Multiple sequence alignment - TraesCS7A01G450300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G450300 chr7A 100.000 2621 0 0 1 2621 644029741 644027121 0.000000e+00 4841.0
1 TraesCS7A01G450300 chr7A 96.828 536 13 1 2090 2621 93293102 93292567 0.000000e+00 893.0
2 TraesCS7A01G450300 chr7A 96.828 536 12 2 2090 2621 127621325 127620791 0.000000e+00 891.0
3 TraesCS7A01G450300 chr7A 96.488 541 15 1 2085 2621 557041804 557042344 0.000000e+00 891.0
4 TraesCS7A01G450300 chr7A 83.551 383 58 5 2 382 126778332 126777953 1.150000e-93 353.0
5 TraesCS7A01G450300 chr7D 96.855 1272 35 3 345 1616 559268796 559267530 0.000000e+00 2122.0
6 TraesCS7A01G450300 chr7D 92.810 306 16 3 2 307 559269097 559268798 3.100000e-119 438.0
7 TraesCS7A01G450300 chr7D 85.054 368 49 6 18 384 453089420 453089782 1.150000e-98 370.0
8 TraesCS7A01G450300 chr7D 95.506 89 4 0 2001 2089 595932369 595932281 2.720000e-30 143.0
9 TraesCS7A01G450300 chr7D 94.382 89 5 0 2001 2089 104083775 104083863 1.270000e-28 137.0
10 TraesCS7A01G450300 chr7D 94.382 89 5 0 2001 2089 595927454 595927366 1.270000e-28 137.0
11 TraesCS7A01G450300 chr7D 85.567 97 7 1 1818 1914 559265866 559265777 7.720000e-16 95.3
12 TraesCS7A01G450300 chr7B 91.915 1175 64 15 465 1616 607428066 607426900 0.000000e+00 1615.0
13 TraesCS7A01G450300 chr7B 89.697 165 8 3 1743 1907 607426164 607426009 4.420000e-48 202.0
14 TraesCS7A01G450300 chr1A 97.020 537 10 3 2090 2621 575013818 575014353 0.000000e+00 898.0
15 TraesCS7A01G450300 chr1A 96.488 541 13 3 2086 2621 569671483 569670944 0.000000e+00 889.0
16 TraesCS7A01G450300 chr1A 85.942 377 46 7 3 376 484294512 484294140 1.890000e-106 396.0
17 TraesCS7A01G450300 chr6A 96.828 536 12 2 2090 2621 593177805 593177271 0.000000e+00 891.0
18 TraesCS7A01G450300 chr3A 96.822 535 13 4 2088 2621 638042473 638041942 0.000000e+00 891.0
19 TraesCS7A01G450300 chr3A 96.317 543 14 3 2083 2621 193928559 193928019 0.000000e+00 887.0
20 TraesCS7A01G450300 chr3A 82.850 379 63 2 4 382 432409397 432409773 3.230000e-89 339.0
21 TraesCS7A01G450300 chr4A 96.488 541 12 4 2086 2621 103451377 103450839 0.000000e+00 887.0
22 TraesCS7A01G450300 chr6B 83.636 385 56 7 2 382 590026113 590026494 3.210000e-94 355.0
23 TraesCS7A01G450300 chr2B 83.333 384 57 7 2 382 413035653 413035274 5.370000e-92 348.0
24 TraesCS7A01G450300 chr3D 84.110 365 51 7 2 362 302225447 302225086 1.930000e-91 346.0
25 TraesCS7A01G450300 chr6D 82.199 382 66 2 2 382 439602757 439602377 6.990000e-86 327.0
26 TraesCS7A01G450300 chr5B 91.954 87 6 1 2007 2092 462737144 462737230 1.270000e-23 121.0
27 TraesCS7A01G450300 chr5B 94.872 39 1 1 2055 2092 462732224 462732262 2.820000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G450300 chr7A 644027121 644029741 2620 True 4841.0 4841 100.000 1 2621 1 chr7A.!!$R4 2620
1 TraesCS7A01G450300 chr7A 93292567 93293102 535 True 893.0 893 96.828 2090 2621 1 chr7A.!!$R1 531
2 TraesCS7A01G450300 chr7A 127620791 127621325 534 True 891.0 891 96.828 2090 2621 1 chr7A.!!$R3 531
3 TraesCS7A01G450300 chr7A 557041804 557042344 540 False 891.0 891 96.488 2085 2621 1 chr7A.!!$F1 536
4 TraesCS7A01G450300 chr7D 559265777 559269097 3320 True 885.1 2122 91.744 2 1914 3 chr7D.!!$R3 1912
5 TraesCS7A01G450300 chr7B 607426009 607428066 2057 True 908.5 1615 90.806 465 1907 2 chr7B.!!$R1 1442
6 TraesCS7A01G450300 chr1A 575013818 575014353 535 False 898.0 898 97.020 2090 2621 1 chr1A.!!$F1 531
7 TraesCS7A01G450300 chr1A 569670944 569671483 539 True 889.0 889 96.488 2086 2621 1 chr1A.!!$R2 535
8 TraesCS7A01G450300 chr6A 593177271 593177805 534 True 891.0 891 96.828 2090 2621 1 chr6A.!!$R1 531
9 TraesCS7A01G450300 chr3A 638041942 638042473 531 True 891.0 891 96.822 2088 2621 1 chr3A.!!$R2 533
10 TraesCS7A01G450300 chr3A 193928019 193928559 540 True 887.0 887 96.317 2083 2621 1 chr3A.!!$R1 538
11 TraesCS7A01G450300 chr4A 103450839 103451377 538 True 887.0 887 96.488 2086 2621 1 chr4A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.309612 AAATCCGTCCGTGTTTGCAC 59.69 50.0 0.0 0.0 41.97 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 3673 0.312729 TCACACGCACTCACACGTAT 59.687 50.0 0.0 0.0 41.32 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.475280 TGTTCTACCATTCCTCGTCGG 59.525 52.381 0.00 0.00 0.00 4.79
