Multiple sequence alignment - TraesCS7A01G451900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G451900 chr7A 100.000 2414 0 0 1 2414 644740509 644738096 0 4458
1 TraesCS7A01G451900 chr7A 96.009 426 13 2 1 425 644763617 644763195 0 689
2 TraesCS7A01G451900 chr3D 95.911 1932 75 4 427 2356 252333031 252331102 0 3127
3 TraesCS7A01G451900 chr5D 95.589 1927 74 5 426 2350 320661624 320663541 0 3077
4 TraesCS7A01G451900 chr5D 94.990 1936 90 6 426 2356 530734219 530736152 0 3031
5 TraesCS7A01G451900 chr5D 95.034 1933 83 6 426 2356 363006486 363008407 0 3025
6 TraesCS7A01G451900 chr5D 94.576 1936 99 5 426 2356 134488735 134486801 0 2988
7 TraesCS7A01G451900 chr2D 95.088 1934 79 6 426 2356 114667326 114665406 0 3031
8 TraesCS7A01G451900 chr7D 94.835 1936 89 8 426 2356 550636908 550638837 0 3011
9 TraesCS7A01G451900 chr1D 94.685 1938 88 7 426 2359 447755386 447753460 0 2994
10 TraesCS7A01G451900 chr4A 94.293 1945 99 7 426 2364 574553695 574551757 0 2966
11 TraesCS7A01G451900 chr4A 96.714 426 13 1 1 425 550247466 550247041 0 708
12 TraesCS7A01G451900 chr2A 96.487 427 14 1 1 426 446712628 446713054 0 704
13 TraesCS7A01G451900 chr2A 95.775 426 17 1 1 425 577082701 577082276 0 686
14 TraesCS7A01G451900 chr2A 95.775 426 15 2 1 425 257906793 257907216 0 684
15 TraesCS7A01G451900 chr2A 95.550 427 17 2 1 425 577065707 577065281 0 682
16 TraesCS7A01G451900 chr1A 95.550 427 17 2 1 425 339945541 339945967 0 682
17 TraesCS7A01G451900 chr1A 95.540 426 15 2 1 425 386551304 386550882 0 678
18 TraesCS7A01G451900 chr6A 94.907 432 20 2 1 430 201891652 201891221 0 675


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G451900 chr7A 644738096 644740509 2413 True 4458 4458 100.000 1 2414 1 chr7A.!!$R1 2413
1 TraesCS7A01G451900 chr3D 252331102 252333031 1929 True 3127 3127 95.911 427 2356 1 chr3D.!!$R1 1929
2 TraesCS7A01G451900 chr5D 320661624 320663541 1917 False 3077 3077 95.589 426 2350 1 chr5D.!!$F1 1924
3 TraesCS7A01G451900 chr5D 530734219 530736152 1933 False 3031 3031 94.990 426 2356 1 chr5D.!!$F3 1930
4 TraesCS7A01G451900 chr5D 363006486 363008407 1921 False 3025 3025 95.034 426 2356 1 chr5D.!!$F2 1930
5 TraesCS7A01G451900 chr5D 134486801 134488735 1934 True 2988 2988 94.576 426 2356 1 chr5D.!!$R1 1930
6 TraesCS7A01G451900 chr2D 114665406 114667326 1920 True 3031 3031 95.088 426 2356 1 chr2D.!!$R1 1930
7 TraesCS7A01G451900 chr7D 550636908 550638837 1929 False 3011 3011 94.835 426 2356 1 chr7D.!!$F1 1930
8 TraesCS7A01G451900 chr1D 447753460 447755386 1926 True 2994 2994 94.685 426 2359 1 chr1D.!!$R1 1933
9 TraesCS7A01G451900 chr4A 574551757 574553695 1938 True 2966 2966 94.293 426 2364 1 chr4A.!!$R2 1938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.030908 GAGGGCGTGAGGAGAATACG 59.969 60.0 0.0 0.0 40.52 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 1992 0.324943 TGACAGCTCTAACCTTGGCC 59.675 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.356289 CCTTGTTTGTAAAGGTTTGGTCG 58.644 43.478 0.00 0.00 39.55 4.79
28 29 3.423996 TGTTTGTAAAGGTTTGGTCGC 57.576 42.857 0.00 0.00 0.00 5.19
29 30 2.099427 TGTTTGTAAAGGTTTGGTCGCC 59.901 45.455 0.00 0.00 0.00 5.54
30 31 0.945813 TTGTAAAGGTTTGGTCGCCG 59.054 50.000 0.00 0.00 0.00 6.46
31 32 1.208358 GTAAAGGTTTGGTCGCCGC 59.792 57.895 0.00 0.00 0.00 6.53
32 33 1.967494 TAAAGGTTTGGTCGCCGCC 60.967 57.895 0.00 0.00 0.00 6.13
33 34 2.400269 TAAAGGTTTGGTCGCCGCCT 62.400 55.000 0.00 0.00 0.00 5.52
34 35 4.699522 AGGTTTGGTCGCCGCCTC 62.700 66.667 0.00 0.00 0.00 4.70
37 38 4.257654 TTTGGTCGCCGCCTCCAA 62.258 61.111 9.10 9.10 39.12 3.53
38 39 4.697756 TTGGTCGCCGCCTCCAAG 62.698 66.667 9.10 0.00 36.48 3.61
68 69 1.560923 GTGGAATCACGACATCTCGG 58.439 55.000 0.00 0.00 44.80 4.63
69 70 1.134367 GTGGAATCACGACATCTCGGA 59.866 52.381 0.00 0.00 44.80 4.55
70 71 2.031870 TGGAATCACGACATCTCGGAT 58.968 47.619 0.00 0.00 44.80 4.18
71 72 2.430694 TGGAATCACGACATCTCGGATT 59.569 45.455 6.74 6.74 44.80 3.01
72 73 2.797156 GGAATCACGACATCTCGGATTG 59.203 50.000 10.24 0.00 44.80 2.67
73 74 3.448686 GAATCACGACATCTCGGATTGT 58.551 45.455 10.24 0.00 44.80 2.71
74 75 2.278026 TCACGACATCTCGGATTGTG 57.722 50.000 0.00 0.00 44.80 3.33
75 76 1.544246 TCACGACATCTCGGATTGTGT 59.456 47.619 0.00 0.00 44.80 3.72
76 77 1.655597 CACGACATCTCGGATTGTGTG 59.344 52.381 0.00 4.76 44.80 3.82
77 78 1.544246 ACGACATCTCGGATTGTGTGA 59.456 47.619 0.00 0.00 44.80 3.58
78 79 2.188524 CGACATCTCGGATTGTGTGAG 58.811 52.381 0.00 0.00 36.16 3.51
79 80 2.544685 GACATCTCGGATTGTGTGAGG 58.455 52.381 0.00 0.00 0.00 3.86
80 81 1.208052 ACATCTCGGATTGTGTGAGGG 59.792 52.381 0.00 0.00 0.00 4.30
81 82 0.179000 ATCTCGGATTGTGTGAGGGC 59.821 55.000 0.00 0.00 0.00 5.19
82 83 1.811266 CTCGGATTGTGTGAGGGCG 60.811 63.158 0.00 0.00 0.00 6.13
83 84 2.047274 CGGATTGTGTGAGGGCGT 60.047 61.111 0.00 0.00 0.00 5.68
84 85 2.390599 CGGATTGTGTGAGGGCGTG 61.391 63.158 0.00 0.00 0.00 5.34
85 86 1.003839 GGATTGTGTGAGGGCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
86 87 1.021390 GGATTGTGTGAGGGCGTGAG 61.021 60.000 0.00 0.00 0.00 3.51
87 88 1.003355 ATTGTGTGAGGGCGTGAGG 60.003 57.895 0.00 0.00 0.00 3.86
88 89 1.480212 ATTGTGTGAGGGCGTGAGGA 61.480 55.000 0.00 0.00 0.00 3.71
89 90 2.099652 TTGTGTGAGGGCGTGAGGAG 62.100 60.000 0.00 0.00 0.00 3.69
90 91 2.117423 TGTGAGGGCGTGAGGAGA 59.883 61.111 0.00 0.00 0.00 3.71
91 92 1.533033 TGTGAGGGCGTGAGGAGAA 60.533 57.895 0.00 0.00 0.00 2.87
92 93 0.904865 TGTGAGGGCGTGAGGAGAAT 60.905 55.000 0.00 0.00 0.00 2.40
93 94 1.112113 GTGAGGGCGTGAGGAGAATA 58.888 55.000 0.00 0.00 0.00 1.75
94 95 1.112113 TGAGGGCGTGAGGAGAATAC 58.888 55.000 0.00 0.00 0.00 1.89
95 96 0.030908 GAGGGCGTGAGGAGAATACG 59.969 60.000 0.00 0.00 40.52 3.06
96 97 1.067582 GGGCGTGAGGAGAATACGG 59.932 63.158 0.00 0.00 38.20 4.02
97 98 1.673808 GGGCGTGAGGAGAATACGGT 61.674 60.000 0.00 0.00 38.20 4.83
98 99 0.527817 GGCGTGAGGAGAATACGGTG 60.528 60.000 0.00 0.00 38.20 4.94
99 100 0.527817 GCGTGAGGAGAATACGGTGG 60.528 60.000 0.00 0.00 38.20 4.61
100 101 0.527817 CGTGAGGAGAATACGGTGGC 60.528 60.000 0.00 0.00 34.43 5.01
101 102 0.179081 GTGAGGAGAATACGGTGGCC 60.179 60.000 0.00 0.00 0.00 5.36
102 103 1.335132 TGAGGAGAATACGGTGGCCC 61.335 60.000 0.00 0.00 0.00 5.80
103 104 1.003051 AGGAGAATACGGTGGCCCT 59.997 57.895 0.00 0.00 0.00 5.19
