Multiple sequence alignment - TraesCS7A01G449300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G449300 chr7A 100.000 2431 0 0 1 2431 643298519 643296089 0.000000e+00 4490.0
1 TraesCS7A01G449300 chr7A 83.841 427 32 20 47 438 642903033 642903457 2.950000e-99 372.0
2 TraesCS7A01G449300 chr7A 86.260 262 20 6 1 257 643242969 643242719 1.110000e-68 270.0
3 TraesCS7A01G449300 chr7B 84.732 858 73 25 935 1761 605877411 605876581 0.000000e+00 806.0
4 TraesCS7A01G449300 chr7B 83.776 715 41 33 261 940 605878140 605877466 2.070000e-170 608.0
5 TraesCS7A01G449300 chr7B 88.973 263 23 4 1 260 605872494 605872235 1.080000e-83 320.0
6 TraesCS7A01G449300 chr7B 97.468 158 4 0 95 252 605112097 605112254 1.110000e-68 270.0
7 TraesCS7A01G449300 chr7B 80.371 377 46 20 17 375 605770924 605770558 6.670000e-66 261.0
8 TraesCS7A01G449300 chr7B 79.082 392 64 9 2053 2431 605876272 605875886 1.120000e-63 254.0
9 TraesCS7A01G449300 chr7D 87.689 463 20 16 35 466 557779277 557778821 2.790000e-139 505.0
10 TraesCS7A01G449300 chr7D 97.468 158 4 0 95 252 557348110 557348267 1.110000e-68 270.0
11 TraesCS7A01G449300 chr7D 89.706 68 2 1 260 322 557348307 557348374 5.570000e-12 82.4
12 TraesCS7A01G449300 chrUn 76.812 414 63 27 50 444 86733632 86734031 4.100000e-48 202.0
13 TraesCS7A01G449300 chr6D 86.667 135 16 2 97 230 88832113 88831980 5.420000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G449300 chr7A 643296089 643298519 2430 True 4490 4490 100.00000 1 2431 1 chr7A.!!$R2 2430
1 TraesCS7A01G449300 chr7B 605872235 605878140 5905 True 497 806 84.14075 1 2431 4 chr7B.!!$R2 2430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.02877 CCGACGAGCTCATCTCTGTC 59.971 60.0 15.4 10.52 39.7 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2190 0.111253 CTGCCACCTTCCCTTGAGTT 59.889 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.465403 CTCGTGGCCTGGGAGGAG 61.465 72.222 3.32 0.00 37.67 3.69
49 50 3.086600 GTGGCCTGGGAGGAGGAG 61.087 72.222 3.32 0.00 37.67 3.69
50 51 4.421554 TGGCCTGGGAGGAGGAGG 62.422 72.222 3.32 0.00 37.67 4.30
51 52 4.095400 GGCCTGGGAGGAGGAGGA 62.095 72.222 0.00 0.00 37.67 3.71
52 53 2.445654 GCCTGGGAGGAGGAGGAG 60.446 72.222 0.00 0.00 37.67 3.69
53 54 2.285180 CCTGGGAGGAGGAGGAGG 59.715 72.222 0.00 0.00 37.67 4.30
54 55 2.641746 CCTGGGAGGAGGAGGAGGT 61.642 68.421 0.00 0.00 37.67 3.85
55 56 1.382420 CTGGGAGGAGGAGGAGGTG 60.382 68.421 0.00 0.00 0.00 4.00
56 57 2.041405 GGGAGGAGGAGGAGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
57 58 2.637640 GGGAGGAGGAGGAGGTGGA 61.638 68.421 0.00 0.00 0.00 4.02
58 59 1.075600 GGAGGAGGAGGAGGTGGAG 60.076 68.421 0.00 0.00 0.00 3.86
59 60 1.075600 GAGGAGGAGGAGGTGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
60 61 1.864559 AGGAGGAGGAGGTGGAGGT 60.865 63.158 0.00 0.00 0.00 3.85
61 62 1.687493 GGAGGAGGAGGTGGAGGTG 60.687 68.421 0.00 0.00 0.00 4.00
62 63 1.388531 GAGGAGGAGGTGGAGGTGA 59.611 63.158 0.00 0.00 0.00 4.02
63 64 0.686112 GAGGAGGAGGTGGAGGTGAG 60.686 65.000 0.00 0.00 0.00 3.51
64 65 1.687493 GGAGGAGGTGGAGGTGAGG 60.687 68.421 0.00 0.00 0.00 3.86
65 66 1.687493 GAGGAGGTGGAGGTGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
66 67 2.169590 GAGGAGGTGGAGGTGAGGGA 62.170 65.000 0.00 0.00 0.00 4.20
67 68 1.990614 GGAGGTGGAGGTGAGGGAC 60.991 68.421 0.00 0.00 0.00 4.46
68 69 2.283966 AGGTGGAGGTGAGGGACG 60.284 66.667 0.00 0.00 0.00 4.79
69 70 4.083862 GGTGGAGGTGAGGGACGC 62.084 72.222 0.00 0.00 0.00 5.19
111 112 4.849329 GACGGCGCGGTGGTAGAG 62.849 72.222 26.24 0.00 0.00 2.43
119 120 3.138798 GGTGGTAGAGCGAGCGGA 61.139 66.667 0.00 0.00 0.00 5.54
120 121 2.409651 GTGGTAGAGCGAGCGGAG 59.590 66.667 0.00 0.00 0.00 4.63
133 134 4.554363 CGGAGCGCGTAGTCCCAG 62.554 72.222 8.43 0.00 0.00 4.45
134 135 4.874977 GGAGCGCGTAGTCCCAGC 62.875 72.222 8.43 0.00 0.00 4.85
140 141 4.063967 CGTAGTCCCAGCGGCACA 62.064 66.667 1.45 0.00 0.00 4.57
141 142 2.125512 GTAGTCCCAGCGGCACAG 60.126 66.667 1.45 0.00 0.00 3.66
142 143 4.082523 TAGTCCCAGCGGCACAGC 62.083 66.667 1.45 0.00 37.41 4.40
159 160 4.101448 CCCCGCCTGGTCCTTGAG 62.101 72.222 0.00 0.00 0.00 3.02
160 161 4.785453 CCCGCCTGGTCCTTGAGC 62.785 72.222 0.00 0.00 0.00 4.26
164 165 3.710722 CCTGGTCCTTGAGCGCCT 61.711 66.667 2.29 0.00 32.15 5.52
165 166 2.125350 CTGGTCCTTGAGCGCCTC 60.125 66.667 2.29 1.22 32.15 4.70
166 167 3.672295 CTGGTCCTTGAGCGCCTCC 62.672 68.421 2.29 0.00 32.15 4.30
167 168 3.706373 GGTCCTTGAGCGCCTCCA 61.706 66.667 2.29 0.00 0.00 3.86
168 169 2.435059 GTCCTTGAGCGCCTCCAC 60.435 66.667 2.29 0.00 0.00 4.02
169 170 4.069232 TCCTTGAGCGCCTCCACG 62.069 66.667 2.29 0.00 0.00 4.94
191 192 4.758251 CCATGCTCGTCGCCACCA 62.758 66.667 0.00 0.00 38.05 4.17
192 193 3.490759 CATGCTCGTCGCCACCAC 61.491 66.667 0.00 0.00 38.05 4.16
193 194 4.760047 ATGCTCGTCGCCACCACC 62.760 66.667 0.00 0.00 38.05 4.61
195 196 4.760047 GCTCGTCGCCACCACCAT 62.760 66.667 0.00 0.00 0.00 3.55
196 197 2.509336 CTCGTCGCCACCACCATC 60.509 66.667 0.00 0.00 0.00 3.51
197 198 4.429212 TCGTCGCCACCACCATCG 62.429 66.667 0.00 0.00 0.00 3.84
198 199 4.429212 CGTCGCCACCACCATCGA 62.429 66.667 0.00 0.00 0.00 3.59
199 200 2.813908 GTCGCCACCACCATCGAC 60.814 66.667 0.00 0.00 43.23 4.20
200 201 4.429212 TCGCCACCACCATCGACG 62.429 66.667 0.00 0.00 0.00 5.12
207 208 4.096003 CACCATCGACGCCCCCTT 62.096 66.667 0.00 0.00 0.00 3.95
208 209 3.782443 ACCATCGACGCCCCCTTC 61.782 66.667 0.00 0.00 0.00 3.46
209 210 3.470888 CCATCGACGCCCCCTTCT 61.471 66.667 0.00 0.00 0.00 2.85
210 211 2.584608 CATCGACGCCCCCTTCTT 59.415 61.111 0.00 0.00 0.00 2.52
211 212 1.815421 CATCGACGCCCCCTTCTTG 60.815 63.158 0.00 0.00 0.00 3.02
212 213 3.031417 ATCGACGCCCCCTTCTTGG 62.031 63.158 0.00 0.00 0.00 3.61
222 223 4.735132 CTTCTTGGCCGCCGACGA 62.735 66.667 4.58 0.00 43.93 4.20
223 224 4.735132 TTCTTGGCCGCCGACGAG 62.735 66.667 4.58 0.36 43.93 4.18
230 231 3.893763 CCGCCGACGAGCTCATCT 61.894 66.667 15.40 0.00 43.93 2.90
231 232 2.352915 CGCCGACGAGCTCATCTC 60.353 66.667 15.40 3.80 43.93 2.75
232 233 2.829206 CGCCGACGAGCTCATCTCT 61.829 63.158 15.40 0.00 43.93 3.10
233 234 1.299014 GCCGACGAGCTCATCTCTG 60.299 63.158 15.40 0.51 39.70 3.35
234 235 1.999071 GCCGACGAGCTCATCTCTGT 61.999 60.000 15.40 1.49 39.70 3.41
235 236 0.028770 CCGACGAGCTCATCTCTGTC 59.971 60.000 15.40 10.52 39.70 3.51
236 237 0.028770 CGACGAGCTCATCTCTGTCC 59.971 60.000 15.40 0.00 39.70 4.02
237 238 1.388547 GACGAGCTCATCTCTGTCCT 58.611 55.000 15.40 0.00 39.70 3.85
238 239 1.065401 GACGAGCTCATCTCTGTCCTG 59.935 57.143 15.40 0.00 39.70 3.86
239 240 1.102154 CGAGCTCATCTCTGTCCTGT 58.898 55.000 15.40 0.00 39.70 4.00
