Multiple sequence alignment - TraesCS7A01G450700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G450700 chr7A 100.000 4155 0 0 1 4155 644131467 644135621 0.000000e+00 7673.0
1 TraesCS7A01G450700 chr7A 100.000 48 0 0 3938 3985 644135356 644135403 5.720000e-14 89.8
2 TraesCS7A01G450700 chr7A 100.000 48 0 0 3890 3937 644135404 644135451 5.720000e-14 89.8
3 TraesCS7A01G450700 chr7B 89.029 1978 112 46 834 2756 607641951 607643878 0.000000e+00 2353.0
4 TraesCS7A01G450700 chr7B 82.388 829 124 14 3125 3932 607650813 607651640 0.000000e+00 702.0
5 TraesCS7A01G450700 chr7B 79.144 561 88 15 1 540 59717036 59717588 1.100000e-95 361.0
6 TraesCS7A01G450700 chr7B 79.582 431 66 14 129 540 212031381 212030954 5.260000e-74 289.0
7 TraesCS7A01G450700 chr7B 80.000 220 32 10 313 530 677333774 677333983 7.190000e-33 152.0
8 TraesCS7A01G450700 chr7B 79.279 222 35 8 3940 4155 442572343 442572559 1.200000e-30 145.0
9 TraesCS7A01G450700 chr7B 84.762 105 16 0 2979 3083 607650655 607650551 5.680000e-19 106.0
10 TraesCS7A01G450700 chr7D 90.733 1187 67 11 2775 3934 559460553 559461723 0.000000e+00 1543.0
11 TraesCS7A01G450700 chr7D 91.963 983 45 11 1796 2771 559459498 559460453 0.000000e+00 1347.0
12 TraesCS7A01G450700 chr7D 90.735 626 27 14 1096 1691 559458838 559459462 0.000000e+00 806.0
13 TraesCS7A01G450700 chr7D 91.111 225 10 5 3938 4155 559461678 559461899 3.140000e-76 296.0
14 TraesCS7A01G450700 chr7D 79.741 232 27 9 850 1075 559458632 559458849 2.590000e-32 150.0
15 TraesCS7A01G450700 chr7D 88.462 52 6 0 3447 3498 80279725 80279776 3.470000e-06 63.9
16 TraesCS7A01G450700 chr6B 82.258 558 78 11 2 540 45525942 45526497 2.930000e-126 462.0
17 TraesCS7A01G450700 chr6B 77.963 481 59 20 10 452 183722766 183722295 1.480000e-64 257.0
18 TraesCS7A01G450700 chr5D 82.554 556 64 16 2 540 423529015 423529554 3.790000e-125 459.0
19 TraesCS7A01G450700 chr5D 77.202 193 31 11 2986 3166 298471373 298471564 2.640000e-17 100.0
20 TraesCS7A01G450700 chr5D 79.832 119 21 3 4012 4130 199897339 199897454 2.660000e-12 84.2
21 TraesCS7A01G450700 chr5D 91.489 47 3 1 3466 3512 487269684 487269729 3.470000e-06 63.9
22 TraesCS7A01G450700 chr4D 82.042 568 64 14 1 540 509522805 509522248 2.280000e-122 449.0
23 TraesCS7A01G450700 chr4D 77.419 310 50 16 3634 3932 394862035 394862335 2.570000e-37 167.0
24 TraesCS7A01G450700 chr1D 80.903 576 69 17 1 540 401018578 401019148 2.310000e-112 416.0
25 TraesCS7A01G450700 chr1D 82.515 326 44 6 2 315 248205027 248204703 1.470000e-69 274.0
26 TraesCS7A01G450700 chr1D 85.075 134 20 0 2976 3109 447521941 447522074 2.010000e-28 137.0
27 TraesCS7A01G450700 chr2D 80.565 566 74 14 1 540 183615019 183615574 1.800000e-108 403.0
28 TraesCS7A01G450700 chr2D 79.206 529 60 19 1 482 537509054 537508529 5.180000e-84 322.0
29 TraesCS7A01G450700 chr2D 77.087 563 68 21 3 540 261976049 261976575 6.850000e-68 268.0
30 TraesCS7A01G450700 chr2D 82.946 129 22 0 2980 3108 547602336 547602464 2.620000e-22 117.0
31 TraesCS7A01G450700 chr2D 85.915 71 10 0 3466 3536 14108399 14108469 4.450000e-10 76.8
32 TraesCS7A01G450700 chr3A 82.474 485 58 11 1 467 688976112 688976587 2.330000e-107 399.0
33 TraesCS7A01G450700 chr5A 81.165 515 63 15 1 490 412909596 412909091 2.340000e-102 383.0
34 TraesCS7A01G450700 chr5A 79.787 282 45 7 3644 3917 575543094 575543371 1.180000e-45 195.0
35 TraesCS7A01G450700 chr2A 79.823 451 64 13 1 437 59363269 59363706 1.880000e-78 303.0
36 TraesCS7A01G450700 chr2A 88.732 71 8 0 3466 3536 16480074 16480144 2.060000e-13 87.9
37 TraesCS7A01G450700 chr2A 86.567 67 8 1 3428 3493 185707576 185707642 5.760000e-09 73.1
38 TraesCS7A01G450700 chr1B 76.232 568 93 22 1 536 43506478 43507035 3.190000e-66 263.0
39 TraesCS7A01G450700 chr6A 81.789 313 45 5 1 301 99024631 99024319 6.900000e-63 252.0
40 TraesCS7A01G450700 chr6A 83.871 93 15 0 3444 3536 604584234 604584142 5.720000e-14 89.8
41 TraesCS7A01G450700 chr5B 80.163 368 46 10 192 540 470601672 470602031 2.480000e-62 250.0
42 TraesCS7A01G450700 chr5B 84.559 136 21 0 2986 3121 290813517 290813652 7.250000e-28 135.0
43 TraesCS7A01G450700 chr6D 82.008 239 18 13 3940 4155 429657202 429656966 3.300000e-41 180.0
44 TraesCS7A01G450700 chr6D 84.058 69 8 2 4088 4155 448569026 448568960 3.470000e-06 63.9
45 TraesCS7A01G450700 chr3D 82.447 188 26 6 3660 3844 443256380 443256197 1.550000e-34 158.0
46 TraesCS7A01G450700 chr3D 84.375 64 10 0 3466 3529 568428279 568428216 3.470000e-06 63.9
47 TraesCS7A01G450700 chr2B 84.375 128 20 0 2980 3107 653841154 653841281 4.360000e-25 126.0
48 TraesCS7A01G450700 chr1A 83.206 131 22 0 2979 3109 543505067 543505197 2.030000e-23 121.0
49 TraesCS7A01G450700 chr3B 80.769 130 25 0 2980 3109 766324470 766324599 7.350000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G450700 chr7A 644131467 644135621 4154 False 2617.533333 7673 100.0000 1 4155 3 chr7A.!!$F1 4154
1 TraesCS7A01G450700 chr7B 607641951 607643878 1927 False 2353.000000 2353 89.0290 834 2756 1 chr7B.!!$F3 1922
2 TraesCS7A01G450700 chr7B 607650813 607651640 827 False 702.000000 702 82.3880 3125 3932 1 chr7B.!!$F4 807
3 TraesCS7A01G450700 chr7B 59717036 59717588 552 False 361.000000 361 79.1440 1 540 1 chr7B.!!$F1 539
4 TraesCS7A01G450700 chr7D 559458632 559461899 3267 False 828.400000 1543 88.8566 850 4155 5 chr7D.!!$F2 3305
5 TraesCS7A01G450700 chr6B 45525942 45526497 555 False 462.000000 462 82.2580 2 540 1 chr6B.!!$F1 538
6 TraesCS7A01G450700 chr5D 423529015 423529554 539 False 459.000000 459 82.5540 2 540 1 chr5D.!!$F3 538
7 TraesCS7A01G450700 chr4D 509522248 509522805 557 True 449.000000 449 82.0420 1 540 1 chr4D.!!$R1 539
8 TraesCS7A01G450700 chr1D 401018578 401019148 570 False 416.000000 416 80.9030 1 540 1 chr1D.!!$F1 539
9 TraesCS7A01G450700 chr2D 183615019 183615574 555 False 403.000000 403 80.5650 1 540 1 chr2D.!!$F2 539
10 TraesCS7A01G450700 chr2D 537508529 537509054 525 True 322.000000 322 79.2060 1 482 1 chr2D.!!$R1 481
11 TraesCS7A01G450700 chr2D 261976049 261976575 526 False 268.000000 268 77.0870 3 540 1 chr2D.!!$F3 537
12 TraesCS7A01G450700 chr5A 412909091 412909596 505 True 383.000000 383 81.1650 1 490 1 chr5A.!!$R1 489
13 TraesCS7A01G450700 chr1B 43506478 43507035 557 False 263.000000 263 76.2320 1 536 1 chr1B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 729 0.034756 CCAACATCACGTCACCAGGA 59.965 55.0 0.0 0.0 0.00 3.86 F
726 850 0.178932 TGAGTGGGTGAGGCAGTAGT 60.179 55.0 0.0 0.0 0.00 2.73 F
1005 1143 0.247736 AGCTTAGCTGTCTTCCCGTG 59.752 55.0 5.7 0.0 37.57 4.94 F
1018 1156 0.324614 TCCCGTGAATGTGCTGATGT 59.675 50.0 0.0 0.0 0.00 3.06 F
2579 2773 0.036858 GGTCTGGTCTCAGGTGAAGC 60.037 60.0 0.0 0.0 41.23 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1982 0.171679 TACACGTGGTCACCATAGCG 59.828 55.0 21.57 0.78 35.28 4.26 R
2261 2454 0.249911 AAGAACCCTCGTGTCAGTGC 60.250 55.0 0.00 0.00 0.00 4.40 R
2263 2456 0.249911 GCAAGAACCCTCGTGTCAGT 60.250 55.0 0.00 0.00 33.96 3.41 R
2826 3119 0.949105 CGCCGGTGTGTAAAAGCTCT 60.949 55.0 6.91 0.00 0.00 4.09 R
3915 4254 0.038159 CGGTGCGGTTCTCTTCTTCT 60.038 55.0 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.259356 CCCCTCTCCTCGTTCCTACT 59.741 60.000 0.00 0.00 0.00 2.57
79 86 1.555075 GTGAAGGAGCACCAGGACATA 59.445 52.381 2.07 0.00 38.94 2.29