37 38 2.579201 CGGAGACCGCACCTTCAT 59.421 61.111 0.00 0.00 41.17 2.57
92 93 0.526211 CGGATGGAGAACGACACAGA 59.474 55.000 0.00 0.00 0.00 3.41
99 100 2.028930 GGAGAACGACACAGACTTGGAT 60.029 50.000 0.00 0.00 0.00 3.41
105 106 1.746615 CACAGACTTGGATGCCCGG 60.747 63.158 0.00 0.00 34.29 5.73
106 107 2.224159 ACAGACTTGGATGCCCGGT 61.224 57.895 0.00 0.00 34.29 5.28
139 140 5.184671 CGTAGGATATGTTTAGGGGTAGGTC 59.815 48.000 0.00 0.00 0.00 3.85
144 145 7.185856 AGGATATGTTTAGGGGTAGGTCTTTTT 59.814 37.037 0.00 0.00 0.00 1.94
220 221 8.090250 TCCCGTCATGTTTATATTAAAATCCG 57.910 34.615 0.00 0.00 0.00 4.18
221 222 7.716123 TCCCGTCATGTTTATATTAAAATCCGT 59.284 33.333 0.00 0.00 0.00 4.69
223 224 8.013378 CCGTCATGTTTATATTAAAATCCGTCC 58.987 37.037 0.00 0.00 0.00 4.79
224 225 7.738609 CGTCATGTTTATATTAAAATCCGTCCG 59.261 37.037 0.00 0.00 0.00 4.79
225 226 8.553696 GTCATGTTTATATTAAAATCCGTCCGT 58.446 33.333 0.00 0.00 0.00 4.69
233 234 0.309612 AAATCCGTCCGTGTTTGCAC 59.690 50.000 0.00 0.00 41.97 4.57
310 311 4.115199 GGCCTCCCGCATCCTTGT 62.115 66.667 0.00 0.00 40.31 3.16
311 312 2.514824 GCCTCCCGCATCCTTGTC 60.515 66.667 0.00 0.00 37.47 3.18
312 313 2.190578 CCTCCCGCATCCTTGTCC 59.809 66.667 0.00 0.00 0.00 4.02
313 314 2.669133 CCTCCCGCATCCTTGTCCA 61.669 63.158 0.00 0.00 0.00 4.02
314 315 1.450312 CTCCCGCATCCTTGTCCAC 60.450 63.158 0.00 0.00 0.00 4.02
315 316 2.819595 CCCGCATCCTTGTCCACG 60.820 66.667 0.00 0.00 0.00 4.94
316 317 2.819595 CCGCATCCTTGTCCACGG 60.820 66.667 0.00 0.00 0.00 4.94
317 318 2.264480 CGCATCCTTGTCCACGGA 59.736 61.111 0.00 0.00 33.01 4.69
318 319 2.100631 CGCATCCTTGTCCACGGAC 61.101 63.158 9.38 9.38 44.77 4.79
319 320 1.296715 GCATCCTTGTCCACGGACT 59.703 57.895 16.88 0.00 44.80 3.85
320 321 1.021390 GCATCCTTGTCCACGGACTG 61.021 60.000 16.88 7.75 44.80 3.51
321 322 0.391661 CATCCTTGTCCACGGACTGG 60.392 60.000 16.88 17.08 44.80 4.00
322 323 2.185310 ATCCTTGTCCACGGACTGGC 62.185 60.000 16.88 0.00 44.80 4.85
323 324 2.358737 CTTGTCCACGGACTGGCC 60.359 66.667 16.88 0.00 44.80 5.36
324 325 3.901797 CTTGTCCACGGACTGGCCC 62.902 68.421 16.88 0.00 44.80 5.80
340 341 3.307906 CCCCCGTCCACGAACAGA 61.308 66.667 0.00 0.00 43.02 3.41
341 342 2.656069 CCCCCGTCCACGAACAGAT 61.656 63.158 0.00 0.00 43.02 2.90
342 343 1.447838 CCCCGTCCACGAACAGATG 60.448 63.158 0.00 0.00 43.02 2.90
343 344 2.100631 CCCGTCCACGAACAGATGC 61.101 63.158 0.00 0.00 43.02 3.91
365 366 1.000843 GGAGAAAATTTGCGGGTTGCT 59.999 47.619 0.00 0.00 46.63 3.91
425 426 8.225107 GCTTTACAATAACGAATGACTGTGTTA 58.775 33.333 0.00 0.00 0.00 2.41
804 812 6.183360 GCGCCTTAAACCATTTCAAATACTTG 60.183 38.462 0.00 0.00 0.00 3.16
1027 1051 1.516603 GCGCACCTTCGACTACCTC 60.517 63.158 0.30 0.00 0.00 3.85
1113 1137 2.361104 CCAACGGTGGTGATGGGG 60.361 66.667 12.69 0.00 40.42 4.96
1620 1644 3.118454 CCGCGGGTGTTGCACTAG 61.118 66.667 20.10 0.00 34.40 2.57
1621 1645 2.048597 CGCGGGTGTTGCACTAGA 60.049 61.111 0.00 0.00 34.40 2.43
1624 1648 0.391130 GCGGGTGTTGCACTAGATGA 60.391 55.000 0.00 0.00 34.40 2.92
1625 1649 1.943968 GCGGGTGTTGCACTAGATGAA 60.944 52.381 0.00 0.00 34.40 2.57
1626 1650 2.422597 CGGGTGTTGCACTAGATGAAA 58.577 47.619 0.00 0.00 34.40 2.69
1627 1651 2.416547 CGGGTGTTGCACTAGATGAAAG 59.583 50.000 0.00 0.00 34.40 2.62
1628 1652 3.674997 GGGTGTTGCACTAGATGAAAGA 58.325 45.455 0.00 0.00 34.40 2.52
1629 1653 4.072131 GGGTGTTGCACTAGATGAAAGAA 58.928 43.478 0.00 0.00 34.40 2.52
1630 1654 4.702131 GGGTGTTGCACTAGATGAAAGAAT 59.298 41.667 0.00 0.00 34.40 2.40
1631 1655 5.183904 GGGTGTTGCACTAGATGAAAGAATT 59.816 40.000 0.00 0.00 34.40 2.17
1632 1656 6.374333 GGGTGTTGCACTAGATGAAAGAATTA 59.626 38.462 0.00 0.00 34.40 1.40
1633 1657 7.067494 GGGTGTTGCACTAGATGAAAGAATTAT 59.933 37.037 0.00 0.00 34.40 1.28
1634 1658 8.462016 GGTGTTGCACTAGATGAAAGAATTATT 58.538 33.333 0.00 0.00 34.40 1.40
1659 1683 9.685828 TTATATCACGATGACGATTTGTATCAA 57.314 29.630 0.00 0.00 42.66 2.57
1660 1684 5.696260 TCACGATGACGATTTGTATCAAC 57.304 39.130 0.00 0.00 42.66 3.18
1661 1685 5.164954 TCACGATGACGATTTGTATCAACA 58.835 37.500 0.00 0.00 42.66 3.33
1662 1686 5.810074 TCACGATGACGATTTGTATCAACAT 59.190 36.000 0.00 0.00 42.66 2.71
1663 1687 6.975772 TCACGATGACGATTTGTATCAACATA 59.024 34.615 0.00 0.00 42.66 2.29