240 241 1.202279 CGAGCTCATCTCTGTCCTGTG 60.202 57.143 15.40 0.00 39.70 3.66
241 242 0.536260 AGCTCATCTCTGTCCTGTGC 59.464 55.000 0.00 0.00 0.00 4.57
242 243 0.536260 GCTCATCTCTGTCCTGTGCT 59.464 55.000 0.00 0.00 0.00 4.40
243 244 1.066286 GCTCATCTCTGTCCTGTGCTT 60.066 52.381 0.00 0.00 0.00 3.91
244 245 2.891112 CTCATCTCTGTCCTGTGCTTC 58.109 52.381 0.00 0.00 0.00 3.86
245 246 1.552337 TCATCTCTGTCCTGTGCTTCC 59.448 52.381 0.00 0.00 0.00 3.46
246 247 0.534412 ATCTCTGTCCTGTGCTTCCG 59.466 55.000 0.00 0.00 0.00 4.30
247 248 0.539669 TCTCTGTCCTGTGCTTCCGA 60.540 55.000 0.00 0.00 0.00 4.55
248 249 0.534412 CTCTGTCCTGTGCTTCCGAT 59.466 55.000 0.00 0.00 0.00 4.18
249 250 0.247460 TCTGTCCTGTGCTTCCGATG 59.753 55.000 0.00 0.00 0.00 3.84
250 251 0.742281 CTGTCCTGTGCTTCCGATGG 60.742 60.000 0.00 0.00 0.00 3.51
251 252 1.191489 TGTCCTGTGCTTCCGATGGA 61.191 55.000 0.00 0.00 0.00 3.41
252 253 0.460987 GTCCTGTGCTTCCGATGGAG 60.461 60.000 0.00 0.00 31.21 3.86
253 254 1.153289 CCTGTGCTTCCGATGGAGG 60.153 63.158 0.00 0.00 31.21 4.30
254 255 1.599047 CTGTGCTTCCGATGGAGGT 59.401 57.895 0.00 0.00 31.01 3.85
255 256 0.460987 CTGTGCTTCCGATGGAGGTC 60.461 60.000 0.00 0.00 31.01 3.85
256 257 1.519455 GTGCTTCCGATGGAGGTCG 60.519 63.158 0.00 0.00 41.13 4.79
257 258 1.982395 TGCTTCCGATGGAGGTCGT 60.982 57.895 0.00 0.00 39.89 4.34
258 259 1.519455 GCTTCCGATGGAGGTCGTG 60.519 63.158 0.00 0.00 39.89 4.35
259 260 1.890894 CTTCCGATGGAGGTCGTGT 59.109 57.895 0.00 0.00 39.89 4.49
260 261 0.179134 CTTCCGATGGAGGTCGTGTC 60.179 60.000 0.00 0.00 39.89 3.67
261 262 0.611062 TTCCGATGGAGGTCGTGTCT 60.611 55.000 0.00 0.00 39.89 3.41
262 263 0.611062 TCCGATGGAGGTCGTGTCTT 60.611 55.000 0.00 0.00 39.89 3.01
263 264 0.179134 CCGATGGAGGTCGTGTCTTC 60.179 60.000 0.00 0.00 39.89 2.87
264 265 0.811915 CGATGGAGGTCGTGTCTTCT 59.188 55.000 0.00 0.00 36.88 2.85
282 283 1.486310 TCTTGTGTGCTCTGGTTGAGT 59.514 47.619 0.00 0.00 44.41 3.41
283 284 1.869767 CTTGTGTGCTCTGGTTGAGTC 59.130 52.381 0.00 0.00 44.41 3.36
332 337 1.413368 CGTTTATATACGCGGGCGC 59.587 57.895 12.47 0.00 44.19 6.53
403 409 0.391263 GGTTTCGGGCCAGTAGACTG 60.391 60.000 4.39 2.50 43.40 3.51
405 411 1.192146 TTTCGGGCCAGTAGACTGCT 61.192 55.000 4.39 0.00 42.47 4.24
406 412 1.888436 TTCGGGCCAGTAGACTGCTG 61.888 60.000 13.19 13.19 42.47 4.41
477 487 0.106318 TAGGTCGGTAGCTTCCCTCC 60.106 60.000 3.47 6.59 34.60 4.30
483 493 1.065418 CGGTAGCTTCCCTCCATGTTT 60.065 52.381 3.47 0.00 0.00 2.83
511 521 2.359230 AAAGTGAGGGCGAGCTGC 60.359 61.111 0.00 0.00 45.38 5.25
526 536 1.135139 AGCTGCGATGTCGATGTACTT 59.865 47.619 6.60 0.00 43.02 2.24
527 537 2.357952 AGCTGCGATGTCGATGTACTTA 59.642 45.455 6.60 0.00 43.02 2.24
529 539 3.792459 GCTGCGATGTCGATGTACTTACT 60.792 47.826 6.60 0.00 43.02 2.24
530 540 3.691498 TGCGATGTCGATGTACTTACTG 58.309 45.455 6.60 0.00 43.02 2.74
532 542 3.488721 GCGATGTCGATGTACTTACTGGT 60.489 47.826 6.60 0.00 43.02 4.00
533 543 4.260907 GCGATGTCGATGTACTTACTGGTA 60.261 45.833 6.60 0.00 43.02 3.25
534 544 5.203370 CGATGTCGATGTACTTACTGGTAC 58.797 45.833 0.00 0.00 43.02 3.34
535 545 4.604843 TGTCGATGTACTTACTGGTACG 57.395 45.455 0.00 0.00 43.36 3.67
536 546 4.252878 TGTCGATGTACTTACTGGTACGA 58.747 43.478 0.00 0.00 43.36 3.43
537 547 4.093408 TGTCGATGTACTTACTGGTACGAC 59.907 45.833 0.00 0.00 43.36 4.34
538 548 3.306973 TCGATGTACTTACTGGTACGACG 59.693 47.826 0.00 0.00 43.36 5.12
539 549 3.306973 CGATGTACTTACTGGTACGACGA 59.693 47.826 0.00 0.00 43.36 4.20
540 550 4.582459 GATGTACTTACTGGTACGACGAC 58.418 47.826 0.00 0.00 43.36 4.34
541 551 2.742053 TGTACTTACTGGTACGACGACC 59.258 50.000 0.00 5.67 43.36 4.79
554 565 4.657824 CGACCCCGCTTGTGACGT 62.658 66.667 0.00 0.00 0.00 4.34
566 577 2.724977 TGTGACGTCCACTGAGAATC 57.275 50.000 14.12 0.00 45.86 2.52
571 582 1.471684 ACGTCCACTGAGAATCCGTAC 59.528 52.381 0.00 0.00 28.94 3.67
572 583 1.743958 CGTCCACTGAGAATCCGTACT 59.256 52.381 0.00 0.00 28.94 2.73
685 718 1.072154 GTTTTCGCTCGTGCAAAAAGC 60.072 47.619 8.44 6.91 35.99 3.51
709 742 2.746362 GCAGAGAACCTTTCAGTGATGG 59.254 50.000 10.18 10.18 0.00 3.51
719 752 4.467769 CTTTCAGTGATGGGAATATGCCT 58.532 43.478 0.00 0.00 0.00 4.75
722 755 1.202976 AGTGATGGGAATATGCCTGCC 60.203 52.381 0.00 0.00 0.00 4.85
723 756 0.250858 TGATGGGAATATGCCTGCCG 60.251 55.000 0.00 0.00 0.00 5.69
724 757 0.962356 GATGGGAATATGCCTGCCGG 60.962 60.000 0.00 0.00 0.00 6.13
735 768 1.153628 CCTGCCGGCAGTAGTACAC 60.154 63.158 44.92 8.57 42.15 2.90
741 774 1.217244 GGCAGTAGTACACCACCGG 59.783 63.158 0.00 0.00 0.00 5.28
787 825 0.168128 AAAGAAATGCGGCGCAGTAC 59.832 50.000 38.27 28.45 43.65 2.73
795 833 2.809601 GGCGCAGTACACAGGTCG 60.810 66.667 10.83 0.00 0.00 4.79
799 837 1.686566 CGCAGTACACAGGTCGCATG 61.687 60.000 0.00 0.00 0.00 4.06
800 838 1.970917 GCAGTACACAGGTCGCATGC 61.971 60.000 7.91 7.91 0.00 4.06
801 839 1.079127 AGTACACAGGTCGCATGCC 60.079 57.895 13.15 0.00 0.00 4.40
802 840 1.375396 GTACACAGGTCGCATGCCA 60.375 57.895 13.15 0.00 0.00 4.92
803 841 1.079197 TACACAGGTCGCATGCCAG 60.079 57.895 13.15 0.00 0.00 4.85
804 842 2.520465 TACACAGGTCGCATGCCAGG 62.520 60.000 13.15 0.00 0.00 4.45
805 843 3.640407 ACAGGTCGCATGCCAGGT 61.640 61.111 13.15 0.50 0.00 4.00
806 844 3.129502 CAGGTCGCATGCCAGGTG 61.130 66.667 13.15 1.00 0.00 4.00
834 872 3.041940 CGTCGCACCCACTGGTTC 61.042 66.667 0.00 0.00 44.75 3.62
839 877 3.246112 CACCCACTGGTTCCCCGA 61.246 66.667 0.00 0.00 44.75 5.14
848 887 4.144703 GTTCCCCGACTCCCGCTC 62.145 72.222 0.00 0.00 36.84 5.03
871 910 0.796312 CATCGTTCCTTGGTTCACGG 59.204 55.000 8.20 0.00 33.39 4.94
872 911 0.953960 ATCGTTCCTTGGTTCACGGC 60.954 55.000 8.20 0.00 33.39 5.68
873 912 2.613506 CGTTCCTTGGTTCACGGCC 61.614 63.158 0.00 0.00 0.00 6.13
874 913 1.527380 GTTCCTTGGTTCACGGCCA 60.527 57.895 2.24 0.00 0.00 5.36
877 916 4.025401 CTTGGTTCACGGCCACGC 62.025 66.667 2.24 0.00 46.04 5.34
966 1064 1.147376 CACCTGAACGTGGAACCCA 59.853 57.895 0.00 0.00 0.00 4.51
985 1083 3.438360 CCAATAAAATCGCCTTGTCAGC 58.562 45.455 0.00 0.00 0.00 4.26
1028 1127 1.450312 GCCCAGATGAACGGGTCAG 60.450 63.158 0.82 0.00 45.07 3.51
1054 1153 6.209589 TGCTCCGTGCTCTTCTATAAATAGAT 59.790 38.462 0.65 0.00 43.37 1.98
1070 1169 0.817654 AGATCACGTCGATGGCTTCA 59.182 50.000 9.90 0.00 33.17 3.02
1078 1177 2.736721 CGTCGATGGCTTCAAGAGAAAA 59.263 45.455 0.00 0.00 32.35 2.29
1090 1189 6.610741 TTCAAGAGAAAAAGAGCTCAAGTC 57.389 37.500 17.77 7.51 33.62 3.01
1110 1212 1.351017 CCCCCTGCACTTCTACTTCAA 59.649 52.381 0.00 0.00 0.00 2.69
1117 1219 2.739379 GCACTTCTACTTCAAGCTGGTC 59.261 50.000 0.00 0.00 0.00 4.02
1127 1229 3.258228 AAGCTGGTCGGCTGCATCA 62.258 57.895 4.93 0.00 42.24 3.07