81 88 2.111384 GAAGGAGCACCAGGACATAGA 58.889 52.381 2.07 0.00 38.94 1.98
178 188 2.150424 CGAAATCGTTGCTCGGTGT 58.850 52.632 0.00 0.00 40.32 4.16
221 231 2.667199 TCGTCCTCGACAGCGACA 60.667 61.111 0.00 0.00 42.51 4.35
238 248 1.296392 CAACGAGGATGTGCCCAGA 59.704 57.895 0.00 0.00 37.37 3.86
240 250 1.480212 AACGAGGATGTGCCCAGACA 61.480 55.000 0.00 0.00 37.37 3.41
242 256 1.021390 CGAGGATGTGCCCAGACAAC 61.021 60.000 0.00 0.00 37.37 3.32
333 408 2.541178 CGACTACACCCGATTCTACAGC 60.541 54.545 0.00 0.00 0.00 4.40
354 429 2.060980 CCTCGGCAGGTAGAAGGCT 61.061 63.158 0.00 0.00 34.60 4.58
409 507 6.408858 TTTGTGTTTTCATTTGCGCTTTTA 57.591 29.167 9.73 0.00 0.00 1.52
501 624 7.416154 AAAACGACATCTAAAAACGATCTCA 57.584 32.000 0.00 0.00 0.00 3.27
553 677 0.109132 CCAAGAACGGCTGGAAATGC 60.109 55.000 0.00 0.00 0.00 3.56
554 678 0.883833 CAAGAACGGCTGGAAATGCT 59.116 50.000 0.00 0.00 0.00 3.79
555 679 1.135575 CAAGAACGGCTGGAAATGCTC 60.136 52.381 0.00 0.00 0.00 4.26
556 680 0.326264 AGAACGGCTGGAAATGCTCT 59.674 50.000 0.00 0.00 0.00 4.09
557 681 0.449388 GAACGGCTGGAAATGCTCTG 59.551 55.000 0.00 0.00 0.00 3.35
558 682 0.036732 AACGGCTGGAAATGCTCTGA 59.963 50.000 0.00 0.00 0.00 3.27
559 683 0.036732 ACGGCTGGAAATGCTCTGAA 59.963 50.000 0.00 0.00 0.00 3.02
560 684 1.340405 ACGGCTGGAAATGCTCTGAAT 60.340 47.619 0.00 0.00 0.00 2.57
561 685 1.332997 CGGCTGGAAATGCTCTGAATC 59.667 52.381 0.00 0.00 0.00 2.52
562 686 1.680207 GGCTGGAAATGCTCTGAATCC 59.320 52.381 0.00 0.00 0.00 3.01
563 687 2.372264 GCTGGAAATGCTCTGAATCCA 58.628 47.619 0.00 0.00 37.83 3.41
566 690 3.614092 TGGAAATGCTCTGAATCCAGAC 58.386 45.455 0.00 0.00 44.01 3.51
567 691 2.611292 GGAAATGCTCTGAATCCAGACG 59.389 50.000 0.00 0.00 44.01 4.18
568 692 1.661341 AATGCTCTGAATCCAGACGC 58.339 50.000 0.00 0.00 44.01 5.19
569 693 0.529337 ATGCTCTGAATCCAGACGCG 60.529 55.000 3.53 3.53 44.01 6.01
570 694 1.880340 GCTCTGAATCCAGACGCGG 60.880 63.158 12.47 0.00 44.01 6.46
571 695 1.809869 CTCTGAATCCAGACGCGGA 59.190 57.895 12.47 0.00 44.01 5.54
573 697 0.385751 TCTGAATCCAGACGCGGATC 59.614 55.000 12.47 0.00 45.39 3.36
574 698 0.936764 CTGAATCCAGACGCGGATCG 60.937 60.000 12.47 0.00 45.39 3.69
575 699 2.279517 AATCCAGACGCGGATCGC 60.280 61.111 12.47 1.86 45.39 4.58
592 716 2.668212 CGTGGACCGCACCAACAT 60.668 61.111 5.75 0.00 41.87 2.71
593 717 2.677003 CGTGGACCGCACCAACATC 61.677 63.158 5.75 0.00 41.87 3.06
594 718 1.599518 GTGGACCGCACCAACATCA 60.600 57.895 0.00 0.00 41.87 3.07
595 719 1.599518 TGGACCGCACCAACATCAC 60.600 57.895 0.00 0.00 36.96 3.06
596 720 2.677003 GGACCGCACCAACATCACG 61.677 63.158 0.00 0.00 0.00 4.35
597 721 1.959226 GACCGCACCAACATCACGT 60.959 57.895 0.00 0.00 0.00 4.49
598 722 1.897398 GACCGCACCAACATCACGTC 61.897 60.000 0.00 0.00 0.00 4.34
599 723 1.958715 CCGCACCAACATCACGTCA 60.959 57.895 0.00 0.00 0.00 4.35
600 724 1.204062 CGCACCAACATCACGTCAC 59.796 57.895 0.00 0.00 0.00 3.67
601 725 1.574428 GCACCAACATCACGTCACC 59.426 57.895 0.00 0.00 0.00 4.02
602 726 1.163420 GCACCAACATCACGTCACCA 61.163 55.000 0.00 0.00 0.00 4.17
603 727 0.867746 CACCAACATCACGTCACCAG 59.132 55.000 0.00 0.00 0.00 4.00
604 728 0.250295 ACCAACATCACGTCACCAGG 60.250 55.000 0.00 0.00 0.00 4.45
605 729 0.034756 CCAACATCACGTCACCAGGA 59.965 55.000 0.00 0.00 0.00 3.86
606 730 1.432514 CAACATCACGTCACCAGGAG 58.567 55.000 0.00 0.00 0.00 3.69
607 731 0.321671 AACATCACGTCACCAGGAGG 59.678 55.000 0.00 0.00 42.21 4.30
617 741 3.713650 CCAGGAGGTCGGTGTCAT 58.286 61.111 0.00 0.00 0.00 3.06
618 742 2.896278 CCAGGAGGTCGGTGTCATA 58.104 57.895 0.00 0.00 0.00 2.15
619 743 1.414158 CCAGGAGGTCGGTGTCATAT 58.586 55.000 0.00 0.00 0.00 1.78
620 744 1.341531 CCAGGAGGTCGGTGTCATATC 59.658 57.143 0.00 0.00 0.00 1.63
621 745 1.001268 CAGGAGGTCGGTGTCATATCG 60.001 57.143 0.00 0.00 0.00 2.92
622 746 1.133884 AGGAGGTCGGTGTCATATCGA 60.134 52.381 0.00 0.00 40.19 3.59
629 753 2.349297 GGTGTCATATCGACCGATCC 57.651 55.000 8.28 0.00 44.71 3.36
630 754 1.401148 GGTGTCATATCGACCGATCCG 60.401 57.143 8.28 1.87 44.71 4.18
631 755 0.240145 TGTCATATCGACCGATCCGC 59.760 55.000 8.28 0.00 44.71 5.54
632 756 0.793478 GTCATATCGACCGATCCGCG 60.793 60.000 8.28 0.00 38.85 6.46
633 757 2.152699 CATATCGACCGATCCGCGC 61.153 63.158 8.28 0.00 39.11 6.86
634 758 3.338126 ATATCGACCGATCCGCGCC 62.338 63.158 8.28 0.00 39.11 6.53
651 775 4.047125 CCGGAGCACCCAACCCAT 62.047 66.667 0.00 0.00 34.14 4.00
652 776 2.035626 CGGAGCACCCAACCCATT 59.964 61.111 0.00 0.00 34.14 3.16
653 777 1.606313 CGGAGCACCCAACCCATTT 60.606 57.895 0.00 0.00 34.14 2.32
654 778 1.595093 CGGAGCACCCAACCCATTTC 61.595 60.000 0.00 0.00 34.14 2.17
655 779 1.595093 GGAGCACCCAACCCATTTCG 61.595 60.000 0.00 0.00 34.14 3.46
656 780 1.595093 GAGCACCCAACCCATTTCGG 61.595 60.000 0.00 0.00 0.00 4.30
657 781 2.969827 CACCCAACCCATTTCGGC 59.030 61.111 0.00 0.00 0.00 5.54
658 782 2.675075 ACCCAACCCATTTCGGCG 60.675 61.111 0.00 0.00 0.00 6.46
659 783 4.128388 CCCAACCCATTTCGGCGC 62.128 66.667 0.00 0.00 0.00 6.53
660 784 3.061848 CCAACCCATTTCGGCGCT 61.062 61.111 7.64 0.00 0.00 5.92
661 785 2.485122 CAACCCATTTCGGCGCTC 59.515 61.111 7.64 0.00 0.00 5.03
662 786 2.040544 CAACCCATTTCGGCGCTCT 61.041 57.895 7.64 0.00 0.00 4.09
663 787 1.745489 AACCCATTTCGGCGCTCTC 60.745 57.895 7.64 0.00 0.00 3.20
664 788 3.264897 CCCATTTCGGCGCTCTCG 61.265 66.667 7.64 1.98 39.07 4.04
675 799 3.491652 GCTCTCGCTTTGCCGGAC 61.492 66.667 5.05 0.00 0.00 4.79
676 800 3.181967 CTCTCGCTTTGCCGGACG 61.182 66.667 5.05 0.00 0.00 4.79
677 801 3.626680 CTCTCGCTTTGCCGGACGA 62.627 63.158 5.05 4.60 0.00 4.20
678 802 2.736995 CTCGCTTTGCCGGACGAA 60.737 61.111 5.05 1.52 33.61 3.85
679 803 3.011760 CTCGCTTTGCCGGACGAAC 62.012 63.158 5.05 0.00 33.61 3.95
680 804 4.424430 CGCTTTGCCGGACGAACG 62.424 66.667 5.05 0.00 0.00 3.95
689 813 4.754667 GGACGAACGGCTCCACCC 62.755 72.222 0.00 0.00 33.26 4.61
690 814 3.692406 GACGAACGGCTCCACCCT 61.692 66.667 0.00 0.00 33.26 4.34
691 815 3.934391 GACGAACGGCTCCACCCTG 62.934 68.421 0.00 0.00 33.26 4.45
692 816 4.760047 CGAACGGCTCCACCCTGG 62.760 72.222 0.00 0.00 39.43 4.45
693 817 3.637273 GAACGGCTCCACCCTGGT 61.637 66.667 0.00 0.00 39.03 4.00
694 818 3.901797 GAACGGCTCCACCCTGGTG 62.902 68.421 9.42 9.42 45.02 4.17
717 841 4.314440 GCTGCGGTGAGTGGGTGA 62.314 66.667 0.00 0.00 0.00 4.02
718 842 2.047844 CTGCGGTGAGTGGGTGAG 60.048 66.667 0.00 0.00 0.00 3.51
719 843 3.596066 CTGCGGTGAGTGGGTGAGG 62.596 68.421 0.00 0.00 0.00 3.86
721 845 3.625897 CGGTGAGTGGGTGAGGCA 61.626 66.667 0.00 0.00 0.00 4.75
722 846 2.348998 GGTGAGTGGGTGAGGCAG 59.651 66.667 0.00 0.00 0.00 4.85
723 847 2.520536 GGTGAGTGGGTGAGGCAGT 61.521 63.158 0.00 0.00 0.00 4.40
724 848 1.192146 GGTGAGTGGGTGAGGCAGTA 61.192 60.000 0.00 0.00 0.00 2.74
725 849 0.247736 GTGAGTGGGTGAGGCAGTAG 59.752 60.000 0.00 0.00 0.00 2.57
726 850 0.178932 TGAGTGGGTGAGGCAGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
727 851 1.076513 TGAGTGGGTGAGGCAGTAGTA 59.923 52.381 0.00 0.00 0.00 1.82
728 852 1.751924 GAGTGGGTGAGGCAGTAGTAG 59.248 57.143 0.00 0.00 0.00 2.57
729 853 1.077334 AGTGGGTGAGGCAGTAGTAGT 59.923 52.381 0.00 0.00 0.00 2.73
730 854 2.310945 AGTGGGTGAGGCAGTAGTAGTA 59.689 50.000 0.00 0.00 0.00 1.82
731 855 3.052793 AGTGGGTGAGGCAGTAGTAGTAT 60.053 47.826 0.00 0.00 0.00 2.12
