Multiple sequence alignment - TraesCS7A01G450500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G450500 chr7A 100.000 5257 0 0 1 5257 644115681 644110425 0.000000e+00 9708
1 TraesCS7A01G450500 chr7A 94.324 740 35 5 4523 5257 718514351 718515088 0.000000e+00 1127
2 TraesCS7A01G450500 chr7B 94.212 4354 180 34 1 4308 607589190 607584863 0.000000e+00 6578
3 TraesCS7A01G450500 chr7D 93.849 4357 204 39 1 4323 559451544 559447218 0.000000e+00 6503
4 TraesCS7A01G450500 chr1D 95.759 731 27 2 4531 5257 111513221 111512491 0.000000e+00 1175
5 TraesCS7A01G450500 chr1D 81.579 456 71 7 3318 3768 208427101 208426654 1.080000e-96 364
6 TraesCS7A01G450500 chr2D 95.748 729 27 2 4533 5257 605181981 605182709 0.000000e+00 1171
7 TraesCS7A01G450500 chr5A 95.479 730 27 3 4533 5257 299619563 299620291 0.000000e+00 1160
8 TraesCS7A01G450500 chr5A 94.816 733 30 5 4533 5257 522364981 522364249 0.000000e+00 1136
9 TraesCS7A01G450500 chr6D 95.342 730 29 3 4532 5257 368116737 368117465 0.000000e+00 1155
10 TraesCS7A01G450500 chr5D 95.062 729 33 1 4532 5257 565830028 565829300 0.000000e+00 1144
11 TraesCS7A01G450500 chr5D 94.679 733 32 4 4529 5257 439300350 439299621 0.000000e+00 1131
12 TraesCS7A01G450500 chr5D 94.672 732 32 5 4531 5257 528816070 528815341 0.000000e+00 1129
13 TraesCS7A01G450500 chr5D 77.508 329 56 12 3863 4184 345086900 345087217 1.160000e-41 182
14 TraesCS7A01G450500 chr2A 83.402 241 34 4 3318 3557 197541480 197541715 8.860000e-53 219
15 TraesCS7A01G450500 chr4D 78.750 160 28 6 4057 4213 416867066 416867222 9.310000e-18 102
16 TraesCS7A01G450500 chr4A 78.616 159 28 6 4058 4213 47286756 47286601 3.350000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G450500 chr7A 644110425 644115681 5256 True 9708 9708 100.000 1 5257 1 chr7A.!!$R1 5256
1 TraesCS7A01G450500 chr7A 718514351 718515088 737 False 1127 1127 94.324 4523 5257 1 chr7A.!!$F1 734
2 TraesCS7A01G450500 chr7B 607584863 607589190 4327 True 6578 6578 94.212 1 4308 1 chr7B.!!$R1 4307
3 TraesCS7A01G450500 chr7D 559447218 559451544 4326 True 6503 6503 93.849 1 4323 1 chr7D.!!$R1 4322
4 TraesCS7A01G450500 chr1D 111512491 111513221 730 True 1175 1175 95.759 4531 5257 1 chr1D.!!$R1 726
5 TraesCS7A01G450500 chr2D 605181981 605182709 728 False 1171 1171 95.748 4533 5257 1 chr2D.!!$F1 724
6 TraesCS7A01G450500 chr5A 299619563 299620291 728 False 1160 1160 95.479 4533 5257 1 chr5A.!!$F1 724
7 TraesCS7A01G450500 chr5A 522364249 522364981 732 True 1136 1136 94.816 4533 5257 1 chr5A.!!$R1 724
8 TraesCS7A01G450500 chr6D 368116737 368117465 728 False 1155 1155 95.342 4532 5257 1 chr6D.!!$F1 725
9 TraesCS7A01G450500 chr5D 565829300 565830028 728 True 1144 1144 95.062 4532 5257 1 chr5D.!!$R3 725
10 TraesCS7A01G450500 chr5D 439299621 439300350 729 True 1131 1131 94.679 4529 5257 1 chr5D.!!$R1 728
11 TraesCS7A01G450500 chr5D 528815341 528816070 729 True 1129 1129 94.672 4531 5257 1 chr5D.!!$R2 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 89 1.065998 TGCTACATGTGCTGATCTGCA 60.066 47.619 21.87 21.87 41.05 4.41 F
1230 1277 0.396435 ACGAGGGTGCTGTCAATGAA 59.604 50.000 0.00 0.00 0.00 2.57 F
1279 1326 0.607217 TCTCGCAAGTCGACCTGGTA 60.607 55.000 15.68 0.00 43.16 3.25 F
3134 3186 0.950836 CCAACTTTGATGTGCGGACA 59.049 50.000 13.59 13.59 36.22 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1777 0.968405 AAATGCACAAGCCGTTCCAT 59.032 45.000 0.00 0.00 41.13 3.41 R
2987 3039 0.842635 CCTATGAGGCCTCCTTGCTT 59.157 55.000 29.95 10.04 31.76 3.91 R
3234 3286 4.033358 CCTACAAGTTTCTGCATAGAAGCG 59.967 45.833 0.00 0.00 45.50 4.68 R
4721 4788 0.325203 TCGATCCACCACCTCCATCA 60.325 55.000 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 89 1.065998 TGCTACATGTGCTGATCTGCA 60.066 47.619 21.87 21.87 41.05 4.41
82 99 2.216898 GCTGATCTGCACTACATTCCC 58.783 52.381 18.67 0.00 0.00 3.97
83 100 2.420547 GCTGATCTGCACTACATTCCCA 60.421 50.000 18.67 0.00 0.00 4.37
95 112 1.985159 ACATTCCCAGGCAGTTAGTCA 59.015 47.619 0.00 0.00 0.00 3.41
97 114 1.729586 TTCCCAGGCAGTTAGTCAGT 58.270 50.000 0.00 0.00 0.00 3.41
196 219 1.538075 AGTTGTTAAATCGTTGCCCGG 59.462 47.619 0.00 0.00 37.11 5.73
290 313 5.684704 TGTTGAGCCCCTGATCTTTATTAG 58.315 41.667 0.00 0.00 0.00 1.73
308 332 7.682787 TTATTAGGATTCTTGCCTCTCTTCT 57.317 36.000 0.00 0.00 36.96 2.85
324 348 6.017852 CCTCTCTTCTTTATAATTCGTTGGGC 60.018 42.308 0.00 0.00 0.00 5.36
455 487 6.472163 GTCTATTTTATTGGACAATTGCCGTG 59.528 38.462 5.05 0.00 32.50 4.94
486 518 7.557358 TCACTTAGCACCATGTCAATGATAAAT 59.443 33.333 0.00 0.00 35.67 1.40
513 545 2.867109 AATATCTTGCGGGGATCAGG 57.133 50.000 0.00 0.00 0.00 3.86
514 546 1.734655 ATATCTTGCGGGGATCAGGT 58.265 50.000 0.00 0.00 0.00 4.00
627 669 3.935818 TCTCAGACCGGAGTAGATTCT 57.064 47.619 9.46 0.00 36.30 2.40
629 671 3.200165 TCTCAGACCGGAGTAGATTCTGA 59.800 47.826 9.46 13.53 40.26 3.27
630 672 3.948473 CTCAGACCGGAGTAGATTCTGAA 59.052 47.826 9.46 0.00 41.58 3.02
631 673 4.341487 TCAGACCGGAGTAGATTCTGAAA 58.659 43.478 9.46 0.00 39.74 2.69
632 674 4.956700 TCAGACCGGAGTAGATTCTGAAAT 59.043 41.667 9.46 0.00 39.74 2.17
633 675 5.067936 TCAGACCGGAGTAGATTCTGAAATC 59.932 44.000 9.46 0.00 39.74 2.17
634 676 4.342665 AGACCGGAGTAGATTCTGAAATCC 59.657 45.833 9.46 0.00 41.97 3.01
635 677 3.388350 ACCGGAGTAGATTCTGAAATCCC 59.612 47.826 9.46 0.00 41.97 3.85
684 726 2.278245 TGGTCCATGAATCCTGGAGTT 58.722 47.619 7.53 0.00 43.33 3.01
695 737 7.257790 TGAATCCTGGAGTTTGAGATTCTTA 57.742 36.000 1.52 0.00 42.06 2.10
799 841 2.665165 AGGTCCAGCTGACAGAGATAG 58.335 52.381 17.39 0.00 46.38 2.08
823 866 3.520623 CCTATTTGGCCTCCTTGGG 57.479 57.895 3.32 0.00 36.00 4.12
878 921 2.235898 AGAGACAAGTGAAGCTCATCCC 59.764 50.000 0.00 0.00 0.00 3.85
894 937 4.722700 CCCCAGTTGCCTCCCACG 62.723 72.222 0.00 0.00 0.00 4.94
924 967 7.340232 ACCAACTCGCCGAGGTTTATATATATA 59.660 37.037 19.61 0.00 33.35 0.86
925 968 8.358148 CCAACTCGCCGAGGTTTATATATATAT 58.642 37.037 19.61 10.10 33.35 0.86
988 1034 6.870965 ACATGAGTAGTTAGAGCTTCAAACTG 59.129 38.462 15.59 5.33 35.23 3.16
1014 1060 0.606401 AAGCCATGGGTGTCTTGACG 60.606 55.000 19.09 0.00 0.00 4.35
1041 1087 3.282021 TCATATCCTTGTCAGCTTTGCC 58.718 45.455 0.00 0.00 0.00 4.52
1139 1185 3.634568 CAAGTATTGCGAAAACACCCA 57.365 42.857 0.00 0.00 40.39 4.51
1230 1277 0.396435 ACGAGGGTGCTGTCAATGAA 59.604 50.000 0.00 0.00 0.00 2.57
1275 1322 1.671845 GATACTCTCGCAAGTCGACCT 59.328 52.381 13.01 0.00 43.16 3.85