1294 1407 0.617413 CCTGAGGCTGGTGTTGATCT 59.383 55.000 0.00 0.00 0.00 2.75
1297 1410 3.118112 CCTGAGGCTGGTGTTGATCTTAT 60.118 47.826 0.00 0.00 0.00 1.73
1303 1416 2.684881 CTGGTGTTGATCTTATGGTGGC 59.315 50.000 0.00 0.00 0.00 5.01
1304 1417 2.040947 TGGTGTTGATCTTATGGTGGCA 59.959 45.455 0.00 0.00 0.00 4.92
1306 1419 3.119495 GGTGTTGATCTTATGGTGGCAAC 60.119 47.826 0.00 0.00 36.92 4.17
1318 1431 2.927580 TGGCAACGAGGACGAGTCC 61.928 63.158 14.10 14.10 45.99 3.85
1387 1500 3.496875 CTGAGGCCGAGATCGCCAG 62.497 68.421 12.01 0.00 37.78 4.85
1415 1528 0.906756 AGCTCCTGCACTTGCTCCTA 60.907 55.000 2.33 0.00 42.74 2.94
1428 1541 1.766461 CTCCTATGGGGGCCGAACT 60.766 63.158 0.00 0.00 35.33 3.01
1429 1542 0.471211 CTCCTATGGGGGCCGAACTA 60.471 60.000 0.00 0.00 35.33 2.24
1430 1543 0.030909 TCCTATGGGGGCCGAACTAA 60.031 55.000 0.00 0.00 35.33 2.24
1431 1544 0.108019 CCTATGGGGGCCGAACTAAC 59.892 60.000 0.00 0.00 0.00 2.34
1435 1548 1.078637 GGGGGCCGAACTAACTGAC 60.079 63.158 0.00 0.00 0.00 3.51
1460 1580 3.612681 CCACCCGGTCTGTCACGT 61.613 66.667 0.00 0.00 0.00 4.49
1461 1581 2.049433 CACCCGGTCTGTCACGTC 60.049 66.667 0.00 0.00 0.00 4.34
1502 1628 1.982395 CCCGTCTCAGTAGGGTGCA 60.982 63.158 0.00 0.00 40.27 4.57
1527 1653 8.786955 CAATGTTTGCTAAAATTTTTGTGTGTG 58.213 29.630 9.06 0.00 0.00 3.82
1529 1655 8.261492 TGTTTGCTAAAATTTTTGTGTGTGAT 57.739 26.923 9.06 0.00 0.00 3.06
1530 1656 8.386606 TGTTTGCTAAAATTTTTGTGTGTGATC 58.613 29.630 9.06 0.00 0.00 2.92
1532 1658 7.697352 TGCTAAAATTTTTGTGTGTGATCAG 57.303 32.000 9.06 0.00 0.00 2.90
1533 1659 7.264221 TGCTAAAATTTTTGTGTGTGATCAGT 58.736 30.769 9.06 0.00 0.00 3.41
1534 1660 8.409371 TGCTAAAATTTTTGTGTGTGATCAGTA 58.591 29.630 9.06 0.00 0.00 2.74
1535 1661 8.905702 GCTAAAATTTTTGTGTGTGATCAGTAG 58.094 33.333 9.06 0.00 0.00 2.57
1539 1665 1.275666 TGTGTGTGATCAGTAGGGGG 58.724 55.000 0.00 0.00 0.00 5.40
1563 1689 5.469373 CAATGTTTGCTAGCTGTTCGATA 57.531 39.130 17.23 0.00 0.00 2.92
1564 1690 5.258622 CAATGTTTGCTAGCTGTTCGATAC 58.741 41.667 17.23 0.33 0.00 2.24
1576 1702 7.043961 AGCTGTTCGATACATGATCTTCTTA 57.956 36.000 0.00 0.00 35.85 2.10
1577 1703 7.665690 AGCTGTTCGATACATGATCTTCTTAT 58.334 34.615 0.00 0.00 35.85 1.73
1578 1704 8.147058 AGCTGTTCGATACATGATCTTCTTATT 58.853 33.333 0.00 0.00 35.85 1.40
1579 1705 8.768955 GCTGTTCGATACATGATCTTCTTATTT 58.231 33.333 0.00 0.00 35.85 1.40
1593 1719 6.493116 TCTTCTTATTTAGGACTTACGAGCG 58.507 40.000 0.00 0.00 0.00 5.03
1594 1720 5.179045 TCTTATTTAGGACTTACGAGCGG 57.821 43.478 0.00 0.00 0.00 5.52
1597 1723 1.386533 TTAGGACTTACGAGCGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
1620 1746 1.066143 CAGCCTACGGACTGGATTTGT 60.066 52.381 0.00 0.00 0.00 2.83
1626 1752 4.570772 CCTACGGACTGGATTTGTGTATTG 59.429 45.833 0.00 0.00 0.00 1.90
1627 1753 4.015872 ACGGACTGGATTTGTGTATTGT 57.984 40.909 0.00 0.00 0.00 2.71
1628 1754 5.155278 ACGGACTGGATTTGTGTATTGTA 57.845 39.130 0.00 0.00 0.00 2.41
1630 1756 5.998981 ACGGACTGGATTTGTGTATTGTAAA 59.001 36.000 0.00 0.00 0.00 2.01
1632 1758 6.148811 CGGACTGGATTTGTGTATTGTAAAGT 59.851 38.462 0.00 0.00 0.00 2.66
1633 1759 7.527457 GGACTGGATTTGTGTATTGTAAAGTC 58.473 38.462 0.00 0.00 0.00 3.01
1634 1760 7.361799 GGACTGGATTTGTGTATTGTAAAGTCC 60.362 40.741 0.00 0.00 33.09 3.85
1635 1761 7.001674 ACTGGATTTGTGTATTGTAAAGTCCA 58.998 34.615 0.00 0.00 0.00 4.02
1636 1762 7.669722 ACTGGATTTGTGTATTGTAAAGTCCAT 59.330 33.333 0.00 0.00 32.21 3.41
1637 1763 9.173021 CTGGATTTGTGTATTGTAAAGTCCATA 57.827 33.333 0.00 0.00 32.21 2.74
1638 1764 9.693739 TGGATTTGTGTATTGTAAAGTCCATAT 57.306 29.630 0.00 0.00 0.00 1.78
1639 1765 9.950680 GGATTTGTGTATTGTAAAGTCCATATG 57.049 33.333 0.00 0.00 0.00 1.78
1640 1766 9.950680 GATTTGTGTATTGTAAAGTCCATATGG 57.049 33.333 16.25 16.25 0.00 2.74
1641 1767 6.935741 TGTGTATTGTAAAGTCCATATGGC 57.064 37.500 17.58 12.03 34.44 4.40
1642 1768 5.825679 TGTGTATTGTAAAGTCCATATGGCC 59.174 40.000 17.58 5.62 34.44 5.36
1661 1787 4.964897 TGGCCATATGGGTATCTGATCTAG 59.035 45.833 23.30 0.00 39.65 2.43
1662 1788 4.346418 GGCCATATGGGTATCTGATCTAGG 59.654 50.000 23.30 0.00 39.65 3.02
1663 1789 5.211973 GCCATATGGGTATCTGATCTAGGA 58.788 45.833 23.30 0.00 39.65 2.94
1665 1791 6.439487 CCATATGGGTATCTGATCTAGGAGT 58.561 44.000 14.52 0.00 0.00 3.85
1666 1792 7.587258 CCATATGGGTATCTGATCTAGGAGTA 58.413 42.308 14.52 0.00 0.00 2.59
1667 1793 7.504238 CCATATGGGTATCTGATCTAGGAGTAC 59.496 44.444 14.52 0.00 0.00 2.73
1668 1794 6.728366 ATGGGTATCTGATCTAGGAGTACT 57.272 41.667 0.00 0.00 0.00 2.73
1669 1795 6.532119 TGGGTATCTGATCTAGGAGTACTT 57.468 41.667 0.00 0.00 0.00 2.24
1670 1796 6.307776 TGGGTATCTGATCTAGGAGTACTTG 58.692 44.000 0.00 0.00 0.00 3.16
1694 1820 4.631813 GCACAATCGGAAATCTCTTGTACT 59.368 41.667 0.00 0.00 0.00 2.73
1697 1823 6.811665 CACAATCGGAAATCTCTTGTACTACA 59.188 38.462 0.00 0.00 0.00 2.74
1700 1826 8.969267 CAATCGGAAATCTCTTGTACTACATAC 58.031 37.037 0.00 0.00 0.00 2.39
1701 1827 7.876936 TCGGAAATCTCTTGTACTACATACT 57.123 36.000 0.00 0.00 34.56 2.12
1705 1831 9.747293 GGAAATCTCTTGTACTACATACTTACC 57.253 37.037 0.00 0.00 34.56 2.85
1757 1958 9.807649 GCAAAGTTTTATCATCTTCCAACATAT 57.192 29.630 0.00 0.00 0.00 1.78
1771 1972 6.389830 TCCAACATATATGTCCAAACATGC 57.610 37.500 18.52 0.00 45.72 4.06
1806 2007 9.836864 AACTATATAAGTGAGCAACATCAATGA 57.163 29.630 0.00 0.00 38.88 2.57
1814 2015 8.969260 AGTGAGCAACATCAATGAATAATAGA 57.031 30.769 0.00 0.00 0.00 1.98
1815 2016 8.834465 AGTGAGCAACATCAATGAATAATAGAC 58.166 33.333 0.00 0.00 0.00 2.59
1816 2017 8.615211 GTGAGCAACATCAATGAATAATAGACA 58.385 33.333 0.00 0.00 0.00 3.41
1817 2018 9.176460 TGAGCAACATCAATGAATAATAGACAA 57.824 29.630 0.00 0.00 0.00 3.18
1827 2028 9.567917 CAATGAATAATAGACAATACGTGAACG 57.432 33.333 0.00 0.40 46.33 3.95
1828 2029 7.157050 TGAATAATAGACAATACGTGAACGC 57.843 36.000 0.00 0.00 44.43 4.84
1829 2030 6.976349 TGAATAATAGACAATACGTGAACGCT 59.024 34.615 0.00 0.00 44.43 5.07
1836 2037 3.242518 CAATACGTGAACGCTGAGAGAA 58.757 45.455 0.00 0.00 44.43 2.87
1840 2041 1.453524 CGTGAACGCTGAGAGAAACAG 59.546 52.381 0.00 0.00 38.27 3.16
1848 2049 3.856521 CGCTGAGAGAAACAGAGTACATG 59.143 47.826 0.00 0.00 37.54 3.21
1852 2053 4.238514 GAGAGAAACAGAGTACATGCGTT 58.761 43.478 0.00 0.00 0.00 4.84
1856 2057 3.334583 AACAGAGTACATGCGTTCCAT 57.665 42.857 0.00 0.00 33.39 3.41
1861 2062 2.609459 GAGTACATGCGTTCCATCCAAG 59.391 50.000 0.00 0.00 29.71 3.61
1868 2069 1.904287 CGTTCCATCCAAGTCCCAAA 58.096 50.000 0.00 0.00 0.00 3.28
1871 2072 0.407918 TCCATCCAAGTCCCAAACCC 59.592 55.000 0.00 0.00 0.00 4.11
1878 2079 0.923358 AAGTCCCAAACCCTGTGTCA 59.077 50.000 0.00 0.00 0.00 3.58