732 856 3.318557 GTGGGTGAGGCAGTAGTAGTATC 59.681 52.174 0.00 0.00 0.00 2.24
733 857 3.204606 TGGGTGAGGCAGTAGTAGTATCT 59.795 47.826 0.00 0.00 0.00 1.98
734 858 3.822167 GGGTGAGGCAGTAGTAGTATCTC 59.178 52.174 0.00 0.00 0.00 2.75
735 859 4.462133 GGTGAGGCAGTAGTAGTATCTCA 58.538 47.826 5.73 5.73 0.00 3.27
736 860 4.517453 GGTGAGGCAGTAGTAGTATCTCAG 59.483 50.000 8.76 0.00 31.57 3.35
737 861 4.517453 GTGAGGCAGTAGTAGTATCTCAGG 59.483 50.000 8.76 0.00 31.57 3.86
738 862 4.412528 TGAGGCAGTAGTAGTATCTCAGGA 59.587 45.833 5.73 0.00 0.00 3.86
739 863 4.980573 AGGCAGTAGTAGTATCTCAGGAG 58.019 47.826 0.00 0.00 0.00 3.69
740 864 4.076394 GGCAGTAGTAGTATCTCAGGAGG 58.924 52.174 0.00 0.00 0.00 4.30
741 865 4.446600 GGCAGTAGTAGTATCTCAGGAGGT 60.447 50.000 0.00 0.00 0.00 3.85
742 866 4.758165 GCAGTAGTAGTATCTCAGGAGGTC 59.242 50.000 0.00 0.00 0.00 3.85
743 867 5.455612 GCAGTAGTAGTATCTCAGGAGGTCT 60.456 48.000 0.00 0.00 0.00 3.85
744 868 5.995282 CAGTAGTAGTATCTCAGGAGGTCTG 59.005 48.000 0.00 0.00 44.68 3.51
745 869 3.827722 AGTAGTATCTCAGGAGGTCTGC 58.172 50.000 0.00 0.00 43.06 4.26
746 870 2.836636 AGTATCTCAGGAGGTCTGCA 57.163 50.000 0.00 0.00 43.06 4.41
747 871 2.383855 AGTATCTCAGGAGGTCTGCAC 58.616 52.381 0.00 0.00 43.06 4.57
748 872 1.066303 GTATCTCAGGAGGTCTGCACG 59.934 57.143 0.00 0.00 43.06 5.34
749 873 0.613292 ATCTCAGGAGGTCTGCACGT 60.613 55.000 0.00 0.00 43.06 4.49
750 874 1.080230 CTCAGGAGGTCTGCACGTG 60.080 63.158 12.28 12.28 43.06 4.49
751 875 2.047844 CAGGAGGTCTGCACGTGG 60.048 66.667 18.88 0.92 36.60 4.94
752 876 2.203640 AGGAGGTCTGCACGTGGA 60.204 61.111 18.88 14.63 0.00 4.02
753 877 2.048127 GGAGGTCTGCACGTGGAC 60.048 66.667 18.88 16.28 0.00 4.02
754 878 2.574955 GGAGGTCTGCACGTGGACT 61.575 63.158 18.88 8.13 33.46 3.85
755 879 1.367840 GAGGTCTGCACGTGGACTT 59.632 57.895 18.88 13.20 33.46 3.01
756 880 0.946221 GAGGTCTGCACGTGGACTTG 60.946 60.000 18.88 2.73 33.46 3.16
757 881 2.607892 GGTCTGCACGTGGACTTGC 61.608 63.158 18.88 1.49 40.95 4.01
758 882 1.887242 GTCTGCACGTGGACTTGCA 60.887 57.895 18.88 10.19 46.68 4.08
759 883 1.887242 TCTGCACGTGGACTTGCAC 60.887 57.895 18.88 0.00 44.53 4.57
760 884 1.889105 CTGCACGTGGACTTGCACT 60.889 57.895 18.88 0.00 44.53 4.40
761 885 1.439353 CTGCACGTGGACTTGCACTT 61.439 55.000 18.88 0.00 44.53 3.16
762 886 1.009675 GCACGTGGACTTGCACTTG 60.010 57.895 18.88 3.38 40.37 3.16
763 887 1.009675 CACGTGGACTTGCACTTGC 60.010 57.895 7.95 0.00 42.50 4.01
764 888 2.249309 CGTGGACTTGCACTTGCG 59.751 61.111 0.00 0.00 45.83 4.85
765 889 2.534019 CGTGGACTTGCACTTGCGT 61.534 57.895 0.00 0.00 45.83 5.24
766 890 1.279840 GTGGACTTGCACTTGCGTC 59.720 57.895 0.00 0.00 45.83 5.19
767 891 1.891919 TGGACTTGCACTTGCGTCC 60.892 57.895 16.99 16.99 45.66 4.79
768 892 2.551270 GACTTGCACTTGCGTCCG 59.449 61.111 0.00 0.00 45.83 4.79
769 893 2.954753 GACTTGCACTTGCGTCCGG 61.955 63.158 0.00 0.00 45.83 5.14
770 894 3.726517 CTTGCACTTGCGTCCGGG 61.727 66.667 0.00 0.00 45.83 5.73
771 895 4.243008 TTGCACTTGCGTCCGGGA 62.243 61.111 0.00 0.00 45.83 5.14
772 896 4.680237 TGCACTTGCGTCCGGGAG 62.680 66.667 0.00 0.00 45.83 4.30
773 897 4.373116 GCACTTGCGTCCGGGAGA 62.373 66.667 0.00 0.00 0.00 3.71
774 898 2.579201 CACTTGCGTCCGGGAGAT 59.421 61.111 0.00 0.00 0.00 2.75
775 899 1.519455 CACTTGCGTCCGGGAGATC 60.519 63.158 0.00 0.00 0.00 2.75
776 900 2.278857 CTTGCGTCCGGGAGATCG 60.279 66.667 0.00 0.00 0.00 3.69
777 901 2.752640 TTGCGTCCGGGAGATCGA 60.753 61.111 0.00 0.00 0.00 3.59
778 902 2.938539 CTTGCGTCCGGGAGATCGAC 62.939 65.000 0.00 2.38 0.00 4.20
779 903 4.267503 GCGTCCGGGAGATCGACC 62.268 72.222 0.00 3.85 0.00 4.79
780 904 2.516460 CGTCCGGGAGATCGACCT 60.516 66.667 0.00 0.00 0.00 3.85
781 905 2.835705 CGTCCGGGAGATCGACCTG 61.836 68.421 0.00 12.01 0.00 4.00
782 906 2.833582 TCCGGGAGATCGACCTGC 60.834 66.667 0.00 0.00 32.89 4.85
783 907 4.271816 CCGGGAGATCGACCTGCG 62.272 72.222 13.10 8.64 42.69 5.18
784 908 4.933064 CGGGAGATCGACCTGCGC 62.933 72.222 0.00 0.00 40.61 6.09
785 909 4.593864 GGGAGATCGACCTGCGCC 62.594 72.222 4.18 0.00 40.61 6.53
786 910 3.838271 GGAGATCGACCTGCGCCA 61.838 66.667 4.18 0.00 40.61 5.69
787 911 2.279120 GAGATCGACCTGCGCCAG 60.279 66.667 4.18 1.92 40.61 4.85
800 924 2.349755 GCCAGGCGGGTGAAGTAA 59.650 61.111 5.36 0.00 39.65 2.24
801 925 1.302993 GCCAGGCGGGTGAAGTAAA 60.303 57.895 5.36 0.00 39.65 2.01
802 926 1.583495 GCCAGGCGGGTGAAGTAAAC 61.583 60.000 5.36 0.00 39.65 2.01
803 927 0.958876 CCAGGCGGGTGAAGTAAACC 60.959 60.000 0.00 0.00 36.94 3.27
810 934 2.368311 GGTGAAGTAAACCCACCCAA 57.632 50.000 9.81 0.00 43.32 4.12
811 935 1.958579 GGTGAAGTAAACCCACCCAAC 59.041 52.381 9.81 0.00 43.32 3.77
812 936 1.958579 GTGAAGTAAACCCACCCAACC 59.041 52.381 0.00 0.00 0.00 3.77
813 937 1.133419 TGAAGTAAACCCACCCAACCC 60.133 52.381 0.00 0.00 0.00 4.11
814 938 0.935194 AAGTAAACCCACCCAACCCA 59.065 50.000 0.00 0.00 0.00 4.51
815 939 0.481128 AGTAAACCCACCCAACCCAG 59.519 55.000 0.00 0.00 0.00 4.45
816 940 1.154221 TAAACCCACCCAACCCAGC 59.846 57.895 0.00 0.00 0.00 4.85
817 941 2.374781 TAAACCCACCCAACCCAGCC 62.375 60.000 0.00 0.00 0.00 4.85
819 943 3.996621 CCCACCCAACCCAGCCAT 61.997 66.667 0.00 0.00 0.00 4.40
820 944 2.681064 CCACCCAACCCAGCCATG 60.681 66.667 0.00 0.00 0.00 3.66
853 977 2.679716 GCTCCATCTTGGCCCTGT 59.320 61.111 0.00 0.00 37.47 4.00
919 1051 1.674651 ACTCAGCGAGTGTCGGCTA 60.675 57.895 9.85 0.00 41.76 3.93
921 1053 1.923227 CTCAGCGAGTGTCGGCTACA 61.923 60.000 0.00 0.00 40.84 2.74
931 1063 2.453521 TGTCGGCTACACCTCATTACT 58.546 47.619 0.00 0.00 35.61 2.24
933 1065 3.630769 TGTCGGCTACACCTCATTACTAG 59.369 47.826 0.00 0.00 35.61 2.57
935 1067 2.288273 CGGCTACACCTCATTACTAGCC 60.288 54.545 4.24 4.24 44.17 3.93
942 1074 4.192317 CACCTCATTACTAGCCTTTGTCC 58.808 47.826 0.00 0.00 0.00 4.02
943 1075 3.118738 ACCTCATTACTAGCCTTTGTCCG 60.119 47.826 0.00 0.00 0.00 4.79
944 1076 2.866762 CTCATTACTAGCCTTTGTCCGC 59.133 50.000 0.00 0.00 0.00 5.54
972 1110 4.988065 GTGGAACTGTAGCGCTGA 57.012 55.556 22.90 5.35 0.00 4.26
973 1111 3.442996 GTGGAACTGTAGCGCTGAT 57.557 52.632 22.90 0.00 0.00 2.90
1004 1142 2.672414 AGCTTAGCTGTCTTCCCGT 58.328 52.632 5.70 0.00 37.57 5.28
1005 1143 0.247736 AGCTTAGCTGTCTTCCCGTG 59.752 55.000 5.70 0.00 37.57 4.94
1007 1145 1.337823 GCTTAGCTGTCTTCCCGTGAA 60.338 52.381 0.00 0.00 0.00 3.18
1008 1146 2.678190 GCTTAGCTGTCTTCCCGTGAAT 60.678 50.000 0.00 0.00 0.00 2.57
1009 1147 2.672961 TAGCTGTCTTCCCGTGAATG 57.327 50.000 0.00 0.00 0.00 2.67
1010 1148 0.687354 AGCTGTCTTCCCGTGAATGT 59.313 50.000 0.00 0.00 0.00 2.71
1011 1149 0.798776 GCTGTCTTCCCGTGAATGTG 59.201 55.000 0.00 0.00 0.00 3.21
1012 1150 0.798776 CTGTCTTCCCGTGAATGTGC 59.201 55.000 0.00 0.00 0.00 4.57
1013 1151 0.396435 TGTCTTCCCGTGAATGTGCT 59.604 50.000 0.00 0.00 0.00 4.40
1015 1153 0.684535 TCTTCCCGTGAATGTGCTGA 59.315 50.000 0.00 0.00 0.00 4.26
1016 1154 1.278985 TCTTCCCGTGAATGTGCTGAT 59.721 47.619 0.00 0.00 0.00 2.90
1017 1155 1.399440 CTTCCCGTGAATGTGCTGATG 59.601 52.381 0.00 0.00 0.00 3.07
1018 1156 0.324614 TCCCGTGAATGTGCTGATGT 59.675 50.000 0.00 0.00 0.00 3.06
1019 1157 1.552792 TCCCGTGAATGTGCTGATGTA 59.447 47.619 0.00 0.00 0.00 2.29
1020 1158 1.665679 CCCGTGAATGTGCTGATGTAC 59.334 52.381 0.00 0.00 0.00 2.90
1021 1159 2.621338 CCGTGAATGTGCTGATGTACT 58.379 47.619 0.00 0.00 0.00 2.73