1664 1688 7.651704 TCACGATGACGATTTGTATCAACATAT 59.348 33.333 0.00 0.00 42.66 1.78
1665 1689 8.275632 CACGATGACGATTTGTATCAACATATT 58.724 33.333 0.00 0.00 42.66 1.28
1798 2445 2.797074 TGTTGTGGAATGCACATGTG 57.203 45.000 21.83 21.83 32.12 3.21
1812 2459 4.002982 GCACATGTGTTGGAGATCAAGTA 58.997 43.478 26.01 0.00 35.80 2.24
1813 2460 4.093998 GCACATGTGTTGGAGATCAAGTAG 59.906 45.833 26.01 0.00 35.80 2.57
1815 2462 6.398095 CACATGTGTTGGAGATCAAGTAGTA 58.602 40.000 18.03 0.00 35.80 1.82
1816 2463 6.873605 CACATGTGTTGGAGATCAAGTAGTAA 59.126 38.462 18.03 0.00 35.80 2.24
1871 3491 1.387295 GGCCCAACCTCTGCTAATGC 61.387 60.000 0.00 0.00 35.95 3.56
1872 3492 1.387295 GCCCAACCTCTGCTAATGCC 61.387 60.000 0.00 0.00 38.71 4.40
1873 3493 0.257039 CCCAACCTCTGCTAATGCCT 59.743 55.000 0.00 0.00 38.71 4.75
1874 3494 1.490490 CCCAACCTCTGCTAATGCCTA 59.510 52.381 0.00 0.00 38.71 3.93
1875 3495 2.092429 CCCAACCTCTGCTAATGCCTAA 60.092 50.000 0.00 0.00 38.71 2.69
1876 3496 3.435601 CCCAACCTCTGCTAATGCCTAAT 60.436 47.826 0.00 0.00 38.71 1.73
1877 3497 3.567164 CCAACCTCTGCTAATGCCTAATG 59.433 47.826 0.00 0.00 38.71 1.90
1907 3527 0.038166 AAGCACCATGACCCGACAAT 59.962 50.000 0.00 0.00 0.00 2.71
1910 3530 1.372582 CACCATGACCCGACAATCAG 58.627 55.000 0.00 0.00 0.00 2.90
1914 3534 3.198068 CCATGACCCGACAATCAGTAAG 58.802 50.000 0.00 0.00 0.00 2.34
1915 3535 3.198068 CATGACCCGACAATCAGTAAGG 58.802 50.000 0.00 0.00 0.00 2.69
1916 3536 1.066430 TGACCCGACAATCAGTAAGGC 60.066 52.381 0.00 0.00 0.00 4.35
1917 3537 0.981183 ACCCGACAATCAGTAAGGCA 59.019 50.000 0.00 0.00 0.00 4.75
1918 3538 1.349688 ACCCGACAATCAGTAAGGCAA 59.650 47.619 0.00 0.00 0.00 4.52
1919 3539 2.224670 ACCCGACAATCAGTAAGGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
1920 3540 3.016736 CCCGACAATCAGTAAGGCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
1921 3541 3.443681 CCCGACAATCAGTAAGGCAAATT 59.556 43.478 0.00 0.00 0.00 1.82
1922 3542 4.438744 CCCGACAATCAGTAAGGCAAATTC 60.439 45.833 0.00 0.00 0.00 2.17
1923 3543 4.396166 CCGACAATCAGTAAGGCAAATTCT 59.604 41.667 0.00 0.00 0.00 2.40
1924 3544 5.584649 CCGACAATCAGTAAGGCAAATTCTA 59.415 40.000 0.00 0.00 0.00 2.10
1925 3545 6.260936 CCGACAATCAGTAAGGCAAATTCTAT 59.739 38.462 0.00 0.00 0.00 1.98
1926 3546 7.201732 CCGACAATCAGTAAGGCAAATTCTATT 60.202 37.037 0.00 0.00 0.00 1.73
1927 3547 8.184192 CGACAATCAGTAAGGCAAATTCTATTT 58.816 33.333 0.00 0.00 0.00 1.40
1928 3548 9.294030 GACAATCAGTAAGGCAAATTCTATTTG 57.706 33.333 7.58 7.58 0.00 2.32
1929 3549 8.253113 ACAATCAGTAAGGCAAATTCTATTTGG 58.747 33.333 12.53 0.00 0.00 3.28
1933 3553 2.584492 GGCAAATTCTATTTGGCGCT 57.416 45.000 18.68 0.00 43.33 5.92
1934 3554 2.195922 GGCAAATTCTATTTGGCGCTG 58.804 47.619 18.68 0.00 43.33 5.18
1935 3555 1.589779 GCAAATTCTATTTGGCGCTGC 59.410 47.619 7.64 0.00 0.00 5.25
1936 3556 2.878580 CAAATTCTATTTGGCGCTGCA 58.121 42.857 7.64 0.00 0.00 4.41
1937 3557 2.855963 CAAATTCTATTTGGCGCTGCAG 59.144 45.455 10.11 10.11 0.00 4.41
1938 3558 1.027357 ATTCTATTTGGCGCTGCAGG 58.973 50.000 17.12 6.85 0.00 4.85
1939 3559 1.656818 TTCTATTTGGCGCTGCAGGC 61.657 55.000 17.12 16.58 37.64 4.85
1940 3560 2.360978 TATTTGGCGCTGCAGGCA 60.361 55.556 23.05 12.83 45.22 4.75
1941 3561 2.603135 CTATTTGGCGCTGCAGGCAC 62.603 60.000 23.05 15.07 46.56 5.01
1948 3568 2.671619 GCTGCAGGCACCCGTTAA 60.672 61.111 17.12 0.00 41.35 2.01
1949 3569 2.978018 GCTGCAGGCACCCGTTAAC 61.978 63.158 17.12 0.00 41.35 2.01
1950 3570 2.666862 TGCAGGCACCCGTTAACG 60.667 61.111 20.99 20.99 39.44 3.18
1951 3571 2.667199 GCAGGCACCCGTTAACGT 60.667 61.111 25.15 6.27 37.74 3.99
1952 3572 2.961669 GCAGGCACCCGTTAACGTG 61.962 63.158 25.15 17.63 37.74 4.49
1953 3573 1.595929 CAGGCACCCGTTAACGTGT 60.596 57.895 25.15 18.33 37.74 4.49
1954 3574 0.319727 CAGGCACCCGTTAACGTGTA 60.320 55.000 25.15 0.00 37.74 2.90
1955 3575 0.609662 AGGCACCCGTTAACGTGTAT 59.390 50.000 25.15 8.08 37.74 2.29
1956 3576 1.002315 AGGCACCCGTTAACGTGTATT 59.998 47.619 25.15 7.43 37.74 1.89
1957 3577 1.805943 GGCACCCGTTAACGTGTATTT 59.194 47.619 25.15 0.00 37.74 1.40
1958 3578 2.226200 GGCACCCGTTAACGTGTATTTT 59.774 45.455 25.15 0.00 37.74 1.82
1959 3579 3.227948 GCACCCGTTAACGTGTATTTTG 58.772 45.455 25.15 9.97 37.74 2.44