104 105 0.263765 AGGAGAATACGGTGGCCCTA 59.736 55.000 0.00 0.00 0.00 3.53
105 106 0.680061 GGAGAATACGGTGGCCCTAG 59.320 60.000 0.00 0.00 0.00 3.02
106 107 1.411041 GAGAATACGGTGGCCCTAGT 58.589 55.000 0.00 0.00 0.00 2.57
107 108 1.068741 GAGAATACGGTGGCCCTAGTG 59.931 57.143 0.00 0.00 0.00 2.74
108 109 0.106149 GAATACGGTGGCCCTAGTGG 59.894 60.000 0.00 0.00 37.09 4.00
118 119 1.533711 CCCTAGTGGCATCTTGGGG 59.466 63.158 20.46 13.40 43.38 4.96
119 120 0.988145 CCCTAGTGGCATCTTGGGGA 60.988 60.000 20.46 0.00 43.38 4.81
120 121 0.471617 CCTAGTGGCATCTTGGGGAG 59.528 60.000 0.00 0.00 0.00 4.30
121 122 0.179034 CTAGTGGCATCTTGGGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
122 123 0.913934 TAGTGGCATCTTGGGGAGCA 60.914 55.000 0.00 0.00 0.00 4.26
123 124 1.076485 GTGGCATCTTGGGGAGCAT 60.076 57.895 0.00 0.00 0.00 3.79
124 125 0.685458 GTGGCATCTTGGGGAGCATT 60.685 55.000 0.00 0.00 0.00 3.56
125 126 0.685131 TGGCATCTTGGGGAGCATTG 60.685 55.000 0.00 0.00 0.00 2.82
126 127 0.685458 GGCATCTTGGGGAGCATTGT 60.685 55.000 0.00 0.00 0.00 2.71
127 128 0.458669 GCATCTTGGGGAGCATTGTG 59.541 55.000 0.00 0.00 0.00 3.33
128 129 0.458669 CATCTTGGGGAGCATTGTGC 59.541 55.000 0.00 0.00 45.46 4.57
129 130 0.685458 ATCTTGGGGAGCATTGTGCC 60.685 55.000 0.00 0.00 46.52 5.01
130 131 1.304713 CTTGGGGAGCATTGTGCCT 60.305 57.895 0.00 0.00 46.52 4.75
131 132 1.304381 TTGGGGAGCATTGTGCCTC 60.304 57.895 0.00 0.00 46.52 4.70
132 133 2.440980 GGGGAGCATTGTGCCTCC 60.441 66.667 10.16 10.16 46.52 4.30
133 134 2.356278 GGGAGCATTGTGCCTCCA 59.644 61.111 16.56 0.00 46.52 3.86
134 135 2.048603 GGGAGCATTGTGCCTCCAC 61.049 63.158 16.56 0.00 46.52 4.02
141 142 4.314440 TGTGCCTCCACACCGCTC 62.314 66.667 0.00 0.00 46.51 5.03
144 145 4.329545 GCCTCCACACCGCTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
145 146 2.358737 CCTCCACACCGCTCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
146 147 2.738521 CTCCACACCGCTCCAACG 60.739 66.667 0.00 0.00 0.00 4.10
160 161 1.829222 TCCAACGGAGACATACTTCCC 59.171 52.381 0.00 0.00 0.00 3.97
161 162 1.831736 CCAACGGAGACATACTTCCCT 59.168 52.381 0.00 0.00 0.00 4.20
162 163 2.236395 CCAACGGAGACATACTTCCCTT 59.764 50.000 0.00 0.00 0.00 3.95
163 164 3.522553 CAACGGAGACATACTTCCCTTC 58.477 50.000 0.00 0.00 0.00 3.46
164 165 2.816411 ACGGAGACATACTTCCCTTCA 58.184 47.619 0.00 0.00 0.00 3.02
165 166 3.170717 ACGGAGACATACTTCCCTTCAA 58.829 45.455 0.00 0.00 0.00 2.69
166 167 3.581332 ACGGAGACATACTTCCCTTCAAA 59.419 43.478 0.00 0.00 0.00 2.69
167 168 4.184629 CGGAGACATACTTCCCTTCAAAG 58.815 47.826 0.00 0.00 0.00 2.77
168 169 4.518249 GGAGACATACTTCCCTTCAAAGG 58.482 47.826 1.54 1.54 46.06 3.11
191 192 3.329929 AGGAACTTCGGTAACACATCC 57.670 47.619 0.00 0.00 27.25 3.51
192 193 2.904434 AGGAACTTCGGTAACACATCCT 59.096 45.455 0.00 0.00 27.25 3.24
193 194 3.056035 AGGAACTTCGGTAACACATCCTC 60.056 47.826 0.00 0.00 27.25 3.71
194 195 2.649331 ACTTCGGTAACACATCCTCG 57.351 50.000 0.00 0.00 0.00 4.63
195 196 1.891150 ACTTCGGTAACACATCCTCGT 59.109 47.619 0.00 0.00 0.00 4.18
196 197 2.094854 ACTTCGGTAACACATCCTCGTC 60.095 50.000 0.00 0.00 0.00 4.20
197 198 1.830279 TCGGTAACACATCCTCGTCT 58.170 50.000 0.00 0.00 0.00 4.18
198 199 1.741706 TCGGTAACACATCCTCGTCTC 59.258 52.381 0.00 0.00 0.00 3.36
199 200 1.202268 CGGTAACACATCCTCGTCTCC 60.202 57.143 0.00 0.00 0.00 3.71
200 201 1.822990 GGTAACACATCCTCGTCTCCA 59.177 52.381 0.00 0.00 0.00 3.86
201 202 2.416972 GGTAACACATCCTCGTCTCCAC 60.417 54.545 0.00 0.00 0.00 4.02
202 203 0.608640 AACACATCCTCGTCTCCACC 59.391 55.000 0.00 0.00 0.00 4.61
203 204 1.139734 CACATCCTCGTCTCCACCG 59.860 63.158 0.00 0.00 0.00 4.94
204 205 2.052690 ACATCCTCGTCTCCACCGG 61.053 63.158 0.00 0.00 0.00 5.28
205 206 3.148279 ATCCTCGTCTCCACCGGC 61.148 66.667 0.00 0.00 0.00 6.13
206 207 3.663815 ATCCTCGTCTCCACCGGCT 62.664 63.158 0.00 0.00 0.00 5.52
207 208 3.827898 CCTCGTCTCCACCGGCTC 61.828 72.222 0.00 0.00 0.00 4.70
208 209 3.827898 CTCGTCTCCACCGGCTCC 61.828 72.222 0.00 0.00 0.00 4.70
209 210 4.671590 TCGTCTCCACCGGCTCCA 62.672 66.667 0.00 0.00 0.00 3.86
210 211 4.436998 CGTCTCCACCGGCTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
211 212 2.997897 GTCTCCACCGGCTCCACT 60.998 66.667 0.00 0.00 0.00 4.00
212 213 2.203788 TCTCCACCGGCTCCACTT 60.204 61.111 0.00 0.00 0.00 3.16
213 214 1.841556 TCTCCACCGGCTCCACTTT 60.842 57.895 0.00 0.00 0.00 2.66
214 215 1.073199 CTCCACCGGCTCCACTTTT 59.927 57.895 0.00 0.00 0.00 2.27
215 216 1.228124 TCCACCGGCTCCACTTTTG 60.228 57.895 0.00 0.00 0.00 2.44
216 217 2.268076 CCACCGGCTCCACTTTTGG 61.268 63.158 0.00 0.00 45.56 3.28
217 218 1.528309 CACCGGCTCCACTTTTGGT 60.528 57.895 0.00 0.00 44.35 3.67
218 219 1.106944 CACCGGCTCCACTTTTGGTT 61.107 55.000 0.00 0.00 44.35 3.67
219 220 0.475044 ACCGGCTCCACTTTTGGTTA 59.525 50.000 0.00 0.00 44.35 2.85
220 221 1.074889 ACCGGCTCCACTTTTGGTTAT 59.925 47.619 0.00 0.00 44.35 1.89
221 222 2.167662 CCGGCTCCACTTTTGGTTATT 58.832 47.619 0.00 0.00 44.35 1.40
222 223 2.560981 CCGGCTCCACTTTTGGTTATTT 59.439 45.455 0.00 0.00 44.35 1.40
223 224 3.366985 CCGGCTCCACTTTTGGTTATTTC 60.367 47.826 0.00 0.00 44.35 2.17
224 225 3.669557 CGGCTCCACTTTTGGTTATTTCG 60.670 47.826 0.00 0.00 44.35 3.46
225 226 3.254903 GGCTCCACTTTTGGTTATTTCGT 59.745 43.478 0.00 0.00 44.35 3.85
226 227 4.226761 GCTCCACTTTTGGTTATTTCGTG 58.773 43.478 0.00 0.00 44.35 4.35
227 228 4.226761 CTCCACTTTTGGTTATTTCGTGC 58.773 43.478 0.00 0.00 44.35 5.34
228 229 3.004944 TCCACTTTTGGTTATTTCGTGCC 59.995 43.478 0.00 0.00 44.35 5.01
229 230 3.005367 CCACTTTTGGTTATTTCGTGCCT 59.995 43.478 0.00 0.00 38.23 4.75
230 231 4.500716 CCACTTTTGGTTATTTCGTGCCTT 60.501 41.667 0.00 0.00 38.23 4.35
231 232 5.047188 CACTTTTGGTTATTTCGTGCCTTT 58.953 37.500 0.00 0.00 0.00 3.11
232 233 6.210078 CACTTTTGGTTATTTCGTGCCTTTA 58.790 36.000 0.00 0.00 0.00 1.85
233 234 6.143278 CACTTTTGGTTATTTCGTGCCTTTAC 59.857 38.462 0.00 0.00 0.00 2.01
234 235 6.040054 ACTTTTGGTTATTTCGTGCCTTTACT 59.960 34.615 0.00 0.00 0.00 2.24
235 236 6.394025 TTTGGTTATTTCGTGCCTTTACTT 57.606 33.333 0.00 0.00 0.00 2.24
236 237 5.365403 TGGTTATTTCGTGCCTTTACTTG 57.635 39.130 0.00 0.00 0.00 3.16
237 238 4.822896 TGGTTATTTCGTGCCTTTACTTGT 59.177 37.500 0.00 0.00 0.00 3.16
238 239 5.151389 GGTTATTTCGTGCCTTTACTTGTG 58.849 41.667 0.00 0.00 0.00 3.33
239 240 2.766970 TTTCGTGCCTTTACTTGTGC 57.233 45.000 0.00 0.00 0.00 4.57