1022 1160 2.604914 CCGTGAATGTGCTGATGTACTC 59.395 50.000 0.00 0.00 0.00 2.59
1023 1161 2.604914 CGTGAATGTGCTGATGTACTCC 59.395 50.000 0.00 0.00 0.00 3.85
1024 1162 2.604914 GTGAATGTGCTGATGTACTCCG 59.395 50.000 0.00 0.00 0.00 4.63
1036 1174 1.992170 GTACTCCGCACAAGTACAGG 58.008 55.000 12.82 0.00 45.46 4.00
1047 1193 5.105752 GCACAAGTACAGGTGATCTAGAAG 58.894 45.833 17.88 0.00 37.18 2.85
1059 1205 1.752683 TCTAGAAGGAGCGTGGACTC 58.247 55.000 0.00 0.00 35.86 3.36
1062 1208 0.827925 AGAAGGAGCGTGGACTCACA 60.828 55.000 0.00 0.00 43.79 3.58
1330 1511 6.989169 CCTATCAATTCTTTCAAGGTCGATCT 59.011 38.462 0.00 0.00 0.00 2.75
1559 1746 4.728102 CACGACGCCGGTAAGCCA 62.728 66.667 1.90 0.00 40.78 4.75
1601 1789 2.695666 ACTCCGTCCTTGATACCTGATG 59.304 50.000 0.00 0.00 0.00 3.07
1620 1808 3.769739 TGTGCTGATTACCACACTCTT 57.230 42.857 0.00 0.00 37.07 2.85
1691 1884 0.661187 GTTAGTGCGTGTTCGTCCGA 60.661 55.000 0.00 0.00 39.49 4.55
1693 1886 0.386352 TAGTGCGTGTTCGTCCGAAG 60.386 55.000 1.78 0.00 39.49 3.79
1696 1889 1.210545 TGCGTGTTCGTCCGAAGAAC 61.211 55.000 17.34 17.34 39.49 3.01
1718 1911 0.454600 GCAGCATTAGCATGTGCACT 59.545 50.000 19.41 0.00 45.49 4.40
1742 1935 6.500684 ACTTTTACGTGTTAGTCGGATCTA 57.499 37.500 0.00 0.00 0.00 1.98
1743 1936 6.549952 ACTTTTACGTGTTAGTCGGATCTAG 58.450 40.000 0.00 0.00 0.00 2.43
1744 1937 4.542662 TTACGTGTTAGTCGGATCTAGC 57.457 45.455 0.00 0.00 0.00 3.42
1745 1938 2.641305 ACGTGTTAGTCGGATCTAGCT 58.359 47.619 0.00 0.00 0.00 3.32
1759 1952 4.202070 GGATCTAGCTAGTGTTGACCAGAC 60.202 50.000 20.10 0.00 0.00 3.51
1771 1964 3.349006 CCAGACACTGCACCGTGC 61.349 66.667 16.93 16.93 45.29 5.34
1789 1982 1.611006 TGCTGGATCGAGCTCACTATC 59.389 52.381 27.08 12.59 39.90 2.08
1810 2003 1.738030 GCTATGGTGACCACGTGTACC 60.738 57.143 20.61 20.61 35.80 3.34
2199 2392 2.023673 TCCCCCATAACACGTACGTAG 58.976 52.381 22.34 17.19 0.00 3.51
2211 2404 0.743097 GTACGTAGCCGAACCCATCT 59.257 55.000 0.00 0.00 37.88 2.90
2212 2405 1.949525 GTACGTAGCCGAACCCATCTA 59.050 52.381 0.00 0.00 37.88 1.98
2213 2406 0.743097 ACGTAGCCGAACCCATCTAC 59.257 55.000 0.00 0.00 37.88 2.59
2214 2407 1.030457 CGTAGCCGAACCCATCTACT 58.970 55.000 0.00 0.00 35.63 2.57
2215 2408 2.224606 CGTAGCCGAACCCATCTACTA 58.775 52.381 0.00 0.00 35.63 1.82
2216 2409 2.225963 CGTAGCCGAACCCATCTACTAG 59.774 54.545 0.00 0.00 35.63 2.57
2217 2410 2.750141 AGCCGAACCCATCTACTAGA 57.250 50.000 0.00 0.00 0.00 2.43
2218 2411 2.308690 AGCCGAACCCATCTACTAGAC 58.691 52.381 0.00 0.00 0.00 2.59
2219 2412 2.091775 AGCCGAACCCATCTACTAGACT 60.092 50.000 0.00 0.00 0.00 3.24
2220 2413 3.137913 AGCCGAACCCATCTACTAGACTA 59.862 47.826 0.00 0.00 0.00 2.59
2221 2414 3.252944 GCCGAACCCATCTACTAGACTAC 59.747 52.174 0.00 0.00 0.00 2.73
2230 2423 6.043474 CCCATCTACTAGACTACTACTCCAGT 59.957 46.154 0.00 0.00 41.62 4.00
2242 2435 1.078848 CTCCAGTTCAGAAGCCGGG 60.079 63.158 2.18 0.00 0.00 5.73
2247 2440 0.678048 AGTTCAGAAGCCGGGCATTC 60.678 55.000 23.09 19.90 0.00 2.67
2248 2441 1.378514 TTCAGAAGCCGGGCATTCC 60.379 57.895 23.09 6.82 0.00 3.01
2249 2442 1.852157 TTCAGAAGCCGGGCATTCCT 61.852 55.000 23.09 9.11 0.00 3.36
2250 2443 1.379044 CAGAAGCCGGGCATTCCTT 60.379 57.895 23.09 5.90 0.00 3.36
2252 2445 0.681243 AGAAGCCGGGCATTCCTTTC 60.681 55.000 23.09 14.53 0.00 2.62
2256 2449 1.754234 CCGGGCATTCCTTTCCCTG 60.754 63.158 0.00 0.00 37.89 4.45
2257 2450 1.754234 CGGGCATTCCTTTCCCTGG 60.754 63.158 0.00 0.00 37.89 4.45
2258 2451 1.381735 GGGCATTCCTTTCCCTGGG 60.382 63.158 6.33 6.33 37.08 4.45
2260 2453 0.972471 GGCATTCCTTTCCCTGGGTG 60.972 60.000 13.56 2.54 0.00 4.61
2261 2454 0.972471 GCATTCCTTTCCCTGGGTGG 60.972 60.000 13.56 13.42 0.00 4.61
2262 2455 0.972471 CATTCCTTTCCCTGGGTGGC 60.972 60.000 13.56 0.00 0.00 5.01
2263 2456 1.442886 ATTCCTTTCCCTGGGTGGCA 61.443 55.000 13.56 4.89 0.00 4.92
2399 2592 2.811317 GACGCGCACCTCTTCCTG 60.811 66.667 5.73 0.00 0.00 3.86
2507 2700 2.745037 CCTCCGTTCAACCCCGAA 59.255 61.111 0.00 0.00 0.00 4.30
2579 2773 0.036858 GGTCTGGTCTCAGGTGAAGC 60.037 60.000 0.00 0.00 41.23 3.86
2764 2961 2.229543 TGGTGGATGTGACGTACAGTAC 59.770 50.000 0.00 0.00 43.80 2.73
2771 2968 5.106396 GGATGTGACGTACAGTACTAGTGTT 60.106 44.000 5.39 0.00 43.80 3.32
2772 2969 5.348418 TGTGACGTACAGTACTAGTGTTC 57.652 43.478 5.39 0.00 33.15 3.18
2773 2970 4.084380 TGTGACGTACAGTACTAGTGTTCG 60.084 45.833 17.00 17.00 44.38 3.95
2786 3079 2.557317 AGTGTTCGTTCATGAAACCGT 58.443 42.857 10.35 0.00 34.11 4.83
2826 3119 6.148948 CGCCTGAATGTATTTCAAACTTGAA 58.851 36.000 0.69 0.69 43.64 2.69
2881 3194 8.273780 ACTCATTTGATTTTAGCTGGTTAGAG 57.726 34.615 0.00 0.00 0.00 2.43
2883 3196 6.658816 TCATTTGATTTTAGCTGGTTAGAGCA 59.341 34.615 0.00 0.00 41.83 4.26
2941 3254 2.233922 ACCAGTGTCGATGTTAAGGGAG 59.766 50.000 0.00 0.00 0.00 4.30
2958 3271 1.492599 GGAGGGAAAGGCTTGCTAGAT 59.507 52.381 4.95 0.00 0.00 1.98
2959 3272 2.570135 GAGGGAAAGGCTTGCTAGATG 58.430 52.381 4.95 0.00 0.00 2.90
2961 3274 1.028130 GGAAAGGCTTGCTAGATGGC 58.972 55.000 4.95 0.00 0.00 4.40
2983 3296 8.012957 TGGCAATTTAATATTCGGGTTTGTAT 57.987 30.769 0.00 0.00 0.00 2.29
2984 3297 7.923344 TGGCAATTTAATATTCGGGTTTGTATG 59.077 33.333 0.00 0.00 0.00 2.39
3044 3357 4.136796 TGGTTCACTTTCCAATCTCACAG 58.863 43.478 0.00 0.00 0.00 3.66
3046 3359 4.453819 GGTTCACTTTCCAATCTCACAGAG 59.546 45.833 0.00 0.00 0.00 3.35
3061 3374 3.525537 CACAGAGTGTGTTGAGTCTTGT 58.474 45.455 0.00 0.00 43.08 3.16
3062 3375 3.308053 CACAGAGTGTGTTGAGTCTTGTG 59.692 47.826 0.00 0.00 43.08 3.33
3063 3376 2.286294 CAGAGTGTGTTGAGTCTTGTGC 59.714 50.000 0.00 0.00 0.00 4.57
3064 3377 2.169352 AGAGTGTGTTGAGTCTTGTGCT 59.831 45.455 0.00 0.00 0.00 4.40
3065 3378 3.384789 AGAGTGTGTTGAGTCTTGTGCTA 59.615 43.478 0.00 0.00 0.00 3.49
3066 3379 4.039730 AGAGTGTGTTGAGTCTTGTGCTAT 59.960 41.667 0.00 0.00 0.00 2.97
3067 3380 5.243954 AGAGTGTGTTGAGTCTTGTGCTATA 59.756 40.000 0.00 0.00 0.00 1.31
3068 3381 5.473931 AGTGTGTTGAGTCTTGTGCTATAG 58.526 41.667 0.00 0.00 0.00 1.31
3075 3388 2.159085 AGTCTTGTGCTATAGCCGGTTC 60.159 50.000 21.84 8.24 41.18 3.62
3085 3398 5.094134 GCTATAGCCGGTTCTTATTCTACG 58.906 45.833 14.13 0.00 34.31 3.51
3089 3402 1.411612 CCGGTTCTTATTCTACGGCCT 59.588 52.381 0.00 0.00 34.54 5.19
3090 3403 2.470821 CGGTTCTTATTCTACGGCCTG 58.529 52.381 0.00 0.00 0.00 4.85
3095 3408 5.163784 GGTTCTTATTCTACGGCCTGTTTTC 60.164 44.000 0.00 0.00 0.00 2.29
3096 3409 5.416271 TCTTATTCTACGGCCTGTTTTCT 57.584 39.130 0.00 0.00 0.00 2.52
3117 3430 6.347859 TCTTTCTCTCTCCTCCAACTAAAC 57.652 41.667 0.00 0.00 0.00 2.01
3120 3433 5.470047 TCTCTCTCCTCCAACTAAACAAC 57.530 43.478 0.00 0.00 0.00 3.32
3127 3440 8.246430 TCTCCTCCAACTAAACAACGATATAT 57.754 34.615 0.00 0.00 0.00 0.86
3168 3496 7.456725 AGTCTGCTTATGTAATCCTATTGCAT 58.543 34.615 8.05 8.05 0.00 3.96
3180 3508 6.795144 ATCCTATTGCATTTGATCAACCAA 57.205 33.333 7.89 11.98 0.00 3.67
3189 3517 5.118510 GCATTTGATCAACCAAACTTAACGG 59.881 40.000 7.89 0.00 38.65 4.44
3215 3543 4.781959 TCCTAAACGTCGGCGGCG 62.782 66.667 33.62 33.62 43.45 6.46
3264 3592 3.753797 GTCACCCTTCAAATGTCCTCTTC 59.246 47.826 0.00 0.00 0.00 2.87
3270 3598 6.183347 CCCTTCAAATGTCCTCTTCTACAAT 58.817 40.000 0.00 0.00 0.00 2.71
3382 3710 0.393077 CCTTGTTCCTGTCCGTGTCT 59.607 55.000 0.00 0.00 0.00 3.41
3518 3846 0.392863 TGGCCTCGATGTCACCATTG 60.393 55.000 3.32 0.00 34.25 2.82