1279 1326 0.607217 TCTCGCAAGTCGACCTGGTA 60.607 55.000 15.68 0.00 43.16 3.25
1408 1455 1.209128 CCGTTGATCACTACCATCGC 58.791 55.000 0.00 0.00 0.00 4.58
1420 1467 4.097437 CACTACCATCGCTACAAGGTAAGA 59.903 45.833 0.00 0.00 36.28 2.10
1448 1495 7.936584 ACCAATCAATCTCTTTTTCGTTTACA 58.063 30.769 0.00 0.00 0.00 2.41
1671 1722 1.069204 TGCACTCTTGAGTCCTGACAC 59.931 52.381 0.00 0.00 0.00 3.67
1693 1744 3.448301 CCTGATAAAATTTGCCTGCCTCA 59.552 43.478 0.00 0.00 0.00 3.86
1881 1932 8.974060 TCAAACTACAAATCCACTTTTCTACT 57.026 30.769 0.00 0.00 0.00 2.57
1891 1942 4.286032 TCCACTTTTCTACTAGCATGGTGT 59.714 41.667 7.89 6.45 0.00 4.16
1906 1957 7.495135 AGCATGGTGTTTCAAAAATTAAAGG 57.505 32.000 0.00 0.00 0.00 3.11
1949 2000 9.206690 TCTAAGGTTATTCTGAATCTGAGATGT 57.793 33.333 6.10 0.00 23.93 3.06
2190 2241 3.126831 CGCATCTTCCCAAGTATGTCTC 58.873 50.000 0.00 0.00 0.00 3.36
2234 2285 9.847224 TTATATTTATGTTCTTCACTCTTCCCC 57.153 33.333 0.00 0.00 0.00 4.81
2308 2359 8.653191 TGAAGAAGGGTTGAGTTACTATAACAA 58.347 33.333 12.02 0.00 0.00 2.83
2397 2448 4.098501 GCAGCTGCCTACTTCCATTTTTAT 59.901 41.667 28.76 0.00 34.31 1.40
2586 2638 5.005740 AGCTTTCTTGCACAATCTATGTCA 58.994 37.500 0.00 0.00 41.46 3.58
2667 2719 2.504367 ACACAGGGAGGATTTTGTTCG 58.496 47.619 0.00 0.00 0.00 3.95
2723 2775 1.002430 GAGTGAAGCACTGGATCACCA 59.998 52.381 4.60 0.00 45.44 4.17
2764 2816 4.291540 TGCAATTGACGGCTATGATTTC 57.708 40.909 10.34 0.00 0.00 2.17
2812 2864 9.685276 TGTTCCATTATATCTCATTTGTTCTGT 57.315 29.630 0.00 0.00 0.00 3.41
2938 2990 5.449588 CCATTGCAAGCACATCCTTAAGTAG 60.450 44.000 4.94 0.00 0.00 2.57
2973 3025 6.857964 AGAAAAGAAATGAACGCTGTTATGTG 59.142 34.615 0.00 0.00 0.00 3.21
3122 3174 6.597562 TGGTGAGACAATAAGTACCAACTTT 58.402 36.000 0.00 0.00 43.60 2.66
3123 3175 6.485313 TGGTGAGACAATAAGTACCAACTTTG 59.515 38.462 0.00 0.00 43.60 2.77
3124 3176 6.708949 GGTGAGACAATAAGTACCAACTTTGA 59.291 38.462 0.00 0.00 43.60 2.69
3125 3177 7.390718 GGTGAGACAATAAGTACCAACTTTGAT 59.609 37.037 0.00 0.00 43.60 2.57
3126 3178 8.230486 GTGAGACAATAAGTACCAACTTTGATG 58.770 37.037 0.00 0.00 43.60 3.07
3127 3179 7.936847 TGAGACAATAAGTACCAACTTTGATGT 59.063 33.333 0.00 0.67 43.60 3.06
3128 3180 8.099364 AGACAATAAGTACCAACTTTGATGTG 57.901 34.615 0.00 0.00 43.60 3.21
3129 3181 6.677913 ACAATAAGTACCAACTTTGATGTGC 58.322 36.000 0.00 0.00 43.60 4.57
3130 3182 3.896648 AAGTACCAACTTTGATGTGCG 57.103 42.857 0.00 0.00 43.60 5.34
3132 3184 2.147958 GTACCAACTTTGATGTGCGGA 58.852 47.619 0.00 0.00 0.00 5.54
3133 3185 0.951558 ACCAACTTTGATGTGCGGAC 59.048 50.000 0.00 0.00 0.00 4.79
3134 3186 0.950836 CCAACTTTGATGTGCGGACA 59.049 50.000 13.59 13.59 36.22 4.02
3135 3187 1.541147 CCAACTTTGATGTGCGGACAT 59.459 47.619 23.41 23.41 46.01 3.06
3234 3286 0.394625 TAATGTTTGGCCGCTACCCC 60.395 55.000 0.00 0.00 0.00 4.95
3273 3325 2.978824 GGCGACAGGCTACCTCAA 59.021 61.111 0.00 0.00 42.94 3.02
3281 3333 4.142816 CGACAGGCTACCTCAATTTTCAAG 60.143 45.833 0.00 0.00 0.00 3.02
3282 3334 4.729868 ACAGGCTACCTCAATTTTCAAGT 58.270 39.130 0.00 0.00 0.00 3.16
3464 3516 8.915057 ATGAAGATATCACAAACCTCCTAATG 57.085 34.615 5.32 0.00 41.93 1.90
3481 3533 7.987458 CCTCCTAATGCATTTTCAGTCTTACTA 59.013 37.037 18.75 0.00 0.00 1.82
3490 3542 7.387948 GCATTTTCAGTCTTACTAACTTCCTCA 59.612 37.037 0.00 0.00 0.00 3.86
3492 3544 5.979288 TCAGTCTTACTAACTTCCTCACC 57.021 43.478 0.00 0.00 0.00 4.02
3499 3551 0.739462 TAACTTCCTCACCGCATGCG 60.739 55.000 32.60 32.60 39.44 4.73
3586 3641 6.522054 TCTCTAAACTTTCGTTGGTCATCTT 58.478 36.000 0.00 0.00 32.65 2.40
3587 3642 7.663827 TCTCTAAACTTTCGTTGGTCATCTTA 58.336 34.615 0.00 0.00 32.65 2.10
3753 3808 2.432510 ACTGAGAATGGTAGGTAGCTGC 59.567 50.000 4.27 2.48 0.00 5.25
3754 3809 1.409064 TGAGAATGGTAGGTAGCTGCG 59.591 52.381 4.27 0.00 0.00 5.18
3760 3815 0.464452 GGTAGGTAGCTGCGGATTGT 59.536 55.000 4.27 0.00 0.00 2.71
3779 3836 4.260139 TGTACTGTTGGCAGACGATAAA 57.740 40.909 1.30 0.00 45.28 1.40
3780 3837 4.242475 TGTACTGTTGGCAGACGATAAAG 58.758 43.478 1.30 0.00 45.28 1.85
3781 3838 3.678056 ACTGTTGGCAGACGATAAAGA 57.322 42.857 1.30 0.00 45.28 2.52
3782 3839 4.207891 ACTGTTGGCAGACGATAAAGAT 57.792 40.909 1.30 0.00 45.28 2.40
3786 3843 6.016276 ACTGTTGGCAGACGATAAAGATTTTT 60.016 34.615 1.30 0.00 45.28 1.94
3788 3845 6.206634 TGTTGGCAGACGATAAAGATTTTTCT 59.793 34.615 0.00 0.00 0.00 2.52
3793 3850 6.963805 GCAGACGATAAAGATTTTTCTCCTTG 59.036 38.462 0.00 0.00 0.00 3.61
3811 3868 5.491070 TCCTTGGATAAACAGTCAGTGATG 58.509 41.667 0.00 0.00 0.00 3.07
3942 4003 5.903010 TGTCCAACCTCCTAGATGCTATAAA 59.097 40.000 0.00 0.00 0.00 1.40
3945 4006 7.232941 GTCCAACCTCCTAGATGCTATAAAGTA 59.767 40.741 0.00 0.00 0.00 2.24
3948 4009 8.861086 CAACCTCCTAGATGCTATAAAGTAAGA 58.139 37.037 0.00 0.00 0.00 2.10
3966 4027 2.693069 AGATTTCAACTCTCTGTGCCG 58.307 47.619 0.00 0.00 0.00 5.69
3968 4029 2.154854 TTTCAACTCTCTGTGCCGAG 57.845 50.000 0.00 0.00 0.00 4.63
3969 4030 1.040646 TTCAACTCTCTGTGCCGAGT 58.959 50.000 0.00 0.00 41.97 4.18
3970 4031 0.315251 TCAACTCTCTGTGCCGAGTG 59.685 55.000 0.00 0.00 40.18 3.51
3989 4051 3.117888 AGTGAGAACTGAACCACCAACAT 60.118 43.478 0.00 0.00 0.00 2.71
3993 4055 0.108585 ACTGAACCACCAACATCGCT 59.891 50.000 0.00 0.00 0.00 4.93
4016 4078 4.406649 TGATGATCATCACCTGTTGAGCTA 59.593 41.667 30.27 6.84 42.42 3.32
4017 4079 4.128925 TGATCATCACCTGTTGAGCTAC 57.871 45.455 0.00 0.00 37.77 3.58
4218 4280 1.668151 GTCGAGTGGTTCACCCAGC 60.668 63.158 0.00 0.00 46.45 4.85
4223 4285 0.109342 AGTGGTTCACCCAGCTTCTG 59.891 55.000 0.00 0.00 46.45 3.02
4275 4337 7.817478 TCATGTAGATAACAAACAGTACAGTGG 59.183 37.037 0.00 0.00 42.70 4.00
4289 4351 1.202533 ACAGTGGTTCTTCAGTCACCG 60.203 52.381 0.00 0.00 32.71 4.94
4305 4367 2.746904 TCACCGTTCCAATTGTGCATAG 59.253 45.455 4.43 0.00 0.00 2.23
4306 4368 2.487762 CACCGTTCCAATTGTGCATAGT 59.512 45.455 4.43 0.00 0.00 2.12
4308 4370 4.155099 CACCGTTCCAATTGTGCATAGTTA 59.845 41.667 4.43 0.00 0.00 2.24
4309 4371 4.155280 ACCGTTCCAATTGTGCATAGTTAC 59.845 41.667 4.43 0.00 0.00 2.50
4310 4372 4.438200 CCGTTCCAATTGTGCATAGTTACC 60.438 45.833 4.43 0.00 0.00 2.85
4311 4373 4.155099 CGTTCCAATTGTGCATAGTTACCA 59.845 41.667 4.43 0.00 0.00 3.25
4312 4374 5.163663 CGTTCCAATTGTGCATAGTTACCAT 60.164 40.000 4.43 0.00 0.00 3.55
4313 4375 6.037720 CGTTCCAATTGTGCATAGTTACCATA 59.962 38.462 4.43 0.00 0.00 2.74