240 241 0.584396 TTCGTGCCTTTACTTGTGCG 59.416 50.000 0.00 0.00 0.00 5.34
241 242 0.249531 TCGTGCCTTTACTTGTGCGA 60.250 50.000 0.00 0.00 0.00 5.10
242 243 0.163788 CGTGCCTTTACTTGTGCGAG 59.836 55.000 0.00 0.00 0.00 5.03
243 244 0.110192 GTGCCTTTACTTGTGCGAGC 60.110 55.000 0.00 0.00 0.00 5.03
244 245 0.250295 TGCCTTTACTTGTGCGAGCT 60.250 50.000 0.00 0.00 0.00 4.09
245 246 0.875059 GCCTTTACTTGTGCGAGCTT 59.125 50.000 0.00 0.00 0.00 3.74
246 247 2.073816 GCCTTTACTTGTGCGAGCTTA 58.926 47.619 0.00 0.00 0.00 3.09
247 248 2.678336 GCCTTTACTTGTGCGAGCTTAT 59.322 45.455 0.00 0.00 0.00 1.73
248 249 3.127030 GCCTTTACTTGTGCGAGCTTATT 59.873 43.478 0.00 0.00 0.00 1.40
249 250 4.379499 GCCTTTACTTGTGCGAGCTTATTT 60.379 41.667 0.00 0.00 0.00 1.40
250 251 5.088739 CCTTTACTTGTGCGAGCTTATTTG 58.911 41.667 0.00 0.00 0.00 2.32
251 252 5.334879 CCTTTACTTGTGCGAGCTTATTTGT 60.335 40.000 0.00 0.00 0.00 2.83
252 253 3.542712 ACTTGTGCGAGCTTATTTGTG 57.457 42.857 0.00 0.00 0.00 3.33
253 254 3.138304 ACTTGTGCGAGCTTATTTGTGA 58.862 40.909 0.00 0.00 0.00 3.58
254 255 3.753272 ACTTGTGCGAGCTTATTTGTGAT 59.247 39.130 0.00 0.00 0.00 3.06
255 256 4.935205 ACTTGTGCGAGCTTATTTGTGATA 59.065 37.500 0.00 0.00 0.00 2.15
256 257 5.586243 ACTTGTGCGAGCTTATTTGTGATAT 59.414 36.000 0.00 0.00 0.00 1.63
257 258 6.761242 ACTTGTGCGAGCTTATTTGTGATATA 59.239 34.615 0.00 0.00 0.00 0.86
258 259 7.442364 ACTTGTGCGAGCTTATTTGTGATATAT 59.558 33.333 0.00 0.00 0.00 0.86
259 260 7.351414 TGTGCGAGCTTATTTGTGATATATC 57.649 36.000 5.73 5.73 0.00 1.63
260 261 7.154656 TGTGCGAGCTTATTTGTGATATATCT 58.845 34.615 13.79 0.00 0.00 1.98
261 262 7.329471 TGTGCGAGCTTATTTGTGATATATCTC 59.671 37.037 13.79 10.62 0.00 2.75
262 263 7.543868 GTGCGAGCTTATTTGTGATATATCTCT 59.456 37.037 13.79 0.00 0.00 3.10
263 264 8.090831 TGCGAGCTTATTTGTGATATATCTCTT 58.909 33.333 13.79 3.36 0.00 2.85
264 265 8.379161 GCGAGCTTATTTGTGATATATCTCTTG 58.621 37.037 13.79 0.00 0.00 3.02
265 266 8.379161 CGAGCTTATTTGTGATATATCTCTTGC 58.621 37.037 13.79 9.13 0.00 4.01
266 267 9.434420 GAGCTTATTTGTGATATATCTCTTGCT 57.566 33.333 13.79 12.63 0.00 3.91
267 268 9.790344 AGCTTATTTGTGATATATCTCTTGCTT 57.210 29.630 13.79 0.00 0.00 3.91
268 269 9.823098 GCTTATTTGTGATATATCTCTTGCTTG 57.177 33.333 13.79 3.62 0.00 4.01
269 270 9.823098 CTTATTTGTGATATATCTCTTGCTTGC 57.177 33.333 13.79 0.00 0.00 4.01
270 271 9.565090 TTATTTGTGATATATCTCTTGCTTGCT 57.435 29.630 13.79 0.00 0.00 3.91
271 272 7.870509 TTTGTGATATATCTCTTGCTTGCTT 57.129 32.000 13.79 0.00 0.00 3.91
272 273 6.856135 TGTGATATATCTCTTGCTTGCTTG 57.144 37.500 13.79 0.00 0.00 4.01
273 274 6.351711 TGTGATATATCTCTTGCTTGCTTGT 58.648 36.000 13.79 0.00 0.00 3.16
274 275 6.259387 TGTGATATATCTCTTGCTTGCTTGTG 59.741 38.462 13.79 0.00 0.00 3.33
275 276 6.259608 GTGATATATCTCTTGCTTGCTTGTGT 59.740 38.462 13.79 0.00 0.00 3.72
276 277 7.439356 GTGATATATCTCTTGCTTGCTTGTGTA 59.561 37.037 13.79 0.00 0.00 2.90
277 278 7.439356 TGATATATCTCTTGCTTGCTTGTGTAC 59.561 37.037 13.79 0.00 0.00 2.90
278 279 3.475566 TCTCTTGCTTGCTTGTGTACT 57.524 42.857 0.00 0.00 0.00 2.73
279 280 3.808728 TCTCTTGCTTGCTTGTGTACTT 58.191 40.909 0.00 0.00 0.00 2.24
280 281 4.956085 TCTCTTGCTTGCTTGTGTACTTA 58.044 39.130 0.00 0.00 0.00 2.24
281 282 5.551233 TCTCTTGCTTGCTTGTGTACTTAT 58.449 37.500 0.00 0.00 0.00 1.73
282 283 5.639506 TCTCTTGCTTGCTTGTGTACTTATC 59.360 40.000 0.00 0.00 0.00 1.75
283 284 5.304778 TCTTGCTTGCTTGTGTACTTATCA 58.695 37.500 0.00 0.00 0.00 2.15
284 285 5.939883 TCTTGCTTGCTTGTGTACTTATCAT 59.060 36.000 0.00 0.00 0.00 2.45
285 286 6.430925 TCTTGCTTGCTTGTGTACTTATCATT 59.569 34.615 0.00 0.00 0.00 2.57
286 287 5.941733 TGCTTGCTTGTGTACTTATCATTG 58.058 37.500 0.00 0.00 0.00 2.82
287 288 5.473162 TGCTTGCTTGTGTACTTATCATTGT 59.527 36.000 0.00 0.00 0.00 2.71
288 289 6.016360 TGCTTGCTTGTGTACTTATCATTGTT 60.016 34.615 0.00 0.00 0.00 2.83
289 290 6.306356 GCTTGCTTGTGTACTTATCATTGTTG 59.694 38.462 0.00 0.00 0.00 3.33
290 291 5.698832 TGCTTGTGTACTTATCATTGTTGC 58.301 37.500 0.00 0.00 0.00 4.17
291 292 5.240403 TGCTTGTGTACTTATCATTGTTGCA 59.760 36.000 0.00 0.00 0.00 4.08
292 293 6.072008 TGCTTGTGTACTTATCATTGTTGCAT 60.072 34.615 0.00 0.00 0.00 3.96
293 294 6.470235 GCTTGTGTACTTATCATTGTTGCATC 59.530 38.462 0.00 0.00 0.00 3.91
294 295 7.446001 TTGTGTACTTATCATTGTTGCATCA 57.554 32.000 0.00 0.00 0.00 3.07
295 296 7.628769 TGTGTACTTATCATTGTTGCATCAT 57.371 32.000 0.00 0.00 0.00 2.45
296 297 8.729805 TGTGTACTTATCATTGTTGCATCATA 57.270 30.769 0.00 0.00 0.00 2.15
297 298 9.341078 TGTGTACTTATCATTGTTGCATCATAT 57.659 29.630 0.00 0.00 0.00 1.78
302 303 9.578576 ACTTATCATTGTTGCATCATATAGGTT 57.421 29.630 0.00 0.00 0.00 3.50
303 304 9.836076 CTTATCATTGTTGCATCATATAGGTTG 57.164 33.333 0.00 0.00 0.00 3.77
304 305 6.075762 TCATTGTTGCATCATATAGGTTGC 57.924 37.500 12.38 12.38 35.67 4.17
305 306 5.829391 TCATTGTTGCATCATATAGGTTGCT 59.171 36.000 18.26 0.00 36.10 3.91
306 307 5.756195 TTGTTGCATCATATAGGTTGCTC 57.244 39.130 18.26 12.75 36.10 4.26
307 308 4.779696 TGTTGCATCATATAGGTTGCTCA 58.220 39.130 18.26 14.57 36.10 4.26
308 309 4.576053 TGTTGCATCATATAGGTTGCTCAC 59.424 41.667 18.26 15.10 36.10 3.51
309 310 4.694760 TGCATCATATAGGTTGCTCACT 57.305 40.909 18.26 0.00 36.10 3.41
310 311 5.039920 TGCATCATATAGGTTGCTCACTT 57.960 39.130 18.26 0.00 36.10 3.16
311 312 6.173427 TGCATCATATAGGTTGCTCACTTA 57.827 37.500 18.26 0.00 36.10 2.24
312 313 6.226052 TGCATCATATAGGTTGCTCACTTAG 58.774 40.000 18.26 0.00 36.10 2.18
313 314 6.183361 TGCATCATATAGGTTGCTCACTTAGT 60.183 38.462 18.26 0.00 36.10 2.24
314 315 6.708054 GCATCATATAGGTTGCTCACTTAGTT 59.292 38.462 12.08 0.00 32.41 2.24
315 316 7.307632 GCATCATATAGGTTGCTCACTTAGTTG 60.308 40.741 12.08 0.00 32.41 3.16
316 317 6.049149 TCATATAGGTTGCTCACTTAGTTGC 58.951 40.000 1.04 1.04 0.00 4.17
317 318 2.638480 AGGTTGCTCACTTAGTTGCA 57.362 45.000 5.85 5.85 0.00 4.08
318 319 3.146104 AGGTTGCTCACTTAGTTGCAT 57.854 42.857 9.88 0.00 35.27 3.96
319 320 4.286297 AGGTTGCTCACTTAGTTGCATA 57.714 40.909 9.88 1.20 35.27 3.14
320 321 4.848357 AGGTTGCTCACTTAGTTGCATAT 58.152 39.130 9.88 0.00 35.27 1.78
321 322 4.878397 AGGTTGCTCACTTAGTTGCATATC 59.122 41.667 9.88 5.35 35.27 1.63
322 323 4.878397 GGTTGCTCACTTAGTTGCATATCT 59.122 41.667 9.88 0.00 35.27 1.98
323 324 6.049149 GGTTGCTCACTTAGTTGCATATCTA 58.951 40.000 9.88 0.00 35.27 1.98