3532 3860 0.921896 CCATTGGAGGTGAGGTCCAT 59.078 55.000 0.00 0.00 43.78 3.41
3613 3946 2.109181 GGTCACCCATAGCGGCTC 59.891 66.667 5.39 0.00 0.00 4.70
3620 3953 4.529219 CATAGCGGCTCCGTGGCA 62.529 66.667 5.39 0.00 41.89 4.92
3642 3975 3.138798 GCGACTCCACCTCCGCTA 61.139 66.667 0.00 0.00 43.75 4.26
3687 4025 2.015456 TGCCCTACGATCATGATCCT 57.985 50.000 26.30 18.63 34.40 3.24
3699 4037 7.175797 ACGATCATGATCCTAGGAACACTATA 58.824 38.462 26.30 9.77 34.40 1.31
3737 4076 7.565680 AGATTAGGTCGGATCATTACAACTTT 58.434 34.615 0.00 0.00 0.00 2.66
3744 4083 7.280205 GGTCGGATCATTACAACTTTGAGTTAT 59.720 37.037 0.00 0.00 36.03 1.89
3820 4159 2.987149 TGATCGCTCGAACAAAAGACTC 59.013 45.455 0.00 0.00 0.00 3.36
3838 4177 3.093057 ACTCAAAGCACGACCTCTCTAT 58.907 45.455 0.00 0.00 0.00 1.98
3863 4202 4.929819 TTATGAGCGTATAGGCTTCACA 57.070 40.909 20.17 14.11 44.93 3.58
3868 4207 4.119862 GAGCGTATAGGCTTCACAATTCA 58.880 43.478 20.17 0.00 44.93 2.57
3872 4211 4.634004 CGTATAGGCTTCACAATTCACCAA 59.366 41.667 0.00 0.00 0.00 3.67
3880 4219 2.884012 TCACAATTCACCAACGCTTCAT 59.116 40.909 0.00 0.00 0.00 2.57
3915 4254 1.591768 GTCACCAGGGAATTAGGGGA 58.408 55.000 0.00 0.00 30.97 4.81
3916 4255 1.490910 GTCACCAGGGAATTAGGGGAG 59.509 57.143 0.00 0.00 35.04 4.30
3917 4256 1.368203 TCACCAGGGAATTAGGGGAGA 59.632 52.381 0.00 0.00 29.81 3.71
3918 4257 2.205342 CACCAGGGAATTAGGGGAGAA 58.795 52.381 0.00 0.00 0.00 2.87
3919 4258 2.173569 CACCAGGGAATTAGGGGAGAAG 59.826 54.545 0.00 0.00 0.00 2.85
3920 4259 2.047296 ACCAGGGAATTAGGGGAGAAGA 59.953 50.000 0.00 0.00 0.00 2.87
3921 4260 3.123273 CCAGGGAATTAGGGGAGAAGAA 58.877 50.000 0.00 0.00 0.00 2.52
3922 4261 3.137360 CCAGGGAATTAGGGGAGAAGAAG 59.863 52.174 0.00 0.00 0.00 2.85
3923 4262 4.040755 CAGGGAATTAGGGGAGAAGAAGA 58.959 47.826 0.00 0.00 0.00 2.87
3924 4263 4.102367 CAGGGAATTAGGGGAGAAGAAGAG 59.898 50.000 0.00 0.00 0.00 2.85
3925 4264 4.015163 AGGGAATTAGGGGAGAAGAAGAGA 60.015 45.833 0.00 0.00 0.00 3.10
3926 4265 4.722279 GGGAATTAGGGGAGAAGAAGAGAA 59.278 45.833 0.00 0.00 0.00 2.87
3927 4266 5.396996 GGGAATTAGGGGAGAAGAAGAGAAC 60.397 48.000 0.00 0.00 0.00 3.01
3928 4267 5.396996 GGAATTAGGGGAGAAGAAGAGAACC 60.397 48.000 0.00 0.00 0.00 3.62
3929 4268 1.562783 AGGGGAGAAGAAGAGAACCG 58.437 55.000 0.00 0.00 0.00 4.44
3930 4269 0.108089 GGGGAGAAGAAGAGAACCGC 60.108 60.000 0.00 0.00 0.00 5.68
3931 4270 0.608640 GGGAGAAGAAGAGAACCGCA 59.391 55.000 0.00 0.00 0.00 5.69
3932 4271 1.673329 GGGAGAAGAAGAGAACCGCAC 60.673 57.143 0.00 0.00 0.00 5.34
3933 4272 1.673329 GGAGAAGAAGAGAACCGCACC 60.673 57.143 0.00 0.00 0.00 5.01
3934 4273 0.038159 AGAAGAAGAGAACCGCACCG 60.038 55.000 0.00 0.00 0.00 4.94
3944 4283 2.893404 CCGCACCGGGGTTAATCG 60.893 66.667 5.12 0.00 44.15 3.34
3945 4284 2.125431 CGCACCGGGGTTAATCGT 60.125 61.111 5.12 0.00 0.00 3.73
3946 4285 2.169146 CGCACCGGGGTTAATCGTC 61.169 63.158 5.12 0.00 0.00 4.20
3947 4286 1.078988 GCACCGGGGTTAATCGTCA 60.079 57.895 5.12 0.00 0.00 4.35
3948 4287 1.363885 GCACCGGGGTTAATCGTCAC 61.364 60.000 5.12 0.00 0.00 3.67
3949 4288 0.741927 CACCGGGGTTAATCGTCACC 60.742 60.000 6.32 0.00 0.00 4.02
3950 4289 1.193462 ACCGGGGTTAATCGTCACCA 61.193 55.000 6.32 0.00 34.36 4.17
3951 4290 0.461339 CCGGGGTTAATCGTCACCAG 60.461 60.000 0.00 0.00 34.36 4.00
3952 4291 0.461339 CGGGGTTAATCGTCACCAGG 60.461 60.000 0.00 0.00 34.36 4.45
3953 4292 0.107361 GGGGTTAATCGTCACCAGGG 60.107 60.000 0.00 0.00 34.36 4.45
3954 4293 0.906775 GGGTTAATCGTCACCAGGGA 59.093 55.000 0.00 0.00 34.36 4.20
3955 4294 1.279846 GGGTTAATCGTCACCAGGGAA 59.720 52.381 0.00 0.00 34.36 3.97
3956 4295 2.092592 GGGTTAATCGTCACCAGGGAAT 60.093 50.000 0.00 0.00 34.36 3.01
3957 4296 3.617284 GGTTAATCGTCACCAGGGAATT 58.383 45.455 0.00 0.00 32.74 2.17
3958 4297 4.384427 GGGTTAATCGTCACCAGGGAATTA 60.384 45.833 0.00 0.00 34.36 1.40
3959 4298 4.814771 GGTTAATCGTCACCAGGGAATTAG 59.185 45.833 0.00 0.00 32.74 1.73
3960 4299 3.560636 AATCGTCACCAGGGAATTAGG 57.439 47.619 0.00 0.00 0.00 2.69
3961 4300 1.200519 TCGTCACCAGGGAATTAGGG 58.799 55.000 0.00 0.00 0.00 3.53
3982 4321 0.038159 AGAAGAAGAGAACCGCACCG 60.038 55.000 0.00 0.00 0.00 4.94
4014 4359 9.930693 CTGTAGGAACAAGAAAACTAGAACTAT 57.069 33.333 0.00 0.00 34.49 2.12
4074 4419 3.308866 CGAGACAACGGAAGAAAACTTGT 59.691 43.478 0.00 0.00 0.00 3.16
4075 4420 4.505191 CGAGACAACGGAAGAAAACTTGTA 59.495 41.667 0.00 0.00 0.00 2.41
4087 4432 5.351405 AGAAAACTTGTATCTCTAGGGGGT 58.649 41.667 0.00 0.00 0.00 4.95
4123 4468 7.608405 TGTATATATAGGTGTAAGGGGAGGA 57.392 40.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 86 3.786586 GCGGTCTCGTCGTCGTCT 61.787 66.667 1.33 0.00 38.89 4.18
160 170 0.093026 GACACCGAGCAACGATTTCG 59.907 55.000 4.96 0.00 45.77 3.46
221 231 1.296715 GTCTGGGCACATCCTCGTT 59.703 57.895 0.00 0.00 34.39 3.85
258 273 1.148273 GCATCCCTAACCGGCATCA 59.852 57.895 0.00 0.00 0.00 3.07
268 283 2.434843 CGTCCCTGCTGCATCCCTA 61.435 63.158 1.31 0.00 0.00 3.53
333 408 1.395826 CCTTCTACCTGCCGAGGAGG 61.396 65.000 9.38 9.38 42.93 4.30
344 419 4.858680 GCCGCCCAGCCTTCTACC 62.859 72.222 0.00 0.00 0.00 3.18
490 613 1.271379 CCACCACCCTGAGATCGTTTT 60.271 52.381 0.00 0.00 0.00 2.43
491 614 0.324943 CCACCACCCTGAGATCGTTT 59.675 55.000 0.00 0.00 0.00 3.60
492 615 1.983224 CCACCACCCTGAGATCGTT 59.017 57.895 0.00 0.00 0.00 3.85
493 616 2.660064 GCCACCACCCTGAGATCGT 61.660 63.158 0.00 0.00 0.00 3.73
497 620 2.930019 CCAGCCACCACCCTGAGA 60.930 66.667 0.00 0.00 0.00 3.27
500 623 3.579302 TTCCCAGCCACCACCCTG 61.579 66.667 0.00 0.00 0.00 4.45
501 624 3.580319 GTTCCCAGCCACCACCCT 61.580 66.667 0.00 0.00 0.00 4.34
540 664 0.036732 TTCAGAGCATTTCCAGCCGT 59.963 50.000 0.00 0.00 0.00 5.68
541 665 1.332997 GATTCAGAGCATTTCCAGCCG 59.667 52.381 0.00 0.00 0.00 5.52
542 666 1.680207 GGATTCAGAGCATTTCCAGCC 59.320 52.381 0.00 0.00 0.00 4.85
543 667 2.358267 CTGGATTCAGAGCATTTCCAGC 59.642 50.000 0.00 0.00 44.92 4.85
554 678 2.504920 ATCCGCGTCTGGATTCAGA 58.495 52.632 4.92 0.00 46.74 3.27
575 699 2.668212 ATGTTGGTGCGGTCCACG 60.668 61.111 0.00 0.00 45.62 4.94
576 700 1.599518 TGATGTTGGTGCGGTCCAC 60.600 57.895 0.00 0.00 43.90 4.02
577 701 1.599518 GTGATGTTGGTGCGGTCCA 60.600 57.895 0.00 0.00 35.49 4.02
578 702 2.677003 CGTGATGTTGGTGCGGTCC 61.677 63.158 0.00 0.00 0.00 4.46
579 703 1.897398 GACGTGATGTTGGTGCGGTC 61.897 60.000 0.00 0.00 0.00 4.79
580 704 1.959226 GACGTGATGTTGGTGCGGT 60.959 57.895 0.00 0.00 0.00 5.68
581 705 1.958715 TGACGTGATGTTGGTGCGG 60.959 57.895 0.00 0.00 0.00 5.69
582 706 1.204062 GTGACGTGATGTTGGTGCG 59.796 57.895 0.00 0.00 0.00 5.34
583 707 1.163420 TGGTGACGTGATGTTGGTGC 61.163 55.000 0.00 0.00 0.00 5.01
584 708 0.867746 CTGGTGACGTGATGTTGGTG 59.132 55.000 0.00 0.00 0.00 4.17
585 709 0.250295 CCTGGTGACGTGATGTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
586 710 0.034756 TCCTGGTGACGTGATGTTGG 59.965 55.000 0.00 0.00 0.00 3.77
587 711 1.432514 CTCCTGGTGACGTGATGTTG 58.567 55.000 0.00 0.00 0.00 3.33
588 712 0.321671 CCTCCTGGTGACGTGATGTT 59.678 55.000 0.00 0.00 0.00 2.71
589 713 0.832135 ACCTCCTGGTGACGTGATGT 60.832 55.000 0.00 0.00 46.51 3.06
590 714 1.975327 ACCTCCTGGTGACGTGATG 59.025 57.895 0.00 0.00 46.51 3.07
591 715 4.541213 ACCTCCTGGTGACGTGAT 57.459 55.556 0.00 0.00 46.51 3.06
600 724 1.341531 GATATGACACCGACCTCCTGG 59.658 57.143 0.00 0.00 39.83 4.45