4314 4376 7.255104 CGTTCCAATTGTGCATAGTTACCATAT 60.255 37.037 4.43 0.00 0.00 1.78
4315 4377 9.062524 GTTCCAATTGTGCATAGTTACCATATA 57.937 33.333 4.43 0.00 0.00 0.86
4316 4378 8.615878 TCCAATTGTGCATAGTTACCATATAC 57.384 34.615 4.43 0.00 0.00 1.47
4317 4379 8.214364 TCCAATTGTGCATAGTTACCATATACA 58.786 33.333 4.43 0.00 0.00 2.29
4318 4380 8.289618 CCAATTGTGCATAGTTACCATATACAC 58.710 37.037 4.43 0.00 30.64 2.90
4319 4381 8.835439 CAATTGTGCATAGTTACCATATACACA 58.165 33.333 0.00 0.00 35.89 3.72
4320 4382 7.780008 TTGTGCATAGTTACCATATACACAC 57.220 36.000 0.00 0.00 36.89 3.82
4321 4383 6.879400 TGTGCATAGTTACCATATACACACA 58.121 36.000 0.00 0.00 33.83 3.72
4322 4384 7.505258 TGTGCATAGTTACCATATACACACAT 58.495 34.615 0.00 0.00 33.83 3.21
4323 4385 7.655732 TGTGCATAGTTACCATATACACACATC 59.344 37.037 0.00 0.00 33.83 3.06
4324 4386 7.117812 GTGCATAGTTACCATATACACACATCC 59.882 40.741 0.00 0.00 30.46 3.51
4325 4387 6.310467 GCATAGTTACCATATACACACATCCG 59.690 42.308 0.00 0.00 0.00 4.18
4326 4388 5.864418 AGTTACCATATACACACATCCGT 57.136 39.130 0.00 0.00 0.00 4.69
4327 4389 6.964807 AGTTACCATATACACACATCCGTA 57.035 37.500 0.00 0.00 0.00 4.02
4328 4390 6.742109 AGTTACCATATACACACATCCGTAC 58.258 40.000 0.00 0.00 0.00 3.67
4329 4391 6.321945 AGTTACCATATACACACATCCGTACA 59.678 38.462 0.00 0.00 0.00 2.90
4330 4392 5.801531 ACCATATACACACATCCGTACAT 57.198 39.130 0.00 0.00 0.00 2.29
4331 4393 6.904463 ACCATATACACACATCCGTACATA 57.096 37.500 0.00 0.00 0.00 2.29
4332 4394 6.684686 ACCATATACACACATCCGTACATAC 58.315 40.000 0.00 0.00 0.00 2.39
4333 4395 6.097356 CCATATACACACATCCGTACATACC 58.903 44.000 0.00 0.00 0.00 2.73
4334 4396 6.071560 CCATATACACACATCCGTACATACCT 60.072 42.308 0.00 0.00 0.00 3.08
4335 4397 5.864418 ATACACACATCCGTACATACCTT 57.136 39.130 0.00 0.00 0.00 3.50
4336 4398 6.964807 ATACACACATCCGTACATACCTTA 57.035 37.500 0.00 0.00 0.00 2.69
4337 4399 5.864418 ACACACATCCGTACATACCTTAT 57.136 39.130 0.00 0.00 0.00 1.73
4338 4400 6.229936 ACACACATCCGTACATACCTTATT 57.770 37.500 0.00 0.00 0.00 1.40
4339 4401 7.350744 ACACACATCCGTACATACCTTATTA 57.649 36.000 0.00 0.00 0.00 0.98
4340 4402 7.431249 ACACACATCCGTACATACCTTATTAG 58.569 38.462 0.00 0.00 0.00 1.73
4342 4404 6.779049 ACACATCCGTACATACCTTATTAGGA 59.221 38.462 4.40 0.00 45.05 2.94
4343 4405 7.039923 ACACATCCGTACATACCTTATTAGGAG 60.040 40.741 4.40 0.00 45.05 3.69
4344 4406 6.436532 ACATCCGTACATACCTTATTAGGAGG 59.563 42.308 4.40 0.00 45.05 4.30
4345 4407 4.768968 TCCGTACATACCTTATTAGGAGGC 59.231 45.833 4.40 0.00 45.05 4.70
4346 4408 4.525487 CCGTACATACCTTATTAGGAGGCA 59.475 45.833 4.40 0.00 45.05 4.75
4347 4409 5.011329 CCGTACATACCTTATTAGGAGGCAA 59.989 44.000 4.40 0.00 45.05 4.52
4348 4410 6.463331 CCGTACATACCTTATTAGGAGGCAAA 60.463 42.308 4.40 0.00 45.05 3.68
4349 4411 6.987992 CGTACATACCTTATTAGGAGGCAAAA 59.012 38.462 4.40 0.00 45.05 2.44
4350 4412 7.660208 CGTACATACCTTATTAGGAGGCAAAAT 59.340 37.037 4.40 0.00 45.05 1.82
4351 4413 9.350951 GTACATACCTTATTAGGAGGCAAAATT 57.649 33.333 4.40 0.00 45.05 1.82
4352 4414 8.237811 ACATACCTTATTAGGAGGCAAAATTG 57.762 34.615 4.40 0.00 45.05 2.32
4353 4415 7.839200 ACATACCTTATTAGGAGGCAAAATTGT 59.161 33.333 4.40 0.00 45.05 2.71
4354 4416 9.349713 CATACCTTATTAGGAGGCAAAATTGTA 57.650 33.333 4.40 0.00 45.05 2.41
4355 4417 9.930158 ATACCTTATTAGGAGGCAAAATTGTAA 57.070 29.630 4.40 0.00 45.05 2.41
4356 4418 8.063200 ACCTTATTAGGAGGCAAAATTGTAAC 57.937 34.615 4.40 0.00 45.05 2.50
4357 4419 7.893833 ACCTTATTAGGAGGCAAAATTGTAACT 59.106 33.333 4.40 0.00 45.05 2.24
4358 4420 8.190784 CCTTATTAGGAGGCAAAATTGTAACTG 58.809 37.037 0.00 0.00 45.05 3.16
4359 4421 5.975693 TTAGGAGGCAAAATTGTAACTGG 57.024 39.130 0.00 0.00 0.00 4.00
4360 4422 4.112634 AGGAGGCAAAATTGTAACTGGA 57.887 40.909 0.00 0.00 0.00 3.86
4361 4423 4.082125 AGGAGGCAAAATTGTAACTGGAG 58.918 43.478 0.00 0.00 0.00 3.86
4362 4424 4.079253 GGAGGCAAAATTGTAACTGGAGA 58.921 43.478 0.00 0.00 0.00 3.71
4363 4425 4.522789 GGAGGCAAAATTGTAACTGGAGAA 59.477 41.667 0.00 0.00 0.00 2.87
4364 4426 5.185828 GGAGGCAAAATTGTAACTGGAGAAT 59.814 40.000 0.00 0.00 0.00 2.40
4365 4427 6.295292 GGAGGCAAAATTGTAACTGGAGAATT 60.295 38.462 0.00 0.00 0.00 2.17
4366 4428 6.691508 AGGCAAAATTGTAACTGGAGAATTC 58.308 36.000 0.00 0.00 0.00 2.17
4367 4429 5.869344 GGCAAAATTGTAACTGGAGAATTCC 59.131 40.000 0.65 0.00 44.31 3.01
4368 4430 5.869344 GCAAAATTGTAACTGGAGAATTCCC 59.131 40.000 0.65 3.96 43.33 3.97
4369 4431 6.295292 GCAAAATTGTAACTGGAGAATTCCCT 60.295 38.462 0.65 0.00 43.33 4.20
4370 4432 7.093945 GCAAAATTGTAACTGGAGAATTCCCTA 60.094 37.037 0.65 0.00 43.33 3.53
4371 4433 7.939784 AAATTGTAACTGGAGAATTCCCTAC 57.060 36.000 0.65 3.55 43.33 3.18
4372 4434 6.893020 ATTGTAACTGGAGAATTCCCTACT 57.107 37.500 0.65 0.00 43.33 2.57
4373 4435 5.934402 TGTAACTGGAGAATTCCCTACTC 57.066 43.478 0.65 0.00 43.33 2.59
4374 4436 4.401519 TGTAACTGGAGAATTCCCTACTCG 59.598 45.833 0.65 0.00 43.33 4.18
4375 4437 3.383698 ACTGGAGAATTCCCTACTCGA 57.616 47.619 0.65 0.00 43.33 4.04
4376 4438 3.025262 ACTGGAGAATTCCCTACTCGAC 58.975 50.000 0.65 0.00 43.33 4.20
4377 4439 2.362717 CTGGAGAATTCCCTACTCGACC 59.637 54.545 0.65 0.00 43.33 4.79
4378 4440 1.337387 GGAGAATTCCCTACTCGACCG 59.663 57.143 0.65 0.00 37.53 4.79
4379 4441 2.022934 GAGAATTCCCTACTCGACCGT 58.977 52.381 0.65 0.00 0.00 4.83
4380 4442 2.022934 AGAATTCCCTACTCGACCGTC 58.977 52.381 0.65 0.00 0.00 4.79
4381 4443 1.747355 GAATTCCCTACTCGACCGTCA 59.253 52.381 0.00 0.00 0.00 4.35
4382 4444 1.390565 ATTCCCTACTCGACCGTCAG 58.609 55.000 0.00 0.00 0.00 3.51
4383 4445 1.310933 TTCCCTACTCGACCGTCAGC 61.311 60.000 0.00 0.00 0.00 4.26
4384 4446 2.044555 CCCTACTCGACCGTCAGCA 61.045 63.158 0.00 0.00 0.00 4.41
4385 4447 1.592400 CCCTACTCGACCGTCAGCAA 61.592 60.000 0.00 0.00 0.00 3.91
4386 4448 0.456221 CCTACTCGACCGTCAGCAAT 59.544 55.000 0.00 0.00 0.00 3.56
4387 4449 1.550065 CTACTCGACCGTCAGCAATG 58.450 55.000 0.00 0.00 0.00 2.82
4388 4450 0.457853 TACTCGACCGTCAGCAATGC 60.458 55.000 0.00 0.00 0.00 3.56
4389 4451 2.434185 TCGACCGTCAGCAATGCC 60.434 61.111 0.00 0.00 0.00 4.40
4390 4452 3.499737 CGACCGTCAGCAATGCCC 61.500 66.667 0.00 0.00 0.00 5.36
4391 4453 2.045926 GACCGTCAGCAATGCCCT 60.046 61.111 0.00 0.00 0.00 5.19
4392 4454 2.045926 ACCGTCAGCAATGCCCTC 60.046 61.111 0.00 0.00 0.00 4.30
4393 4455 3.197790 CCGTCAGCAATGCCCTCG 61.198 66.667 0.00 4.08 0.00 4.63
4394 4456 2.125552 CGTCAGCAATGCCCTCGA 60.126 61.111 0.00 0.00 0.00 4.04
