Multiple sequence alignment - TraesCS7A01G448800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G448800 chr7A 100.000 6377 0 0 1 6377 642943458 642949834 0.000000e+00 11777
1 TraesCS7A01G448800 chr7A 88.496 226 21 3 3132 3357 159740002 159739782 1.050000e-67 268
2 TraesCS7A01G448800 chr7B 91.026 4502 251 79 1179 5615 605446824 605451237 0.000000e+00 5934
3 TraesCS7A01G448800 chr7B 86.524 653 54 11 5661 6295 605451242 605451878 0.000000e+00 688
4 TraesCS7A01G448800 chr7B 91.503 306 13 3 407 703 605427095 605427396 5.950000e-110 409
5 TraesCS7A01G448800 chr7B 86.016 379 24 10 4 374 605426737 605427094 4.670000e-101 379
6 TraesCS7A01G448800 chr7B 90.714 280 11 3 863 1134 605446037 605446309 6.080000e-95 359
7 TraesCS7A01G448800 chr7B 86.111 72 7 3 6051 6122 605481976 605482044 2.470000e-09 75
8 TraesCS7A01G448800 chr7D 94.501 2928 104 24 2722 5615 557405719 557408623 0.000000e+00 4462
9 TraesCS7A01G448800 chr7D 89.186 2802 158 55 4 2720 557402894 557405635 0.000000e+00 3362
10 TraesCS7A01G448800 chr7D 86.122 490 36 21 5822 6295 557408846 557409319 3.430000e-137 499
11 TraesCS7A01G448800 chr7D 83.227 471 65 9 2923 3384 127759779 127759314 2.750000e-113 420
12 TraesCS7A01G448800 chr7D 93.143 175 11 1 5661 5834 557408628 557408802 8.200000e-64 255
13 TraesCS7A01G448800 chr7D 96.825 63 2 0 6314 6376 557409310 557409372 8.740000e-19 106
14 TraesCS7A01G448800 chr3B 89.931 2026 135 37 1562 3547 809798010 809800006 0.000000e+00 2547
15 TraesCS7A01G448800 chr3B 89.301 1888 145 31 1565 3413 799272046 799270177 0.000000e+00 2314
16 TraesCS7A01G448800 chr3B 90.385 156 5 2 3408 3563 799245090 799244945 5.040000e-46 196
17 TraesCS7A01G448800 chr5B 90.074 806 49 18 1565 2349 643128771 643127976 0.000000e+00 1016
18 TraesCS7A01G448800 chr5B 90.777 759 47 11 2808 3563 643127932 643127194 0.000000e+00 992
19 TraesCS7A01G448800 chr5B 83.156 469 67 9 2920 3384 635383441 635383901 9.890000e-113 418
20 TraesCS7A01G448800 chr5D 91.052 637 52 4 3986 4622 254394669 254395300 0.000000e+00 856
21 TraesCS7A01G448800 chr2D 90.881 636 57 1 3986 4621 67031519 67032153 0.000000e+00 852
22 TraesCS7A01G448800 chr2D 86.151 621 65 10 1887 2506 190427704 190428304 0.000000e+00 651
23 TraesCS7A01G448800 chr2D 86.454 251 29 3 3134 3384 540217878 540218123 2.930000e-68 270
24 TraesCS7A01G448800 chr3A 81.708 1077 130 36 2261 3319 269229360 269230387 0.000000e+00 835
25 TraesCS7A01G448800 chr3A 81.628 860 114 26 2267 3110 53306361 53305530 0.000000e+00 673
26 TraesCS7A01G448800 chr5A 81.104 1069 129 34 2267 3319 705230838 705229827 0.000000e+00 787
27 TraesCS7A01G448800 chr5A 87.419 620 59 10 1894 2512 180352480 180353081 0.000000e+00 695
28 TraesCS7A01G448800 chr6B 85.610 688 82 12 1887 2573 33373089 33372418 0.000000e+00 706
29 TraesCS7A01G448800 chr6B 80.842 736 97 23 2597 3319 92429487 92430191 7.270000e-149 538