1883 2084 0.823356 CCAAACCCTGTGTCACCCTG 60.823 60.000 0.00 0.00 0.00 4.45
1886 2087 1.645402 AACCCTGTGTCACCCTGCTT 61.645 55.000 0.00 0.00 0.00 3.91
1906 2107 2.671963 GTGCCACGGAGGAAACCC 60.672 66.667 0.00 0.00 41.22 4.11
1912 2113 0.535797 CACGGAGGAAACCCTAGTCC 59.464 60.000 0.00 0.00 33.25 3.85
1917 2118 2.510918 GAAACCCTAGTCCGCCGC 60.511 66.667 0.00 0.00 0.00 6.53
1933 2134 3.773154 GCCTCCTCCCTCCTCCCT 61.773 72.222 0.00 0.00 0.00 4.20
1934 2135 2.612251 CCTCCTCCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
1935 2136 2.612251 CTCCTCCCTCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1936 2137 3.036959 TCCTCCCTCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1957 2158 1.209504 CCCTTTCCATCAACTAGCCGA 59.790 52.381 0.00 0.00 0.00 5.54
1959 2160 1.927174 CTTTCCATCAACTAGCCGACG 59.073 52.381 0.00 0.00 0.00 5.12
1981 2182 3.991536 GAGGAGCCGTCGGTGAAGC 62.992 68.421 13.94 0.00 0.00 3.86
1985 2186 4.778143 GCCGTCGGTGAAGCCCAT 62.778 66.667 13.94 0.00 0.00 4.00
1986 2187 2.819595 CCGTCGGTGAAGCCCATG 60.820 66.667 2.08 0.00 0.00 3.66
1989 2190 3.645660 TCGGTGAAGCCCATGCCA 61.646 61.111 0.00 0.00 38.69 4.92
1990 2191 2.676121 CGGTGAAGCCCATGCCAA 60.676 61.111 0.00 0.00 38.69 4.52
1993 2194 1.598701 GGTGAAGCCCATGCCAACTC 61.599 60.000 0.00 0.00 38.69 3.01
1994 2195 0.895100 GTGAAGCCCATGCCAACTCA 60.895 55.000 0.00 0.00 38.69 3.41
1995 2196 0.178967 TGAAGCCCATGCCAACTCAA 60.179 50.000 0.00 0.00 38.69 3.02
2006 2207 0.895559 CCAACTCAAGGGAAGGTGGC 60.896 60.000 0.00 0.00 0.00 5.01
2007 2208 0.178992 CAACTCAAGGGAAGGTGGCA 60.179 55.000 0.00 0.00 0.00 4.92
2013 2214 4.785453 GGGAAGGTGGCAGCGAGG 62.785 72.222 11.51 0.00 0.00 4.63
2021 2222 2.980233 GGCAGCGAGGCACTTTGT 60.980 61.111 1.18 0.00 41.55 2.83
2022 2223 2.555547 GGCAGCGAGGCACTTTGTT 61.556 57.895 1.18 0.00 41.55 2.83
2023 2224 1.081840 GCAGCGAGGCACTTTGTTC 60.082 57.895 0.00 0.00 41.55 3.18
2024 2225 1.576421 CAGCGAGGCACTTTGTTCC 59.424 57.895 0.00 0.00 41.55 3.62
2025 2226 0.886490 CAGCGAGGCACTTTGTTCCT 60.886 55.000 0.00 0.00 41.55 3.36
2026 2227 0.603975 AGCGAGGCACTTTGTTCCTC 60.604 55.000 6.37 6.37 41.36 3.71
2027 2228 0.884704 GCGAGGCACTTTGTTCCTCA 60.885 55.000 14.61 0.00 44.14 3.86
2028 2229 1.813513 CGAGGCACTTTGTTCCTCAT 58.186 50.000 14.61 0.00 44.14 2.90
2029 2230 1.466167 CGAGGCACTTTGTTCCTCATG 59.534 52.381 14.61 0.00 44.14 3.07
2030 2231 2.783135 GAGGCACTTTGTTCCTCATGA 58.217 47.619 10.62 0.00 43.57 3.07
2031 2232 2.746362 GAGGCACTTTGTTCCTCATGAG 59.254 50.000 16.24 16.24 43.57 2.90
2032 2233 2.553904 AGGCACTTTGTTCCTCATGAGG 60.554 50.000 32.60 32.60 44.04 3.86
2044 2245 3.969287 CTCATGAGGAGTTCTGGTTGA 57.031 47.619 15.38 0.00 38.90 3.18
2045 2246 3.594134 CTCATGAGGAGTTCTGGTTGAC 58.406 50.000 15.38 0.00 38.90 3.18
2046 2247 2.972021 TCATGAGGAGTTCTGGTTGACA 59.028 45.455 0.00 0.00 0.00 3.58
2047 2248 4.858732 CTCATGAGGAGTTCTGGTTGACAG 60.859 50.000 15.38 0.00 42.55 3.51
2048 2249 7.812133 CTCATGAGGAGTTCTGGTTGACAGG 62.812 52.000 15.38 0.00 42.00 4.00
2060 2261 3.834799 GACAGGTCGGGGGTAGCG 61.835 72.222 0.00 0.00 0.00 4.26
2076 2277 4.635925 CGGAGCTACTACATGGCG 57.364 61.111 0.00 0.00 40.44 5.69
2107 2312 2.813474 CATCGTTCCCTCGCGCAA 60.813 61.111 8.75 0.00 0.00 4.85
2135 2340 2.026822 GGCACAGCTGGCATATATAGGT 60.027 50.000 19.93 0.00 42.66 3.08
2141 2346 2.621338 CTGGCATATATAGGTGGCACG 58.379 52.381 12.17 0.00 44.60 5.34
2142 2347 1.277842 TGGCATATATAGGTGGCACGG 59.722 52.381 12.17 0.00 44.60 4.94
2155 2360 4.263572 CACGGTGGTGGCTTCCCA 62.264 66.667 0.00 0.00 40.58 4.37
2175 2385 2.125673 GGTCGGTGGTGATCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
2198 2408 1.607801 CTGGCACGATGGACTCCAGA 61.608 60.000 3.62 0.00 45.31 3.86
2202 2412 1.957177 GCACGATGGACTCCAGATCTA 59.043 52.381 3.62 0.00 36.75 1.98
2205 2415 3.381590 CACGATGGACTCCAGATCTAACA 59.618 47.826 3.62 0.00 36.75 2.41
2212 2422 4.262249 GGACTCCAGATCTAACATGGTAGC 60.262 50.000 13.26 0.00 35.51 3.58
2213 2423 4.290093 ACTCCAGATCTAACATGGTAGCA 58.710 43.478 13.26 0.00 35.51 3.49
2214 2424 4.716784 ACTCCAGATCTAACATGGTAGCAA 59.283 41.667 13.26 0.00 35.51 3.91
2267 2477 1.528586 CCTAGCGACTAACATGCATGC 59.471 52.381 26.53 11.82 0.00 4.06
2269 2479 2.602257 AGCGACTAACATGCATGCTA 57.398 45.000 26.53 17.58 0.00 3.49
2270 2480 2.477825 AGCGACTAACATGCATGCTAG 58.522 47.619 27.73 27.73 33.75 3.42
2292 2502 3.284449 GCACGTCCACAACCACCC 61.284 66.667 0.00 0.00 0.00 4.61
2300 2510 0.395312 CCACAACCACCCGTAACTCT 59.605 55.000 0.00 0.00 0.00 3.24
2304 2514 1.616865 CAACCACCCGTAACTCTCTCA 59.383 52.381 0.00 0.00 0.00 3.27
2307 2517 1.065701 CCACCCGTAACTCTCTCATCG 59.934 57.143 0.00 0.00 0.00 3.84
2308 2518 1.065701 CACCCGTAACTCTCTCATCGG 59.934 57.143 0.00 0.00 38.05 4.18
2310 2520 0.738975 CCGTAACTCTCTCATCGGCA 59.261 55.000 0.00 0.00 0.00 5.69
2311 2521 1.338337 CCGTAACTCTCTCATCGGCAT 59.662 52.381 0.00 0.00 0.00 4.40
2312 2522 2.223829 CCGTAACTCTCTCATCGGCATT 60.224 50.000 0.00 0.00 0.00 3.56
2313 2523 2.791560 CGTAACTCTCTCATCGGCATTG 59.208 50.000 0.00 0.00 0.00 2.82
2314 2524 3.735208 CGTAACTCTCTCATCGGCATTGT 60.735 47.826 0.00 0.00 0.00 2.71
2315 2525 2.306341 ACTCTCTCATCGGCATTGTG 57.694 50.000 0.00 0.00 0.00 3.33
2316 2526 1.827344 ACTCTCTCATCGGCATTGTGA 59.173 47.619 0.00 0.00 0.00 3.58
2333 2546 4.067512 AGGCGGCTCTCCTCCTCA 62.068 66.667 5.25 0.00 44.09 3.86
2337 2550 1.965754 GCGGCTCTCCTCCTCACAAT 61.966 60.000 0.00 0.00 0.00 2.71
2339 2552 0.179936 GGCTCTCCTCCTCACAATGG 59.820 60.000 0.00 0.00 0.00 3.16
2343 2556 3.107601 CTCTCCTCCTCACAATGGGTTA 58.892 50.000 0.00 0.00 0.00 2.85
2348 2561 2.749621 CTCCTCACAATGGGTTACAAGC 59.250 50.000 0.00 0.00 0.00 4.01
2372 2585 1.587043 GGCTTGTTTCCTTCCCTCGC 61.587 60.000 0.00 0.00 0.00 5.03
2400 2613 1.289380 GCTCCGGCGGTATTCTAGG 59.711 63.158 27.32 7.98 0.00 3.02
2402 2615 2.156051 CTCCGGCGGTATTCTAGGGC 62.156 65.000 27.32 0.00 0.00 5.19
2405 2618 1.183549 CGGCGGTATTCTAGGGCTAT 58.816 55.000 0.00 0.00 0.00 2.97
2406 2619 1.135083 CGGCGGTATTCTAGGGCTATG 60.135 57.143 0.00 0.00 0.00 2.23
2407 2620 1.207329 GGCGGTATTCTAGGGCTATGG 59.793 57.143 0.00 0.00 0.00 2.74
2410 2623 2.496470 CGGTATTCTAGGGCTATGGACC 59.504 54.545 0.00 0.00 42.21 4.46
2415 2628 1.133136 TCTAGGGCTATGGACCAGGTC 60.133 57.143 11.70 11.70 45.05 3.85
2418 2631 1.700042 GGGCTATGGACCAGGTCAGG 61.700 65.000 21.75 8.65 41.30 3.86
2421 2634 1.418334 CTATGGACCAGGTCAGGGAG 58.582 60.000 21.75 8.56 33.68 4.30
2428 2641 1.203492 ACCAGGTCAGGGAGAAATCCT 60.203 52.381 0.00 0.00 34.39 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.465403 CTCCTCCCAGGCCACGAG 61.465 72.222 5.01 6.11 34.61 4.18