4395 4457 2.456119 CGTCAGCAATGCCCTCGAC 61.456 63.158 0.00 3.17 0.00 4.20
4396 4458 2.125552 TCAGCAATGCCCTCGACG 60.126 61.111 0.00 0.00 0.00 5.12
4397 4459 2.434884 CAGCAATGCCCTCGACGT 60.435 61.111 0.00 0.00 0.00 4.34
4398 4460 2.434884 AGCAATGCCCTCGACGTG 60.435 61.111 0.00 0.00 0.00 4.49
4399 4461 2.742372 GCAATGCCCTCGACGTGT 60.742 61.111 0.00 0.00 0.00 4.49
4400 4462 2.740714 GCAATGCCCTCGACGTGTC 61.741 63.158 0.00 0.00 0.00 3.67
4409 4471 4.042060 CGACGTGTCGCGGTTGTG 62.042 66.667 6.13 0.00 46.50 3.33
4410 4472 4.349871 GACGTGTCGCGGTTGTGC 62.350 66.667 6.13 0.00 46.52 4.57
4411 4473 4.884257 ACGTGTCGCGGTTGTGCT 62.884 61.111 6.13 0.00 46.52 4.40
4412 4474 3.636043 CGTGTCGCGGTTGTGCTT 61.636 61.111 6.13 0.00 36.85 3.91
4413 4475 2.052237 GTGTCGCGGTTGTGCTTG 60.052 61.111 6.13 0.00 0.00 4.01
4414 4476 2.512745 TGTCGCGGTTGTGCTTGT 60.513 55.556 6.13 0.00 0.00 3.16
4415 4477 1.227292 TGTCGCGGTTGTGCTTGTA 60.227 52.632 6.13 0.00 0.00 2.41
4416 4478 0.601576 TGTCGCGGTTGTGCTTGTAT 60.602 50.000 6.13 0.00 0.00 2.29
4417 4479 1.336980 TGTCGCGGTTGTGCTTGTATA 60.337 47.619 6.13 0.00 0.00 1.47
4418 4480 1.323534 GTCGCGGTTGTGCTTGTATAG 59.676 52.381 6.13 0.00 0.00 1.31
4419 4481 1.067425 TCGCGGTTGTGCTTGTATAGT 60.067 47.619 6.13 0.00 0.00 2.12
4420 4482 1.060553 CGCGGTTGTGCTTGTATAGTG 59.939 52.381 0.00 0.00 0.00 2.74
4421 4483 2.073816 GCGGTTGTGCTTGTATAGTGT 58.926 47.619 0.00 0.00 0.00 3.55
4422 4484 2.482721 GCGGTTGTGCTTGTATAGTGTT 59.517 45.455 0.00 0.00 0.00 3.32
4423 4485 3.666902 GCGGTTGTGCTTGTATAGTGTTG 60.667 47.826 0.00 0.00 0.00 3.33
4424 4486 3.496884 CGGTTGTGCTTGTATAGTGTTGT 59.503 43.478 0.00 0.00 0.00 3.32
4425 4487 4.024387 CGGTTGTGCTTGTATAGTGTTGTT 60.024 41.667 0.00 0.00 0.00 2.83
4426 4488 5.177881 CGGTTGTGCTTGTATAGTGTTGTTA 59.822 40.000 0.00 0.00 0.00 2.41
4427 4489 6.368213 GGTTGTGCTTGTATAGTGTTGTTAC 58.632 40.000 0.00 0.00 0.00 2.50
4428 4490 6.017770 GGTTGTGCTTGTATAGTGTTGTTACA 60.018 38.462 0.00 0.00 0.00 2.41
4429 4491 6.779115 TGTGCTTGTATAGTGTTGTTACAG 57.221 37.500 0.00 0.00 34.24 2.74
4430 4492 6.517605 TGTGCTTGTATAGTGTTGTTACAGA 58.482 36.000 0.00 0.00 34.24 3.41
4431 4493 6.645003 TGTGCTTGTATAGTGTTGTTACAGAG 59.355 38.462 0.00 0.00 34.24 3.35
4432 4494 6.866770 GTGCTTGTATAGTGTTGTTACAGAGA 59.133 38.462 0.00 0.00 34.24 3.10
4433 4495 7.545965 GTGCTTGTATAGTGTTGTTACAGAGAT 59.454 37.037 0.00 0.00 34.24 2.75
4434 4496 7.759886 TGCTTGTATAGTGTTGTTACAGAGATC 59.240 37.037 0.00 0.00 34.24 2.75
4435 4497 7.759886 GCTTGTATAGTGTTGTTACAGAGATCA 59.240 37.037 0.00 0.00 34.24 2.92
4436 4498 9.639601 CTTGTATAGTGTTGTTACAGAGATCAA 57.360 33.333 0.00 0.00 34.24 2.57
4437 4499 8.981724 TGTATAGTGTTGTTACAGAGATCAAC 57.018 34.615 0.00 0.00 40.03 3.18
4438 4500 8.581578 TGTATAGTGTTGTTACAGAGATCAACA 58.418 33.333 5.64 5.64 44.70 3.33
4439 4501 9.419297 GTATAGTGTTGTTACAGAGATCAACAA 57.581 33.333 10.38 4.63 47.00 2.83
4440 4502 6.851222 AGTGTTGTTACAGAGATCAACAAG 57.149 37.500 10.38 0.00 47.00 3.16
4441 4503 6.582636 AGTGTTGTTACAGAGATCAACAAGA 58.417 36.000 10.38 5.28 47.00 3.02
4442 4504 6.703607 AGTGTTGTTACAGAGATCAACAAGAG 59.296 38.462 10.38 0.00 47.00 2.85
4443 4505 6.701841 GTGTTGTTACAGAGATCAACAAGAGA 59.298 38.462 10.38 0.00 47.00 3.10
4444 4506 7.224753 GTGTTGTTACAGAGATCAACAAGAGAA 59.775 37.037 10.38 0.00 47.00 2.87
4445 4507 7.224753 TGTTGTTACAGAGATCAACAAGAGAAC 59.775 37.037 8.17 0.11 44.20 3.01
4446 4508 7.055667 TGTTACAGAGATCAACAAGAGAACT 57.944 36.000 0.00 0.00 0.00 3.01
4447 4509 6.925718 TGTTACAGAGATCAACAAGAGAACTG 59.074 38.462 0.00 0.00 33.06 3.16
4448 4510 5.543507 ACAGAGATCAACAAGAGAACTGT 57.456 39.130 0.00 0.00 34.32 3.55
4449 4511 6.656632 ACAGAGATCAACAAGAGAACTGTA 57.343 37.500 0.00 0.00 35.99 2.74
4450 4512 6.451393 ACAGAGATCAACAAGAGAACTGTAC 58.549 40.000 0.00 0.00 35.99 2.90
4451 4513 6.040955 ACAGAGATCAACAAGAGAACTGTACA 59.959 38.462 0.00 0.00 35.99 2.90
4452 4514 7.095910 CAGAGATCAACAAGAGAACTGTACAT 58.904 38.462 0.00 0.00 0.00 2.29
4453 4515 7.275341 CAGAGATCAACAAGAGAACTGTACATC 59.725 40.741 0.00 0.00 0.00 3.06
4454 4516 6.402222 AGATCAACAAGAGAACTGTACATCC 58.598 40.000 0.00 0.00 0.00 3.51
4455 4517 4.894784 TCAACAAGAGAACTGTACATCCC 58.105 43.478 0.00 0.00 0.00 3.85
4456 4518 4.346709 TCAACAAGAGAACTGTACATCCCA 59.653 41.667 0.00 0.00 0.00 4.37
4457 4519 5.013079 TCAACAAGAGAACTGTACATCCCAT 59.987 40.000 0.00 0.00 0.00 4.00
4458 4520 5.091261 ACAAGAGAACTGTACATCCCATC 57.909 43.478 0.00 0.00 0.00 3.51
4459 4521 4.532126 ACAAGAGAACTGTACATCCCATCA 59.468 41.667 0.00 0.00 0.00 3.07
4460 4522 5.190528 ACAAGAGAACTGTACATCCCATCAT 59.809 40.000 0.00 0.00 0.00 2.45
4461 4523 5.965033 AGAGAACTGTACATCCCATCATT 57.035 39.130 0.00 0.00 0.00 2.57
4462 4524 6.319048 AGAGAACTGTACATCCCATCATTT 57.681 37.500 0.00 0.00 0.00 2.32
4463 4525 6.725364 AGAGAACTGTACATCCCATCATTTT 58.275 36.000 0.00 0.00 0.00 1.82
4464 4526 7.177878 AGAGAACTGTACATCCCATCATTTTT 58.822 34.615 0.00 0.00 0.00 1.94
4465 4527 8.328758 AGAGAACTGTACATCCCATCATTTTTA 58.671 33.333 0.00 0.00 0.00 1.52
4466 4528 9.125026 GAGAACTGTACATCCCATCATTTTTAT 57.875 33.333 0.00 0.00 0.00 1.40
4467 4529 9.479549 AGAACTGTACATCCCATCATTTTTATT 57.520 29.630 0.00 0.00 0.00 1.40
4470 4532 9.920946 ACTGTACATCCCATCATTTTTATTAGT 57.079 29.630 0.00 0.00 0.00 2.24
4472 4534 9.693739 TGTACATCCCATCATTTTTATTAGTGT 57.306 29.630 0.00 0.00 0.00 3.55
4476 4538 9.630098 CATCCCATCATTTTTATTAGTGTATGC 57.370 33.333 0.00 0.00 0.00 3.14
4477 4539 7.870826 TCCCATCATTTTTATTAGTGTATGCG 58.129 34.615 0.00 0.00 0.00 4.73
4478 4540 7.040755 TCCCATCATTTTTATTAGTGTATGCGG 60.041 37.037 0.00 0.00 0.00 5.69
4479 4541 7.040755 CCCATCATTTTTATTAGTGTATGCGGA 60.041 37.037 0.00 0.00 0.00 5.54
4480 4542 8.514594 CCATCATTTTTATTAGTGTATGCGGAT 58.485 33.333 0.00 0.00 0.00 4.18
4486 4548 8.951787 TTTTATTAGTGTATGCGGATAACACT 57.048 30.769 24.09 24.09 43.14 3.55
4490 4552 7.760131 TTAGTGTATGCGGATAACACTAAAC 57.240 36.000 28.33 10.67 45.22 2.01
4491 4553 5.726397 AGTGTATGCGGATAACACTAAACA 58.274 37.500 21.48 5.79 39.53 2.83
4492 4554 5.810587 AGTGTATGCGGATAACACTAAACAG 59.189 40.000 21.48 0.00 39.53 3.16
4493 4555 5.579511 GTGTATGCGGATAACACTAAACAGT 59.420 40.000 16.52 0.00 0.00 3.55
4494 4556 5.579119 TGTATGCGGATAACACTAAACAGTG 59.421 40.000 0.00 3.30 44.74 3.66
4495 4557 4.260139 TGCGGATAACACTAAACAGTGA 57.740 40.909 11.54 0.00 42.02 3.41