30 TraesCS7A01G448800 chrUn 87.279 621 61 10 1887 2506 94927788 94928391 0.000000e+00 693
31 TraesCS7A01G448800 chr6D 86.774 620 65 9 1888 2506 142864216 142864819 0.000000e+00 675
32 TraesCS7A01G448800 chr6D 86.124 627 69 9 1887 2512 7891474 7890865 0.000000e+00 660


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G448800 chr7A 642943458 642949834 6376 False 11777.0 11777 100.000000 1 6377 1 chr7A.!!$F1 6376
1 TraesCS7A01G448800 chr7B 605446037 605451878 5841 False 2327.0 5934 89.421333 863 6295 3 chr7B.!!$F3 5432
2 TraesCS7A01G448800 chr7B 605426737 605427396 659 False 394.0 409 88.759500 4 703 2 chr7B.!!$F2 699
3 TraesCS7A01G448800 chr7D 557402894 557409372 6478 False 1736.8 4462 91.955400 4 6376 5 chr7D.!!$F1 6372
4 TraesCS7A01G448800 chr3B 809798010 809800006 1996 False 2547.0 2547 89.931000 1562 3547 1 chr3B.!!$F1 1985
5 TraesCS7A01G448800 chr3B 799270177 799272046 1869 True 2314.0 2314 89.301000 1565 3413 1 chr3B.!!$R2 1848
6 TraesCS7A01G448800 chr5B 643127194 643128771 1577 True 1004.0 1016 90.425500 1565 3563 2 chr5B.!!$R1 1998
7 TraesCS7A01G448800 chr5D 254394669 254395300 631 False 856.0 856 91.052000 3986 4622 1 chr5D.!!$F1 636
8 TraesCS7A01G448800 chr2D 67031519 67032153 634 False 852.0 852 90.881000 3986 4621 1 chr2D.!!$F1 635
9 TraesCS7A01G448800 chr2D 190427704 190428304 600 False 651.0 651 86.151000 1887 2506 1 chr2D.!!$F2 619
10 TraesCS7A01G448800 chr3A 269229360 269230387 1027 False 835.0 835 81.708000 2261 3319 1 chr3A.!!$F1 1058
11 TraesCS7A01G448800 chr3A 53305530 53306361 831 True 673.0 673 81.628000 2267 3110 1 chr3A.!!$R1 843
12 TraesCS7A01G448800 chr5A 705229827 705230838 1011 True 787.0 787 81.104000 2267 3319 1 chr5A.!!$R1 1052
13 TraesCS7A01G448800 chr5A 180352480 180353081 601 False 695.0 695 87.419000 1894 2512 1 chr5A.!!$F1 618
14 TraesCS7A01G448800 chr6B 33372418 33373089 671 True 706.0 706 85.610000 1887 2573 1 chr6B.!!$R1 686
15 TraesCS7A01G448800 chr6B 92429487 92430191 704 False 538.0 538 80.842000 2597 3319 1 chr6B.!!$F1 722
16 TraesCS7A01G448800 chrUn 94927788 94928391 603 False 693.0 693 87.279000 1887 2506 1 chrUn.!!$F1 619
17 TraesCS7A01G448800 chr6D 142864216 142864819 603 False 675.0 675 86.774000 1888 2506 1 chr6D.!!$F1 618
18 TraesCS7A01G448800 chr6D 7890865 7891474 609 True 660.0 660 86.124000 1887 2512 1 chr6D.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 259 0.037697 TAGCCTGCCACTTGTGTACG 60.038 55.0 0.00 0.00 0.00 3.67 F
429 453 0.037697 GCTGGTGTGGTGATCGTGTA 60.038 55.0 0.00 0.00 0.00 2.90 F
698 731 0.456221 TCGCTTTCGATCTCCAGTCC 59.544 55.0 0.00 0.00 40.21 3.85 F
1833 2396 0.250295 TGGAGTAACACAGTGGCTGC 60.250 55.0 5.31 6.11 34.37 5.25 F
2720 3413 0.036765 TGTACGGCTGGTTCACATCC 60.037 55.0 0.00 0.00 31.92 3.51 F
2893 3589 0.254178 CCCAGTCACTGATTCCAGGG 59.746 60.0 6.30 0.00 45.16 4.45 F
3397 4103 0.610232 GGATGGCTGTTTGGTCTGCT 60.610 55.0 0.00 0.00 33.78 4.24 F