324 325 6.538742 GGTTGCTCACTTAGTTGCATATCTAA 59.461 38.462 9.88 0.00 35.27 2.10
325 326 7.065803 GGTTGCTCACTTAGTTGCATATCTAAA 59.934 37.037 9.88 0.00 35.27 1.85
326 327 7.539712 TGCTCACTTAGTTGCATATCTAAAC 57.460 36.000 5.85 0.00 0.00 2.01
327 328 7.102993 TGCTCACTTAGTTGCATATCTAAACA 58.897 34.615 5.85 0.00 0.00 2.83
328 329 7.606073 TGCTCACTTAGTTGCATATCTAAACAA 59.394 33.333 5.85 0.00 0.00 2.83
329 330 7.905493 GCTCACTTAGTTGCATATCTAAACAAC 59.095 37.037 0.00 0.00 42.08 3.32
330 331 8.263940 TCACTTAGTTGCATATCTAAACAACC 57.736 34.615 0.00 0.00 42.61 3.77
331 332 8.100791 TCACTTAGTTGCATATCTAAACAACCT 58.899 33.333 0.00 0.00 42.61 3.50
332 333 9.378551 CACTTAGTTGCATATCTAAACAACCTA 57.621 33.333 0.00 0.00 42.61 3.08
333 334 9.953565 ACTTAGTTGCATATCTAAACAACCTAA 57.046 29.630 0.00 0.00 42.61 2.69
341 342 9.185192 GCATATCTAAACAACCTAATTTGATGC 57.815 33.333 0.00 0.00 0.00 3.91
345 346 9.643693 ATCTAAACAACCTAATTTGATGCAAAG 57.356 29.630 0.00 0.00 36.76 2.77
346 347 8.637986 TCTAAACAACCTAATTTGATGCAAAGT 58.362 29.630 0.00 0.00 36.76 2.66
347 348 9.260002 CTAAACAACCTAATTTGATGCAAAGTT 57.740 29.630 0.00 0.00 36.76 2.66
348 349 8.504812 AAACAACCTAATTTGATGCAAAGTTT 57.495 26.923 0.00 0.00 36.76 2.66
349 350 9.606631 AAACAACCTAATTTGATGCAAAGTTTA 57.393 25.926 0.00 0.00 36.76 2.01
350 351 9.606631 AACAACCTAATTTGATGCAAAGTTTAA 57.393 25.926 0.00 0.00 36.76 1.52
351 352 9.606631 ACAACCTAATTTGATGCAAAGTTTAAA 57.393 25.926 0.00 0.00 36.76 1.52
393 394 5.932619 AAATTTAGTTGCCTATTCACCCC 57.067 39.130 0.00 0.00 0.00 4.95
394 395 3.375647 TTTAGTTGCCTATTCACCCCC 57.624 47.619 0.00 0.00 0.00 5.40
416 417 5.954153 CCCCCTCTAGTCTACTATATCGA 57.046 47.826 0.00 0.00 0.00 3.59
417 418 6.503560 CCCCCTCTAGTCTACTATATCGAT 57.496 45.833 2.16 2.16 0.00 3.59
418 419 6.527423 CCCCCTCTAGTCTACTATATCGATC 58.473 48.000 0.00 0.00 0.00 3.69
419 420 6.464749 CCCCCTCTAGTCTACTATATCGATCC 60.465 50.000 0.00 0.00 0.00 3.36
420 421 6.328148 CCCCTCTAGTCTACTATATCGATCCT 59.672 46.154 0.00 0.00 0.00 3.24
421 422 7.147444 CCCCTCTAGTCTACTATATCGATCCTT 60.147 44.444 0.00 0.00 0.00 3.36
422 423 8.269317 CCCTCTAGTCTACTATATCGATCCTTT 58.731 40.741 0.00 0.00 0.00 3.11
423 424 9.321562 CCTCTAGTCTACTATATCGATCCTTTC 57.678 40.741 0.00 0.00 0.00 2.62
424 425 9.878667 CTCTAGTCTACTATATCGATCCTTTCA 57.121 37.037 0.00 0.00 0.00 2.69
456 460 4.495422 CTCGTTGAGCCAACTACTATTGT 58.505 43.478 13.76 0.00 41.62 2.71
457 461 4.890088 TCGTTGAGCCAACTACTATTGTT 58.110 39.130 13.76 0.00 41.62 2.83
470 492 0.392327 TATTGTTGCTGCTGCCGCTA 60.392 50.000 16.81 6.85 38.71 4.26
483 505 0.173708 GCCGCTACACTCAAGCTAGT 59.826 55.000 0.00 0.00 37.85 2.57
489 511 4.974368 CTACACTCAAGCTAGTAGCAGT 57.026 45.455 23.77 15.23 45.56 4.40
546 568 1.750399 GGCAGCCGTTCATGTCCAT 60.750 57.895 0.00 0.00 0.00 3.41
613 635 1.707427 ACTGACAAGGGCTTCAAGGAT 59.293 47.619 0.00 0.00 0.00 3.24
676 698 1.227943 GCAAGAGGTGTCTGCCACA 60.228 57.895 0.00 0.00 46.44 4.17
726 748 3.261897 AGAAGTCGATGGATCCAAGTGTT 59.738 43.478 20.67 12.87 0.00 3.32
839 861 1.948144 GCTCACAGCCCTCTTCCTTTC 60.948 57.143 0.00 0.00 34.48 2.62
854 876 2.304761 TCCTTTCCATACTGTCCACCAC 59.695 50.000 0.00 0.00 0.00 4.16
958 980 4.323792 CCATCCAGAACTACAACCAGATGT 60.324 45.833 0.00 0.00 37.32 3.06
1113 1137 0.962356 AGCCCTTCGACAAGCCATTG 60.962 55.000 0.00 0.00 42.46 2.82
1224 1251 0.037303 CAACAGCCATCAGGGAGTGT 59.963 55.000 0.00 0.00 40.01 3.55
1261 1288 0.180406 CCCTAACCTGTATGGCGCTT 59.820 55.000 7.64 0.00 40.22 4.68
1285 1312 3.970410 CCCAGGGTGGCTTCAGCA 61.970 66.667 0.00 0.00 44.36 4.41
1619 1647 2.549992 CGACACCCTCTTTTGGATGTGA 60.550 50.000 0.00 0.00 33.54 3.58
1690 1722 6.710597 ATGATCATGCATGCTTTACTTCTT 57.289 33.333 22.25 4.25 0.00 2.52
1706 1738 8.458573 TTTACTTCTTTTCTGCTCCATTGTTA 57.541 30.769 0.00 0.00 0.00 2.41
1716 1748 3.320256 TGCTCCATTGTTATTTGTGTGCA 59.680 39.130 0.00 0.00 0.00 4.57
1817 1849 2.955660 GTGTTCATTGGTGAGGTTCCAA 59.044 45.455 0.00 0.00 46.82 3.53
1853 1885 1.337167 GGGAAGAAGCCAATGCACAAC 60.337 52.381 0.00 0.00 41.13 3.32
1877 1909 3.316029 GGCATCATATAGCAACAGCAACA 59.684 43.478 0.00 0.00 0.00 3.33
1924 1956 1.941668 GCAGAACAAGCTTACTCCGCT 60.942 52.381 0.00 0.00 39.94 5.52
1960 1992 2.740055 GGCAGCAGTGTCGACAGG 60.740 66.667 20.73 15.45 0.00 4.00
1970 2002 1.122632 TGTCGACAGGGCCAAGGTTA 61.123 55.000 15.76 0.00 0.00 2.85
2108 2141 2.609459 GTGATCATTGTGGGTAAGCTCG 59.391 50.000 0.00 0.00 0.00 5.03
2190 2223 4.762016 CCACTAGGGCCAATGCAA 57.238 55.556 6.18 0.00 40.13 4.08
2191 2224 3.212377 CCACTAGGGCCAATGCAAT 57.788 52.632 6.18 0.00 40.13 3.56
2212 2245 4.264460 TCAACCAAACAAAGTGCACTTT 57.736 36.364 33.85 33.85 46.23 2.66
2213 2246 4.636249 TCAACCAAACAAAGTGCACTTTT 58.364 34.783 36.19 25.21 43.07 2.27
2221 2254 7.491048 CCAAACAAAGTGCACTTTTGTATTACT 59.509 33.333 36.19 20.23 43.07 2.24
2222 2255 9.509855 CAAACAAAGTGCACTTTTGTATTACTA 57.490 29.630 36.19 0.00 43.07 1.82
2223 2256 9.730420 AAACAAAGTGCACTTTTGTATTACTAG 57.270 29.630 36.19 24.03 43.07 2.57
2356 2389 1.826054 CTGGAACCAAACACGCCCA 60.826 57.895 0.00 0.00 0.00 5.36
2364 2397 3.096092 ACCAAACACGCCCATAATGATT 58.904 40.909 0.00 0.00 0.00 2.57
2365 2398 3.513515 ACCAAACACGCCCATAATGATTT 59.486 39.130 0.00 0.00 0.00 2.17
2366 2399 4.111916 CCAAACACGCCCATAATGATTTC 58.888 43.478 0.00 0.00 0.00 2.17
2367 2400 4.111916 CAAACACGCCCATAATGATTTCC 58.888 43.478 0.00 0.00 0.00 3.13
2368 2401 3.297134 ACACGCCCATAATGATTTCCT 57.703 42.857 0.00 0.00 0.00 3.36
2369 2402 3.631250 ACACGCCCATAATGATTTCCTT 58.369 40.909 0.00 0.00 0.00 3.36
2370 2403 3.381272 ACACGCCCATAATGATTTCCTTG 59.619 43.478 0.00 0.00 0.00 3.61
2371 2404 2.958355 ACGCCCATAATGATTTCCTTGG 59.042 45.455 0.00 0.00 0.00 3.61
2372 2405 2.288395 CGCCCATAATGATTTCCTTGGC 60.288 50.000 0.00 0.00 0.00 4.52
2373 2406 2.967887 GCCCATAATGATTTCCTTGGCT 59.032 45.455 0.00 0.00 33.64 4.75
2374 2407 3.243975 GCCCATAATGATTTCCTTGGCTG 60.244 47.826 0.00 0.00 33.64 4.85
2375 2408 3.243975 CCCATAATGATTTCCTTGGCTGC 60.244 47.826 0.00 0.00 0.00 5.25
2376 2409 3.385433 CCATAATGATTTCCTTGGCTGCA 59.615 43.478 0.50 0.00 0.00 4.41
2377 2410 4.039973 CCATAATGATTTCCTTGGCTGCAT 59.960 41.667 0.50 0.00 0.00 3.96
2378 2411 3.536956 AATGATTTCCTTGGCTGCATG 57.463 42.857 0.50 0.00 0.00 4.06
2379 2412 0.533491 TGATTTCCTTGGCTGCATGC 59.467 50.000 11.82 11.82 41.94 4.06