32 33 3.086600 CTCCTCCTCCCAGGCCAC 61.087 72.222 5.01 0.00 34.61 5.01
33 34 4.421554 CCTCCTCCTCCCAGGCCA 62.422 72.222 5.01 0.00 34.61 5.36
34 35 4.095400 TCCTCCTCCTCCCAGGCC 62.095 72.222 0.00 0.00 34.61 5.19
35 36 2.445654 CTCCTCCTCCTCCCAGGC 60.446 72.222 0.00 0.00 34.61 4.85
36 37 2.285180 CCTCCTCCTCCTCCCAGG 59.715 72.222 0.00 0.00 36.46 4.45
37 38 1.382420 CACCTCCTCCTCCTCCCAG 60.382 68.421 0.00 0.00 0.00 4.45
38 39 2.780693 CACCTCCTCCTCCTCCCA 59.219 66.667 0.00 0.00 0.00 4.37
39 40 2.041405 CCACCTCCTCCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
40 41 1.075600 CTCCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
41 42 1.075600 CCTCCACCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
42 43 1.864559 ACCTCCACCTCCTCCTCCT 60.865 63.158 0.00 0.00 0.00 3.69
43 44 1.687493 CACCTCCACCTCCTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
44 45 0.686112 CTCACCTCCACCTCCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
45 46 1.390125 CTCACCTCCACCTCCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
46 47 1.687493 CCTCACCTCCACCTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
47 48 1.687493 CCCTCACCTCCACCTCCTC 60.687 68.421 0.00 0.00 0.00 3.71
48 49 2.177518 TCCCTCACCTCCACCTCCT 61.178 63.158 0.00 0.00 0.00 3.69
49 50 1.990614 GTCCCTCACCTCCACCTCC 60.991 68.421 0.00 0.00 0.00 4.30
50 51 2.352032 CGTCCCTCACCTCCACCTC 61.352 68.421 0.00 0.00 0.00 3.85
51 52 2.283966 CGTCCCTCACCTCCACCT 60.284 66.667 0.00 0.00 0.00 4.00
52 53 4.083862 GCGTCCCTCACCTCCACC 62.084 72.222 0.00 0.00 0.00 4.61
53 54 4.083862 GGCGTCCCTCACCTCCAC 62.084 72.222 0.00 0.00 0.00 4.02
94 95 4.849329 CTCTACCACCGCGCCGTC 62.849 72.222 0.00 0.00 0.00 4.79
101 102 4.554363 CCGCTCGCTCTACCACCG 62.554 72.222 0.00 0.00 0.00 4.94
102 103 3.127352 CTCCGCTCGCTCTACCACC 62.127 68.421 0.00 0.00 0.00 4.61
103 104 2.409651 CTCCGCTCGCTCTACCAC 59.590 66.667 0.00 0.00 0.00 4.16
104 105 3.518998 GCTCCGCTCGCTCTACCA 61.519 66.667 0.00 0.00 0.00 3.25
105 106 4.615834 CGCTCCGCTCGCTCTACC 62.616 72.222 0.00 0.00 0.00 3.18
116 117 4.554363 CTGGGACTACGCGCTCCG 62.554 72.222 5.73 0.00 44.21 4.63
117 118 4.874977 GCTGGGACTACGCGCTCC 62.875 72.222 5.73 7.88 0.00 4.70
123 124 3.989698 CTGTGCCGCTGGGACTACG 62.990 68.421 17.10 5.52 44.53 3.51
124 125 2.125512 CTGTGCCGCTGGGACTAC 60.126 66.667 17.10 0.00 44.53 2.73
125 126 4.082523 GCTGTGCCGCTGGGACTA 62.083 66.667 17.10 6.17 44.53 2.59
142 143 4.101448 CTCAAGGACCAGGCGGGG 62.101 72.222 8.94 2.25 42.91 5.73
143 144 4.785453 GCTCAAGGACCAGGCGGG 62.785 72.222 0.79 0.79 44.81 6.13
147 148 3.672295 GAGGCGCTCAAGGACCAGG 62.672 68.421 7.64 0.00 0.00 4.45
148 149 2.125350 GAGGCGCTCAAGGACCAG 60.125 66.667 7.64 0.00 0.00 4.00
149 150 3.706373 GGAGGCGCTCAAGGACCA 61.706 66.667 7.64 0.00 31.08 4.02
150 151 3.706373 TGGAGGCGCTCAAGGACC 61.706 66.667 7.64 1.36 31.08 4.46
151 152 2.435059 GTGGAGGCGCTCAAGGAC 60.435 66.667 7.64 0.00 31.08 3.85
152 153 4.069232 CGTGGAGGCGCTCAAGGA 62.069 66.667 7.64 0.00 31.08 3.36
179 180 2.509336 GATGGTGGTGGCGACGAG 60.509 66.667 0.00 0.00 0.00 4.18
180 181 4.429212 CGATGGTGGTGGCGACGA 62.429 66.667 0.00 0.00 0.00 4.20
181 182 4.429212 TCGATGGTGGTGGCGACG 62.429 66.667 0.00 0.00 0.00 5.12
182 183 2.813908 GTCGATGGTGGTGGCGAC 60.814 66.667 0.00 0.00 44.83 5.19
183 184 4.429212 CGTCGATGGTGGTGGCGA 62.429 66.667 0.00 0.00 0.00 5.54
190 191 4.096003 AAGGGGGCGTCGATGGTG 62.096 66.667 6.79 0.00 0.00 4.17
191 192 3.782443 GAAGGGGGCGTCGATGGT 61.782 66.667 6.79 0.00 0.00 3.55
192 193 3.031417 AAGAAGGGGGCGTCGATGG 62.031 63.158 6.79 0.00 0.00 3.51
193 194 1.815421 CAAGAAGGGGGCGTCGATG 60.815 63.158 0.00 0.00 0.00 3.84
194 195 2.584608 CAAGAAGGGGGCGTCGAT 59.415 61.111 0.00 0.00 0.00 3.59
195 196 3.702048 CCAAGAAGGGGGCGTCGA 61.702 66.667 0.00 0.00 0.00 4.20
205 206 4.735132 TCGTCGGCGGCCAAGAAG 62.735 66.667 20.71 11.33 38.89 2.85
206 207 4.735132 CTCGTCGGCGGCCAAGAA 62.735 66.667 20.71 0.18 38.89 2.52
213 214 3.815569 GAGATGAGCTCGTCGGCGG 62.816 68.421 26.30 0.65 36.99 6.13
214 215 2.352915 GAGATGAGCTCGTCGGCG 60.353 66.667 26.30 1.15 36.99 6.46
221 222 1.471327 GCACAGGACAGAGATGAGCTC 60.471 57.143 6.82 6.82 44.29 4.09
222 223 0.536260 GCACAGGACAGAGATGAGCT 59.464 55.000 0.00 0.00 0.00 4.09
223 224 0.536260 AGCACAGGACAGAGATGAGC 59.464 55.000 0.00 0.00 0.00 4.26
224 225 2.418471 GGAAGCACAGGACAGAGATGAG 60.418 54.545 0.00 0.00 0.00 2.90
225 226 1.552337 GGAAGCACAGGACAGAGATGA 59.448 52.381 0.00 0.00 0.00 2.92
226 227 1.738365 CGGAAGCACAGGACAGAGATG 60.738 57.143 0.00 0.00 0.00 2.90
227 228 0.534412 CGGAAGCACAGGACAGAGAT 59.466 55.000 0.00 0.00 0.00 2.75
228 229 0.539669 TCGGAAGCACAGGACAGAGA 60.540 55.000 0.00 0.00 0.00 3.10
229 230 0.534412 ATCGGAAGCACAGGACAGAG 59.466 55.000 0.00 0.00 0.00 3.35
230 231 0.247460 CATCGGAAGCACAGGACAGA 59.753 55.000 0.00 0.00 0.00 3.41
231 232 0.742281 CCATCGGAAGCACAGGACAG 60.742 60.000 0.00 0.00 0.00 3.51
232 233 1.191489 TCCATCGGAAGCACAGGACA 61.191 55.000 0.00 0.00 0.00 4.02
233 234 0.460987 CTCCATCGGAAGCACAGGAC 60.461 60.000 0.00 0.00 0.00 3.85
234 235 1.617018 CCTCCATCGGAAGCACAGGA 61.617 60.000 0.00 0.00 0.00 3.86
235 236 1.153289 CCTCCATCGGAAGCACAGG 60.153 63.158 0.00 0.00 0.00 4.00
236 237 0.460987 GACCTCCATCGGAAGCACAG 60.461 60.000 0.00 0.00 0.00 3.66
237 238 1.596934 GACCTCCATCGGAAGCACA 59.403 57.895 0.00 0.00 0.00 4.57
238 239 1.519455 CGACCTCCATCGGAAGCAC 60.519 63.158 0.00 0.00 38.47 4.40
239 240 1.982395 ACGACCTCCATCGGAAGCA 60.982 57.895 0.00 0.00 46.56 3.91
240 241 1.519455 CACGACCTCCATCGGAAGC 60.519 63.158 0.00 0.00 46.56 3.86
241 242 0.179134 GACACGACCTCCATCGGAAG 60.179 60.000 0.00 0.00 46.56 3.46
242 243 0.611062 AGACACGACCTCCATCGGAA 60.611 55.000 0.00 0.00 46.56 4.30
243 244 0.611062 AAGACACGACCTCCATCGGA 60.611 55.000 0.00 0.00 46.56 4.55
244 245 0.179134 GAAGACACGACCTCCATCGG 60.179 60.000 0.00 0.00 46.56 4.18
246 247 2.028930 ACAAGAAGACACGACCTCCATC 60.029 50.000 0.00 0.00 0.00 3.51
247 248 1.971357 ACAAGAAGACACGACCTCCAT 59.029 47.619 0.00 0.00 0.00 3.41
248 249 1.068588 CACAAGAAGACACGACCTCCA 59.931 52.381 0.00 0.00 0.00 3.86
249 250 1.068741 ACACAAGAAGACACGACCTCC 59.931 52.381 0.00 0.00 0.00 4.30
250 251 2.128035 CACACAAGAAGACACGACCTC 58.872 52.381 0.00 0.00 0.00 3.85
251 252 1.806623 GCACACAAGAAGACACGACCT 60.807 52.381 0.00 0.00 0.00 3.85
252 253 0.582005 GCACACAAGAAGACACGACC 59.418 55.000 0.00 0.00 0.00 4.79
253 254 1.523095 GAGCACACAAGAAGACACGAC 59.477 52.381 0.00 0.00 0.00 4.34
254 255 1.409064 AGAGCACACAAGAAGACACGA 59.591 47.619 0.00 0.00 0.00 4.35