601 725 1.001268 CGATATGACACCGACCTCCTG 60.001 57.143 0.00 0.00 0.00 3.86
602 726 1.133884 TCGATATGACACCGACCTCCT 60.134 52.381 0.00 0.00 0.00 3.69
603 727 1.315690 TCGATATGACACCGACCTCC 58.684 55.000 0.00 0.00 0.00 4.30
614 738 1.500396 CGCGGATCGGTCGATATGA 59.500 57.895 5.81 0.00 34.60 2.15
615 739 2.152699 GCGCGGATCGGTCGATATG 61.153 63.158 8.83 3.33 38.94 1.78
616 740 2.178521 GCGCGGATCGGTCGATAT 59.821 61.111 8.83 0.00 38.94 1.63
617 741 4.034258 GGCGCGGATCGGTCGATA 62.034 66.667 8.83 0.00 38.94 2.92
634 758 3.583882 AATGGGTTGGGTGCTCCGG 62.584 63.158 0.00 0.00 38.76 5.14
635 759 1.595093 GAAATGGGTTGGGTGCTCCG 61.595 60.000 0.00 0.00 38.76 4.63
636 760 1.595093 CGAAATGGGTTGGGTGCTCC 61.595 60.000 0.00 0.00 0.00 4.70
637 761 1.595093 CCGAAATGGGTTGGGTGCTC 61.595 60.000 0.00 0.00 30.65 4.26
638 762 1.606313 CCGAAATGGGTTGGGTGCT 60.606 57.895 0.00 0.00 30.65 4.40
639 763 2.969827 CCGAAATGGGTTGGGTGC 59.030 61.111 0.00 0.00 30.65 5.01
640 764 2.969827 GCCGAAATGGGTTGGGTG 59.030 61.111 0.00 0.00 37.42 4.61
641 765 2.675075 CGCCGAAATGGGTTGGGT 60.675 61.111 0.00 0.00 37.42 4.51
642 766 4.128388 GCGCCGAAATGGGTTGGG 62.128 66.667 0.00 0.00 38.12 4.12
643 767 3.051392 GAGCGCCGAAATGGGTTGG 62.051 63.158 2.29 0.00 38.63 3.77
644 768 1.982073 GAGAGCGCCGAAATGGGTTG 61.982 60.000 2.29 0.00 38.63 3.77
645 769 1.745489 GAGAGCGCCGAAATGGGTT 60.745 57.895 2.29 0.00 38.63 4.11
646 770 2.125106 GAGAGCGCCGAAATGGGT 60.125 61.111 2.29 0.00 38.63 4.51
647 771 3.264897 CGAGAGCGCCGAAATGGG 61.265 66.667 2.29 0.00 38.63 4.00
659 783 3.181967 CGTCCGGCAAAGCGAGAG 61.182 66.667 0.00 0.00 0.00 3.20
660 784 3.215597 TTCGTCCGGCAAAGCGAGA 62.216 57.895 0.00 0.00 34.78 4.04
661 785 2.736995 TTCGTCCGGCAAAGCGAG 60.737 61.111 0.00 0.00 34.78 5.03
662 786 3.039588 GTTCGTCCGGCAAAGCGA 61.040 61.111 0.00 0.00 0.00 4.93
663 787 4.424430 CGTTCGTCCGGCAAAGCG 62.424 66.667 0.00 0.00 0.00 4.68
664 788 4.084888 CCGTTCGTCCGGCAAAGC 62.085 66.667 0.00 0.00 41.78 3.51
672 796 4.754667 GGGTGGAGCCGTTCGTCC 62.755 72.222 0.00 0.00 38.44 4.79
673 797 3.692406 AGGGTGGAGCCGTTCGTC 61.692 66.667 0.00 0.00 38.44 4.20
674 798 4.003788 CAGGGTGGAGCCGTTCGT 62.004 66.667 0.00 0.00 38.44 3.85
675 799 4.760047 CCAGGGTGGAGCCGTTCG 62.760 72.222 0.00 0.00 40.96 3.95
676 800 3.637273 ACCAGGGTGGAGCCGTTC 61.637 66.667 0.00 0.00 40.96 3.95
677 801 3.953775 CACCAGGGTGGAGCCGTT 61.954 66.667 10.67 0.00 40.96 4.44
700 824 4.314440 TCACCCACTCACCGCAGC 62.314 66.667 0.00 0.00 0.00 5.25
701 825 2.047844 CTCACCCACTCACCGCAG 60.048 66.667 0.00 0.00 0.00 5.18
702 826 3.625897 CCTCACCCACTCACCGCA 61.626 66.667 0.00 0.00 0.00 5.69
704 828 3.596066 CTGCCTCACCCACTCACCG 62.596 68.421 0.00 0.00 0.00 4.94
705 829 1.192146 TACTGCCTCACCCACTCACC 61.192 60.000 0.00 0.00 0.00 4.02
706 830 0.247736 CTACTGCCTCACCCACTCAC 59.752 60.000 0.00 0.00 0.00 3.51
707 831 0.178932 ACTACTGCCTCACCCACTCA 60.179 55.000 0.00 0.00 0.00 3.41
708 832 1.751924 CTACTACTGCCTCACCCACTC 59.248 57.143 0.00 0.00 0.00 3.51
709 833 1.077334 ACTACTACTGCCTCACCCACT 59.923 52.381 0.00 0.00 0.00 4.00
710 834 1.558233 ACTACTACTGCCTCACCCAC 58.442 55.000 0.00 0.00 0.00 4.61
711 835 3.204606 AGATACTACTACTGCCTCACCCA 59.795 47.826 0.00 0.00 0.00 4.51
712 836 3.822167 GAGATACTACTACTGCCTCACCC 59.178 52.174 0.00 0.00 0.00 4.61
713 837 4.462133 TGAGATACTACTACTGCCTCACC 58.538 47.826 0.00 0.00 0.00 4.02
714 838 4.517453 CCTGAGATACTACTACTGCCTCAC 59.483 50.000 0.00 0.00 0.00 3.51
715 839 4.412528 TCCTGAGATACTACTACTGCCTCA 59.587 45.833 0.00 0.00 0.00 3.86
716 840 4.975631 TCCTGAGATACTACTACTGCCTC 58.024 47.826 0.00 0.00 0.00 4.70
717 841 4.202524 CCTCCTGAGATACTACTACTGCCT 60.203 50.000 0.00 0.00 0.00 4.75
718 842 4.076394 CCTCCTGAGATACTACTACTGCC 58.924 52.174 0.00 0.00 0.00 4.85
719 843 4.721132 ACCTCCTGAGATACTACTACTGC 58.279 47.826 0.00 0.00 0.00 4.40
720 844 5.995282 CAGACCTCCTGAGATACTACTACTG 59.005 48.000 0.00 0.00 45.78 2.74
721 845 5.455612 GCAGACCTCCTGAGATACTACTACT 60.456 48.000 0.00 0.00 45.78 2.57
722 846 4.758165 GCAGACCTCCTGAGATACTACTAC 59.242 50.000 0.00 0.00 45.78 2.73
723 847 4.412528 TGCAGACCTCCTGAGATACTACTA 59.587 45.833 0.00 0.00 45.78 1.82
724 848 3.203263 TGCAGACCTCCTGAGATACTACT 59.797 47.826 0.00 0.00 45.78 2.57
725 849 3.316868 GTGCAGACCTCCTGAGATACTAC 59.683 52.174 0.00 0.00 45.78 2.73
726 850 3.556999 GTGCAGACCTCCTGAGATACTA 58.443 50.000 0.00 0.00 45.78 1.82
727 851 2.383855 GTGCAGACCTCCTGAGATACT 58.616 52.381 0.00 0.00 45.78 2.12
728 852 1.066303 CGTGCAGACCTCCTGAGATAC 59.934 57.143 0.00 0.00 45.78 2.24
729 853 1.341089 ACGTGCAGACCTCCTGAGATA 60.341 52.381 0.00 0.00 45.78 1.98
730 854 0.613292 ACGTGCAGACCTCCTGAGAT 60.613 55.000 0.00 0.00 45.78 2.75
731 855 1.228583 ACGTGCAGACCTCCTGAGA 60.229 57.895 0.00 0.00 45.78 3.27
732 856 1.080230 CACGTGCAGACCTCCTGAG 60.080 63.158 0.82 0.00 45.78 3.35
733 857 2.574018 CCACGTGCAGACCTCCTGA 61.574 63.158 10.91 0.00 45.78 3.86
734 858 2.047844 CCACGTGCAGACCTCCTG 60.048 66.667 10.91 0.00 45.67 3.86
735 859 2.203640 TCCACGTGCAGACCTCCT 60.204 61.111 10.91 0.00 0.00 3.69
736 860 2.048127 GTCCACGTGCAGACCTCC 60.048 66.667 10.91 0.00 0.00 4.30
737 861 0.946221 CAAGTCCACGTGCAGACCTC 60.946 60.000 17.84 0.00 33.29 3.85
738 862 1.069765 CAAGTCCACGTGCAGACCT 59.930 57.895 17.84 5.92 33.29 3.85
739 863 3.642755 CAAGTCCACGTGCAGACC 58.357 61.111 17.84 4.51 33.29 3.85
745 869 1.009675 GCAAGTGCAAGTCCACGTG 60.010 57.895 9.08 9.08 44.47 4.49
746 870 2.534019 CGCAAGTGCAAGTCCACGT 61.534 57.895 3.87 0.00 42.21 4.49
747 871 2.249309 CGCAAGTGCAAGTCCACG 59.751 61.111 3.87 0.00 42.21 4.94
760 884 2.752640 TCGATCTCCCGGACGCAA 60.753 61.111 0.73 0.00 0.00 4.85
761 885 3.515286 GTCGATCTCCCGGACGCA 61.515 66.667 0.73 0.00 0.00 5.24
762 886 4.267503 GGTCGATCTCCCGGACGC 62.268 72.222 0.73 0.00 0.00 5.19
763 887 2.516460 AGGTCGATCTCCCGGACG 60.516 66.667 0.73 0.43 0.00 4.79
764 888 3.121019 CAGGTCGATCTCCCGGAC 58.879 66.667 0.73 0.00 0.00 4.79
765 889 2.833582 GCAGGTCGATCTCCCGGA 60.834 66.667 0.73 0.00 0.00 5.14
766 890 4.271816 CGCAGGTCGATCTCCCGG 62.272 72.222 0.00 0.00 41.67 5.73
767 891 4.933064 GCGCAGGTCGATCTCCCG 62.933 72.222 0.30 10.14 41.67 5.14
768 892 4.593864 GGCGCAGGTCGATCTCCC 62.594 72.222 10.83 0.00 41.67 4.30
769 893 3.781770 CTGGCGCAGGTCGATCTCC 62.782 68.421 10.83 0.00 41.67 3.71
770 894 2.279120 CTGGCGCAGGTCGATCTC 60.279 66.667 10.83 0.00 41.67 2.75
771 895 3.842923 CCTGGCGCAGGTCGATCT 61.843 66.667 10.83 0.00 45.82 2.75
783 907 1.302993 TTTACTTCACCCGCCTGGC 60.303 57.895 9.11 9.11 37.83 4.85
784 908 0.958876 GGTTTACTTCACCCGCCTGG 60.959 60.000 0.00 0.00 41.37 4.45
785 909 0.958876 GGGTTTACTTCACCCGCCTG 60.959 60.000 0.00 0.00 44.83 4.85
786 910 1.377612 GGGTTTACTTCACCCGCCT 59.622 57.895 0.00 0.00 44.83 5.52
787 911 3.991999 GGGTTTACTTCACCCGCC 58.008 61.111 0.00 0.00 44.83 6.13
792 916 1.958579 GGTTGGGTGGGTTTACTTCAC 59.041 52.381 0.00 0.00 0.00 3.18
793 917 1.133419 GGGTTGGGTGGGTTTACTTCA 60.133 52.381 0.00 0.00 0.00 3.02
794 918 1.133419 TGGGTTGGGTGGGTTTACTTC 60.133 52.381 0.00 0.00 0.00 3.01
795 919 0.935194 TGGGTTGGGTGGGTTTACTT 59.065 50.000 0.00 0.00 0.00 2.24
796 920 0.481128 CTGGGTTGGGTGGGTTTACT 59.519 55.000 0.00 0.00 0.00 2.24
797 921 1.183030 GCTGGGTTGGGTGGGTTTAC 61.183 60.000 0.00 0.00 0.00 2.01