1960 3580 3.227948 CACCCGTTAACGTGTATTTTGC 58.772 45.455 25.15 0.00 37.74 3.68
1961 3581 2.877168 ACCCGTTAACGTGTATTTTGCA 59.123 40.909 25.15 0.00 37.74 4.08
1962 3582 3.314635 ACCCGTTAACGTGTATTTTGCAA 59.685 39.130 25.15 0.00 37.74 4.08
1963 3583 4.201990 ACCCGTTAACGTGTATTTTGCAAA 60.202 37.500 25.15 8.05 37.74 3.68
1964 3584 4.146788 CCCGTTAACGTGTATTTTGCAAAC 59.853 41.667 25.15 1.55 37.74 2.93
1965 3585 4.971220 CCGTTAACGTGTATTTTGCAAACT 59.029 37.500 25.15 9.52 37.74 2.66
1966 3586 6.134730 CCGTTAACGTGTATTTTGCAAACTA 58.865 36.000 25.15 8.37 37.74 2.24
1967 3587 6.632035 CCGTTAACGTGTATTTTGCAAACTAA 59.368 34.615 25.15 0.00 37.74 2.24
1968 3588 7.356638 CCGTTAACGTGTATTTTGCAAACTAAC 60.357 37.037 25.15 10.68 37.74 2.34
1969 3589 7.476348 GTTAACGTGTATTTTGCAAACTAACG 58.524 34.615 24.75 24.75 34.85 3.18
1970 3590 4.529446 ACGTGTATTTTGCAAACTAACGG 58.471 39.130 27.04 18.11 33.09 4.44
1971 3591 3.909574 CGTGTATTTTGCAAACTAACGGG 59.090 43.478 12.39 3.02 0.00 5.28
1972 3592 3.671459 GTGTATTTTGCAAACTAACGGGC 59.329 43.478 12.39 0.00 0.00 6.13
1973 3593 2.058913 ATTTTGCAAACTAACGGGCG 57.941 45.000 12.39 0.00 0.00 6.13
1974 3594 0.595310 TTTTGCAAACTAACGGGCGC 60.595 50.000 12.39 0.00 0.00 6.53
1975 3595 2.409241 TTTGCAAACTAACGGGCGCC 62.409 55.000 21.18 21.18 0.00 6.53
1976 3596 3.053896 GCAAACTAACGGGCGCCT 61.054 61.111 28.56 9.55 0.00 5.52
1977 3597 2.867472 CAAACTAACGGGCGCCTG 59.133 61.111 33.73 33.73 0.00 4.85
1978 3598 3.053896 AAACTAACGGGCGCCTGC 61.054 61.111 35.17 14.42 41.71 4.85
2003 3623 4.115199 GGCCGGCCCATCTCTGTT 62.115 66.667 36.64 0.00 0.00 3.16
2004 3624 2.742116 GGCCGGCCCATCTCTGTTA 61.742 63.158 36.64 0.00 0.00 2.41
2005 3625 1.227674 GCCGGCCCATCTCTGTTAG 60.228 63.158 18.11 0.00 0.00 2.34
2006 3626 1.686325 GCCGGCCCATCTCTGTTAGA 61.686 60.000 18.11 0.00 39.02 2.10
2007 3627 0.390860 CCGGCCCATCTCTGTTAGAG 59.609 60.000 0.00 0.00 43.64 2.43
2008 3628 1.115467 CGGCCCATCTCTGTTAGAGT 58.885 55.000 0.00 0.00 42.83 3.24
2009 3629 2.307768 CGGCCCATCTCTGTTAGAGTA 58.692 52.381 0.00 0.00 42.83 2.59
2010 3630 2.034812 CGGCCCATCTCTGTTAGAGTAC 59.965 54.545 0.00 0.00 42.83 2.73
2011 3631 3.031736 GGCCCATCTCTGTTAGAGTACA 58.968 50.000 5.81 0.00 42.83 2.90
2012 3632 3.643792 GGCCCATCTCTGTTAGAGTACAT 59.356 47.826 5.81 0.00 42.83 2.29
2013 3633 4.101741 GGCCCATCTCTGTTAGAGTACATT 59.898 45.833 5.81 0.00 42.83 2.71
2014 3634 5.053145 GCCCATCTCTGTTAGAGTACATTG 58.947 45.833 5.81 0.00 42.83 2.82
2015 3635 5.395768 GCCCATCTCTGTTAGAGTACATTGT 60.396 44.000 5.81 0.00 42.83 2.71
2016 3636 6.183360 GCCCATCTCTGTTAGAGTACATTGTA 60.183 42.308 5.81 0.00 42.83 2.41
2017 3637 7.472100 GCCCATCTCTGTTAGAGTACATTGTAT 60.472 40.741 0.00 0.00 42.83 2.29
2018 3638 9.078990 CCCATCTCTGTTAGAGTACATTGTATA 57.921 37.037 0.00 0.00 42.83 1.47
2023 3643 9.544314 CTCTGTTAGAGTACATTGTATATACGC 57.456 37.037 8.33 0.00 37.57 4.42
2024 3644 8.509690 TCTGTTAGAGTACATTGTATATACGCC 58.490 37.037 8.33 0.00 0.00 5.68
2025 3645 7.300320 TGTTAGAGTACATTGTATATACGCCG 58.700 38.462 8.33 1.69 0.00 6.46
2026 3646 5.954296 AGAGTACATTGTATATACGCCGT 57.046 39.130 8.33 0.00 0.00 5.68
2027 3647 8.443160 GTTAGAGTACATTGTATATACGCCGTA 58.557 37.037 0.00 0.00 0.00 4.02
2028 3648 6.835914 AGAGTACATTGTATATACGCCGTAC 58.164 40.000 20.26 20.26 31.88 3.67
2029 3649 6.652481 AGAGTACATTGTATATACGCCGTACT 59.348 38.462 25.60 25.60 38.41 2.73
2030 3650 7.819415 AGAGTACATTGTATATACGCCGTACTA 59.181 37.037 25.48 0.00 37.13 1.82
2031 3651 7.743104 AGTACATTGTATATACGCCGTACTAC 58.257 38.462 24.84 5.55 36.20 2.73
2032 3652 6.558771 ACATTGTATATACGCCGTACTACA 57.441 37.500 14.17 14.17 0.00 2.74
2033 3653 6.373779 ACATTGTATATACGCCGTACTACAC 58.626 40.000 16.58 6.97 0.00 2.90
2034 3654 5.356882 TTGTATATACGCCGTACTACACC 57.643 43.478 16.58 0.00 0.00 4.16
2035 3655 4.641396 TGTATATACGCCGTACTACACCT 58.359 43.478 14.17 0.00 0.00 4.00
2036 3656 4.452114 TGTATATACGCCGTACTACACCTG 59.548 45.833 14.17 0.00 0.00 4.00
2037 3657 1.755179 ATACGCCGTACTACACCTGT 58.245 50.000 0.00 0.00 0.00 4.00
2038 3658 2.394930 TACGCCGTACTACACCTGTA 57.605 50.000 0.00 0.00 0.00 2.74
2039 3659 1.755179 ACGCCGTACTACACCTGTAT 58.245 50.000 0.00 0.00 0.00 2.29
2040 3660 2.094675 ACGCCGTACTACACCTGTATT 58.905 47.619 0.00 0.00 0.00 1.89