2380 2413 0.533491 GATTTCCTTGGCTGCATGCA 59.467 50.000 21.29 21.29 45.15 3.96
2381 2414 1.138266 GATTTCCTTGGCTGCATGCAT 59.862 47.619 22.97 1.00 45.15 3.96
2382 2415 0.248012 TTTCCTTGGCTGCATGCATG 59.752 50.000 22.97 22.70 45.15 4.06
2383 2416 0.612453 TTCCTTGGCTGCATGCATGA 60.612 50.000 30.64 13.95 45.15 3.07
2384 2417 0.612453 TCCTTGGCTGCATGCATGAA 60.612 50.000 30.64 19.89 45.15 2.57
2385 2418 0.248012 CCTTGGCTGCATGCATGAAA 59.752 50.000 30.64 15.85 45.15 2.69
2386 2419 1.134521 CCTTGGCTGCATGCATGAAAT 60.135 47.619 30.64 0.00 45.15 2.17
2387 2420 2.627945 CTTGGCTGCATGCATGAAATT 58.372 42.857 30.64 0.00 45.15 1.82
2388 2421 2.303163 TGGCTGCATGCATGAAATTC 57.697 45.000 30.64 12.36 45.15 2.17
2389 2422 1.550976 TGGCTGCATGCATGAAATTCA 59.449 42.857 30.64 16.29 45.15 2.57
2390 2423 2.169561 TGGCTGCATGCATGAAATTCAT 59.830 40.909 30.64 2.07 45.15 2.57
2391 2424 3.385111 TGGCTGCATGCATGAAATTCATA 59.615 39.130 30.64 5.15 45.15 2.15
2392 2425 3.987868 GGCTGCATGCATGAAATTCATAG 59.012 43.478 30.64 7.17 45.15 2.23
2393 2426 4.261867 GGCTGCATGCATGAAATTCATAGA 60.262 41.667 30.64 0.00 45.15 1.98
2394 2427 5.470368 GCTGCATGCATGAAATTCATAGAT 58.530 37.500 30.64 1.03 42.31 1.98
2395 2428 5.926542 GCTGCATGCATGAAATTCATAGATT 59.073 36.000 30.64 0.00 42.31 2.40
2396 2429 6.423905 GCTGCATGCATGAAATTCATAGATTT 59.576 34.615 30.64 0.00 42.31 2.17
2397 2430 7.042051 GCTGCATGCATGAAATTCATAGATTTT 60.042 33.333 30.64 0.00 42.31 1.82
2398 2431 8.725405 TGCATGCATGAAATTCATAGATTTTT 57.275 26.923 30.64 0.00 34.28 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.356289 CGACCAAACCTTTACAAACAAGG 58.644 43.478 0.00 0.00 45.74 3.61
6 7 3.794564 GCGACCAAACCTTTACAAACAAG 59.205 43.478 0.00 0.00 0.00 3.16
7 8 3.429135 GGCGACCAAACCTTTACAAACAA 60.429 43.478 0.00 0.00 0.00 2.83
8 9 2.099427 GGCGACCAAACCTTTACAAACA 59.901 45.455 0.00 0.00 0.00 2.83
9 10 2.734670 GGCGACCAAACCTTTACAAAC 58.265 47.619 0.00 0.00 0.00 2.93
10 11 1.334243 CGGCGACCAAACCTTTACAAA 59.666 47.619 0.00 0.00 0.00 2.83
11 12 0.945813 CGGCGACCAAACCTTTACAA 59.054 50.000 0.00 0.00 0.00 2.41
12 13 1.508808 GCGGCGACCAAACCTTTACA 61.509 55.000 12.98 0.00 0.00 2.41
13 14 1.208358 GCGGCGACCAAACCTTTAC 59.792 57.895 12.98 0.00 0.00 2.01
14 15 1.967494 GGCGGCGACCAAACCTTTA 60.967 57.895 12.98 0.00 0.00 1.85
15 16 3.292159 GGCGGCGACCAAACCTTT 61.292 61.111 12.98 0.00 0.00 3.11
16 17 4.265056 AGGCGGCGACCAAACCTT 62.265 61.111 10.28 0.00 0.00 3.50
17 18 4.699522 GAGGCGGCGACCAAACCT 62.700 66.667 10.28 4.85 0.00 3.50
20 21 4.257654 TTGGAGGCGGCGACCAAA 62.258 61.111 29.54 18.48 40.12 3.28
21 22 4.697756 CTTGGAGGCGGCGACCAA 62.698 66.667 29.53 29.53 40.68 3.67
31 32 0.625849 ACTATTGGTGCCCTTGGAGG 59.374 55.000 0.00 0.00 34.30 4.30
32 33 1.683011 CCACTATTGGTGCCCTTGGAG 60.683 57.143 0.00 0.00 44.08 3.86
33 34 0.331278 CCACTATTGGTGCCCTTGGA 59.669 55.000 0.00 0.00 44.08 3.53
34 35 0.331278 TCCACTATTGGTGCCCTTGG 59.669 55.000 0.00 0.00 44.35 3.61
35 36 2.214376 TTCCACTATTGGTGCCCTTG 57.786 50.000 0.00 0.00 44.35 3.61
36 37 2.311542 TGATTCCACTATTGGTGCCCTT 59.688 45.455 0.00 0.00 44.35 3.95
37 38 1.922447 TGATTCCACTATTGGTGCCCT 59.078 47.619 0.00 0.00 44.35 5.19
38 39 2.024414 GTGATTCCACTATTGGTGCCC 58.976 52.381 0.00 0.00 44.35 5.36
39 40 1.670811 CGTGATTCCACTATTGGTGCC 59.329 52.381 0.00 0.00 44.35 5.01
40 41 2.351726 GTCGTGATTCCACTATTGGTGC 59.648 50.000 0.00 0.00 44.35 5.01
41 42 3.595173 TGTCGTGATTCCACTATTGGTG 58.405 45.455 0.00 0.00 44.35 4.17
42 43 3.973206 TGTCGTGATTCCACTATTGGT 57.027 42.857 0.00 0.00 44.35 3.67
43 44 4.697514 AGATGTCGTGATTCCACTATTGG 58.302 43.478 0.00 0.00 45.56 3.16
44 45 4.442403 CGAGATGTCGTGATTCCACTATTG 59.558 45.833 3.70 0.00 41.57 1.90
45 46 4.499865 CCGAGATGTCGTGATTCCACTATT 60.500 45.833 11.66 0.00 45.30 1.73
46 47 3.004839 CCGAGATGTCGTGATTCCACTAT 59.995 47.826 11.66 0.00 45.30 2.12
47 48 2.357952 CCGAGATGTCGTGATTCCACTA 59.642 50.000 11.66 0.00 45.30 2.74
48 49 1.135139 CCGAGATGTCGTGATTCCACT 59.865 52.381 11.66 0.00 45.30 4.00
49 50 1.134367 TCCGAGATGTCGTGATTCCAC 59.866 52.381 11.66 0.00 45.30 4.02
50 51 1.470051 TCCGAGATGTCGTGATTCCA 58.530 50.000 11.66 0.00 45.30 3.53
51 52 2.797156 CAATCCGAGATGTCGTGATTCC 59.203 50.000 19.09 0.00 45.30 3.01
52 53 3.243877 CACAATCCGAGATGTCGTGATTC 59.756 47.826 19.09 0.00 45.30 2.52
53 54 3.190079 CACAATCCGAGATGTCGTGATT 58.810 45.455 17.33 17.33 45.30 2.57
54 55 2.166459 ACACAATCCGAGATGTCGTGAT 59.834 45.455 11.66 10.36 45.30 3.06
55 56 1.544246 ACACAATCCGAGATGTCGTGA 59.456 47.619 11.66 8.51 45.30 4.35
56 57 1.655597 CACACAATCCGAGATGTCGTG 59.344 52.381 11.66 5.70 45.30 4.35
57 58 1.544246 TCACACAATCCGAGATGTCGT 59.456 47.619 11.66 0.00 45.30 4.34
58 59 2.188524 CTCACACAATCCGAGATGTCG 58.811 52.381 5.06 5.06 46.39 4.35
59 60 2.544685 CCTCACACAATCCGAGATGTC 58.455 52.381 0.00 0.00 0.00 3.06
60 61 1.208052 CCCTCACACAATCCGAGATGT 59.792 52.381 0.00 0.00 0.00 3.06
61 62 1.945387 CCCTCACACAATCCGAGATG 58.055 55.000 0.00 0.00 0.00 2.90
62 63 0.179000 GCCCTCACACAATCCGAGAT 59.821 55.000 0.00 0.00 0.00 2.75
63 64 1.596934 GCCCTCACACAATCCGAGA 59.403 57.895 0.00 0.00 0.00 4.04
64 65 1.811266 CGCCCTCACACAATCCGAG 60.811 63.158 0.00 0.00 0.00 4.63
65 66 2.264480 CGCCCTCACACAATCCGA 59.736 61.111 0.00 0.00 0.00 4.55
66 67 2.047274 ACGCCCTCACACAATCCG 60.047 61.111 0.00 0.00 0.00 4.18
67 68 1.003839 TCACGCCCTCACACAATCC 60.004 57.895 0.00 0.00 0.00 3.01
68 69 1.021390 CCTCACGCCCTCACACAATC 61.021 60.000 0.00 0.00 0.00 2.67
69 70 1.003355 CCTCACGCCCTCACACAAT 60.003 57.895 0.00 0.00 0.00 2.71
70 71 2.099652 CTCCTCACGCCCTCACACAA 62.100 60.000 0.00 0.00 0.00 3.33
71 72 2.523168 TCCTCACGCCCTCACACA 60.523 61.111 0.00 0.00 0.00 3.72
72 73 1.816863 TTCTCCTCACGCCCTCACAC 61.817 60.000 0.00 0.00 0.00 3.82
73 74 0.904865 ATTCTCCTCACGCCCTCACA 60.905 55.000 0.00 0.00 0.00 3.58
74 75 1.112113 TATTCTCCTCACGCCCTCAC 58.888 55.000 0.00 0.00 0.00 3.51
75 76 1.112113 GTATTCTCCTCACGCCCTCA 58.888 55.000 0.00 0.00 0.00 3.86
76 77 0.030908 CGTATTCTCCTCACGCCCTC 59.969 60.000 0.00 0.00 0.00 4.30
77 78 1.392710 CCGTATTCTCCTCACGCCCT 61.393 60.000 0.00 0.00 34.42 5.19
78 79 1.067582 CCGTATTCTCCTCACGCCC 59.932 63.158 0.00 0.00 34.42 6.13
79 80 0.527817 CACCGTATTCTCCTCACGCC 60.528 60.000 0.00 0.00 34.42 5.68
80 81 0.527817 CCACCGTATTCTCCTCACGC 60.528 60.000 0.00 0.00 34.42 5.34