255 256 1.524355 CAGAGCACACAAGAAGACACG 59.476 52.381 0.00 0.00 0.00 4.49
256 257 1.869767 CCAGAGCACACAAGAAGACAC 59.130 52.381 0.00 0.00 0.00 3.67
257 258 1.486310 ACCAGAGCACACAAGAAGACA 59.514 47.619 0.00 0.00 0.00 3.41
258 259 2.246719 ACCAGAGCACACAAGAAGAC 57.753 50.000 0.00 0.00 0.00 3.01
259 260 2.170397 TCAACCAGAGCACACAAGAAGA 59.830 45.455 0.00 0.00 0.00 2.87
260 261 2.547211 CTCAACCAGAGCACACAAGAAG 59.453 50.000 0.00 0.00 37.59 2.85
261 262 2.564771 CTCAACCAGAGCACACAAGAA 58.435 47.619 0.00 0.00 37.59 2.52
262 263 2.245159 CTCAACCAGAGCACACAAGA 57.755 50.000 0.00 0.00 37.59 3.02
282 283 2.557805 GTCGGTACACAGCGTCGA 59.442 61.111 0.00 0.00 45.68 4.20
283 284 2.868331 CGTCGGTACACAGCGTCG 60.868 66.667 0.00 2.10 46.71 5.12
348 354 1.079057 GTTTCCCCTGTCTCTCGCC 60.079 63.158 0.00 0.00 0.00 5.54
349 355 0.390472 CTGTTTCCCCTGTCTCTCGC 60.390 60.000 0.00 0.00 0.00 5.03
356 362 3.590574 GCCCCCTGTTTCCCCTGT 61.591 66.667 0.00 0.00 0.00 4.00
403 409 1.456287 AACCCTGGTTCTGGTCAGC 59.544 57.895 0.00 0.00 32.40 4.26
449 455 2.027949 GCTACCGACCTACCCACTGAT 61.028 57.143 0.00 0.00 0.00 2.90
450 456 0.682209 GCTACCGACCTACCCACTGA 60.682 60.000 0.00 0.00 0.00 3.41
463 473 0.541863 AACATGGAGGGAAGCTACCG 59.458 55.000 0.00 0.00 0.00 4.02
511 521 4.288670 ACCAGTAAGTACATCGACATCG 57.711 45.455 0.00 0.00 41.45 3.84
517 527 3.306973 TCGTCGTACCAGTAAGTACATCG 59.693 47.826 0.00 6.14 42.29 3.84
526 536 1.745115 CGGGGTCGTCGTACCAGTA 60.745 63.158 13.49 0.00 41.67 2.74
527 537 3.058160 CGGGGTCGTCGTACCAGT 61.058 66.667 13.49 0.00 41.67 4.00
530 540 3.752339 AAGCGGGGTCGTCGTACC 61.752 66.667 5.57 5.57 38.89 3.34
532 542 2.985282 ACAAGCGGGGTCGTCGTA 60.985 61.111 0.00 0.00 38.89 3.43
533 543 4.657824 CACAAGCGGGGTCGTCGT 62.658 66.667 0.00 0.00 38.89 4.34
534 544 4.351938 TCACAAGCGGGGTCGTCG 62.352 66.667 0.00 0.00 38.89 5.12
535 545 2.737376 GTCACAAGCGGGGTCGTC 60.737 66.667 0.00 0.00 38.89 4.20
536 546 4.657824 CGTCACAAGCGGGGTCGT 62.658 66.667 0.00 0.00 38.89 4.34
537 547 4.657824 ACGTCACAAGCGGGGTCG 62.658 66.667 0.00 0.00 39.81 4.79
538 548 2.737376 GACGTCACAAGCGGGGTC 60.737 66.667 11.55 0.00 0.00 4.46
539 549 4.309950 GGACGTCACAAGCGGGGT 62.310 66.667 18.91 0.00 0.00 4.95
540 550 4.308458 TGGACGTCACAAGCGGGG 62.308 66.667 18.91 0.00 0.00 5.73
541 551 3.041940 GTGGACGTCACAAGCGGG 61.042 66.667 18.91 0.00 45.39 6.13
554 565 2.753452 GTGAGTACGGATTCTCAGTGGA 59.247 50.000 0.00 0.00 40.63 4.02
571 582 2.655364 CCGTATCTGCCGCGTGAG 60.655 66.667 4.92 0.00 0.00 3.51
572 583 4.201679 CCCGTATCTGCCGCGTGA 62.202 66.667 4.92 0.06 0.00 4.35
608 619 2.536761 AACGATCAACCCGTTTCTCA 57.463 45.000 0.00 0.00 46.52 3.27
685 718 0.035458 ACTGAAAGGTTCTCTGCCCG 59.965 55.000 0.00 0.00 39.30 6.13
687 720 2.550830 TCACTGAAAGGTTCTCTGCC 57.449 50.000 0.00 0.00 39.30 4.85
688 721 2.746362 CCATCACTGAAAGGTTCTCTGC 59.254 50.000 0.00 0.00 39.30 4.26
691 724 3.703001 TCCCATCACTGAAAGGTTCTC 57.297 47.619 1.47 0.00 39.30 2.87
719 752 1.909287 TGGTGTACTACTGCCGGCA 60.909 57.895 30.59 30.59 0.00 5.69
722 755 1.153901 CGGTGGTGTACTACTGCCG 60.154 63.158 0.00 5.82 39.00 5.69
723 756 1.217244 CCGGTGGTGTACTACTGCC 59.783 63.158 0.00 0.00 33.03 4.85
724 757 1.447314 GCCGGTGGTGTACTACTGC 60.447 63.158 1.90 0.99 33.03 4.40
725 758 1.153901 CGCCGGTGGTGTACTACTG 60.154 63.158 7.26 0.81 34.01 2.74
726 759 1.604593 ACGCCGGTGGTGTACTACT 60.605 57.895 21.14 0.00 45.32 2.57
727 760 2.964978 ACGCCGGTGGTGTACTAC 59.035 61.111 21.14 0.00 45.32 2.73
758 796 0.798389 GCATTTCTTTCTTCCGCGGC 60.798 55.000 23.51 0.00 0.00 6.53
787 825 3.129502 CCTGGCATGCGACCTGTG 61.130 66.667 12.44 0.00 0.00 3.66
839 877 3.842923 CGATGCCAGAGCGGGAGT 61.843 66.667 0.00 0.00 44.31 3.85
848 887 0.804989 GAACCAAGGAACGATGCCAG 59.195 55.000 0.00 0.00 0.00 4.85
853 892 0.953960 GCCGTGAACCAAGGAACGAT 60.954 55.000 12.72 0.00 38.27 3.73
874 913 4.918129 ACGAACGACACAGCGCGT 62.918 61.111 8.43 0.00 43.39 6.01
876 915 2.167918 GAACGAACGACACAGCGC 59.832 61.111 0.00 0.00 33.86 5.92
877 916 1.606350 GAGGAACGAACGACACAGCG 61.606 60.000 0.14 0.00 37.29 5.18
878 917 1.606350 CGAGGAACGAACGACACAGC 61.606 60.000 0.14 0.00 45.77 4.40
879 918 0.317603 ACGAGGAACGAACGACACAG 60.318 55.000 0.14 0.00 45.77 3.66
880 919 0.101040 AACGAGGAACGAACGACACA 59.899 50.000 0.14 0.00 45.77 3.72
881 920 1.188791 GAAACGAGGAACGAACGACAC 59.811 52.381 0.14 0.00 45.77 3.67
882 921 1.202279 TGAAACGAGGAACGAACGACA 60.202 47.619 0.14 0.00 45.77 4.35
883 922 1.450905 CTGAAACGAGGAACGAACGAC 59.549 52.381 0.14 0.00 45.77 4.34
884 923 1.762419 CTGAAACGAGGAACGAACGA 58.238 50.000 0.14 0.00 45.77 3.85
885 924 0.161024 GCTGAAACGAGGAACGAACG 59.839 55.000 0.00 0.00 45.77 3.95
886 925 0.511653 GGCTGAAACGAGGAACGAAC 59.488 55.000 0.00 0.00 45.77 3.95
887 926 0.601841 GGGCTGAAACGAGGAACGAA 60.602 55.000 0.00 0.00 45.77 3.85
1017 1116 2.741092 GGAGCACTGACCCGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
1028 1127 5.631512 CTATTTATAGAAGAGCACGGAGCAC 59.368 44.000 4.92 0.00 37.95 4.40
1054 1153 0.601057 TCTTGAAGCCATCGACGTGA 59.399 50.000 0.00 0.00 0.00 4.35
1070 1169 4.393834 GGGACTTGAGCTCTTTTTCTCTT 58.606 43.478 16.19 0.00 0.00 2.85
1078 1177 1.846712 GCAGGGGGACTTGAGCTCTT 61.847 60.000 16.19 0.00 40.48 2.85
1090 1189 0.984230 TGAAGTAGAAGTGCAGGGGG 59.016 55.000 0.00 0.00 0.00 5.40
1110 1212 3.677284 CTGATGCAGCCGACCAGCT 62.677 63.158 0.00 0.00 46.45 4.24
1286 1399 2.746904 CGTTGCCACCATAAGATCAACA 59.253 45.455 0.00 0.00 35.01 3.33
1294 1407 0.390603 CGTCCTCGTTGCCACCATAA 60.391 55.000 0.00 0.00 0.00 1.90
1297 1410 3.220999 CTCGTCCTCGTTGCCACCA 62.221 63.158 0.00 0.00 38.33 4.17
1415 1528 0.912487 TCAGTTAGTTCGGCCCCCAT 60.912 55.000 0.00 0.00 0.00 4.00
1450 1563 1.846648 CGTTGCAGACGTGACAGAC 59.153 57.895 0.00 0.00 46.49 3.51
1451 1564 4.319249 CGTTGCAGACGTGACAGA 57.681 55.556 0.00 0.00 46.49 3.41
1460 1580 2.027073 GTGCACGGATCGTTGCAGA 61.027 57.895 17.61 0.00 41.42 4.26
1461 1581 2.476051 GTGCACGGATCGTTGCAG 59.524 61.111 17.61 0.00 41.42 4.41
1502 1628 8.725148 TCACACACAAAAATTTTAGCAAACATT 58.275 25.926 3.34 0.00 0.00 2.71
1512 1638 7.209475 CCCTACTGATCACACACAAAAATTTT 58.791 34.615 0.00 0.00 0.00 1.82
1513 1639 6.239289 CCCCTACTGATCACACACAAAAATTT 60.239 38.462 0.00 0.00 0.00 1.82
1514 1640 5.243730 CCCCTACTGATCACACACAAAAATT 59.756 40.000 0.00 0.00 0.00 1.82
1515 1641 4.766891 CCCCTACTGATCACACACAAAAAT 59.233 41.667 0.00 0.00 0.00 1.82
1516 1642 4.141287 CCCCTACTGATCACACACAAAAA 58.859 43.478 0.00 0.00 0.00 1.94
1563 1689 9.751542 CGTAAGTCCTAAATAAGAAGATCATGT 57.248 33.333 0.00 0.00 0.00 3.21
1564 1690 9.967346 TCGTAAGTCCTAAATAAGAAGATCATG 57.033 33.333 0.00 0.00 39.48 3.07