2041 3661 2.098117 ACGCCGTACTACACCTGTATTC 59.902 50.000 0.00 0.00 0.00 1.75
2042 3662 2.724349 GCCGTACTACACCTGTATTCG 58.276 52.381 0.00 0.00 0.00 3.34
2043 3663 2.542411 GCCGTACTACACCTGTATTCGG 60.542 54.545 13.75 13.75 39.00 4.30
2044 3664 2.684881 CCGTACTACACCTGTATTCGGT 59.315 50.000 11.54 0.00 35.43 4.69
2045 3665 3.242870 CCGTACTACACCTGTATTCGGTC 60.243 52.174 11.54 0.00 35.43 4.79
2046 3666 3.374988 CGTACTACACCTGTATTCGGTCA 59.625 47.826 0.00 0.00 30.82 4.02
2047 3667 4.142622 CGTACTACACCTGTATTCGGTCAA 60.143 45.833 0.00 0.00 30.82 3.18
2048 3668 4.184079 ACTACACCTGTATTCGGTCAAC 57.816 45.455 0.00 0.00 30.82 3.18
2049 3669 2.467566 ACACCTGTATTCGGTCAACC 57.532 50.000 0.00 0.00 30.82 3.77
2050 3670 1.975680 ACACCTGTATTCGGTCAACCT 59.024 47.619 0.00 0.00 30.82 3.50
2051 3671 2.028385 ACACCTGTATTCGGTCAACCTC 60.028 50.000 0.00 0.00 30.82 3.85
2052 3672 2.233922 CACCTGTATTCGGTCAACCTCT 59.766 50.000 0.00 0.00 30.82 3.69
2053 3673 3.446161 CACCTGTATTCGGTCAACCTCTA 59.554 47.826 0.00 0.00 30.82 2.43
2054 3674 4.099573 CACCTGTATTCGGTCAACCTCTAT 59.900 45.833 0.00 0.00 30.82 1.98
2055 3675 5.301045 CACCTGTATTCGGTCAACCTCTATA 59.699 44.000 0.00 0.00 30.82 1.31
2056 3676 5.301298 ACCTGTATTCGGTCAACCTCTATAC 59.699 44.000 0.00 3.68 0.00 1.47
2057 3677 5.428496 TGTATTCGGTCAACCTCTATACG 57.572 43.478 0.00 0.00 30.54 3.06
2058 3678 4.883585 TGTATTCGGTCAACCTCTATACGT 59.116 41.667 0.00 0.00 30.54 3.57
2059 3679 3.770263 TTCGGTCAACCTCTATACGTG 57.230 47.619 0.00 0.00 0.00 4.49
2060 3680 2.715046 TCGGTCAACCTCTATACGTGT 58.285 47.619 0.00 0.00 0.00 4.49
2061 3681 2.421073 TCGGTCAACCTCTATACGTGTG 59.579 50.000 0.00 0.00 0.00 3.82
2062 3682 2.421073 CGGTCAACCTCTATACGTGTGA 59.579 50.000 0.00 0.00 0.00 3.58
2063 3683 3.487042 CGGTCAACCTCTATACGTGTGAG 60.487 52.174 0.00 2.74 0.00 3.51
2064 3684 3.442977 GGTCAACCTCTATACGTGTGAGT 59.557 47.826 0.00 0.00 0.00 3.41
2065 3685 4.413087 GTCAACCTCTATACGTGTGAGTG 58.587 47.826 0.00 0.00 0.00 3.51
2066 3686 3.119602 TCAACCTCTATACGTGTGAGTGC 60.120 47.826 0.00 0.00 0.00 4.40
2067 3687 1.400846 ACCTCTATACGTGTGAGTGCG 59.599 52.381 0.00 0.00 0.00 5.34
2068 3688 1.400846 CCTCTATACGTGTGAGTGCGT 59.599 52.381 0.00 0.00 44.02 5.24
2069 3689 2.441462 CTCTATACGTGTGAGTGCGTG 58.559 52.381 0.00 0.00 41.68 5.34
2070 3690 1.808343 TCTATACGTGTGAGTGCGTGT 59.192 47.619 0.00 0.00 41.68 4.49
2071 3691 1.911464 CTATACGTGTGAGTGCGTGTG 59.089 52.381 0.00 0.00 41.68 3.82
2072 3692 0.312729 ATACGTGTGAGTGCGTGTGA 59.687 50.000 0.00 0.00 41.68 3.58
2073 3693 0.312729 TACGTGTGAGTGCGTGTGAT 59.687 50.000 0.00 0.00 41.68 3.06
2074 3694 0.939577 ACGTGTGAGTGCGTGTGATC 60.940 55.000 0.00 0.00 40.03 2.92
2075 3695 1.775344 GTGTGAGTGCGTGTGATCG 59.225 57.895 0.00 0.00 0.00 3.69
2076 3696 0.939577 GTGTGAGTGCGTGTGATCGT 60.940 55.000 0.00 0.00 0.00 3.73
2077 3697 0.939106 TGTGAGTGCGTGTGATCGTG 60.939 55.000 0.00 0.00 0.00 4.35
2078 3698 1.372872 TGAGTGCGTGTGATCGTGG 60.373 57.895 0.00 0.00 0.00 4.94
2079 3699 2.048222 AGTGCGTGTGATCGTGGG 60.048 61.111 0.00 0.00 0.00 4.61
2080 3700 2.048597 GTGCGTGTGATCGTGGGA 60.049 61.111 0.00 0.00 0.00 4.37
2081 3701 2.048597 TGCGTGTGATCGTGGGAC 60.049 61.111 0.00 0.00 0.00 4.46
2082 3702 2.048597 GCGTGTGATCGTGGGACA 60.049 61.111 0.00 0.00 0.00 4.02
2199 3820 2.440409 GTACCCTTGTAGACCGACAGA 58.560 52.381 0.00 0.00 0.00 3.41
2404 4025 1.823169 TTCTACCGTCGCAGGGCTTT 61.823 55.000 1.26 0.00 35.02 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.464997 GTGAAATGAAGGTGCGGTCTC 59.535 52.381 0.00 0.00 0.00 3.36
37 38 0.458889 CGGCGATAAGACCCGTGAAA 60.459 55.000 0.00 0.00 37.36 2.69
105 106 1.533469 ATATCCTACGGAGGCGGCAC 61.533 60.000 9.59 4.32 43.40 5.01
106 107 1.228769 ATATCCTACGGAGGCGGCA 60.229 57.895 9.59 0.00 43.40 5.69
113 114 4.203342 ACCCCTAAACATATCCTACGGA 57.797 45.455 0.00 0.00 35.55 4.69
160 161 5.227805 CACGGCAGATTTTCATTACATTTCG 59.772 40.000 0.00 0.00 0.00 3.46
178 179 2.088423 GGGATTCATACAAACACGGCA 58.912 47.619 0.00 0.00 0.00 5.69
216 217 3.650369 GTGCAAACACGGACGGAT 58.350 55.556 0.00 0.00 36.98 4.18
224 225 5.689819 ACTAGATGAAATTCGTGCAAACAC 58.310 37.500 0.00 0.00 43.76 3.32
225 226 5.940192 ACTAGATGAAATTCGTGCAAACA 57.060 34.783 0.00 0.00 0.00 2.83
245 246 9.271828 ACATTTCAAACTCTTTTTCAACAAACT 57.728 25.926 0.00 0.00 0.00 2.66
