0.00 2.83
225 226 6.379988 AGTTTACTTTTGTTCCACCATCTGTT 59.620 34.615 0.00 0.00 0.00 3.16
226 227 5.891551 AGTTTACTTTTGTTCCACCATCTGT 59.108 36.000 0.00 0.00 0.00 3.41
227 228 6.039270 TGAGTTTACTTTTGTTCCACCATCTG 59.961 38.462 0.00 0.00 0.00 2.90
228 229 6.126409 TGAGTTTACTTTTGTTCCACCATCT 58.874 36.000 0.00 0.00 0.00 2.90
229 230 6.385649 TGAGTTTACTTTTGTTCCACCATC 57.614 37.500 0.00 0.00 0.00 3.51
230 231 6.783708 TTGAGTTTACTTTTGTTCCACCAT 57.216 33.333 0.00 0.00 0.00 3.55
231 232 6.591750 TTTGAGTTTACTTTTGTTCCACCA 57.408 33.333 0.00 0.00 0.00 4.17
232 233 6.035650 GCTTTTGAGTTTACTTTTGTTCCACC 59.964 38.462 0.00 0.00 0.00 4.61
233 234 6.237463 CGCTTTTGAGTTTACTTTTGTTCCAC 60.237 38.462 0.00 0.00 0.00 4.02
234 235 5.802956 CGCTTTTGAGTTTACTTTTGTTCCA 59.197 36.000 0.00 0.00 0.00 3.53
235 236 5.803461 ACGCTTTTGAGTTTACTTTTGTTCC 59.197 36.000 0.00 0.00 0.00 3.62
236 237 6.864560 ACGCTTTTGAGTTTACTTTTGTTC 57.135 33.333 0.00 0.00 0.00 3.18
237 238 8.745464 TTTACGCTTTTGAGTTTACTTTTGTT 57.255 26.923 0.00 0.00 33.62 2.83
238 239 8.745464 TTTTACGCTTTTGAGTTTACTTTTGT 57.255 26.923 0.00 0.00 33.62 2.83
378 379 1.078214 CCAGCTTGGCCTTCATCGA 60.078 57.895 3.32 0.00 0.00 3.59
398 401 3.853330 CGTGCACCAAGGCGATCG 61.853 66.667 11.69 11.69 36.28 3.69
443 446 2.927871 GCTGATGTTTTGGACCATGCAC 60.928 50.000 0.00 0.00 0.00 4.57
444 447 1.273048 GCTGATGTTTTGGACCATGCA 59.727 47.619 0.00 0.00 0.00 3.96
445 448 1.547372 AGCTGATGTTTTGGACCATGC 59.453 47.619 0.00 0.00 0.00 4.06
483 486 1.464997 GTGGTCTTGTTTGATCCGAGC 59.535 52.381 0.00 0.00 0.00 5.03
485 488 1.697432 AGGTGGTCTTGTTTGATCCGA 59.303 47.619 0.00 0.00 0.00 4.55
487 490 2.076863 CGAGGTGGTCTTGTTTGATCC 58.923 52.381 0.00 0.00 0.00 3.36
488 491 1.464997 GCGAGGTGGTCTTGTTTGATC 59.535 52.381 0.00 0.00 0.00 2.92
489 492 1.202758 TGCGAGGTGGTCTTGTTTGAT 60.203 47.619 0.00 0.00 0.00 2.57
490 493 0.179234 TGCGAGGTGGTCTTGTTTGA 59.821 50.000 0.00 0.00 0.00 2.69
491 494 1.021202 TTGCGAGGTGGTCTTGTTTG 58.979 50.000 0.00 0.00 0.00 2.93
492 495 1.676006 CTTTGCGAGGTGGTCTTGTTT 59.324 47.619 0.00 0.00 0.00 2.83
493 496 1.134220 TCTTTGCGAGGTGGTCTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
494 497 0.468226 TCTTTGCGAGGTGGTCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