1576 1702 2.361438 CCTCCGCTCGTAAGTCCTAAAT 59.639 50.000 0.00 0.00 39.48 1.40
1577 1703 1.747355 CCTCCGCTCGTAAGTCCTAAA 59.253 52.381 0.00 0.00 39.48 1.85
1578 1704 1.340405 ACCTCCGCTCGTAAGTCCTAA 60.340 52.381 0.00 0.00 39.48 2.69
1579 1705 0.254178 ACCTCCGCTCGTAAGTCCTA 59.746 55.000 0.00 0.00 39.48 2.94
1587 1713 3.450115 GGCTGTACCTCCGCTCGT 61.450 66.667 0.00 0.00 34.51 4.18
1610 1736 7.001674 TGGACTTTACAATACACAAATCCAGT 58.998 34.615 0.00 0.00 0.00 4.00
1612 1738 9.693739 ATATGGACTTTACAATACACAAATCCA 57.306 29.630 0.00 0.00 36.96 3.41
1620 1746 6.007485 TGGCCATATGGACTTTACAATACA 57.993 37.500 28.03 0.59 45.91 2.29
1634 1760 5.635278 TCAGATACCCATATGGCCATATG 57.365 43.478 41.29 41.29 46.31 1.78
1635 1761 6.156089 AGATCAGATACCCATATGGCCATAT 58.844 40.000 29.24 29.24 37.83 1.78
1636 1762 5.541775 AGATCAGATACCCATATGGCCATA 58.458 41.667 27.36 27.36 37.83 2.74
1637 1763 4.378047 AGATCAGATACCCATATGGCCAT 58.622 43.478 24.45 24.45 37.83 4.40
1638 1764 3.806975 AGATCAGATACCCATATGGCCA 58.193 45.455 16.97 8.56 37.83 5.36
1639 1765 4.346418 CCTAGATCAGATACCCATATGGCC 59.654 50.000 16.97 0.00 37.83 5.36
1640 1766 5.211973 TCCTAGATCAGATACCCATATGGC 58.788 45.833 16.97 2.46 37.83 4.40
1641 1767 6.439487 ACTCCTAGATCAGATACCCATATGG 58.561 44.000 15.41 15.41 41.37 2.74
1642 1768 8.278639 AGTACTCCTAGATCAGATACCCATATG 58.721 40.741 0.00 0.00 0.00 1.78
1648 1774 5.184287 GCCAAGTACTCCTAGATCAGATACC 59.816 48.000 0.00 0.00 0.00 2.73
1654 1780 3.708451 TGTGCCAAGTACTCCTAGATCA 58.292 45.455 0.00 0.00 0.00 2.92
1661 1787 1.066430 TCCGATTGTGCCAAGTACTCC 60.066 52.381 0.00 0.00 0.00 3.85
1662 1788 2.380084 TCCGATTGTGCCAAGTACTC 57.620 50.000 0.00 0.00 0.00 2.59
1663 1789 2.851263 TTCCGATTGTGCCAAGTACT 57.149 45.000 0.00 0.00 0.00 2.73
1665 1791 3.938963 GAGATTTCCGATTGTGCCAAGTA 59.061 43.478 0.00 0.00 0.00 2.24
1666 1792 2.749621 GAGATTTCCGATTGTGCCAAGT 59.250 45.455 0.00 0.00 0.00 3.16
1667 1793 3.012518 AGAGATTTCCGATTGTGCCAAG 58.987 45.455 0.00 0.00 0.00 3.61
1668 1794 3.071874 AGAGATTTCCGATTGTGCCAA 57.928 42.857 0.00 0.00 0.00 4.52
1669 1795 2.749076 CAAGAGATTTCCGATTGTGCCA 59.251 45.455 0.00 0.00 0.00 4.92
1670 1796 2.749621 ACAAGAGATTTCCGATTGTGCC 59.250 45.455 0.00 0.00 33.09 5.01
1679 1805 9.747293 GGTAAGTATGTAGTACAAGAGATTTCC 57.253 37.037 7.16 2.83 35.67 3.13
1685 1811 8.976986 AAAACGGTAAGTATGTAGTACAAGAG 57.023 34.615 7.16 0.00 35.67 2.85
1742 1868 8.052141 TGTTTGGACATATATGTTGGAAGATGA 58.948 33.333 19.19 0.00 41.95 2.92
1781 1982 9.836864 TTCATTGATGTTGCTCACTTATATAGT 57.163 29.630 0.00 0.00 37.68 2.12
1789 1990 8.834465 GTCTATTATTCATTGATGTTGCTCACT 58.166 33.333 0.00 0.00 0.00 3.41
1790 1991 8.615211 TGTCTATTATTCATTGATGTTGCTCAC 58.385 33.333 0.00 0.00 0.00 3.51
1791 1992 8.735692 TGTCTATTATTCATTGATGTTGCTCA 57.264 30.769 0.00 0.00 0.00 4.26
1801 2002 9.567917 CGTTCACGTATTGTCTATTATTCATTG 57.432 33.333 0.00 0.00 34.11 2.82
1806 2007 6.976349 TCAGCGTTCACGTATTGTCTATTATT 59.024 34.615 0.62 0.00 42.22 1.40
1813 2014 2.592194 TCTCAGCGTTCACGTATTGTC 58.408 47.619 0.62 0.00 42.22 3.18
1814 2015 2.228103 TCTCTCAGCGTTCACGTATTGT 59.772 45.455 0.62 0.00 42.22 2.71
1815 2016 2.863739 TCTCTCAGCGTTCACGTATTG 58.136 47.619 0.62 0.00 42.22 1.90
1816 2017 3.570926 TTCTCTCAGCGTTCACGTATT 57.429 42.857 0.62 0.00 42.22 1.89
1817 2018 3.243336 GTTTCTCTCAGCGTTCACGTAT 58.757 45.455 0.62 0.00 42.22 3.06
1818 2019 2.033675 TGTTTCTCTCAGCGTTCACGTA 59.966 45.455 0.62 0.00 42.22 3.57
1819 2020 1.202371 TGTTTCTCTCAGCGTTCACGT 60.202 47.619 0.62 0.00 42.22 4.49
1820 2021 1.453524 CTGTTTCTCTCAGCGTTCACG 59.546 52.381 0.00 0.00 43.27 4.35
1821 2022 2.728839 CTCTGTTTCTCTCAGCGTTCAC 59.271 50.000 0.00 0.00 33.48 3.18
1822 2023 2.362397 ACTCTGTTTCTCTCAGCGTTCA 59.638 45.455 0.00 0.00 33.48 3.18
1823 2024 3.019933 ACTCTGTTTCTCTCAGCGTTC 57.980 47.619 0.00 0.00 33.48 3.95
1824 2025 3.318275 TGTACTCTGTTTCTCTCAGCGTT 59.682 43.478 0.00 0.00 33.75 4.84
1825 2026 2.885266 TGTACTCTGTTTCTCTCAGCGT 59.115 45.455 0.00 0.00 35.50 5.07
1826 2027 3.560902 TGTACTCTGTTTCTCTCAGCG 57.439 47.619 0.00 0.00 33.48 5.18
1827 2028 3.616379 GCATGTACTCTGTTTCTCTCAGC 59.384 47.826 0.00 0.00 33.48 4.26
1828 2029 3.856521 CGCATGTACTCTGTTTCTCTCAG 59.143 47.826 0.00 0.00 0.00 3.35
1829 2030 3.255888 ACGCATGTACTCTGTTTCTCTCA 59.744 43.478 0.00 0.00 0.00 3.27
1836 2037 2.831685 TGGAACGCATGTACTCTGTT 57.168 45.000 0.00 0.00 0.00 3.16
1840 2041 2.309528 TGGATGGAACGCATGTACTC 57.690 50.000 0.00 0.00 0.00 2.59
1848 2049 0.608035 TTGGGACTTGGATGGAACGC 60.608 55.000 0.00 0.00 0.00 4.84
1852 2053 0.407918 GGGTTTGGGACTTGGATGGA 59.592 55.000 0.00 0.00 0.00 3.41
1856 2057 0.184933 CACAGGGTTTGGGACTTGGA 59.815 55.000 0.00 0.00 28.76 3.53
1861 2062 0.822121 GGTGACACAGGGTTTGGGAC 60.822 60.000 8.08 0.00 33.14 4.46
1868 2069 1.645402 AAAGCAGGGTGACACAGGGT 61.645 55.000 8.08 0.00 0.00 4.34
1871 2072 0.466189 ACCAAAGCAGGGTGACACAG 60.466 55.000 8.08 0.00 37.23 3.66
1878 2079 2.521708 GTGGCACCAAAGCAGGGT 60.522 61.111 6.29 0.00 39.88 4.34
1883 2084 3.365265 CCTCCGTGGCACCAAAGC 61.365 66.667 12.86 0.00 0.00 3.51
1886 2087 1.527380 GTTTCCTCCGTGGCACCAA 60.527 57.895 12.86 0.00 35.26 3.67
1906 2107 3.597728 GAGGAGGCGGCGGACTAG 61.598 72.222 9.78 0.00 0.00 2.57
1917 2118 2.612251 GAGGGAGGAGGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
1920 2121 4.179599 GGGGAGGGAGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1921 2122 4.179599 GGGGGAGGGAGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1935 2136 1.410224 GGCTAGTTGATGGAAAGGGGG 60.410 57.143 0.00 0.00 0.00 5.40
1936 2137 1.747206 CGGCTAGTTGATGGAAAGGGG 60.747 57.143 0.00 0.00 0.00 4.79
1942 2143 1.141019 GCGTCGGCTAGTTGATGGA 59.859 57.895 0.00 0.00 35.83 3.41
1945 2146 1.141881 CTGGCGTCGGCTAGTTGAT 59.858 57.895 20.29 0.00 42.31 2.57
1971 2172 3.134127 GGCATGGGCTTCACCGAC 61.134 66.667 0.00 0.00 40.62 4.79
1981 2182 4.023137 CCCTTGAGTTGGCATGGG 57.977 61.111 0.00 0.00 44.00 4.00
1985 2186 0.178992 CACCTTCCCTTGAGTTGGCA 60.179 55.000 0.00 0.00 0.00 4.92
1986 2187 0.895559 CCACCTTCCCTTGAGTTGGC 60.896 60.000 0.00 0.00 0.00 4.52
1989 2190 0.111253 CTGCCACCTTCCCTTGAGTT 59.889 55.000 0.00 0.00 0.00 3.01
1990 2191 1.763770 CTGCCACCTTCCCTTGAGT 59.236 57.895 0.00 0.00 0.00 3.41
1993 2194 3.058160 CGCTGCCACCTTCCCTTG 61.058 66.667 0.00 0.00 0.00 3.61
1994 2195 3.249189 TCGCTGCCACCTTCCCTT 61.249 61.111 0.00 0.00 0.00 3.95
1995 2196 3.710722 CTCGCTGCCACCTTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
2006 2207 0.886490 AGGAACAAAGTGCCTCGCTG 60.886 55.000 0.00 0.00 36.78 5.18