323 324 2.656069 ATCTGTTCGTGGACGGGGG 61.656 63.158 0.00 0.00 40.29 5.40
324 325 1.447838 CATCTGTTCGTGGACGGGG 60.448 63.158 0.00 0.00 40.29 5.73
325 326 2.100631 GCATCTGTTCGTGGACGGG 61.101 63.158 0.00 0.00 40.29 5.28
326 327 1.354337 CTGCATCTGTTCGTGGACGG 61.354 60.000 0.00 0.00 40.29 4.79
327 328 1.354337 CCTGCATCTGTTCGTGGACG 61.354 60.000 0.00 0.00 41.45 4.79
328 329 0.037326 TCCTGCATCTGTTCGTGGAC 60.037 55.000 0.00 0.00 0.00 4.02
329 330 0.247460 CTCCTGCATCTGTTCGTGGA 59.753 55.000 0.00 0.00 0.00 4.02
330 331 0.247460 TCTCCTGCATCTGTTCGTGG 59.753 55.000 0.00 0.00 0.00 4.94
331 332 2.084610 TTCTCCTGCATCTGTTCGTG 57.915 50.000 0.00 0.00 0.00 4.35
332 333 2.839486 TTTCTCCTGCATCTGTTCGT 57.161 45.000 0.00 0.00 0.00 3.85
333 334 4.691860 AATTTTCTCCTGCATCTGTTCG 57.308 40.909 0.00 0.00 0.00 3.95
334 335 4.624452 GCAAATTTTCTCCTGCATCTGTTC 59.376 41.667 0.00 0.00 34.87 3.18
335 336 4.563061 GCAAATTTTCTCCTGCATCTGTT 58.437 39.130 0.00 0.00 34.87 3.16
336 337 3.366679 CGCAAATTTTCTCCTGCATCTGT 60.367 43.478 0.00 0.00 34.39 3.41
337 338 3.176708 CGCAAATTTTCTCCTGCATCTG 58.823 45.455 0.00 0.00 34.39 2.90
338 339 2.165030 CCGCAAATTTTCTCCTGCATCT 59.835 45.455 0.00 0.00 34.39 2.90
339 340 2.533266 CCGCAAATTTTCTCCTGCATC 58.467 47.619 0.00 0.00 34.39 3.91
340 341 1.205417 CCCGCAAATTTTCTCCTGCAT 59.795 47.619 0.00 0.00 34.39 3.96
341 342 0.602562 CCCGCAAATTTTCTCCTGCA 59.397 50.000 0.00 0.00 34.39 4.41
342 343 0.603065 ACCCGCAAATTTTCTCCTGC 59.397 50.000 0.00 0.00 0.00 4.85
343 344 2.676076 CAACCCGCAAATTTTCTCCTG 58.324 47.619 0.00 0.00 0.00 3.86
365 366 2.308570 ACATGTTAGGGCATCTCCAACA 59.691 45.455 0.00 0.00 34.71 3.33
443 444 9.599866 GAAAAATATCGAAATGAGGGGAAAAAT 57.400 29.630 0.00 0.00 0.00 1.82
511 512 1.261619 CGTGAAGAATATTCTGCGGCC 59.738 52.381 18.61 7.90 35.49 6.13
771 779 3.199190 TTTAAGGCGCGGGCGATG 61.199 61.111 18.30 0.00 42.83 3.84
958 982 4.376279 CGATCTTGACGTCTATTTAGCGTC 59.624 45.833 17.92 18.84 44.81 5.19
1008 1032 2.209064 GAGGTAGTCGAAGGTGCGCA 62.209 60.000 5.66 5.66 0.00 6.09
1010 1034 0.179161 CAGAGGTAGTCGAAGGTGCG 60.179 60.000 0.00 0.00 0.00 5.34
1365 1389 2.584391 GCTCCACCCGTTCTCCAGT 61.584 63.158 0.00 0.00 0.00 4.00
1632 1656 9.855021 TGATACAAATCGTCATCGTGATATAAT 57.145 29.630 0.00 0.00 38.33 1.28
1633 1657 9.685828 TTGATACAAATCGTCATCGTGATATAA 57.314 29.630 0.00 0.00 38.33 0.98
1634 1658 9.124807 GTTGATACAAATCGTCATCGTGATATA 57.875 33.333 0.00 0.00 38.33 0.86
1635 1659 7.651704 TGTTGATACAAATCGTCATCGTGATAT 59.348 33.333 0.00 0.00 38.33 1.63
1636 1660 6.975772 TGTTGATACAAATCGTCATCGTGATA 59.024 34.615 0.00 0.00 38.33 2.15
1637 1661 5.810074 TGTTGATACAAATCGTCATCGTGAT 59.190 36.000 0.00 0.00 38.33 3.06
1638 1662 5.164954 TGTTGATACAAATCGTCATCGTGA 58.835 37.500 0.00 0.00 38.33 4.35
1640 1664 7.946655 ATATGTTGATACAAATCGTCATCGT 57.053 32.000 0.00 0.00 37.91 3.73
1734 2110 9.914834 ACTTCTTAGAGAGTAGAGATATTGTGT 57.085 33.333 0.00 0.00 0.00 3.72
1741 2124 7.867921 TCCTCAACTTCTTAGAGAGTAGAGAT 58.132 38.462 0.00 0.00 0.00 2.75
1748 2395 6.683974 CTCTCTCCTCAACTTCTTAGAGAG 57.316 45.833 11.52 11.52 46.14 3.20
1798 2445 8.475639 TGAGGTTATTACTACTTGATCTCCAAC 58.524 37.037 0.00 0.00 0.00 3.77
1871 3491 2.246719 CTTCGAAGAGGCCCATTAGG 57.753 55.000 20.74 0.00 38.43 2.69
1907 3527 5.163663 CGCCAAATAGAATTTGCCTTACTGA 60.164 40.000 6.82 0.00 0.00 3.41
1910 3530 3.796717 GCGCCAAATAGAATTTGCCTTAC 59.203 43.478 0.00 0.00 0.00 2.34
1914 3534 2.195922 CAGCGCCAAATAGAATTTGCC 58.804 47.619 2.29 0.00 0.00 4.52
1915 3535 1.589779 GCAGCGCCAAATAGAATTTGC 59.410 47.619 2.29 0.00 0.00 3.68
1916 3536 2.855963 CTGCAGCGCCAAATAGAATTTG 59.144 45.455 2.29 5.56 0.00 2.32
1917 3537 2.159198 CCTGCAGCGCCAAATAGAATTT 60.159 45.455 8.66 0.00 0.00 1.82
1918 3538 1.406539 CCTGCAGCGCCAAATAGAATT 59.593 47.619 8.66 0.00 0.00 2.17
1919 3539 1.027357 CCTGCAGCGCCAAATAGAAT 58.973 50.000 8.66 0.00 0.00 2.40
1920 3540 1.656818 GCCTGCAGCGCCAAATAGAA 61.657 55.000 8.66 0.00 0.00 2.10
1921 3541 2.114670 GCCTGCAGCGCCAAATAGA 61.115 57.895 8.66 0.00 0.00 1.98
1922 3542 2.410469 GCCTGCAGCGCCAAATAG 59.590 61.111 8.66 0.00 0.00 1.73
1923 3543 2.699768 GTGCCTGCAGCGCCAAATA 61.700 57.895 20.12 3.21 46.76 1.40