495 498 1.593196 TTCTTTGCGAGGTGGTCTTG 58.407 50.000 0.00 0.00 0.00 3.02
496 499 2.341846 TTTCTTTGCGAGGTGGTCTT 57.658 45.000 0.00 0.00 0.00 3.01
497 500 2.341846 TTTTCTTTGCGAGGTGGTCT 57.658 45.000 0.00 0.00 0.00 3.85
514 517 6.279513 TGTGTGGTCTTGTTTGATCTTTTT 57.720 33.333 0.00 0.00 0.00 1.94
515 518 5.913137 TGTGTGGTCTTGTTTGATCTTTT 57.087 34.783 0.00 0.00 0.00 2.27
516 519 6.772716 AGTATGTGTGGTCTTGTTTGATCTTT 59.227 34.615 0.00 0.00 0.00 2.52
517 520 6.205464 CAGTATGTGTGGTCTTGTTTGATCTT 59.795 38.462 0.00 0.00 0.00 2.40
518 521 5.702670 CAGTATGTGTGGTCTTGTTTGATCT 59.297 40.000 0.00 0.00 0.00 2.75
527 530 5.301551 TGAATTTTGCAGTATGTGTGGTCTT 59.698 36.000 0.00 0.00 39.31 3.01
638 642 6.718388 TCGAGCTGAATTTTGCAGTATAATG 58.282 36.000 0.00 0.00 35.81 1.90
671 675 5.448632 GCCTCACGTTCTCAGAAAAGAAAAA 60.449 40.000 0.00 0.00 37.04 1.94
678 682 2.872245 CAAAGCCTCACGTTCTCAGAAA 59.128 45.455 0.00 0.00 0.00 2.52
681 685 0.514691 GCAAAGCCTCACGTTCTCAG 59.485 55.000 0.00 0.00 0.00 3.35
732 736 0.179020 TTGTCCTCACAGCCCACAAG 60.179 55.000 0.00 0.00 32.71 3.16
922 931 2.812619 GGAGCTGGGGATTCGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
927 936 1.153147 GGTTCGGAGCTGGGGATTC 60.153 63.158 0.00 0.00 0.00 2.52
958 968 3.448686 GTTGATCGATCGGAGATGTTGT 58.551 45.455 20.03 0.00 45.12 3.32
1125 1153 0.188587 AGATGATGCTCTCCCCGGTA 59.811 55.000 0.00 0.00 0.00 4.02
1496 1579 1.738099 CATATGTAGCGAGGCGGGC 60.738 63.158 0.00 0.00 0.00 6.13
1772 1885 1.457346 CACATCTTGTGCTTCCTCCC 58.543 55.000 0.00 0.00 41.89 4.30
2232 2386 5.653769 ACCTGAATTAACAGACCATCCATTG 59.346 40.000 0.00 0.00 39.94 2.82
2364 2530 4.855715 ACCATCTACGGAGTACATCATG 57.144 45.455 0.00 0.00 45.11 3.07
2384 2550 5.411361 GGTTCATAAAATGCCTTCCCAAAAC 59.589 40.000 0.00 0.00 0.00 2.43
2409 2575 9.253832 TCTTGCAAATTCTTTCCCATAAATCTA 57.746 29.630 0.00 0.00 0.00 1.98
2410 2576 8.037166 GTCTTGCAAATTCTTTCCCATAAATCT 58.963 33.333 0.00 0.00 0.00 2.40
2431 2597 2.230660 GGAGACCCCTGTTTTGTCTTG 58.769 52.381 0.00 0.00 39.36 3.02
2521 2687 8.466617 TGTAAAGAAAAAGTATACCCAAGCAA 57.533 30.769 0.00 0.00 0.00 3.91
2576 2744 8.635765 ATGTATTATGAAACAACAACCAGAGT 57.364 30.769 0.00 0.00 0.00 3.24
2601 2769 8.559536 CAAAGTAGATGCAAAACTTGTCTCTAA 58.440 33.333 11.16 0.00 33.85 2.10