4496 4558 4.827692 TGCGGATAACACTAAACAGTGAT 58.172 39.130 11.54 2.51 42.02 3.06
4497 4559 5.242434 TGCGGATAACACTAAACAGTGATT 58.758 37.500 11.54 0.00 42.02 2.57
4498 4560 5.350365 TGCGGATAACACTAAACAGTGATTC 59.650 40.000 11.54 5.21 42.02 2.52
4499 4561 5.581085 GCGGATAACACTAAACAGTGATTCT 59.419 40.000 11.54 0.00 42.02 2.40
4500 4562 6.092259 GCGGATAACACTAAACAGTGATTCTT 59.908 38.462 11.54 0.00 42.02 2.52
4501 4563 7.674240 GCGGATAACACTAAACAGTGATTCTTC 60.674 40.741 11.54 2.00 42.02 2.87
4502 4564 7.330946 CGGATAACACTAAACAGTGATTCTTCA 59.669 37.037 11.54 0.00 42.02 3.02
4503 4565 8.660373 GGATAACACTAAACAGTGATTCTTCAG 58.340 37.037 11.54 0.00 42.02 3.02
4504 4566 9.209175 GATAACACTAAACAGTGATTCTTCAGT 57.791 33.333 11.54 0.00 42.02 3.41
4506 4568 8.958119 AACACTAAACAGTGATTCTTCAGTAA 57.042 30.769 11.54 0.00 42.02 2.24
4507 4569 8.366671 ACACTAAACAGTGATTCTTCAGTAAC 57.633 34.615 11.54 0.00 42.02 2.50
4508 4570 7.441458 ACACTAAACAGTGATTCTTCAGTAACC 59.559 37.037 11.54 0.00 42.02 2.85
4509 4571 5.924475 AAACAGTGATTCTTCAGTAACCG 57.076 39.130 0.00 0.00 33.64 4.44
4510 4572 4.602340 ACAGTGATTCTTCAGTAACCGT 57.398 40.909 0.00 0.00 33.64 4.83
4511 4573 4.957296 ACAGTGATTCTTCAGTAACCGTT 58.043 39.130 0.00 0.00 33.64 4.44
4512 4574 5.365619 ACAGTGATTCTTCAGTAACCGTTT 58.634 37.500 0.00 0.00 33.64 3.60
4513 4575 5.465724 ACAGTGATTCTTCAGTAACCGTTTC 59.534 40.000 0.00 0.00 33.64 2.78
4514 4576 5.465390 CAGTGATTCTTCAGTAACCGTTTCA 59.535 40.000 0.00 0.00 33.64 2.69
4515 4577 6.018262 CAGTGATTCTTCAGTAACCGTTTCAA 60.018 38.462 0.00 0.00 33.64 2.69
4516 4578 6.018180 AGTGATTCTTCAGTAACCGTTTCAAC 60.018 38.462 0.00 0.00 33.64 3.18
4517 4579 6.018180 GTGATTCTTCAGTAACCGTTTCAACT 60.018 38.462 0.00 0.00 30.85 3.16
4518 4580 5.728351 TTCTTCAGTAACCGTTTCAACTG 57.272 39.130 6.39 6.39 40.54 3.16
4519 4581 4.761975 TCTTCAGTAACCGTTTCAACTGT 58.238 39.130 10.91 0.00 40.18 3.55
4520 4582 4.569162 TCTTCAGTAACCGTTTCAACTGTG 59.431 41.667 10.91 7.07 40.18 3.66
4521 4583 2.610374 TCAGTAACCGTTTCAACTGTGC 59.390 45.455 10.91 0.00 40.18 4.57
4522 4584 2.353269 CAGTAACCGTTTCAACTGTGCA 59.647 45.455 4.98 0.00 35.66 4.57
4523 4585 3.003275 CAGTAACCGTTTCAACTGTGCAT 59.997 43.478 0.00 0.00 35.66 3.96
4524 4586 4.212425 CAGTAACCGTTTCAACTGTGCATA 59.788 41.667 0.00 0.00 35.66 3.14
4525 4587 5.001232 AGTAACCGTTTCAACTGTGCATAT 58.999 37.500 0.00 0.00 0.00 1.78
4526 4588 4.846779 AACCGTTTCAACTGTGCATATT 57.153 36.364 0.00 0.00 0.00 1.28
4527 4589 5.950758 AACCGTTTCAACTGTGCATATTA 57.049 34.783 0.00 0.00 0.00 0.98
4528 4590 5.291293 ACCGTTTCAACTGTGCATATTAC 57.709 39.130 0.00 0.00 0.00 1.89
4529 4591 4.757657 ACCGTTTCAACTGTGCATATTACA 59.242 37.500 0.00 0.00 0.00 2.41
4530 4592 5.086058 CCGTTTCAACTGTGCATATTACAC 58.914 41.667 0.00 0.00 38.55 2.90
4598 4661 3.499918 AGCGGATACAAAGCATTATGAGC 59.500 43.478 0.00 0.00 0.00 4.26
4644 4707 0.747644 TGCACACGGCCCAATATGAG 60.748 55.000 0.00 0.00 43.89 2.90
4721 4788 3.031736 AGACCGACACTATGCCTATGTT 58.968 45.455 0.00 0.00 0.00 2.71
4974 5041 0.689745 TAAGGCATACGCTCCCACCT 60.690 55.000 0.00 0.00 38.60 4.00
4982 5050 4.502604 GCATACGCTCCCACCTTTATTAGA 60.503 45.833 0.00 0.00 34.30 2.10
5018 5086 3.757270 TGAAATACCGTCCAACCAATGT 58.243 40.909 0.00 0.00 0.00 2.71
5020 5088 3.713826 AATACCGTCCAACCAATGTCT 57.286 42.857 0.00 0.00 0.00 3.41
5053 5121 2.872245 CAACAGTTATGGGCGGATACAG 59.128 50.000 0.00 0.00 0.00 2.74
5088 5156 4.801330 TGAATGACTGACCACGTAGAAT 57.199 40.909 0.00 0.00 0.00 2.40
5095 5163 2.139917 TGACCACGTAGAATGTGCAAC 58.860 47.619 0.00 0.00 33.88 4.17
5227 5299 6.373216 CCCCTACGAAGATACAACATGAAAAA 59.627 38.462 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 89 3.182152 ACTAACTGCCTGGGAATGTAGT 58.818 45.455 0.00 0.00 0.00 2.73
74 91 3.178046 TGACTAACTGCCTGGGAATGTA 58.822 45.455 0.00 0.00 0.00 2.29
75 92 1.985159 TGACTAACTGCCTGGGAATGT 59.015 47.619 0.00 0.00 0.00 2.71
82 99 1.674221 GCTGGACTGACTAACTGCCTG 60.674 57.143 0.00 0.00 0.00 4.85
83 100 0.610687 GCTGGACTGACTAACTGCCT 59.389 55.000 0.00 0.00 0.00 4.75
196 219 0.109597 CTTGCACGGCAGGAACAATC 60.110 55.000 2.52 0.00 40.61 2.67
290 313 8.916628 ATTATAAAGAAGAGAGGCAAGAATCC 57.083 34.615 0.00 0.00 0.00 3.01
308 332 6.015350 TGTTTCAAGGCCCAACGAATTATAAA 60.015 34.615 0.00 0.00 0.00 1.40
324 348 4.083110 CCATACTCAGCAACTGTTTCAAGG 60.083 45.833 0.00 0.00 32.61 3.61
445 477 3.700577 GTGATGACCACGGCAATTG 57.299 52.632 0.00 0.00 35.86 2.32
455 487 2.939103 GACATGGTGCTAAGTGATGACC 59.061 50.000 0.00 0.00 0.00 4.02
486 518 6.269077 TGATCCCCGCAAGATATTAAGAGTAA 59.731 38.462 0.00 0.00 43.02 2.24
513 545 5.690409 GCCTTTTTCTTACTAAAGTGCCAAC 59.310 40.000 0.00 0.00 34.13 3.77
514 546 5.361285 TGCCTTTTTCTTACTAAAGTGCCAA 59.639 36.000 0.00 0.00 34.13 4.52
627 669 1.474320 CCGGAGCGTATTGGGATTTCA 60.474 52.381 0.00 0.00 0.00 2.69
629 671 0.818040 GCCGGAGCGTATTGGGATTT 60.818 55.000 5.05 0.00 0.00 2.17
630 672 1.227853 GCCGGAGCGTATTGGGATT 60.228 57.895 5.05 0.00 0.00 3.01
631 673 1.696097 AAGCCGGAGCGTATTGGGAT 61.696 55.000 5.05 0.00 46.67 3.85
632 674 1.044231 TAAGCCGGAGCGTATTGGGA 61.044 55.000 5.05 0.00 46.67 4.37
633 675 0.034896 ATAAGCCGGAGCGTATTGGG 59.965 55.000 5.05 0.00 40.23 4.12
634 676 1.000955 AGATAAGCCGGAGCGTATTGG 59.999 52.381 5.05 0.00 42.72 3.16
635 677 2.061773 CAGATAAGCCGGAGCGTATTG 58.938 52.381 5.05 0.00 42.72 1.90
684 726 3.398406 TGCTTGTGCGTAAGAATCTCAA 58.602 40.909 4.15 0.00 43.34 3.02
695 737 1.733526 GAAACCCTTGCTTGTGCGT 59.266 52.632 0.00 0.00 43.34 5.24
820 862 1.822990 CGTCTCTGCTAAGTAACCCCA 59.177 52.381 0.00 0.00 0.00 4.96
823 866 2.260481 GTGCGTCTCTGCTAAGTAACC 58.740 52.381 0.00 0.00 35.36 2.85
894 937 2.811317 CTCGGCGAGTTGGTGAGC 60.811 66.667 27.92 0.00 0.00 4.26
924 967 5.600069 TGAGTACCAGACATGATGCTAAGAT 59.400 40.000 0.00 0.00 0.00 2.40
925 968 4.956075 TGAGTACCAGACATGATGCTAAGA 59.044 41.667 0.00 0.00 0.00 2.10
935 978 3.657610 TCCATGGATGAGTACCAGACAT 58.342 45.455 11.44 0.00 40.89 3.06
988 1034 1.546029 GACACCCATGGCTTTTCCTTC 59.454 52.381 6.09 0.00 35.26 3.46
1014 1060 2.615912 GCTGACAAGGATATGAACCAGC 59.384 50.000 0.00 0.00 36.02 4.85
1139 1185 3.450457 AGAACGGCTGAAATCAGAGAGAT 59.550 43.478 14.43 0.00 46.59 2.75
1275 1322 7.574779 GCAACAAATCACATCATTACTGTACCA 60.575 37.037 0.00 0.00 0.00 3.25
1279 1326 6.330004 TGCAACAAATCACATCATTACTGT 57.670 33.333 0.00 0.00 0.00 3.55
1289 1336 6.751425 CAGAGTAGTTTTTGCAACAAATCACA 59.249 34.615 0.97 0.00 0.00 3.58