81 82 0.527817 GCCACCGTATTCTCCTCACG 60.528 60.000 0.00 0.00 35.50 4.35
82 83 0.179081 GGCCACCGTATTCTCCTCAC 60.179 60.000 0.00 0.00 0.00 3.51
83 84 1.335132 GGGCCACCGTATTCTCCTCA 61.335 60.000 4.39 0.00 0.00 3.86
84 85 1.049289 AGGGCCACCGTATTCTCCTC 61.049 60.000 6.18 0.00 43.47 3.71
85 86 0.263765 TAGGGCCACCGTATTCTCCT 59.736 55.000 6.18 0.00 43.47 3.69
86 87 0.680061 CTAGGGCCACCGTATTCTCC 59.320 60.000 6.18 0.00 43.47 3.71
87 88 1.068741 CACTAGGGCCACCGTATTCTC 59.931 57.143 6.18 0.00 43.47 2.87
88 89 1.120530 CACTAGGGCCACCGTATTCT 58.879 55.000 6.18 0.00 43.47 2.40
89 90 0.106149 CCACTAGGGCCACCGTATTC 59.894 60.000 6.18 0.00 43.47 1.75
90 91 2.218066 CCACTAGGGCCACCGTATT 58.782 57.895 6.18 0.00 43.47 1.89
91 92 3.965660 CCACTAGGGCCACCGTAT 58.034 61.111 6.18 0.00 43.47 3.06
100 101 0.988145 TCCCCAAGATGCCACTAGGG 60.988 60.000 0.00 0.00 40.85 3.53
101 102 0.471617 CTCCCCAAGATGCCACTAGG 59.528 60.000 0.00 0.00 38.23 3.02
102 103 0.179034 GCTCCCCAAGATGCCACTAG 60.179 60.000 0.00 0.00 0.00 2.57
103 104 0.913934 TGCTCCCCAAGATGCCACTA 60.914 55.000 0.00 0.00 0.00 2.74
104 105 1.578215 ATGCTCCCCAAGATGCCACT 61.578 55.000 0.00 0.00 0.00 4.00
105 106 0.685458 AATGCTCCCCAAGATGCCAC 60.685 55.000 0.00 0.00 0.00 5.01
106 107 0.685131 CAATGCTCCCCAAGATGCCA 60.685 55.000 0.00 0.00 0.00 4.92
107 108 0.685458 ACAATGCTCCCCAAGATGCC 60.685 55.000 0.00 0.00 0.00 4.40
108 109 0.458669 CACAATGCTCCCCAAGATGC 59.541 55.000 0.00 0.00 0.00 3.91
109 110 0.458669 GCACAATGCTCCCCAAGATG 59.541 55.000 0.00 0.00 40.96 2.90
110 111 0.685458 GGCACAATGCTCCCCAAGAT 60.685 55.000 0.13 0.00 44.28 2.40
111 112 1.304381 GGCACAATGCTCCCCAAGA 60.304 57.895 0.13 0.00 44.28 3.02
112 113 1.304713 AGGCACAATGCTCCCCAAG 60.305 57.895 0.13 0.00 44.28 3.61
113 114 1.304381 GAGGCACAATGCTCCCCAA 60.304 57.895 0.13 0.00 44.28 4.12
114 115 2.356278 GAGGCACAATGCTCCCCA 59.644 61.111 0.13 0.00 44.28 4.96
115 116 2.440980 GGAGGCACAATGCTCCCC 60.441 66.667 0.13 0.00 44.28 4.81
116 117 2.048603 GTGGAGGCACAATGCTCCC 61.049 63.158 13.32 9.63 44.28 4.30
117 118 1.303561 TGTGGAGGCACAATGCTCC 60.304 57.895 0.13 6.56 44.28 4.70
118 119 1.589716 GGTGTGGAGGCACAATGCTC 61.590 60.000 0.13 0.00 44.28 4.26
119 120 1.604593 GGTGTGGAGGCACAATGCT 60.605 57.895 0.13 0.00 44.28 3.79
120 121 2.964978 GGTGTGGAGGCACAATGC 59.035 61.111 0.00 0.00 44.08 3.56
121 122 2.981560 GCGGTGTGGAGGCACAATG 61.982 63.158 0.00 0.00 40.89 2.82
122 123 2.672996 GCGGTGTGGAGGCACAAT 60.673 61.111 0.00 0.00 40.89 2.71
123 124 3.825160 GAGCGGTGTGGAGGCACAA 62.825 63.158 0.00 0.00 40.89 3.33
124 125 4.314440 GAGCGGTGTGGAGGCACA 62.314 66.667 0.00 0.00 40.89 4.57
127 128 4.329545 TTGGAGCGGTGTGGAGGC 62.330 66.667 0.00 0.00 0.00 4.70
128 129 2.358737 GTTGGAGCGGTGTGGAGG 60.359 66.667 0.00 0.00 0.00 4.30
129 130 2.738521 CGTTGGAGCGGTGTGGAG 60.739 66.667 0.00 0.00 0.00 3.86
130 131 4.308458 CCGTTGGAGCGGTGTGGA 62.308 66.667 0.00 0.00 46.11 4.02
140 141 1.829222 GGGAAGTATGTCTCCGTTGGA 59.171 52.381 0.00 0.00 0.00 3.53
141 142 1.831736 AGGGAAGTATGTCTCCGTTGG 59.168 52.381 0.00 0.00 0.00 3.77
142 143 3.056107 TGAAGGGAAGTATGTCTCCGTTG 60.056 47.826 1.07 0.00 31.52 4.10
143 144 3.170717 TGAAGGGAAGTATGTCTCCGTT 58.829 45.455 0.00 0.00 33.69 4.44
144 145 2.816411 TGAAGGGAAGTATGTCTCCGT 58.184 47.619 0.00 0.00 0.00 4.69
145 146 3.887621 TTGAAGGGAAGTATGTCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
146 147 4.518249 CCTTTGAAGGGAAGTATGTCTCC 58.482 47.826 1.68 0.00 42.66 3.71
161 162 2.173996 ACCGAAGTTCCTTCCCTTTGAA 59.826 45.455 0.00 0.00 37.20 2.69
162 163 1.772453 ACCGAAGTTCCTTCCCTTTGA 59.228 47.619 0.00 0.00 37.20 2.69
163 164 2.271944 ACCGAAGTTCCTTCCCTTTG 57.728 50.000 0.00 0.00 37.20 2.77
164 165 3.136992 TGTTACCGAAGTTCCTTCCCTTT 59.863 43.478 0.00 0.00 37.20 3.11
165 166 2.707257 TGTTACCGAAGTTCCTTCCCTT 59.293 45.455 0.00 0.00 37.20 3.95
166 167 2.038164 GTGTTACCGAAGTTCCTTCCCT 59.962 50.000 0.00 0.00 37.20 4.20
167 168 2.224354 TGTGTTACCGAAGTTCCTTCCC 60.224 50.000 0.00 0.00 37.20 3.97
168 169 3.116079 TGTGTTACCGAAGTTCCTTCC 57.884 47.619 0.00 0.00 37.20 3.46
169 170 3.683340 GGATGTGTTACCGAAGTTCCTTC 59.317 47.826 0.00 0.00 37.16 3.46
170 171 3.326880 AGGATGTGTTACCGAAGTTCCTT 59.673 43.478 0.00 0.00 0.00 3.36
171 172 2.904434 AGGATGTGTTACCGAAGTTCCT 59.096 45.455 0.00 0.00 0.00 3.36
172 173 3.259902 GAGGATGTGTTACCGAAGTTCC 58.740 50.000 0.00 0.00 0.00 3.62
173 174 2.921754 CGAGGATGTGTTACCGAAGTTC 59.078 50.000 0.00 0.00 0.00 3.01
174 175 2.298163 ACGAGGATGTGTTACCGAAGTT 59.702 45.455 0.00 0.00 0.00 2.66
175 176 1.891150 ACGAGGATGTGTTACCGAAGT 59.109 47.619 0.00 0.00 0.00 3.01
176 177 2.163815 AGACGAGGATGTGTTACCGAAG 59.836 50.000 0.00 0.00 0.00 3.79
177 178 2.163010 GAGACGAGGATGTGTTACCGAA 59.837 50.000 0.00 0.00 0.00 4.30
178 179 1.741706 GAGACGAGGATGTGTTACCGA 59.258 52.381 0.00 0.00 0.00 4.69
179 180 1.202268 GGAGACGAGGATGTGTTACCG 60.202 57.143 0.00 0.00 0.00 4.02
180 181 1.822990 TGGAGACGAGGATGTGTTACC 59.177 52.381 0.00 0.00 0.00 2.85
181 182 2.416972 GGTGGAGACGAGGATGTGTTAC 60.417 54.545 0.00 0.00 0.00 2.50
182 183 1.822990 GGTGGAGACGAGGATGTGTTA 59.177 52.381 0.00 0.00 0.00 2.41
183 184 0.608640 GGTGGAGACGAGGATGTGTT 59.391 55.000 0.00 0.00 0.00 3.32
184 185 1.595993 CGGTGGAGACGAGGATGTGT 61.596 60.000 0.00 0.00 0.00 3.72
185 186 1.139734 CGGTGGAGACGAGGATGTG 59.860 63.158 0.00 0.00 0.00 3.21
186 187 2.052690 CCGGTGGAGACGAGGATGT 61.053 63.158 0.00 0.00 0.00 3.06
187 188 2.808315 CCGGTGGAGACGAGGATG 59.192 66.667 0.00 0.00 0.00 3.51
188 189 3.148279 GCCGGTGGAGACGAGGAT 61.148 66.667 1.90 0.00 0.00 3.24
189 190 4.361971 AGCCGGTGGAGACGAGGA 62.362 66.667 1.90 0.00 0.00 3.71
190 191 3.827898 GAGCCGGTGGAGACGAGG 61.828 72.222 1.90 0.00 0.00 4.63
191 192 3.827898 GGAGCCGGTGGAGACGAG 61.828 72.222 1.90 0.00 0.00 4.18
192 193 4.671590 TGGAGCCGGTGGAGACGA 62.672 66.667 1.90 0.00 0.00 4.20
193 194 4.436998 GTGGAGCCGGTGGAGACG 62.437 72.222 1.90 0.00 0.00 4.18
194 195 2.113243 AAAGTGGAGCCGGTGGAGAC 62.113 60.000 1.90 0.00 0.00 3.36
195 196 1.415672 AAAAGTGGAGCCGGTGGAGA 61.416 55.000 1.90 0.00 0.00 3.71
196 197 1.073199 AAAAGTGGAGCCGGTGGAG 59.927 57.895 1.90 0.00 0.00 3.86
197 198 1.228124 CAAAAGTGGAGCCGGTGGA 60.228 57.895 1.90 0.00 0.00 4.02
198 199 3.354678 CAAAAGTGGAGCCGGTGG 58.645 61.111 1.90 0.00 0.00 4.61