1924 3544 4.060038 GTGCCTGCAGCGCCAAAT 62.060 61.111 20.12 0.00 46.76 2.32
1931 3551 2.671619 TTAACGGGTGCCTGCAGC 60.672 61.111 8.66 12.66 43.00 5.25
1932 3552 2.677003 CGTTAACGGGTGCCTGCAG 61.677 63.158 20.24 6.78 35.37 4.41
1933 3553 2.666862 CGTTAACGGGTGCCTGCA 60.667 61.111 20.24 0.00 35.37 4.41
1934 3554 2.667199 ACGTTAACGGGTGCCTGC 60.667 61.111 29.81 0.00 44.95 4.85
1935 3555 3.249999 CACGTTAACGGGTGCCTG 58.750 61.111 29.81 15.14 44.95 4.85
1942 3562 4.971220 AGTTTGCAAAATACACGTTAACGG 59.029 37.500 29.81 20.71 44.95 4.44
1943 3563 7.476348 GTTAGTTTGCAAAATACACGTTAACG 58.524 34.615 25.68 25.68 46.33 3.18
1944 3564 7.356638 CCGTTAGTTTGCAAAATACACGTTAAC 60.357 37.037 29.52 20.98 29.75 2.01
1945 3565 6.632035 CCGTTAGTTTGCAAAATACACGTTAA 59.368 34.615 29.52 14.71 29.75 2.01
1946 3566 6.134730 CCGTTAGTTTGCAAAATACACGTTA 58.865 36.000 29.52 14.01 29.75 3.18
1947 3567 4.971220 CCGTTAGTTTGCAAAATACACGTT 59.029 37.500 29.52 8.45 29.75 3.99
1948 3568 4.529446 CCGTTAGTTTGCAAAATACACGT 58.471 39.130 29.52 11.88 29.75 4.49
1949 3569 3.909574 CCCGTTAGTTTGCAAAATACACG 59.090 43.478 27.62 27.62 0.00 4.49
1950 3570 3.671459 GCCCGTTAGTTTGCAAAATACAC 59.329 43.478 18.20 16.60 0.00 2.90
1951 3571 3.609644 CGCCCGTTAGTTTGCAAAATACA 60.610 43.478 18.20 7.88 0.00 2.29
1952 3572 2.912345 CGCCCGTTAGTTTGCAAAATAC 59.088 45.455 18.20 12.77 0.00 1.89
1953 3573 2.668834 GCGCCCGTTAGTTTGCAAAATA 60.669 45.455 14.67 14.80 0.00 1.40
1954 3574 1.933052 GCGCCCGTTAGTTTGCAAAAT 60.933 47.619 17.11 17.11 0.00 1.82
1955 3575 0.595310 GCGCCCGTTAGTTTGCAAAA 60.595 50.000 14.67 0.00 0.00 2.44
1956 3576 1.008309 GCGCCCGTTAGTTTGCAAA 60.008 52.632 8.05 8.05 0.00 3.68
1957 3577 2.640421 GCGCCCGTTAGTTTGCAA 59.360 55.556 0.00 0.00 0.00 4.08
1958 3578 3.358707 GGCGCCCGTTAGTTTGCA 61.359 61.111 18.11 0.00 0.00 4.08
1959 3579 3.053896 AGGCGCCCGTTAGTTTGC 61.054 61.111 26.15 0.00 0.00 3.68
1960 3580 2.867472 CAGGCGCCCGTTAGTTTG 59.133 61.111 26.15 8.46 0.00 2.93
1961 3581 3.053896 GCAGGCGCCCGTTAGTTT 61.054 61.111 26.15 0.00 0.00 2.66
1986 3606 2.666596 CTAACAGAGATGGGCCGGCC 62.667 65.000 38.57 38.57 0.00 6.13
1987 3607 1.227674 CTAACAGAGATGGGCCGGC 60.228 63.158 21.18 21.18 0.00 6.13
1988 3608 0.390860 CTCTAACAGAGATGGGCCGG 59.609 60.000 0.00 0.00 45.07 6.13
1989 3609 1.115467 ACTCTAACAGAGATGGGCCG 58.885 55.000 10.09 0.00 45.07 6.13
1990 3610 3.031736 TGTACTCTAACAGAGATGGGCC 58.968 50.000 10.09 0.00 45.07 5.80
1991 3611 4.946478 ATGTACTCTAACAGAGATGGGC 57.054 45.455 10.09 0.00 45.07 5.36
1992 3612 6.227298 ACAATGTACTCTAACAGAGATGGG 57.773 41.667 10.09 0.00 45.07 4.00
1998 3618 8.509690 GGCGTATATACAATGTACTCTAACAGA 58.490 37.037 13.22 0.00 31.70 3.41
1999 3619 7.480855 CGGCGTATATACAATGTACTCTAACAG 59.519 40.741 13.22 0.00 31.70 3.16
2000 3620 7.041167 ACGGCGTATATACAATGTACTCTAACA 60.041 37.037 12.58 0.00 0.00 2.41
2001 3621 7.301054 ACGGCGTATATACAATGTACTCTAAC 58.699 38.462 12.58 0.00 0.00 2.34
2002 3622 7.439157 ACGGCGTATATACAATGTACTCTAA 57.561 36.000 12.58 0.00 0.00 2.10
2003 3623 7.819415 AGTACGGCGTATATACAATGTACTCTA 59.181 37.037 23.84 0.00 34.53 2.43
2004 3624 5.954296 ACGGCGTATATACAATGTACTCT 57.046 39.130 12.58 0.00 0.00 3.24
2005 3625 6.835914 AGTACGGCGTATATACAATGTACTC 58.164 40.000 23.84 4.77 34.53 2.59
2006 3626 6.808008 AGTACGGCGTATATACAATGTACT 57.192 37.500 23.84 22.64 34.66 2.73
2007 3627 7.478667 GTGTAGTACGGCGTATATACAATGTAC 59.521 40.741 31.62 21.93 30.63 2.90
2008 3628 7.360861 GGTGTAGTACGGCGTATATACAATGTA 60.361 40.741 31.62 17.31 30.63 2.29
2009 3629 6.373779 GTGTAGTACGGCGTATATACAATGT 58.626 40.000 31.62 10.86 30.63 2.71
2010 3630 5.796935 GGTGTAGTACGGCGTATATACAATG 59.203 44.000 31.62 4.07 30.63 2.82
2011 3631 5.707298 AGGTGTAGTACGGCGTATATACAAT 59.293 40.000 31.62 24.70 30.63 2.71
2012 3632 5.049474 CAGGTGTAGTACGGCGTATATACAA 60.049 44.000 31.62 20.80 30.63 2.41
2013 3633 4.452114 CAGGTGTAGTACGGCGTATATACA 59.548 45.833 28.81 28.81 0.00 2.29
2014 3634 4.452455 ACAGGTGTAGTACGGCGTATATAC 59.548 45.833 23.84 25.07 0.00 1.47
2015 3635 4.641396 ACAGGTGTAGTACGGCGTATATA 58.359 43.478 23.84 15.82 0.00 0.86
2016 3636 3.480470 ACAGGTGTAGTACGGCGTATAT 58.520 45.455 23.84 16.84 0.00 0.86
2017 3637 2.917933 ACAGGTGTAGTACGGCGTATA 58.082 47.619 23.84 13.10 0.00 1.47