1290 1337 6.291796 GCAGAGTAGTTTTTGCAACAAATCAC 60.292 38.462 0.97 7.06 36.59 3.06
1408 1455 9.838339 AGATTGATTGGTTATCTTACCTTGTAG 57.162 33.333 0.00 0.00 39.04 2.74
1655 1706 2.242926 TCAGGTGTCAGGACTCAAGAG 58.757 52.381 0.65 0.00 0.00 2.85
1671 1722 3.448301 TGAGGCAGGCAAATTTTATCAGG 59.552 43.478 0.00 0.00 0.00 3.86
1726 1777 0.968405 AAATGCACAAGCCGTTCCAT 59.032 45.000 0.00 0.00 41.13 3.41
1879 1930 9.260002 CTTTAATTTTTGAAACACCATGCTAGT 57.740 29.630 0.00 0.00 0.00 2.57
1880 1931 8.711457 CCTTTAATTTTTGAAACACCATGCTAG 58.289 33.333 0.00 0.00 0.00 3.42
1881 1932 7.172361 GCCTTTAATTTTTGAAACACCATGCTA 59.828 33.333 0.00 0.00 0.00 3.49
1891 1942 7.768120 TCTTTCTGCTGCCTTTAATTTTTGAAA 59.232 29.630 0.00 0.00 0.00 2.69
1906 1957 5.877564 ACCTTAGAAATAGTCTTTCTGCTGC 59.122 40.000 12.48 0.00 38.98 5.25
1941 1992 4.216902 TGCAGAACCAAAATGACATCTCAG 59.783 41.667 0.00 0.00 0.00 3.35
1949 2000 3.960102 ACCTTCTTGCAGAACCAAAATGA 59.040 39.130 0.00 0.00 29.89 2.57
2084 2135 1.023513 GCCAGTCAGTGCTAGGCTTG 61.024 60.000 10.97 0.00 42.01 4.01
2234 2285 9.482627 GGAAAGACAATCATCTATACAGTTAGG 57.517 37.037 0.00 0.00 0.00 2.69
2572 2624 8.454106 AGAACTTTTATGTGACATAGATTGTGC 58.546 33.333 5.34 3.27 39.18 4.57
2667 2719 3.185246 TGAAGCAAGTAGAGGCATAGC 57.815 47.619 0.00 0.00 0.00 2.97
2723 2775 4.961730 TGCAAAGTTATGGGGCTCATTAAT 59.038 37.500 4.56 0.00 37.30 1.40
2764 2816 3.136123 CCAGGTGCTTGGATGCCG 61.136 66.667 0.00 0.00 40.87 5.69
2812 2864 5.277250 TCAGTTGATGATGTACCCTCCTTA 58.723 41.667 0.00 0.00 31.12 2.69
2938 2990 8.259872 GCGTTCATTTCTTTTCTTAAGAAACAC 58.740 33.333 26.47 13.29 45.58 3.32
2987 3039 0.842635 CCTATGAGGCCTCCTTGCTT 59.157 55.000 29.95 10.04 31.76 3.91
3124 3176 5.415701 AGAAATTAACTTGATGTCCGCACAT 59.584 36.000 0.00 0.00 46.64 3.21
3125 3177 4.759693 AGAAATTAACTTGATGTCCGCACA 59.240 37.500 0.00 0.00 36.78 4.57
3126 3178 5.088739 CAGAAATTAACTTGATGTCCGCAC 58.911 41.667 0.00 0.00 0.00 5.34
3127 3179 4.759693 ACAGAAATTAACTTGATGTCCGCA 59.240 37.500 0.00 0.00 0.00 5.69
3128 3180 5.296813 ACAGAAATTAACTTGATGTCCGC 57.703 39.130 0.00 0.00 0.00 5.54
3129 3181 7.827819 TCTACAGAAATTAACTTGATGTCCG 57.172 36.000 0.00 0.00 0.00 4.79
3234 3286 4.033358 CCTACAAGTTTCTGCATAGAAGCG 59.967 45.833 0.00 0.00 45.50 4.68
3267 3319 6.015940 GTGATTCCTGACTTGAAAATTGAGGT 60.016 38.462 0.00 0.00 0.00 3.85
3270 3322 6.547141 ACTGTGATTCCTGACTTGAAAATTGA 59.453 34.615 0.00 0.00 0.00 2.57
3273 3325 6.966534 AACTGTGATTCCTGACTTGAAAAT 57.033 33.333 0.00 0.00 0.00 1.82
3281 3333 6.276847 CCAGATACTAACTGTGATTCCTGAC 58.723 44.000 0.00 0.00 34.04 3.51
3282 3334 5.363868 CCCAGATACTAACTGTGATTCCTGA 59.636 44.000 0.00 0.00 34.04 3.86
3390 3442 0.027194 CAGCATCGGTTGAAGCATCG 59.973 55.000 0.00 0.00 41.19 3.84
3449 3501 5.782047 TGAAAATGCATTAGGAGGTTTGTG 58.218 37.500 13.39 0.00 0.00 3.33
3464 3516 7.387948 TGAGGAAGTTAGTAAGACTGAAAATGC 59.612 37.037 0.00 0.00 0.00 3.56
3481 3533 2.034879 CGCATGCGGTGAGGAAGTT 61.035 57.895 31.99 0.00 35.56 2.66
3753 3808 1.732259 GTCTGCCAACAGTACAATCCG 59.268 52.381 0.00 0.00 44.77 4.18
3754 3809 1.732259 CGTCTGCCAACAGTACAATCC 59.268 52.381 0.00 0.00 44.77 3.01
3760 3815 4.794278 TCTTTATCGTCTGCCAACAGTA 57.206 40.909 0.00 0.00 44.77 2.74
3779 3836 7.944554 TGACTGTTTATCCAAGGAGAAAAATCT 59.055 33.333 10.21 0.00 37.13 2.40
3780 3837 8.110860 TGACTGTTTATCCAAGGAGAAAAATC 57.889 34.615 10.21 8.83 37.13 2.17
3781 3838 7.725844 ACTGACTGTTTATCCAAGGAGAAAAAT 59.274 33.333 10.21 0.17 37.13 1.82
3782 3839 7.013274 CACTGACTGTTTATCCAAGGAGAAAAA 59.987 37.037 10.21 4.85 37.13 1.94
3786 3843 4.838423 TCACTGACTGTTTATCCAAGGAGA 59.162 41.667 0.00 0.00 0.00 3.71
3788 3845 5.248248 TCATCACTGACTGTTTATCCAAGGA 59.752 40.000 0.00 0.00 0.00 3.36
3793 3850 8.492673 TGTTAATCATCACTGACTGTTTATCC 57.507 34.615 0.00 0.00 33.22 2.59
3800 3857 5.673068 GCAGCTTGTTAATCATCACTGACTG 60.673 44.000 0.00 0.00 33.22 3.51
3942 4003 5.241662 GGCACAGAGAGTTGAAATCTTACT 58.758 41.667 0.00 0.00 0.00 2.24
3945 4006 3.070018 CGGCACAGAGAGTTGAAATCTT 58.930 45.455 0.00 0.00 0.00 2.40
3948 4009 2.037772 ACTCGGCACAGAGAGTTGAAAT 59.962 45.455 4.77 0.00 44.46 2.17
3955 4016 0.884514 TTCTCACTCGGCACAGAGAG 59.115 55.000 4.77 6.25 40.57 3.20
3966 4027 2.872858 GTTGGTGGTTCAGTTCTCACTC 59.127 50.000 0.00 0.00 0.00 3.51
3968 4029 2.639065 TGTTGGTGGTTCAGTTCTCAC 58.361 47.619 0.00 0.00 0.00 3.51
3969 4030 3.476552 GATGTTGGTGGTTCAGTTCTCA 58.523 45.455 0.00 0.00 0.00 3.27
3970 4031 2.480419 CGATGTTGGTGGTTCAGTTCTC 59.520 50.000 0.00 0.00 0.00 2.87
3993 4055 3.199289 AGCTCAACAGGTGATGATCATCA 59.801 43.478 30.27 30.27 44.83 3.07
4016 4078 1.267121 ATCCAGCACTTGAGTACCGT 58.733 50.000 0.00 0.00 0.00 4.83
4017 4079 3.384668 CATATCCAGCACTTGAGTACCG 58.615 50.000 0.00 0.00 0.00 4.02
4142 4204 2.031857 GTCGATGTAGTAGAGGCCGAAG 60.032 54.545 0.00 0.00 0.00 3.79
4218 4280 4.778143 CCGGTTCCGGGCCAGAAG 62.778 72.222 21.10 0.00 44.99 2.85
4234 4296 3.665675 ATGACGGCAGCGGTCTTCC 62.666 63.158 27.76 8.31 35.27 3.46
4275 4337 2.234300 TGGAACGGTGACTGAAGAAC 57.766 50.000 0.00 0.00 0.00 3.01
4289 4351 5.637006 TGGTAACTATGCACAATTGGAAC 57.363 39.130 10.83 0.00 37.61 3.62
4305 4367 6.506147 TGTACGGATGTGTGTATATGGTAAC 58.494 40.000 0.00 0.00 0.00 2.50
4306 4368 6.712179 TGTACGGATGTGTGTATATGGTAA 57.288 37.500 0.00 0.00 0.00 2.85
4308 4370 5.801531 ATGTACGGATGTGTGTATATGGT 57.198 39.130 0.00 0.00 0.00 3.55
4309 4371 6.071560 AGGTATGTACGGATGTGTGTATATGG 60.072 42.308 0.00 0.00 0.00 2.74
4310 4372 6.920817 AGGTATGTACGGATGTGTGTATATG 58.079 40.000 0.00 0.00 0.00 1.78
4311 4373 7.534723 AAGGTATGTACGGATGTGTGTATAT 57.465 36.000 0.00 0.00 0.00 0.86
4312 4374 6.964807 AAGGTATGTACGGATGTGTGTATA 57.035 37.500 0.00 0.00 0.00 1.47
4313 4375 5.864418 AAGGTATGTACGGATGTGTGTAT 57.136 39.130 0.00 0.00 0.00 2.29
4314 4376 6.964807 ATAAGGTATGTACGGATGTGTGTA 57.035 37.500 0.00 0.00 0.00 2.90
4315 4377 5.864418 ATAAGGTATGTACGGATGTGTGT 57.136 39.130 0.00 0.00 0.00 3.72
4316 4378 6.866770 CCTAATAAGGTATGTACGGATGTGTG 59.133 42.308 0.00 0.00 38.19 3.82
4317 4379 6.779049 TCCTAATAAGGTATGTACGGATGTGT 59.221 38.462 0.00 0.00 44.09 3.72
4318 4380 7.223260 TCCTAATAAGGTATGTACGGATGTG 57.777 40.000 0.00 0.00 44.09 3.21
4319 4381 6.436532 CCTCCTAATAAGGTATGTACGGATGT 59.563 42.308 0.00 0.00 44.09 3.06
4320 4382 6.627508 GCCTCCTAATAAGGTATGTACGGATG 60.628 46.154 0.00 0.00 44.09 3.51