798 922 1.154221 GCTGGGTTGGGTGGGTTTA 59.846 57.895 0.00 0.00 0.00 2.01
799 923 2.123033 GCTGGGTTGGGTGGGTTT 60.123 61.111 0.00 0.00 0.00 3.27
800 924 4.233558 GGCTGGGTTGGGTGGGTT 62.234 66.667 0.00 0.00 0.00 4.11
802 926 3.996621 ATGGCTGGGTTGGGTGGG 61.997 66.667 0.00 0.00 0.00 4.61
803 927 2.681064 CATGGCTGGGTTGGGTGG 60.681 66.667 0.00 0.00 0.00 4.61
804 928 2.681064 CCATGGCTGGGTTGGGTG 60.681 66.667 0.00 0.00 39.04 4.61
805 929 2.029892 TTTCCATGGCTGGGTTGGGT 62.030 55.000 6.96 0.00 43.34 4.51
806 930 0.835543 TTTTCCATGGCTGGGTTGGG 60.836 55.000 6.96 0.00 43.34 4.12
807 931 0.609662 CTTTTCCATGGCTGGGTTGG 59.390 55.000 6.96 0.00 43.34 3.77
808 932 0.037046 GCTTTTCCATGGCTGGGTTG 60.037 55.000 6.96 0.00 43.34 3.77
809 933 1.194121 GGCTTTTCCATGGCTGGGTT 61.194 55.000 6.96 0.00 43.34 4.11
810 934 1.610379 GGCTTTTCCATGGCTGGGT 60.610 57.895 6.96 0.00 43.34 4.51
811 935 1.610086 TGGCTTTTCCATGGCTGGG 60.610 57.895 6.96 0.00 43.34 4.45
812 936 4.116926 TGGCTTTTCCATGGCTGG 57.883 55.556 6.96 0.00 40.72 4.85
827 951 3.466791 AAGATGGAGCCGCCGATGG 62.467 63.158 0.00 0.00 40.66 3.51
828 952 2.109799 AAGATGGAGCCGCCGATG 59.890 61.111 0.00 0.00 40.66 3.84
829 953 2.109799 CAAGATGGAGCCGCCGAT 59.890 61.111 0.00 0.00 40.66 4.18
830 954 4.161295 CCAAGATGGAGCCGCCGA 62.161 66.667 0.00 0.00 40.96 5.54
836 960 1.000396 AACAGGGCCAAGATGGAGC 60.000 57.895 6.18 0.00 40.96 4.70
901 1032 1.674651 TAGCCGACACTCGCTGAGT 60.675 57.895 5.54 5.54 44.44 3.41
904 1036 2.566529 TGTAGCCGACACTCGCTG 59.433 61.111 0.00 0.00 38.82 5.18
919 1051 4.323562 GGACAAAGGCTAGTAATGAGGTGT 60.324 45.833 0.00 0.00 0.00 4.16
921 1053 3.118738 CGGACAAAGGCTAGTAATGAGGT 60.119 47.826 0.00 0.00 0.00 3.85
931 1063 0.618458 ATGGAAGCGGACAAAGGCTA 59.382 50.000 0.00 0.00 38.88 3.93
933 1065 1.680338 ATATGGAAGCGGACAAAGGC 58.320 50.000 0.00 0.00 0.00 4.35
935 1067 4.273480 CCACTTATATGGAAGCGGACAAAG 59.727 45.833 0.00 0.00 43.02 2.77
968 1106 1.399791 GCTGCAGGTTGTTAGATCAGC 59.600 52.381 17.12 0.00 38.62 4.26
972 1110 3.054802 AGCTAAGCTGCAGGTTGTTAGAT 60.055 43.478 35.13 23.08 37.57 1.98
973 1111 2.303022 AGCTAAGCTGCAGGTTGTTAGA 59.697 45.455 35.13 17.80 37.57 2.10
1002 1140 2.604914 GGAGTACATCAGCACATTCACG 59.395 50.000 0.00 0.00 0.00 4.35
1003 1141 2.604914 CGGAGTACATCAGCACATTCAC 59.395 50.000 0.00 0.00 0.00 3.18
1004 1142 2.892374 CGGAGTACATCAGCACATTCA 58.108 47.619 0.00 0.00 0.00 2.57
1017 1155 1.271656 ACCTGTACTTGTGCGGAGTAC 59.728 52.381 13.91 13.91 46.09 2.73
1018 1156 1.271379 CACCTGTACTTGTGCGGAGTA 59.729 52.381 0.00 0.00 0.00 2.59
1019 1157 0.033504 CACCTGTACTTGTGCGGAGT 59.966 55.000 0.00 0.00 0.00 3.85
1020 1158 0.317160 TCACCTGTACTTGTGCGGAG 59.683 55.000 9.60 0.00 32.51 4.63
1021 1159 0.973632 ATCACCTGTACTTGTGCGGA 59.026 50.000 9.60 0.00 32.51 5.54
1022 1160 1.066858 AGATCACCTGTACTTGTGCGG 60.067 52.381 9.60 0.00 32.51 5.69
1023 1161 2.370281 AGATCACCTGTACTTGTGCG 57.630 50.000 9.60 0.00 32.51 5.34
1024 1162 4.720649 TCTAGATCACCTGTACTTGTGC 57.279 45.455 9.60 0.00 32.51 4.57
1036 1174 2.025155 TCCACGCTCCTTCTAGATCAC 58.975 52.381 0.00 0.00 0.00 3.06
1047 1193 2.433318 GCTGTGAGTCCACGCTCC 60.433 66.667 0.00 0.00 46.06 4.70
1059 1205 1.743252 GAAAGGCGGAGGAGCTGTG 60.743 63.158 0.00 0.00 37.29 3.66
1062 1208 4.459089 GCGAAAGGCGGAGGAGCT 62.459 66.667 0.00 0.00 41.29 4.09
1128 1275 0.515127 CATCGTCTCGATCTCTCCCG 59.485 60.000 1.58 0.00 45.19 5.14
1394 1581 4.758251 TCCACCGCCGACAGCATG 62.758 66.667 0.00 0.00 44.04 4.06
1418 1605 3.240134 GAACACCCTGAGCCGCTCA 62.240 63.158 21.69 21.69 38.25 4.26
1508 1695 2.692368 TGGAGGTCCATGGAGGCC 60.692 66.667 16.81 14.33 42.01 5.19
1554 1741 4.204028 AACACTGCGGGGTGGCTT 62.204 61.111 0.00 0.00 41.09 4.35
1559 1746 1.227853 GAAGTCAACACTGCGGGGT 60.228 57.895 0.00 0.00 31.06 4.95
1620 1808 8.355913 TCGAGATTTAGTAGAGACGACTGTATA 58.644 37.037 0.00 0.00 0.00 1.47
1691 1884 3.508793 ACATGCTAATGCTGCTTGTTCTT 59.491 39.130 0.00 0.00 43.20 2.52
1693 1886 3.176708 CACATGCTAATGCTGCTTGTTC 58.823 45.455 0.00 0.00 43.20 3.18
1696 1889 1.135228 TGCACATGCTAATGCTGCTTG 60.135 47.619 5.31 0.00 42.55 4.01
1718 1911 6.500684 AGATCCGACTAACACGTAAAAGTA 57.499 37.500 0.00 0.00 0.00 2.24
1742 1935 2.821991 GTGTCTGGTCAACACTAGCT 57.178 50.000 0.00 0.00 42.93 3.32
1771 1964 1.400888 GCGATAGTGAGCTCGATCCAG 60.401 57.143 9.64 0.44 37.05 3.86
1789 1982 0.171679 TACACGTGGTCACCATAGCG 59.828 55.000 21.57 0.78 35.28 4.26
2199 2392 2.308690 AGTCTAGTAGATGGGTTCGGC 58.691 52.381 2.51 0.00 0.00 5.54
2211 2404 7.730672 TCTGAACTGGAGTAGTAGTCTAGTA 57.269 40.000 20.66 8.57 38.24 1.82
2212 2405 6.623979 TCTGAACTGGAGTAGTAGTCTAGT 57.376 41.667 16.13 16.13 40.49 2.57
2213 2406 6.037830 GCTTCTGAACTGGAGTAGTAGTCTAG 59.962 46.154 14.95 14.95 39.18 2.43
2214 2407 5.881443 GCTTCTGAACTGGAGTAGTAGTCTA 59.119 44.000 4.99 0.00 39.18 2.59
2215 2408 4.703093 GCTTCTGAACTGGAGTAGTAGTCT 59.297 45.833 4.99 0.00 39.18 3.24
2216 2409 4.142337 GGCTTCTGAACTGGAGTAGTAGTC 60.142 50.000 0.00 0.00 39.18 2.59
2217 2410 3.764972 GGCTTCTGAACTGGAGTAGTAGT 59.235 47.826 0.00 0.00 39.18 2.73
2218 2411 3.181495 CGGCTTCTGAACTGGAGTAGTAG 60.181 52.174 0.00 0.00 39.18 2.57
2219 2412 2.753452 CGGCTTCTGAACTGGAGTAGTA 59.247 50.000 0.00 0.00 39.18 1.82
2220 2413 1.546476 CGGCTTCTGAACTGGAGTAGT 59.454 52.381 0.00 0.00 42.89 2.73
2221 2414 1.134965 CCGGCTTCTGAACTGGAGTAG 60.135 57.143 10.50 0.00 33.88 2.57
2230 2423 1.378514 GGAATGCCCGGCTTCTGAA 60.379 57.895 11.61 0.00 0.00 3.02
2242 2435 0.972471 CCACCCAGGGAAAGGAATGC 60.972 60.000 14.54 0.00 0.00 3.56
2247 2440 2.283173 GTGCCACCCAGGGAAAGG 60.283 66.667 14.54 12.25 40.60 3.11
2248 2441 1.604593 CAGTGCCACCCAGGGAAAG 60.605 63.158 14.54 0.51 40.60 2.62
2249 2442 2.081787 TCAGTGCCACCCAGGGAAA 61.082 57.895 14.54 0.00 40.60 3.13
2250 2443 2.449518 TCAGTGCCACCCAGGGAA 60.450 61.111 14.54 0.00 40.60 3.97
2252 2445 3.569210 TGTCAGTGCCACCCAGGG 61.569 66.667 2.85 2.85 38.09 4.45
2256 2449 2.357517 CTCGTGTCAGTGCCACCC 60.358 66.667 0.00 0.00 0.00 4.61
2257 2450 2.357517 CCTCGTGTCAGTGCCACC 60.358 66.667 0.00 0.00 0.00 4.61
2258 2451 2.357517 CCCTCGTGTCAGTGCCAC 60.358 66.667 0.00 0.00 0.00 5.01
2260 2453 1.668151 GAACCCTCGTGTCAGTGCC 60.668 63.158 0.00 0.00 0.00 5.01
2261 2454 0.249911 AAGAACCCTCGTGTCAGTGC 60.250 55.000 0.00 0.00 0.00 4.40
2262 2455 1.502231 CAAGAACCCTCGTGTCAGTG 58.498 55.000 0.00 0.00 0.00 3.66
2263 2456 0.249911 GCAAGAACCCTCGTGTCAGT 60.250 55.000 0.00 0.00 33.96 3.41
2460 2653 4.899239 GAGGAGCCGGGCGATGTG 62.899 72.222 14.39 0.00 0.00 3.21
2485 2678 1.078637 GGGTTGAACGGAGGGTAGC 60.079 63.158 0.00 0.00 0.00 3.58
2579 2773 1.688197 ACCCAACCTGCATCAAAACAG 59.312 47.619 0.00 0.00 0.00 3.16
2764 2961 3.739300 ACGGTTTCATGAACGAACACTAG 59.261 43.478 21.19 11.49 39.22 2.57
2786 3079 2.342650 GCGGGAGTGTACCACGGTA 61.343 63.158 0.00 0.00 39.64 4.02
2826 3119 0.949105 CGCCGGTGTGTAAAAGCTCT 60.949 55.000 6.91 0.00 0.00 4.09
2873 3186 1.476845 TTGACCGCCTGCTCTAACCA 61.477 55.000 0.00 0.00 0.00 3.67
2881 3194 2.050077 GTTGCTTTGACCGCCTGC 60.050 61.111 0.00 0.00 0.00 4.85
2883 3196 2.110213 TCGTTGCTTTGACCGCCT 59.890 55.556 0.00 0.00 0.00 5.52
2941 3254 1.685148 CCATCTAGCAAGCCTTTCCC 58.315 55.000 0.00 0.00 0.00 3.97
2958 3271 6.287589 ACAAACCCGAATATTAAATTGCCA 57.712 33.333 0.00 0.00 0.00 4.92