2623 2791 7.914346 GCAGAGATCATCAAATTCTTACCAAAG 59.086 37.037 0.00 0.00 0.00 2.77
2652 2822 4.666412 TTTTCCAGGATGATGGTAACCA 57.334 40.909 0.00 0.00 41.43 3.67
2660 2830 4.387211 CCCAGGAGAATTTTCCAGGATGAT 60.387 45.833 23.58 0.00 44.45 2.45
2663 2833 2.245806 CCCCAGGAGAATTTTCCAGGAT 59.754 50.000 23.58 0.00 44.45 3.24
2685 2855 9.448438 GATTGTGGTATATGGTAATGAATAGCA 57.552 33.333 0.00 0.00 45.44 3.49
2700 2870 2.502130 TGGAACCTGCGATTGTGGTATA 59.498 45.455 0.00 0.00 33.17 1.47
2736 2907 6.173339 CCAGCAGTTTTATCTAGTGGAGAAA 58.827 40.000 0.00 0.00 37.85 2.52
2784 2957 1.599171 CCACTGCGCAAAACAATCGAA 60.599 47.619 13.05 0.00 0.00 3.71
2791 2964 0.310543 TGATGACCACTGCGCAAAAC 59.689 50.000 13.05 2.09 0.00 2.43
2816 2989 5.105756 CCCCACTTCACCATAAAAGATTCAC 60.106 44.000 0.00 0.00 0.00 3.18
2822 2995 6.658188 TTAAACCCCACTTCACCATAAAAG 57.342 37.500 0.00 0.00 0.00 2.27
2844 3017 5.544650 CCATCCAGAAGCTTCAAACATTTT 58.455 37.500 27.57 1.82 0.00 1.82
2845 3018 4.562143 GCCATCCAGAAGCTTCAAACATTT 60.562 41.667 27.57 2.61 0.00 2.32
2846 3019 3.056322 GCCATCCAGAAGCTTCAAACATT 60.056 43.478 27.57 3.39 0.00 2.71
2847 3020 2.494870 GCCATCCAGAAGCTTCAAACAT 59.505 45.455 27.57 11.14 0.00 2.71
2848 3021 1.888512 GCCATCCAGAAGCTTCAAACA 59.111 47.619 27.57 9.31 0.00 2.83
2849 3022 2.165998 AGCCATCCAGAAGCTTCAAAC 58.834 47.619 27.57 9.83 31.27 2.93
2850 3023 2.592102 AGCCATCCAGAAGCTTCAAA 57.408 45.000 27.57 12.90 31.27 2.69
2851 3024 2.592102 AAGCCATCCAGAAGCTTCAA 57.408 45.000 27.57 13.25 43.12 2.69
2886 3068 3.060602 GAGTAGTGAACCAGTCTTGCAC 58.939 50.000 0.00 0.00 0.00 4.57
2893 3075 5.934402 ATATTTCCGAGTAGTGAACCAGT 57.066 39.130 0.00 0.00 0.00 4.00
2897 3079 6.043411 AGCTGAATATTTCCGAGTAGTGAAC 58.957 40.000 0.00 0.00 0.00 3.18
2906 3088 4.112634 CTCAACGAGCTGAATATTTCCGA 58.887 43.478 0.00 0.00 0.00 4.55
2907 3089 4.112634 TCTCAACGAGCTGAATATTTCCG 58.887 43.478 0.00 0.00 0.00 4.30
2932 3114 4.320608 TTGGTTTTTCCATCTCAAGTGC 57.679 40.909 0.00 0.00 46.60 4.40
2942 3124 6.099557 ACCTGAAGATCATTTTGGTTTTTCCA 59.900 34.615 0.00 0.00 45.60 3.53
3028 3215 6.039717 TGAAGAAAAAGAACCATCCTGAACAG 59.960 38.462 0.00 0.00 0.00 3.16
3082 3270 1.135199 CCATTGTCATGTCCTTGCTGC 60.135 52.381 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.