4321 4383 5.421374 GCCTCCTAATAAGGTATGTACGGAT 59.579 44.000 0.00 0.00 44.09 4.18
4322 4384 4.768968 GCCTCCTAATAAGGTATGTACGGA 59.231 45.833 0.00 0.00 44.09 4.69
4323 4385 4.525487 TGCCTCCTAATAAGGTATGTACGG 59.475 45.833 0.00 0.00 44.09 4.02
4324 4386 5.717078 TGCCTCCTAATAAGGTATGTACG 57.283 43.478 0.00 0.00 44.09 3.67
4325 4387 8.919777 ATTTTGCCTCCTAATAAGGTATGTAC 57.080 34.615 0.00 0.00 44.09 2.90
4326 4388 9.349713 CAATTTTGCCTCCTAATAAGGTATGTA 57.650 33.333 0.00 0.00 44.09 2.29
4327 4389 7.839200 ACAATTTTGCCTCCTAATAAGGTATGT 59.161 33.333 0.00 0.00 44.09 2.29
4328 4390 8.237811 ACAATTTTGCCTCCTAATAAGGTATG 57.762 34.615 0.00 0.00 44.09 2.39
4329 4391 9.930158 TTACAATTTTGCCTCCTAATAAGGTAT 57.070 29.630 0.00 0.00 44.09 2.73
4330 4392 9.181061 GTTACAATTTTGCCTCCTAATAAGGTA 57.819 33.333 0.00 0.00 44.09 3.08
4331 4393 7.893833 AGTTACAATTTTGCCTCCTAATAAGGT 59.106 33.333 0.00 0.00 44.09 3.50
4332 4394 8.190784 CAGTTACAATTTTGCCTCCTAATAAGG 58.809 37.037 0.00 0.00 45.21 2.69
4333 4395 8.190784 CCAGTTACAATTTTGCCTCCTAATAAG 58.809 37.037 0.00 0.00 0.00 1.73
4334 4396 7.891183 TCCAGTTACAATTTTGCCTCCTAATAA 59.109 33.333 0.00 0.00 0.00 1.40
4335 4397 7.406916 TCCAGTTACAATTTTGCCTCCTAATA 58.593 34.615 0.00 0.00 0.00 0.98
4336 4398 6.252995 TCCAGTTACAATTTTGCCTCCTAAT 58.747 36.000 0.00 0.00 0.00 1.73
4337 4399 5.636123 TCCAGTTACAATTTTGCCTCCTAA 58.364 37.500 0.00 0.00 0.00 2.69
4338 4400 5.013704 TCTCCAGTTACAATTTTGCCTCCTA 59.986 40.000 0.00 0.00 0.00 2.94
4339 4401 4.082125 CTCCAGTTACAATTTTGCCTCCT 58.918 43.478 0.00 0.00 0.00 3.69
4340 4402 4.079253 TCTCCAGTTACAATTTTGCCTCC 58.921 43.478 0.00 0.00 0.00 4.30
4341 4403 5.705609 TTCTCCAGTTACAATTTTGCCTC 57.294 39.130 0.00 0.00 0.00 4.70
4342 4404 6.295292 GGAATTCTCCAGTTACAATTTTGCCT 60.295 38.462 5.23 0.00 41.96 4.75
4343 4405 5.869344 GGAATTCTCCAGTTACAATTTTGCC 59.131 40.000 5.23 0.00 41.96 4.52
4344 4406 5.869344 GGGAATTCTCCAGTTACAATTTTGC 59.131 40.000 5.23 0.00 44.51 3.68
4345 4407 7.232118 AGGGAATTCTCCAGTTACAATTTTG 57.768 36.000 0.38 0.00 44.51 2.44
4346 4408 8.170730 AGTAGGGAATTCTCCAGTTACAATTTT 58.829 33.333 0.38 0.00 44.51 1.82
4347 4409 7.699878 AGTAGGGAATTCTCCAGTTACAATTT 58.300 34.615 0.38 0.00 44.51 1.82
4348 4410 7.272144 AGTAGGGAATTCTCCAGTTACAATT 57.728 36.000 0.38 0.00 44.51 2.32
4349 4411 6.407074 CGAGTAGGGAATTCTCCAGTTACAAT 60.407 42.308 0.38 0.00 44.51 2.71
4350 4412 5.105473 CGAGTAGGGAATTCTCCAGTTACAA 60.105 44.000 0.38 0.00 44.51 2.41
4351 4413 4.401519 CGAGTAGGGAATTCTCCAGTTACA 59.598 45.833 0.38 0.00 44.51 2.41
4352 4414 4.643784 TCGAGTAGGGAATTCTCCAGTTAC 59.356 45.833 0.38 0.00 44.51 2.50
4353 4415 4.643784 GTCGAGTAGGGAATTCTCCAGTTA 59.356 45.833 0.38 0.00 44.51 2.24
4354 4416 3.447944 GTCGAGTAGGGAATTCTCCAGTT 59.552 47.826 0.38 0.00 44.51 3.16
4355 4417 3.025262 GTCGAGTAGGGAATTCTCCAGT 58.975 50.000 0.38 0.00 44.51 4.00
4356 4418 2.362717 GGTCGAGTAGGGAATTCTCCAG 59.637 54.545 0.38 0.00 44.51 3.86
4357 4419 2.385803 GGTCGAGTAGGGAATTCTCCA 58.614 52.381 0.38 0.00 44.51 3.86
4358 4420 1.337387 CGGTCGAGTAGGGAATTCTCC 59.663 57.143 0.38 3.25 41.59 3.71
4359 4421 2.022934 ACGGTCGAGTAGGGAATTCTC 58.977 52.381 5.23 0.00 0.00 2.87
4360 4422 2.022934 GACGGTCGAGTAGGGAATTCT 58.977 52.381 5.23 0.00 0.00 2.40
4361 4423 1.747355 TGACGGTCGAGTAGGGAATTC 59.253 52.381 3.34 0.00 0.00 2.17
4362 4424 1.749634 CTGACGGTCGAGTAGGGAATT 59.250 52.381 3.34 0.00 0.00 2.17
4363 4425 1.390565 CTGACGGTCGAGTAGGGAAT 58.609 55.000 3.34 0.00 0.00 3.01
4364 4426 1.310933 GCTGACGGTCGAGTAGGGAA 61.311 60.000 3.34 0.00 0.00 3.97
4365 4427 1.748122 GCTGACGGTCGAGTAGGGA 60.748 63.158 3.34 0.00 0.00 4.20
4366 4428 1.592400 TTGCTGACGGTCGAGTAGGG 61.592 60.000 3.34 0.00 0.00 3.53
4367 4429 0.456221 ATTGCTGACGGTCGAGTAGG 59.544 55.000 3.34 0.00 0.00 3.18
4368 4430 1.550065 CATTGCTGACGGTCGAGTAG 58.450 55.000 3.34 0.00 0.00 2.57
4369 4431 0.457853 GCATTGCTGACGGTCGAGTA 60.458 55.000 0.16 0.00 0.00 2.59
4370 4432 1.738099 GCATTGCTGACGGTCGAGT 60.738 57.895 0.16 0.00 0.00 4.18
4371 4433 2.456119 GGCATTGCTGACGGTCGAG 61.456 63.158 8.82 3.74 0.00 4.04
4372 4434 2.434185 GGCATTGCTGACGGTCGA 60.434 61.111 8.82 0.00 0.00 4.20
4373 4435 3.499737 GGGCATTGCTGACGGTCG 61.500 66.667 8.82 0.00 0.00 4.79
4374 4436 2.045926 AGGGCATTGCTGACGGTC 60.046 61.111 8.82 0.00 0.00 4.79
4375 4437 2.045926 GAGGGCATTGCTGACGGT 60.046 61.111 8.82 0.00 0.00 4.83
4376 4438 3.197790 CGAGGGCATTGCTGACGG 61.198 66.667 8.82 0.00 0.00 4.79
4377 4439 2.125552 TCGAGGGCATTGCTGACG 60.126 61.111 8.82 11.19 0.00 4.35
4378 4440 2.456119 CGTCGAGGGCATTGCTGAC 61.456 63.158 8.82 10.36 0.00 3.51
4379 4441 2.125552 CGTCGAGGGCATTGCTGA 60.126 61.111 8.82 0.00 0.00 4.26
4380 4442 2.434884 ACGTCGAGGGCATTGCTG 60.435 61.111 10.27 0.00 0.00 4.41
4381 4443 2.434884 CACGTCGAGGGCATTGCT 60.435 61.111 10.27 0.00 0.00 3.91
4382 4444 2.740714 GACACGTCGAGGGCATTGC 61.741 63.158 10.27 0.00 0.00 3.56
4383 4445 3.474806 GACACGTCGAGGGCATTG 58.525 61.111 10.27 1.06 0.00 2.82
4393 4455 4.349871 GCACAACCGCGACACGTC 62.350 66.667 8.23 0.00 41.42 4.34
4394 4456 4.884257 AGCACAACCGCGACACGT 62.884 61.111 8.23 0.00 41.42 4.49
4395 4457 3.636043 AAGCACAACCGCGACACG 61.636 61.111 8.23 0.00 43.15 4.49
4396 4458 1.492319 TACAAGCACAACCGCGACAC 61.492 55.000 8.23 0.00 36.85 3.67
4397 4459 0.601576 ATACAAGCACAACCGCGACA 60.602 50.000 8.23 0.00 36.85 4.35
4398 4460 1.323534 CTATACAAGCACAACCGCGAC 59.676 52.381 8.23 0.00 36.85 5.19
4399 4461 1.067425 ACTATACAAGCACAACCGCGA 60.067 47.619 8.23 0.00 36.85 5.87
4400 4462 1.060553 CACTATACAAGCACAACCGCG 59.939 52.381 0.00 0.00 36.85 6.46
4401 4463 2.073816 ACACTATACAAGCACAACCGC 58.926 47.619 0.00 0.00 0.00 5.68
4402 4464 3.496884 ACAACACTATACAAGCACAACCG 59.503 43.478 0.00 0.00 0.00 4.44
4403 4465 5.432885 AACAACACTATACAAGCACAACC 57.567 39.130 0.00 0.00 0.00 3.77
4404 4466 6.950545 TGTAACAACACTATACAAGCACAAC 58.049 36.000 0.00 0.00 0.00 3.32
4405 4467 6.987404 TCTGTAACAACACTATACAAGCACAA 59.013 34.615 0.00 0.00 0.00 3.33
4406 4468 6.517605 TCTGTAACAACACTATACAAGCACA 58.482 36.000 0.00 0.00 0.00 4.57
4407 4469 6.866770 TCTCTGTAACAACACTATACAAGCAC 59.133 38.462 0.00 0.00 0.00 4.40
4408 4470 6.988522 TCTCTGTAACAACACTATACAAGCA 58.011 36.000 0.00 0.00 0.00 3.91
4409 4471 7.759886 TGATCTCTGTAACAACACTATACAAGC 59.240 37.037 0.00 0.00 0.00 4.01
4410 4472 9.639601 TTGATCTCTGTAACAACACTATACAAG 57.360 33.333 0.00 0.00 0.00 3.16