2018 3638 1.755179 ACAGGTGTAGTACGGCGTAT 58.245 50.000 23.84 14.07 0.00 3.06
2019 3639 2.394930 TACAGGTGTAGTACGGCGTA 57.605 50.000 16.97 16.97 0.00 4.42
2020 3640 1.755179 ATACAGGTGTAGTACGGCGT 58.245 50.000 19.64 19.64 33.52 5.68
2021 3641 2.724349 GAATACAGGTGTAGTACGGCG 58.276 52.381 4.80 4.80 33.52 6.46
2022 3642 2.542411 CCGAATACAGGTGTAGTACGGC 60.542 54.545 14.66 0.00 37.47 5.68
2023 3643 2.684881 ACCGAATACAGGTGTAGTACGG 59.315 50.000 20.52 20.52 43.17 4.02
2024 3644 3.374988 TGACCGAATACAGGTGTAGTACG 59.625 47.826 0.00 2.24 43.01 3.67
2025 3645 4.970662 TGACCGAATACAGGTGTAGTAC 57.029 45.455 0.00 0.00 43.01 2.73
2026 3646 4.158394 GGTTGACCGAATACAGGTGTAGTA 59.842 45.833 0.00 0.00 43.01 1.82
2027 3647 3.056322 GGTTGACCGAATACAGGTGTAGT 60.056 47.826 0.00 0.00 43.01 2.73
2028 3648 3.194968 AGGTTGACCGAATACAGGTGTAG 59.805 47.826 0.00 0.00 43.01 2.74
2029 3649 3.167485 AGGTTGACCGAATACAGGTGTA 58.833 45.455 0.00 0.00 43.01 2.90
2030 3650 1.975680 AGGTTGACCGAATACAGGTGT 59.024 47.619 0.00 0.00 43.01 4.16
2031 3651 2.233922 AGAGGTTGACCGAATACAGGTG 59.766 50.000 0.00 0.00 43.01 4.00
2032 3652 2.537143 AGAGGTTGACCGAATACAGGT 58.463 47.619 0.00 0.00 46.16 4.00
2033 3653 4.939052 ATAGAGGTTGACCGAATACAGG 57.061 45.455 0.00 0.00 42.08 4.00
2034 3654 5.008415 ACGTATAGAGGTTGACCGAATACAG 59.992 44.000 15.99 12.64 42.08 2.74
2035 3655 4.883585 ACGTATAGAGGTTGACCGAATACA 59.116 41.667 15.99 0.00 42.08 2.29
2036 3656 5.210715 CACGTATAGAGGTTGACCGAATAC 58.789 45.833 0.00 10.20 42.08 1.89
2037 3657 4.883585 ACACGTATAGAGGTTGACCGAATA 59.116 41.667 0.00 0.00 42.08 1.75
2038 3658 3.698040 ACACGTATAGAGGTTGACCGAAT 59.302 43.478 0.00 0.00 42.08 3.34
2039 3659 3.084039 ACACGTATAGAGGTTGACCGAA 58.916 45.455 0.00 0.00 42.08 4.30
2040 3660 2.421073 CACACGTATAGAGGTTGACCGA 59.579 50.000 0.00 0.00 42.08 4.69
2041 3661 2.421073 TCACACGTATAGAGGTTGACCG 59.579 50.000 0.00 0.00 42.08 4.79
2042 3662 3.442977 ACTCACACGTATAGAGGTTGACC 59.557 47.826 13.48 0.00 33.76 4.02
2043 3663 4.413087 CACTCACACGTATAGAGGTTGAC 58.587 47.826 13.48 0.00 33.76 3.18
2044 3664 3.119602 GCACTCACACGTATAGAGGTTGA 60.120 47.826 13.48 0.00 33.76 3.18
2045 3665 3.179830 GCACTCACACGTATAGAGGTTG 58.820 50.000 13.48 6.65 33.76 3.77
2046 3666 2.159421 CGCACTCACACGTATAGAGGTT 60.159 50.000 13.48 0.00 33.76 3.50
2047 3667 1.400846 CGCACTCACACGTATAGAGGT 59.599 52.381 13.48 0.00 33.76 3.85
2048 3668 1.400846 ACGCACTCACACGTATAGAGG 59.599 52.381 13.48 5.92 41.48 3.69
2049 3669 2.159558 ACACGCACTCACACGTATAGAG 60.160 50.000 8.90 8.90 41.32 2.43
2050 3670 1.808343 ACACGCACTCACACGTATAGA 59.192 47.619 0.00 0.00 41.32 1.98
2051 3671 1.911464 CACACGCACTCACACGTATAG 59.089 52.381 0.00 0.00 41.32 1.31
2052 3672 1.536331 TCACACGCACTCACACGTATA 59.464 47.619 0.00 0.00 41.32 1.47
2053 3673 0.312729 TCACACGCACTCACACGTAT 59.687 50.000 0.00 0.00 41.32 3.06
2054 3674 0.312729 ATCACACGCACTCACACGTA 59.687 50.000 0.00 0.00 41.32 3.57
2055 3675 0.939577 GATCACACGCACTCACACGT 60.940 55.000 0.00 0.00 44.75 4.49
2056 3676 1.775344 GATCACACGCACTCACACG 59.225 57.895 0.00 0.00 0.00 4.49
2057 3677 0.939577 ACGATCACACGCACTCACAC 60.940 55.000 0.00 0.00 36.70 3.82
2058 3678 0.939106 CACGATCACACGCACTCACA 60.939 55.000 0.00 0.00 36.70 3.58
2059 3679 1.617755 CCACGATCACACGCACTCAC 61.618 60.000 0.00 0.00 36.70 3.51
2060 3680 1.372872 CCACGATCACACGCACTCA 60.373 57.895 0.00 0.00 36.70 3.41
2061 3681 2.094659 CCCACGATCACACGCACTC 61.095 63.158 0.00 0.00 36.70 3.51
2062 3682 2.048222 CCCACGATCACACGCACT 60.048 61.111 0.00 0.00 36.70 4.40
2063 3683 2.048597 TCCCACGATCACACGCAC 60.049 61.111 0.00 0.00 36.70 5.34
2064 3684 2.048597 GTCCCACGATCACACGCA 60.049 61.111 0.00 0.00 36.70 5.24
2065 3685 2.048597 TGTCCCACGATCACACGC 60.049 61.111 0.00 0.00 36.70 5.34
2066 3686 3.856508 GTGTCCCACGATCACACG 58.143 61.111 0.00 0.00 39.31 4.49
2075 3695 2.665777 CGACATGATCGTGTCCCAC 58.334 57.895 32.49 15.89 46.25 4.61
2084 3704 1.407979 ACTACGTTCCCCGACATGATC 59.592 52.381 0.00 0.00 40.70 2.92
2085 3705 1.481871 ACTACGTTCCCCGACATGAT 58.518 50.000 0.00 0.00 40.70 2.45
2086 3706 2.127271 TACTACGTTCCCCGACATGA 57.873 50.000 0.00 0.00 40.70 3.07
2092 3712 5.610235 TTTTGAAATTACTACGTTCCCCG 57.390 39.130 0.00 0.00 44.03 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.