208 209 4.237349 AGGCACGAAATAACCAAAAGTG 57.763 40.909 0.00 0.00 0.00 3.16
209 210 4.929819 AAGGCACGAAATAACCAAAAGT 57.070 36.364 0.00 0.00 0.00 2.66
210 211 6.443792 AGTAAAGGCACGAAATAACCAAAAG 58.556 36.000 0.00 0.00 0.00 2.27
211 212 6.394025 AGTAAAGGCACGAAATAACCAAAA 57.606 33.333 0.00 0.00 0.00 2.44
212 213 6.183360 ACAAGTAAAGGCACGAAATAACCAAA 60.183 34.615 0.00 0.00 0.00 3.28
213 214 5.299782 ACAAGTAAAGGCACGAAATAACCAA 59.700 36.000 0.00 0.00 0.00 3.67
214 215 4.822896 ACAAGTAAAGGCACGAAATAACCA 59.177 37.500 0.00 0.00 0.00 3.67
215 216 5.151389 CACAAGTAAAGGCACGAAATAACC 58.849 41.667 0.00 0.00 0.00 2.85
216 217 4.615541 GCACAAGTAAAGGCACGAAATAAC 59.384 41.667 0.00 0.00 0.00 1.89
217 218 4.611807 CGCACAAGTAAAGGCACGAAATAA 60.612 41.667 0.00 0.00 0.00 1.40
218 219 3.120477 CGCACAAGTAAAGGCACGAAATA 60.120 43.478 0.00 0.00 0.00 1.40
219 220 2.350388 CGCACAAGTAAAGGCACGAAAT 60.350 45.455 0.00 0.00 0.00 2.17
220 221 1.003331 CGCACAAGTAAAGGCACGAAA 60.003 47.619 0.00 0.00 0.00 3.46
221 222 0.584396 CGCACAAGTAAAGGCACGAA 59.416 50.000 0.00 0.00 0.00 3.85
222 223 0.249531 TCGCACAAGTAAAGGCACGA 60.250 50.000 0.00 0.00 0.00 4.35
223 224 0.163788 CTCGCACAAGTAAAGGCACG 59.836 55.000 0.00 0.00 0.00 5.34
224 225 0.110192 GCTCGCACAAGTAAAGGCAC 60.110 55.000 0.00 0.00 0.00 5.01
225 226 0.250295 AGCTCGCACAAGTAAAGGCA 60.250 50.000 0.00 0.00 0.00 4.75
226 227 0.875059 AAGCTCGCACAAGTAAAGGC 59.125 50.000 0.00 0.00 0.00 4.35
227 228 4.946784 AATAAGCTCGCACAAGTAAAGG 57.053 40.909 0.00 0.00 0.00 3.11
228 229 5.565259 CACAAATAAGCTCGCACAAGTAAAG 59.435 40.000 0.00 0.00 0.00 1.85
229 230 5.237561 TCACAAATAAGCTCGCACAAGTAAA 59.762 36.000 0.00 0.00 0.00 2.01
230 231 4.752604 TCACAAATAAGCTCGCACAAGTAA 59.247 37.500 0.00 0.00 0.00 2.24
231 232 4.311606 TCACAAATAAGCTCGCACAAGTA 58.688 39.130 0.00 0.00 0.00 2.24
232 233 3.138304 TCACAAATAAGCTCGCACAAGT 58.862 40.909 0.00 0.00 0.00 3.16
233 234 3.811722 TCACAAATAAGCTCGCACAAG 57.188 42.857 0.00 0.00 0.00 3.16
234 235 7.657354 AGATATATCACAAATAAGCTCGCACAA 59.343 33.333 15.08 0.00 0.00 3.33
235 236 7.154656 AGATATATCACAAATAAGCTCGCACA 58.845 34.615 15.08 0.00 0.00 4.57
236 237 7.543868 AGAGATATATCACAAATAAGCTCGCAC 59.456 37.037 15.08 0.00 0.00 5.34
237 238 7.606349 AGAGATATATCACAAATAAGCTCGCA 58.394 34.615 15.08 0.00 0.00 5.10
238 239 8.379161 CAAGAGATATATCACAAATAAGCTCGC 58.621 37.037 15.08 0.00 0.00 5.03
239 240 8.379161 GCAAGAGATATATCACAAATAAGCTCG 58.621 37.037 15.08 0.00 0.00 5.03
240 241 9.434420 AGCAAGAGATATATCACAAATAAGCTC 57.566 33.333 15.08 0.05 0.00 4.09
241 242 9.790344 AAGCAAGAGATATATCACAAATAAGCT 57.210 29.630 15.08 9.32 0.00 3.74
242 243 9.823098 CAAGCAAGAGATATATCACAAATAAGC 57.177 33.333 15.08 7.47 0.00 3.09
243 244 9.823098 GCAAGCAAGAGATATATCACAAATAAG 57.177 33.333 15.08 1.06 0.00 1.73
244 245 9.565090 AGCAAGCAAGAGATATATCACAAATAA 57.435 29.630 15.08 0.00 0.00 1.40
245 246 9.565090 AAGCAAGCAAGAGATATATCACAAATA 57.435 29.630 15.08 0.00 0.00 1.40
246 247 8.350722 CAAGCAAGCAAGAGATATATCACAAAT 58.649 33.333 15.08 0.00 0.00 2.32
247 248 7.337689 ACAAGCAAGCAAGAGATATATCACAAA 59.662 33.333 15.08 0.00 0.00 2.83
248 249 6.825213 ACAAGCAAGCAAGAGATATATCACAA 59.175 34.615 15.08 0.00 0.00 3.33
249 250 6.259387 CACAAGCAAGCAAGAGATATATCACA 59.741 38.462 15.08 0.00 0.00 3.58
250 251 6.259608 ACACAAGCAAGCAAGAGATATATCAC 59.740 38.462 15.08 8.69 0.00 3.06
251 252 6.351711 ACACAAGCAAGCAAGAGATATATCA 58.648 36.000 15.08 0.00 0.00 2.15
252 253 6.857777 ACACAAGCAAGCAAGAGATATATC 57.142 37.500 4.42 4.42 0.00 1.63
253 254 7.504403 AGTACACAAGCAAGCAAGAGATATAT 58.496 34.615 0.00 0.00 0.00 0.86
254 255 6.878317 AGTACACAAGCAAGCAAGAGATATA 58.122 36.000 0.00 0.00 0.00 0.86
255 256 5.738909 AGTACACAAGCAAGCAAGAGATAT 58.261 37.500 0.00 0.00 0.00 1.63
256 257 5.152623 AGTACACAAGCAAGCAAGAGATA 57.847 39.130 0.00 0.00 0.00 1.98
257 258 4.013267 AGTACACAAGCAAGCAAGAGAT 57.987 40.909 0.00 0.00 0.00 2.75
258 259 3.475566 AGTACACAAGCAAGCAAGAGA 57.524 42.857 0.00 0.00 0.00 3.10
259 260 5.409520 TGATAAGTACACAAGCAAGCAAGAG 59.590 40.000 0.00 0.00 0.00 2.85
260 261 5.304778 TGATAAGTACACAAGCAAGCAAGA 58.695 37.500 0.00 0.00 0.00 3.02
261 262 5.611796 TGATAAGTACACAAGCAAGCAAG 57.388 39.130 0.00 0.00 0.00 4.01
262 263 6.016360 ACAATGATAAGTACACAAGCAAGCAA 60.016 34.615 0.00 0.00 0.00 3.91
263 264 5.473162 ACAATGATAAGTACACAAGCAAGCA 59.527 36.000 0.00 0.00 0.00 3.91
264 265 5.942872 ACAATGATAAGTACACAAGCAAGC 58.057 37.500 0.00 0.00 0.00 4.01
265 266 6.306356 GCAACAATGATAAGTACACAAGCAAG 59.694 38.462 0.00 0.00 0.00 4.01
266 267 6.148948 GCAACAATGATAAGTACACAAGCAA 58.851 36.000 0.00 0.00 0.00 3.91
267 268 5.240403 TGCAACAATGATAAGTACACAAGCA 59.760 36.000 0.00 0.00 0.00 3.91
268 269 5.698832 TGCAACAATGATAAGTACACAAGC 58.301 37.500 0.00 0.00 0.00 4.01
269 270 7.529158 TGATGCAACAATGATAAGTACACAAG 58.471 34.615 0.00 0.00 0.00 3.16
270 271 7.446001 TGATGCAACAATGATAAGTACACAA 57.554 32.000 0.00 0.00 0.00 3.33
271 272 7.628769 ATGATGCAACAATGATAAGTACACA 57.371 32.000 0.00 0.00 0.00 3.72
276 277 9.578576 AACCTATATGATGCAACAATGATAAGT 57.421 29.630 0.00 0.00 0.00 2.24
277 278 9.836076 CAACCTATATGATGCAACAATGATAAG 57.164 33.333 0.00 0.00 0.00 1.73
278 279 8.298854 GCAACCTATATGATGCAACAATGATAA 58.701 33.333 0.00 0.00 38.63 1.75
279 280 7.666804 AGCAACCTATATGATGCAACAATGATA 59.333 33.333 11.71 0.00 41.18 2.15
280 281 6.492429 AGCAACCTATATGATGCAACAATGAT 59.508 34.615 11.71 0.00 41.18 2.45
281 282 5.829391 AGCAACCTATATGATGCAACAATGA 59.171 36.000 11.71 0.00 41.18 2.57
282 283 6.080648 AGCAACCTATATGATGCAACAATG 57.919 37.500 11.71 0.00 41.18 2.82
283 284 5.829391 TGAGCAACCTATATGATGCAACAAT 59.171 36.000 11.71 0.00 41.18 2.71
284 285 5.066375 GTGAGCAACCTATATGATGCAACAA 59.934 40.000 11.71 0.00 41.18 2.83
285 286 4.576053 GTGAGCAACCTATATGATGCAACA 59.424 41.667 11.71 0.00 41.18 3.33
286 287 4.818546 AGTGAGCAACCTATATGATGCAAC 59.181 41.667 11.71 9.39 41.18 4.17
287 288 5.039920 AGTGAGCAACCTATATGATGCAA 57.960 39.130 11.71 0.00 41.18 4.08
288 289 4.694760 AGTGAGCAACCTATATGATGCA 57.305 40.909 11.71 0.00 41.18 3.96
289 290 6.226787 ACTAAGTGAGCAACCTATATGATGC 58.773 40.000 2.62 2.62 39.06 3.91
290 291 7.307632 GCAACTAAGTGAGCAACCTATATGATG 60.308 40.741 0.00 0.00 0.00 3.07
291 292 6.708054 GCAACTAAGTGAGCAACCTATATGAT 59.292 38.462 0.00 0.00 0.00 2.45