4411 4473 9.419297 GTTGATCTCTGTAACAACACTATACAA 57.581 33.333 0.00 0.00 41.16 2.41
4412 4474 8.581578 TGTTGATCTCTGTAACAACACTATACA 58.418 33.333 0.00 0.00 44.50 2.29
4413 4475 8.981724 TGTTGATCTCTGTAACAACACTATAC 57.018 34.615 0.00 0.00 44.50 1.47
4419 4481 6.816136 TCTCTTGTTGATCTCTGTAACAACA 58.184 36.000 0.00 0.00 46.55 3.33
4420 4482 7.439655 AGTTCTCTTGTTGATCTCTGTAACAAC 59.560 37.037 4.63 0.00 38.83 3.32
4421 4483 7.439356 CAGTTCTCTTGTTGATCTCTGTAACAA 59.561 37.037 7.75 7.75 40.73 2.83
4422 4484 6.925718 CAGTTCTCTTGTTGATCTCTGTAACA 59.074 38.462 0.00 0.00 32.93 2.41
4423 4485 6.926272 ACAGTTCTCTTGTTGATCTCTGTAAC 59.074 38.462 0.00 0.00 31.86 2.50
4424 4486 7.055667 ACAGTTCTCTTGTTGATCTCTGTAA 57.944 36.000 0.00 0.00 31.86 2.41
4425 4487 6.656632 ACAGTTCTCTTGTTGATCTCTGTA 57.343 37.500 0.00 0.00 31.86 2.74
4426 4488 5.543507 ACAGTTCTCTTGTTGATCTCTGT 57.456 39.130 0.00 0.00 0.00 3.41
4427 4489 6.450545 TGTACAGTTCTCTTGTTGATCTCTG 58.549 40.000 0.00 0.00 0.00 3.35
4428 4490 6.656632 TGTACAGTTCTCTTGTTGATCTCT 57.343 37.500 0.00 0.00 0.00 3.10
4429 4491 6.533367 GGATGTACAGTTCTCTTGTTGATCTC 59.467 42.308 0.33 0.00 0.00 2.75
4430 4492 6.402222 GGATGTACAGTTCTCTTGTTGATCT 58.598 40.000 0.33 0.00 0.00 2.75
4431 4493 5.582665 GGGATGTACAGTTCTCTTGTTGATC 59.417 44.000 0.33 0.00 0.00 2.92
4432 4494 5.013079 TGGGATGTACAGTTCTCTTGTTGAT 59.987 40.000 0.33 0.00 0.00 2.57
4433 4495 4.346709 TGGGATGTACAGTTCTCTTGTTGA 59.653 41.667 0.33 0.00 0.00 3.18
4434 4496 4.641396 TGGGATGTACAGTTCTCTTGTTG 58.359 43.478 0.33 0.00 0.00 3.33
4435 4497 4.974645 TGGGATGTACAGTTCTCTTGTT 57.025 40.909 0.33 0.00 0.00 2.83
4436 4498 4.532126 TGATGGGATGTACAGTTCTCTTGT 59.468 41.667 0.33 0.00 0.00 3.16
4437 4499 5.089970 TGATGGGATGTACAGTTCTCTTG 57.910 43.478 0.33 0.00 0.00 3.02
4438 4500 5.965033 ATGATGGGATGTACAGTTCTCTT 57.035 39.130 0.33 0.00 0.00 2.85
4439 4501 5.965033 AATGATGGGATGTACAGTTCTCT 57.035 39.130 0.33 0.00 0.00 3.10
4440 4502 7.396540 AAAAATGATGGGATGTACAGTTCTC 57.603 36.000 0.33 0.00 0.00 2.87
4441 4503 9.479549 AATAAAAATGATGGGATGTACAGTTCT 57.520 29.630 0.33 0.00 0.00 3.01
4444 4506 9.920946 ACTAATAAAAATGATGGGATGTACAGT 57.079 29.630 0.33 0.00 0.00 3.55
4446 4508 9.693739 ACACTAATAAAAATGATGGGATGTACA 57.306 29.630 0.00 0.00 0.00 2.90
4450 4512 9.630098 GCATACACTAATAAAAATGATGGGATG 57.370 33.333 0.00 0.00 0.00 3.51
4451 4513 8.514594 CGCATACACTAATAAAAATGATGGGAT 58.485 33.333 0.00 0.00 0.00 3.85
4452 4514 7.040755 CCGCATACACTAATAAAAATGATGGGA 60.041 37.037 0.00 0.00 0.00 4.37
4453 4515 7.040755 TCCGCATACACTAATAAAAATGATGGG 60.041 37.037 0.00 0.00 0.00 4.00
4454 4516 7.870826 TCCGCATACACTAATAAAAATGATGG 58.129 34.615 0.00 0.00 0.00 3.51
4460 4522 9.386010 AGTGTTATCCGCATACACTAATAAAAA 57.614 29.630 5.39 0.00 39.53 1.94
4461 4523 8.951787 AGTGTTATCCGCATACACTAATAAAA 57.048 30.769 5.39 0.00 39.53 1.52
4464 4526 9.467258 GTTTAGTGTTATCCGCATACACTAATA 57.533 33.333 20.95 12.77 46.48 0.98
4465 4527 7.982919 TGTTTAGTGTTATCCGCATACACTAAT 59.017 33.333 20.95 0.63 46.48 1.73
4466 4528 7.321908 TGTTTAGTGTTATCCGCATACACTAA 58.678 34.615 18.06 18.06 45.97 2.24
4467 4529 6.865411 TGTTTAGTGTTATCCGCATACACTA 58.135 36.000 9.54 9.54 41.27 2.74
4468 4530 5.726397 TGTTTAGTGTTATCCGCATACACT 58.274 37.500 11.32 11.32 43.14 3.55
4469 4531 5.579511 ACTGTTTAGTGTTATCCGCATACAC 59.420 40.000 0.00 0.00 35.34 2.90
4470 4532 5.726397 ACTGTTTAGTGTTATCCGCATACA 58.274 37.500 0.00 0.00 35.34 2.29
4484 4546 6.645415 CGGTTACTGAAGAATCACTGTTTAGT 59.355 38.462 0.00 0.00 37.75 2.24
4485 4547 6.645415 ACGGTTACTGAAGAATCACTGTTTAG 59.355 38.462 0.00 0.00 0.00 1.85
4486 4548 6.518493 ACGGTTACTGAAGAATCACTGTTTA 58.482 36.000 0.00 0.00 0.00 2.01
4487 4549 5.365619 ACGGTTACTGAAGAATCACTGTTT 58.634 37.500 0.00 0.00 0.00 2.83
4488 4550 4.957296 ACGGTTACTGAAGAATCACTGTT 58.043 39.130 0.00 0.00 0.00 3.16
4489 4551 4.602340 ACGGTTACTGAAGAATCACTGT 57.398 40.909 0.00 0.00 0.00 3.55
4490 4552 5.465390 TGAAACGGTTACTGAAGAATCACTG 59.535 40.000 0.00 0.00 0.00 3.66
4491 4553 5.607477 TGAAACGGTTACTGAAGAATCACT 58.393 37.500 0.00 0.00 0.00 3.41
4492 4554 5.917541 TGAAACGGTTACTGAAGAATCAC 57.082 39.130 0.00 0.00 0.00 3.06
4493 4555 6.018262 CAGTTGAAACGGTTACTGAAGAATCA 60.018 38.462 10.05 0.23 40.24 2.57
4494 4556 6.018180 ACAGTTGAAACGGTTACTGAAGAATC 60.018 38.462 20.25 3.54 40.24 2.52
4495 4557 5.820947 ACAGTTGAAACGGTTACTGAAGAAT 59.179 36.000 20.25 0.00 40.24 2.40
4496 4558 5.064198 CACAGTTGAAACGGTTACTGAAGAA 59.936 40.000 20.25 0.00 40.24 2.52
4497 4559 4.569162 CACAGTTGAAACGGTTACTGAAGA 59.431 41.667 20.25 0.00 40.24 2.87
4498 4560 4.785341 GCACAGTTGAAACGGTTACTGAAG 60.785 45.833 20.25 13.48 40.24 3.02
4499 4561 3.064271 GCACAGTTGAAACGGTTACTGAA 59.936 43.478 20.25 0.00 40.24 3.02
4500 4562 2.610374 GCACAGTTGAAACGGTTACTGA 59.390 45.455 20.25 0.00 40.24 3.41
4501 4563 2.353269 TGCACAGTTGAAACGGTTACTG 59.647 45.455 13.37 13.37 42.75 2.74
4502 4564 2.634600 TGCACAGTTGAAACGGTTACT 58.365 42.857 0.00 0.00 35.13 2.24
4503 4565 3.619233 ATGCACAGTTGAAACGGTTAC 57.381 42.857 0.00 0.00 35.13 2.50
4504 4566 5.950758 AATATGCACAGTTGAAACGGTTA 57.049 34.783 0.00 0.00 35.13 2.85
4505 4567 4.846779 AATATGCACAGTTGAAACGGTT 57.153 36.364 0.00 0.00 35.13 4.44
4506 4568 4.757657 TGTAATATGCACAGTTGAAACGGT 59.242 37.500 0.00 0.00 37.83 4.83
4507 4569 5.086058 GTGTAATATGCACAGTTGAAACGG 58.914 41.667 0.00 0.00 36.88 4.44
4508 4570 5.684850 TGTGTAATATGCACAGTTGAAACG 58.315 37.500 8.71 0.00 41.32 3.60
4598 4661 2.535485 TATGCAGAGGCCGGGTGTTG 62.535 60.000 2.18 0.00 40.13 3.33
4644 4707 7.784633 TTTTTCATCAATTTTTGTCAGACCC 57.215 32.000 0.00 0.00 0.00 4.46
4675 4742 2.999331 GGCTCTACTGTTGCCCATTTA 58.001 47.619 7.60 0.00 40.71 1.40
4721 4788 0.325203 TCGATCCACCACCTCCATCA 60.325 55.000 0.00 0.00 0.00 3.07
4801 4868 1.202710 TGTTCAAGGCGGTGTGTATGT 60.203 47.619 0.00 0.00 0.00 2.29
4982 5050 8.173542 ACGGTATTTCAAATAGGTTCAAAACT 57.826 30.769 0.00 0.00 0.00 2.66
5018 5086 8.474025 CCCATAACTGTTGCCAATATTTTTAGA 58.526 33.333 2.69 0.00 0.00 2.10
5020 5088 7.044798 GCCCATAACTGTTGCCAATATTTTTA 58.955 34.615 2.69 0.00 0.00 1.52
5040 5108 2.806745 CGTCAAATCTGTATCCGCCCAT 60.807 50.000 0.00 0.00 0.00 4.00
5053 5121 6.684555 GTCAGTCATTCAAATAGCGTCAAATC 59.315 38.462 0.00 0.00 0.00 2.17
5095 5163 2.028748 CACCTCCTTTTCCAATGCAAGG 60.029 50.000 0.00 0.00 38.83 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.