2007 2208 0.603975 GAGGAACAAAGTGCCTCGCT 60.604 55.000 8.37 0.00 46.99 4.93
2023 2224 7.812133 CTGTCAACCAGAACTCCTCATGAGG 62.812 52.000 32.60 32.60 46.02 3.86
2024 2225 4.858732 CTGTCAACCAGAACTCCTCATGAG 60.859 50.000 16.24 16.24 44.49 2.90
2025 2226 2.972021 TGTCAACCAGAACTCCTCATGA 59.028 45.455 0.00 0.00 0.00 3.07
2026 2227 3.332919 CTGTCAACCAGAACTCCTCATG 58.667 50.000 0.00 0.00 44.49 3.07
2027 2228 2.304180 CCTGTCAACCAGAACTCCTCAT 59.696 50.000 0.00 0.00 44.49 2.90
2028 2229 1.694150 CCTGTCAACCAGAACTCCTCA 59.306 52.381 0.00 0.00 44.49 3.86
2029 2230 1.694696 ACCTGTCAACCAGAACTCCTC 59.305 52.381 0.00 0.00 44.49 3.71
2030 2231 1.694696 GACCTGTCAACCAGAACTCCT 59.305 52.381 0.00 0.00 44.49 3.69
2031 2232 1.605712 CGACCTGTCAACCAGAACTCC 60.606 57.143 0.00 0.00 44.49 3.85
2032 2233 1.605712 CCGACCTGTCAACCAGAACTC 60.606 57.143 0.00 0.00 44.49 3.01
2033 2234 0.393077 CCGACCTGTCAACCAGAACT 59.607 55.000 0.00 0.00 44.49 3.01
2034 2235 0.602905 CCCGACCTGTCAACCAGAAC 60.603 60.000 0.00 0.00 44.49 3.01
2035 2236 1.752198 CCCGACCTGTCAACCAGAA 59.248 57.895 0.00 0.00 44.49 3.02
2036 2237 2.214216 CCCCGACCTGTCAACCAGA 61.214 63.158 0.00 0.00 44.49 3.86
2037 2238 2.347490 CCCCGACCTGTCAACCAG 59.653 66.667 0.00 0.00 41.15 4.00
2038 2239 2.676319 TACCCCCGACCTGTCAACCA 62.676 60.000 0.00 0.00 0.00 3.67
2039 2240 1.896122 CTACCCCCGACCTGTCAACC 61.896 65.000 0.00 0.00 0.00 3.77
2040 2241 1.595357 CTACCCCCGACCTGTCAAC 59.405 63.158 0.00 0.00 0.00 3.18
2041 2242 2.288025 GCTACCCCCGACCTGTCAA 61.288 63.158 0.00 0.00 0.00 3.18
2042 2243 2.682494 GCTACCCCCGACCTGTCA 60.682 66.667 0.00 0.00 0.00 3.58
2043 2244 3.834799 CGCTACCCCCGACCTGTC 61.835 72.222 0.00 0.00 0.00 3.51
2046 2247 4.835891 CTCCGCTACCCCCGACCT 62.836 72.222 0.00 0.00 0.00 3.85
2049 2250 3.812544 TAGCTCCGCTACCCCCGA 61.813 66.667 0.00 0.00 40.44 5.14
2060 2261 0.317938 CGACGCCATGTAGTAGCTCC 60.318 60.000 0.00 0.00 0.00 4.70
2062 2263 1.734137 CCGACGCCATGTAGTAGCT 59.266 57.895 0.00 0.00 0.00 3.32
2068 2269 2.894879 GCATGCCGACGCCATGTA 60.895 61.111 18.75 0.00 0.00 2.29
2090 2291 2.813474 TTGCGCGAGGGAACGATG 60.813 61.111 12.10 0.00 35.09 3.84
2103 2308 4.764336 CTGTGCCATGCCGTTGCG 62.764 66.667 0.00 0.00 41.78 4.85
2106 2311 3.367743 CAGCTGTGCCATGCCGTT 61.368 61.111 5.25 0.00 0.00 4.44
2110 2315 1.461091 ATATGCCAGCTGTGCCATGC 61.461 55.000 20.12 12.74 0.00 4.06
2111 2316 1.900245 TATATGCCAGCTGTGCCATG 58.100 50.000 20.12 3.26 0.00 3.66
2112 2317 2.893215 ATATATGCCAGCTGTGCCAT 57.107 45.000 20.12 16.90 0.00 4.40
2120 2325 2.359900 GTGCCACCTATATATGCCAGC 58.640 52.381 0.00 0.00 0.00 4.85
2122 2327 1.277842 CCGTGCCACCTATATATGCCA 59.722 52.381 0.00 0.00 0.00 4.92
2123 2328 1.278127 ACCGTGCCACCTATATATGCC 59.722 52.381 0.00 0.00 0.00 4.40
2126 2331 2.301870 CACCACCGTGCCACCTATATAT 59.698 50.000 0.00 0.00 32.04 0.86
2127 2332 1.689813 CACCACCGTGCCACCTATATA 59.310 52.381 0.00 0.00 32.04 0.86
2128 2333 0.468226 CACCACCGTGCCACCTATAT 59.532 55.000 0.00 0.00 32.04 0.86
2129 2334 1.618876 CCACCACCGTGCCACCTATA 61.619 60.000 0.00 0.00 38.79 1.31
2135 2340 4.947147 GAAGCCACCACCGTGCCA 62.947 66.667 0.00 0.00 38.79 4.92
2155 2360 4.129737 CGATCACCACCGACCGCT 62.130 66.667 0.00 0.00 0.00 5.52
2158 2363 2.125673 CACCGATCACCACCGACC 60.126 66.667 0.00 0.00 0.00 4.79
2159 2364 1.956629 ATCCACCGATCACCACCGAC 61.957 60.000 0.00 0.00 0.00 4.79
2160 2365 1.672854 GATCCACCGATCACCACCGA 61.673 60.000 0.00 0.00 43.87 4.69
2161 2366 1.227263 GATCCACCGATCACCACCG 60.227 63.158 0.00 0.00 43.87 4.94
2162 2367 0.179073 CAGATCCACCGATCACCACC 60.179 60.000 3.15 0.00 46.42 4.61
2164 2369 1.971505 GCCAGATCCACCGATCACCA 61.972 60.000 3.15 0.00 46.42 4.17
2165 2370 1.227674 GCCAGATCCACCGATCACC 60.228 63.158 3.15 0.00 46.42 4.02
2167 2372 1.522092 GTGCCAGATCCACCGATCA 59.478 57.895 3.15 0.00 46.42 2.92
2169 2374 1.402896 ATCGTGCCAGATCCACCGAT 61.403 55.000 0.00 0.00 0.00 4.18
2170 2375 2.058001 ATCGTGCCAGATCCACCGA 61.058 57.895 0.00 0.00 0.00 4.69
2175 2385 0.249657 GAGTCCATCGTGCCAGATCC 60.250 60.000 0.00 0.00 0.00 3.36
2179 2389 1.153489 CTGGAGTCCATCGTGCCAG 60.153 63.158 13.56 0.00 40.03 4.85
2180 2390 0.977627 ATCTGGAGTCCATCGTGCCA 60.978 55.000 13.56 0.00 30.82 4.92
2198 2408 3.523564 ACTGGGTTGCTACCATGTTAGAT 59.476 43.478 19.19 0.00 46.96 1.98
2202 2412 1.144913 ACACTGGGTTGCTACCATGTT 59.855 47.619 19.19 5.56 46.96 2.71
2205 2415 0.609131 GCACACTGGGTTGCTACCAT 60.609 55.000 19.19 0.96 46.96 3.55
2212 2422 3.357079 GCGAGGCACACTGGGTTG 61.357 66.667 0.00 0.00 0.00 3.77
2213 2423 3.414136 TTGCGAGGCACACTGGGTT 62.414 57.895 0.00 0.00 38.71 4.11
2214 2424 3.872603 TTGCGAGGCACACTGGGT 61.873 61.111 0.00 0.00 38.71 4.51
2250 2460 2.477825 CTAGCATGCATGTTAGTCGCT 58.522 47.619 31.45 21.62 36.99 4.93
2267 2477 2.809601 GTGGACGTGCCGCACTAG 60.810 66.667 20.87 9.20 46.72 2.57
2274 2484 3.284449 GGTGGTTGTGGACGTGCC 61.284 66.667 4.04 0.43 37.10 5.01
2277 2487 1.684386 TTACGGGTGGTTGTGGACGT 61.684 55.000 0.00 0.00 38.23 4.34
2280 2490 0.393820 GAGTTACGGGTGGTTGTGGA 59.606 55.000 0.00 0.00 0.00 4.02
2292 2502 2.783828 ATGCCGATGAGAGAGTTACG 57.216 50.000 0.00 0.00 0.00 3.18
2300 2510 0.462581 GCCTCACAATGCCGATGAGA 60.463 55.000 2.08 0.00 42.07 3.27
2304 2514 2.514592 CCGCCTCACAATGCCGAT 60.515 61.111 0.00 0.00 0.00 4.18
2307 2517 3.512516 GAGCCGCCTCACAATGCC 61.513 66.667 0.00 0.00 38.03 4.40
2308 2518 2.437359 AGAGCCGCCTCACAATGC 60.437 61.111 0.00 0.00 40.68 3.56
2310 2520 1.992277 AGGAGAGCCGCCTCACAAT 60.992 57.895 0.00 0.00 40.68 2.71
2311 2521 2.604686 AGGAGAGCCGCCTCACAA 60.605 61.111 0.00 0.00 40.68 3.33
2321 2534 0.179936 CCCATTGTGAGGAGGAGAGC 59.820 60.000 0.00 0.00 0.00 4.09
2333 2546 3.091545 CCATCAGCTTGTAACCCATTGT 58.908 45.455 0.00 0.00 0.00 2.71
2337 2550 3.264574 GCCATCAGCTTGTAACCCA 57.735 52.632 0.00 0.00 38.99 4.51
2348 2561 1.821136 GGGAAGGAAACAAGCCATCAG 59.179 52.381 0.00 0.00 0.00 2.90
2379 2592 2.083835 TAGAATACCGCCGGAGCAGC 62.084 60.000 11.71 0.00 39.83 5.25
2382 2595 1.289380 CCTAGAATACCGCCGGAGC 59.711 63.158 11.71 0.00 0.00 4.70
2385 2598 0.896940 TAGCCCTAGAATACCGCCGG 60.897 60.000 0.00 0.00 0.00 6.13
2400 2613 1.700042 CCCTGACCTGGTCCATAGCC 61.700 65.000 23.42 0.00 0.00 3.93
2402 2615 1.062886 TCTCCCTGACCTGGTCCATAG 60.063 57.143 23.42 14.07 0.00 2.23
2405 2618 0.104672 TTTCTCCCTGACCTGGTCCA 60.105 55.000 23.42 10.95 0.00 4.02
2406 2619 1.210722 GATTTCTCCCTGACCTGGTCC 59.789 57.143 23.42 6.84 0.00 4.46
2407 2620 1.210722 GGATTTCTCCCTGACCTGGTC 59.789 57.143 19.96 19.96 35.28 4.02
2410 2623 2.996631 CAAGGATTTCTCCCTGACCTG 58.003 52.381 0.00 0.00 43.21 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.