292 293 6.049149 GCAACTAAGTGAGCAACCTATATGA 58.951 40.000 0.00 0.00 0.00 2.15
293 294 5.817296 TGCAACTAAGTGAGCAACCTATATG 59.183 40.000 0.00 0.00 33.48 1.78
294 295 5.989477 TGCAACTAAGTGAGCAACCTATAT 58.011 37.500 0.00 0.00 33.48 0.86
295 296 5.414789 TGCAACTAAGTGAGCAACCTATA 57.585 39.130 0.00 0.00 33.48 1.31
296 297 4.286297 TGCAACTAAGTGAGCAACCTAT 57.714 40.909 0.00 0.00 33.48 2.57
297 298 3.762407 TGCAACTAAGTGAGCAACCTA 57.238 42.857 0.00 0.00 33.48 3.08
298 299 2.638480 TGCAACTAAGTGAGCAACCT 57.362 45.000 0.00 0.00 33.48 3.50
299 300 4.878397 AGATATGCAACTAAGTGAGCAACC 59.122 41.667 0.00 0.00 40.76 3.77
300 301 7.539712 TTAGATATGCAACTAAGTGAGCAAC 57.460 36.000 0.00 0.00 40.76 4.17
301 302 7.606073 TGTTTAGATATGCAACTAAGTGAGCAA 59.394 33.333 0.00 0.00 40.76 3.91
302 303 7.102993 TGTTTAGATATGCAACTAAGTGAGCA 58.897 34.615 0.00 0.00 41.73 4.26
303 304 7.539712 TGTTTAGATATGCAACTAAGTGAGC 57.460 36.000 0.00 0.00 31.66 4.26
304 305 8.391106 GGTTGTTTAGATATGCAACTAAGTGAG 58.609 37.037 0.00 0.00 40.49 3.51
305 306 8.100791 AGGTTGTTTAGATATGCAACTAAGTGA 58.899 33.333 0.00 0.00 40.49 3.41
306 307 8.268850 AGGTTGTTTAGATATGCAACTAAGTG 57.731 34.615 0.00 0.00 40.49 3.16
307 308 9.953565 TTAGGTTGTTTAGATATGCAACTAAGT 57.046 29.630 0.00 0.00 40.49 2.24
315 316 9.185192 GCATCAAATTAGGTTGTTTAGATATGC 57.815 33.333 0.00 0.00 0.00 3.14
319 320 9.643693 CTTTGCATCAAATTAGGTTGTTTAGAT 57.356 29.630 0.00 0.00 32.70 1.98
320 321 8.637986 ACTTTGCATCAAATTAGGTTGTTTAGA 58.362 29.630 0.00 0.00 32.70 2.10
321 322 8.816640 ACTTTGCATCAAATTAGGTTGTTTAG 57.183 30.769 0.00 0.00 32.70 1.85
322 323 9.606631 AAACTTTGCATCAAATTAGGTTGTTTA 57.393 25.926 0.00 0.00 32.70 2.01
323 324 8.504812 AAACTTTGCATCAAATTAGGTTGTTT 57.495 26.923 0.00 0.00 32.70 2.83
324 325 9.606631 TTAAACTTTGCATCAAATTAGGTTGTT 57.393 25.926 0.00 0.00 32.70 2.83
325 326 9.606631 TTTAAACTTTGCATCAAATTAGGTTGT 57.393 25.926 0.00 0.00 32.70 3.32
394 395 5.954153 TCGATATAGTAGACTAGAGGGGG 57.046 47.826 0.00 0.00 0.00 5.40
395 396 6.328148 AGGATCGATATAGTAGACTAGAGGGG 59.672 46.154 0.00 0.00 0.00 4.79
396 397 7.369551 AGGATCGATATAGTAGACTAGAGGG 57.630 44.000 0.00 0.00 0.00 4.30
397 398 9.321562 GAAAGGATCGATATAGTAGACTAGAGG 57.678 40.741 0.00 0.00 0.00 3.69
398 399 9.878667 TGAAAGGATCGATATAGTAGACTAGAG 57.121 37.037 0.00 0.00 0.00 2.43
399 400 9.656040 GTGAAAGGATCGATATAGTAGACTAGA 57.344 37.037 0.00 0.00 0.00 2.43
400 401 8.885722 GGTGAAAGGATCGATATAGTAGACTAG 58.114 40.741 0.00 0.00 0.00 2.57
401 402 8.380867 TGGTGAAAGGATCGATATAGTAGACTA 58.619 37.037 0.00 0.00 0.00 2.59
402 403 7.232188 TGGTGAAAGGATCGATATAGTAGACT 58.768 38.462 0.00 0.00 0.00 3.24
403 404 7.175293 ACTGGTGAAAGGATCGATATAGTAGAC 59.825 40.741 0.00 0.00 0.00 2.59
404 405 7.232188 ACTGGTGAAAGGATCGATATAGTAGA 58.768 38.462 0.00 0.00 0.00 2.59
405 406 7.455641 ACTGGTGAAAGGATCGATATAGTAG 57.544 40.000 0.00 0.00 0.00 2.57
406 407 8.162085 ACTACTGGTGAAAGGATCGATATAGTA 58.838 37.037 0.00 0.00 0.00 1.82
407 408 7.005296 ACTACTGGTGAAAGGATCGATATAGT 58.995 38.462 0.00 0.00 0.00 2.12
408 409 7.455641 ACTACTGGTGAAAGGATCGATATAG 57.544 40.000 0.00 0.00 0.00 1.31
470 492 5.336849 CCTTTACTGCTACTAGCTTGAGTGT 60.337 44.000 9.49 0.00 42.97 3.55
483 505 4.634012 TCCTTCTTTGCCTTTACTGCTA 57.366 40.909 0.00 0.00 0.00 3.49
489 511 4.291249 ACCTACCATCCTTCTTTGCCTTTA 59.709 41.667 0.00 0.00 0.00 1.85
613 635 0.449786 CAACGGTGTTCAAGTGCACA 59.550 50.000 21.04 0.00 37.35 4.57
726 748 2.495270 CTGCTAAGGTCTCTCAGCTTGA 59.505 50.000 0.00 0.00 42.99 3.02
789 811 3.524606 GGCCGGCGTAGTGCTCTA 61.525 66.667 22.54 0.00 45.43 2.43
839 861 0.392998 GGCAGTGGTGGACAGTATGG 60.393 60.000 0.00 0.00 43.62 2.74
854 876 2.101582 AGTTGCGATTAGGAGTAGGCAG 59.898 50.000 0.00 0.00 0.00 4.85
1008 1030 0.912006 GAGAACCAAGAGGCTCCCCT 60.912 60.000 11.71 0.00 46.74 4.79
1113 1137 1.413077 CTCTTCCTATCAACGGGGTCC 59.587 57.143 0.00 0.00 0.00 4.46
1190 1217 1.150536 GTTGCCACCTCCTTCACCA 59.849 57.895 0.00 0.00 0.00 4.17
1224 1251 2.036098 TGGACGTCGAGGGGCTTA 59.964 61.111 9.92 0.00 0.00 3.09
1261 1288 1.852157 AGCCACCCTGGGTCATGAA 60.852 57.895 17.46 0.00 46.99 2.57
1285 1312 1.220206 CTGCCATGAGAGCCTCGTT 59.780 57.895 0.00 0.00 32.35 3.85
1690 1722 6.215121 CACACAAATAACAATGGAGCAGAAA 58.785 36.000 0.00 0.00 0.00 2.52
1716 1748 2.689983 AGCACAAGTAGCAAGCAAAGTT 59.310 40.909 0.00 0.00 0.00 2.66
1817 1849 6.652205 TTCTTCCCATGAACTATAAACCCT 57.348 37.500 0.00 0.00 0.00 4.34
1853 1885 3.143728 TGCTGTTGCTATATGATGCCAG 58.856 45.455 0.00 0.00 40.48 4.85
1877 1909 5.104735 CCTGCTTAGTCTTGAACCCTCTATT 60.105 44.000 0.00 0.00 0.00 1.73
1960 1992 0.324943 TGACAGCTCTAACCTTGGCC 59.675 55.000 0.00 0.00 0.00 5.36
1970 2002 1.419387 AGCTTCCACTTTGACAGCTCT 59.581 47.619 0.00 0.00 35.95 4.09
2108 2141 3.870274 CTTACCTTGTACCCTAGTTGGC 58.130 50.000 0.00 0.00 0.00 4.52
2190 2223 4.470334 AAGTGCACTTTGTTTGGTTGAT 57.530 36.364 26.36 0.00 30.82 2.57
2191 2224 3.951775 AAGTGCACTTTGTTTGGTTGA 57.048 38.095 26.36 0.00 30.82 3.18
2212 2245 6.493802 CCTAGTCCCTGCATCTAGTAATACAA 59.506 42.308 0.00 0.00 32.01 2.41
2213 2246 6.010850 CCTAGTCCCTGCATCTAGTAATACA 58.989 44.000 0.00 0.00 32.01 2.29
2221 2254 2.894731 CATCCCTAGTCCCTGCATCTA 58.105 52.381 0.00 0.00 0.00 1.98
2222 2255 1.727062 CATCCCTAGTCCCTGCATCT 58.273 55.000 0.00 0.00 0.00 2.90
2223 2256 0.036022 GCATCCCTAGTCCCTGCATC 59.964 60.000 0.00 0.00 33.13 3.91
2356 2389 4.502604 GCATGCAGCCAAGGAAATCATTAT 60.503 41.667 14.21 0.00 37.23 1.28
2364 2397 0.612453 TCATGCATGCAGCCAAGGAA 60.612 50.000 26.69 0.00 44.83 3.36
2365 2398 0.612453 TTCATGCATGCAGCCAAGGA 60.612 50.000 26.69 12.75 44.83 3.36
2366 2399 0.248012 TTTCATGCATGCAGCCAAGG 59.752 50.000 26.69 10.69 44.83 3.61
2367 2400 2.309528 ATTTCATGCATGCAGCCAAG 57.690 45.000 26.69 12.74 44.83 3.61
2368 2401 2.028020 TGAATTTCATGCATGCAGCCAA 60.028 40.909 26.69 17.26 44.83 4.52
2369 2402 1.550976 TGAATTTCATGCATGCAGCCA 59.449 42.857 26.69 9.23 44.83 4.75
2370 2403 2.303163 TGAATTTCATGCATGCAGCC 57.697 45.000 26.69 9.86 44.83 4.85
2371 2404 4.866921 TCTATGAATTTCATGCATGCAGC 58.133 39.130 26.69 9.43 37.70 5.25
2372 2405 7.946655 AAATCTATGAATTTCATGCATGCAG 57.053 32.000 26.69 17.32 37.70 4.41
2373 2406 8.725405 AAAAATCTATGAATTTCATGCATGCA 57.275 26.923 25.04 25.04 37.70 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.