2959 3272 8.138712 TCATACAAACCCGAATATTAAATTGCC 58.861 33.333 0.00 0.00 0.00 4.52
2972 3285 9.941325 TTAAAACTTACTATCATACAAACCCGA 57.059 29.630 0.00 0.00 0.00 5.14
3044 3357 2.555199 AGCACAAGACTCAACACACTC 58.445 47.619 0.00 0.00 0.00 3.51
3046 3359 4.092091 GCTATAGCACAAGACTCAACACAC 59.908 45.833 20.01 0.00 41.59 3.82
3053 3366 1.409427 ACCGGCTATAGCACAAGACTC 59.591 52.381 25.53 5.27 44.36 3.36
3057 3370 2.604046 AGAACCGGCTATAGCACAAG 57.396 50.000 25.53 12.92 44.36 3.16
3058 3371 4.682778 ATAAGAACCGGCTATAGCACAA 57.317 40.909 25.53 3.08 44.36 3.33
3059 3372 4.344102 AGAATAAGAACCGGCTATAGCACA 59.656 41.667 25.53 2.23 44.36 4.57
3060 3373 4.884247 AGAATAAGAACCGGCTATAGCAC 58.116 43.478 25.53 13.95 44.36 4.40
3061 3374 5.335426 CGTAGAATAAGAACCGGCTATAGCA 60.335 44.000 25.53 3.31 44.36 3.49
3062 3375 5.094134 CGTAGAATAAGAACCGGCTATAGC 58.906 45.833 16.78 16.78 41.14 2.97
3063 3376 5.638783 CCGTAGAATAAGAACCGGCTATAG 58.361 45.833 0.00 0.00 0.00 1.31
3064 3377 5.633830 CCGTAGAATAAGAACCGGCTATA 57.366 43.478 0.00 0.00 0.00 1.31
3065 3378 4.516365 CCGTAGAATAAGAACCGGCTAT 57.484 45.455 0.00 0.00 0.00 2.97
3066 3379 3.996150 CCGTAGAATAAGAACCGGCTA 57.004 47.619 0.00 0.00 0.00 3.93
3067 3380 2.884894 CCGTAGAATAAGAACCGGCT 57.115 50.000 0.00 0.00 0.00 5.52
3075 3388 6.371825 AGAAAGAAAACAGGCCGTAGAATAAG 59.628 38.462 0.00 0.00 0.00 1.73
3085 3398 3.078097 GGAGAGAGAAAGAAAACAGGCC 58.922 50.000 0.00 0.00 0.00 5.19
3089 3402 5.131142 AGTTGGAGGAGAGAGAAAGAAAACA 59.869 40.000 0.00 0.00 0.00 2.83
3090 3403 5.616270 AGTTGGAGGAGAGAGAAAGAAAAC 58.384 41.667 0.00 0.00 0.00 2.43
3095 3408 6.102897 TGTTTAGTTGGAGGAGAGAGAAAG 57.897 41.667 0.00 0.00 0.00 2.62
3096 3409 6.289064 GTTGTTTAGTTGGAGGAGAGAGAAA 58.711 40.000 0.00 0.00 0.00 2.52
3141 3454 8.428852 TGCAATAGGATTACATAAGCAGACTAA 58.571 33.333 0.00 0.00 0.00 2.24
3168 3496 6.642707 ATCCGTTAAGTTTGGTTGATCAAA 57.357 33.333 10.35 0.00 34.64 2.69
3180 3508 2.041216 AGGAGGCCAAATCCGTTAAGTT 59.959 45.455 5.01 0.00 42.02 2.66
3189 3517 1.664151 CGACGTTTAGGAGGCCAAATC 59.336 52.381 5.01 0.00 0.00 2.17
3461 3789 4.484026 AGAGTAGGACATGGGAGATGAT 57.516 45.455 0.00 0.00 0.00 2.45
3464 3792 3.208692 AGGAAGAGTAGGACATGGGAGAT 59.791 47.826 0.00 0.00 0.00 2.75
3518 3846 3.433740 GGTTTATCATGGACCTCACCTCC 60.434 52.174 0.00 0.00 0.00 4.30
3620 3953 2.338984 GAGGTGGAGTCGCACGTT 59.661 61.111 7.92 0.08 0.00 3.99
3666 4004 2.909006 AGGATCATGATCGTAGGGCAAT 59.091 45.455 25.45 3.84 38.69 3.56
3687 4025 9.764363 CTTGTATGCATCTTTATAGTGTTCCTA 57.236 33.333 0.19 0.00 0.00 2.94
3699 4037 5.760253 CCGACCTAATCTTGTATGCATCTTT 59.240 40.000 0.19 0.00 0.00 2.52
3719 4057 6.481954 AACTCAAAGTTGTAATGATCCGAC 57.518 37.500 0.00 0.00 37.00 4.79
3737 4076 8.462811 CACTAACTCTTCTTCAGCTATAACTCA 58.537 37.037 0.00 0.00 0.00 3.41
3744 4083 5.077564 TCCACACTAACTCTTCTTCAGCTA 58.922 41.667 0.00 0.00 0.00 3.32
3820 4159 4.902443 TCTATAGAGAGGTCGTGCTTTG 57.098 45.455 0.00 0.00 0.00 2.77
3838 4177 6.433093 TGTGAAGCCTATACGCTCATAATCTA 59.567 38.462 0.00 0.00 38.44 1.98
3863 4202 2.151202 ACGATGAAGCGTTGGTGAATT 58.849 42.857 0.00 0.00 42.71 2.17
3868 4207 0.670546 CTGGACGATGAAGCGTTGGT 60.671 55.000 0.00 0.00 45.72 3.67
3880 4219 2.163010 GGTGACGATTAACTCTGGACGA 59.837 50.000 0.00 0.00 0.00 4.20
3915 4254 0.038159 CGGTGCGGTTCTCTTCTTCT 60.038 55.000 0.00 0.00 0.00 2.85
3916 4255 1.014564 CCGGTGCGGTTCTCTTCTTC 61.015 60.000 0.00 0.00 42.73 2.87
3917 4256 1.004918 CCGGTGCGGTTCTCTTCTT 60.005 57.895 0.00 0.00 42.73 2.52
3918 4257 2.657237 CCGGTGCGGTTCTCTTCT 59.343 61.111 0.00 0.00 42.73 2.85
3919 4258 2.434359 CCCGGTGCGGTTCTCTTC 60.434 66.667 0.00 0.00 46.80 2.87
3920 4259 4.016706 CCCCGGTGCGGTTCTCTT 62.017 66.667 0.00 0.00 46.80 2.85
3922 4261 2.453379 TTAACCCCGGTGCGGTTCTC 62.453 60.000 15.88 0.00 46.80 2.87
3923 4262 1.844544 ATTAACCCCGGTGCGGTTCT 61.845 55.000 15.88 4.07 46.80 3.01
3924 4263 1.371337 GATTAACCCCGGTGCGGTTC 61.371 60.000 15.88 0.46 46.80 3.62
3925 4264 1.377594 GATTAACCCCGGTGCGGTT 60.378 57.895 16.52 16.52 46.80 4.44
3926 4265 2.269883 GATTAACCCCGGTGCGGT 59.730 61.111 0.00 0.00 46.80 5.68
3928 4267 2.125431 ACGATTAACCCCGGTGCG 60.125 61.111 0.00 0.00 0.00 5.34
3929 4268 1.078988 TGACGATTAACCCCGGTGC 60.079 57.895 0.00 0.00 0.00 5.01
3930 4269 0.741927 GGTGACGATTAACCCCGGTG 60.742 60.000 0.00 0.00 0.00 4.94
3931 4270 1.193462 TGGTGACGATTAACCCCGGT 61.193 55.000 0.00 0.00 35.44 5.28
3932 4271 0.461339 CTGGTGACGATTAACCCCGG 60.461 60.000 0.00 0.00 35.44 5.73
3933 4272 0.461339 CCTGGTGACGATTAACCCCG 60.461 60.000 0.00 0.00 35.44 5.73
3934 4273 0.107361 CCCTGGTGACGATTAACCCC 60.107 60.000 0.00 0.00 35.44 4.95
3935 4274 0.906775 TCCCTGGTGACGATTAACCC 59.093 55.000 0.00 0.00 35.44 4.11
3936 4275 2.773993 TTCCCTGGTGACGATTAACC 57.226 50.000 0.00 0.00 36.96 2.85
3937 4276 4.814771 CCTAATTCCCTGGTGACGATTAAC 59.185 45.833 0.00 0.00 0.00 2.01
3938 4277 4.141574 CCCTAATTCCCTGGTGACGATTAA 60.142 45.833 0.00 0.00 0.00 1.40
3939 4278 3.389983 CCCTAATTCCCTGGTGACGATTA 59.610 47.826 0.00 0.00 0.00 1.75
3940 4279 2.172717 CCCTAATTCCCTGGTGACGATT 59.827 50.000 0.00 0.00 0.00 3.34
3941 4280 1.768870 CCCTAATTCCCTGGTGACGAT 59.231 52.381 0.00 0.00 0.00 3.73
3942 4281 1.200519 CCCTAATTCCCTGGTGACGA 58.799 55.000 0.00 0.00 0.00 4.20
3943 4282 0.180406 CCCCTAATTCCCTGGTGACG 59.820 60.000 0.00 0.00 0.00 4.35
3944 4283 1.490910 CTCCCCTAATTCCCTGGTGAC 59.509 57.143 0.00 0.00 0.00 3.67
3945 4284 1.368203 TCTCCCCTAATTCCCTGGTGA 59.632 52.381 0.00 0.00 0.00 4.02
3946 4285 1.893315 TCTCCCCTAATTCCCTGGTG 58.107 55.000 0.00 0.00 0.00 4.17
3947 4286 2.047296 TCTTCTCCCCTAATTCCCTGGT 59.953 50.000 0.00 0.00 0.00 4.00
3948 4287 2.776665 TCTTCTCCCCTAATTCCCTGG 58.223 52.381 0.00 0.00 0.00 4.45
3949 4288 4.040755 TCTTCTTCTCCCCTAATTCCCTG 58.959 47.826 0.00 0.00 0.00 4.45
3950 4289 4.015163 TCTCTTCTTCTCCCCTAATTCCCT 60.015 45.833 0.00 0.00 0.00 4.20
3951 4290 4.299485 TCTCTTCTTCTCCCCTAATTCCC 58.701 47.826 0.00 0.00 0.00 3.97
3952 4291 5.396996 GGTTCTCTTCTTCTCCCCTAATTCC 60.397 48.000 0.00 0.00 0.00 3.01
3953 4292 5.676552 GGTTCTCTTCTTCTCCCCTAATTC 58.323 45.833 0.00 0.00 0.00 2.17
3954 4293 4.162509 CGGTTCTCTTCTTCTCCCCTAATT 59.837 45.833 0.00 0.00 0.00 1.40
3955 4294 3.707102 CGGTTCTCTTCTTCTCCCCTAAT 59.293 47.826 0.00 0.00 0.00 1.73
3956 4295 3.097614 CGGTTCTCTTCTTCTCCCCTAA 58.902 50.000 0.00 0.00 0.00 2.69
3957 4296 2.736347 CGGTTCTCTTCTTCTCCCCTA 58.264 52.381 0.00 0.00 0.00 3.53
3958 4297 1.562783 CGGTTCTCTTCTTCTCCCCT 58.437 55.000 0.00 0.00 0.00 4.79
3959 4298 0.108089 GCGGTTCTCTTCTTCTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
3960 4299 0.608640 TGCGGTTCTCTTCTTCTCCC 59.391 55.000 0.00 0.00 0.00 4.30
3961 4300 1.673329 GGTGCGGTTCTCTTCTTCTCC 60.673 57.143 0.00 0.00 0.00 3.71
3982 4321 3.418684 TTCTTGTTCCTACAGAAGCCC 57.581 47.619 0.00 0.00 34.29 5.19
4014 4359 6.603997 GTCCCTCTCTTGTTCTAGACTTGATA 59.396 42.308 0.00 0.00 0.00 2.15
4027 4372 0.252467 CCCCTCTGTCCCTCTCTTGT 60.252 60.000 0.00 0.00 0.00 3.16
4061 4406 6.350103 CCCCTAGAGATACAAGTTTTCTTCC 58.650 44.000 0.00 0.00 38.17 3.46
4067 4412 3.200165 GCACCCCCTAGAGATACAAGTTT 59.800 47.826 0.00 0.00 0.00 2.66
4087 4432 5.042600 ACCTATATATACATGAGGAGGGGCA 60.043 44.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.