4592 5298 0.396974 ACTTTGCACAGCTTTGGGGA 60.397 50.0 1.35 0.00 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 1255 0.382515 CACGCAACGAAAGGGGAAAA 59.617 50.000 0.00 0.00 0.00 2.29 R
1295 1847 0.693049 ACATCACCTCCCTGTTGACC 59.307 55.000 0.00 0.00 0.00 4.02 R
1947 2516 1.755959 TCGCCATTCCCATCCAAATTG 59.244 47.619 0.00 0.00 0.00 2.32 R
3386 4092 0.037975 CCAATGCCAGCAGACCAAAC 60.038 55.000 0.00 0.00 0.00 2.93 R
4570 5276 2.631267 CCCAAAGCTGTGCAAAGTTTT 58.369 42.857 12.55 12.55 31.59 2.43 R
4592 5298 7.780271 TGATTACTACCTAGAGTCATGATGTGT 59.220 37.037 0.00 0.00 0.00 3.72 R
5280 6022 0.251033 TCACCTGCTTGCTGCTCATT 60.251 50.000 0.00 0.00 43.37 2.57 R
6308 7144 0.033366 CTTTCCGGCCAAAAACCCAG 59.967 55.000 2.24 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.598869 CCCTTTTAGGCATGAGAAAAACTAAAC 59.401 37.037 0.00 0.00 32.73 2.01
48 49 5.539955 AGGCATGAGAAAAACTAAACCATGT 59.460 36.000 0.00 0.00 32.92 3.21
55 56 9.616156 TGAGAAAAACTAAACCATGTAGTACAA 57.384 29.630 7.16 0.00 31.48 2.41
57 58 9.398538 AGAAAAACTAAACCATGTAGTACAACA 57.601 29.630 7.16 0.00 31.48 3.33
117 131 6.101650 ACCTTTTAGGCCAAATTCTTCTTG 57.898 37.500 5.01 0.00 39.63 3.02
198 212 3.244078 TGAACATGTGTCCCTCTGTACAC 60.244 47.826 0.00 0.00 44.97 2.90
202 216 2.280552 TGTCCCTCTGTACACGGGC 61.281 63.158 17.20 13.47 37.89 6.13
218 232 3.370978 CACGGGCTGTCACTGTAAATAAG 59.629 47.826 0.00 0.00 0.00 1.73
225 239 5.179368 GCTGTCACTGTAAATAAGTTCAGCA 59.821 40.000 17.76 0.00 44.13 4.41
244 258 2.009774 CATAGCCTGCCACTTGTGTAC 58.990 52.381 0.00 0.00 0.00 2.90
245 259 0.037697 TAGCCTGCCACTTGTGTACG 60.038 55.000 0.00 0.00 0.00 3.67
246 260 1.597027 GCCTGCCACTTGTGTACGT 60.597 57.895 0.00 0.00 0.00 3.57
247 261 0.320073 GCCTGCCACTTGTGTACGTA 60.320 55.000 0.00 0.00 0.00 3.57
248 262 1.674817 GCCTGCCACTTGTGTACGTAT 60.675 52.381 0.00 0.00 0.00 3.06
285 299 2.027561 ACCACGGCAGAATTTGTAGCTA 60.028 45.455 0.00 0.00 0.00 3.32
344 367 3.545703 GGGATGTGCTAAGCATGTTACT 58.454 45.455 0.00 0.00 41.91 2.24
374 397 5.565509 TGCTTATTATGTCAGGTCAAACCA 58.434 37.500 0.00 0.00 41.95 3.67
381 405 2.503765 TGTCAGGTCAAACCACTCAAGA 59.496 45.455 0.00 0.00 41.95 3.02
413 437 0.607217 TCATCAGTGGTGCCTTGCTG 60.607 55.000 0.00 0.00 0.00 4.41
414 438 1.303888 ATCAGTGGTGCCTTGCTGG 60.304 57.895 0.00 0.00 39.35 4.85
415 439 2.072874 ATCAGTGGTGCCTTGCTGGT 62.073 55.000 0.00 0.00 38.35 4.00
416 440 2.203394 AGTGGTGCCTTGCTGGTG 60.203 61.111 0.00 0.00 38.35 4.17
417 441 2.519302 GTGGTGCCTTGCTGGTGT 60.519 61.111 0.00 0.00 38.35 4.16
418 442 2.519063 TGGTGCCTTGCTGGTGTG 60.519 61.111 0.00 0.00 38.35 3.82
419 443 3.297620 GGTGCCTTGCTGGTGTGG 61.298 66.667 0.00 0.00 38.35 4.17
420 444 2.519302 GTGCCTTGCTGGTGTGGT 60.519 61.111 0.00 0.00 38.35 4.16
421 445 2.519063 TGCCTTGCTGGTGTGGTG 60.519 61.111 0.00 0.00 38.35 4.17
422 446 2.203337 GCCTTGCTGGTGTGGTGA 60.203 61.111 0.00 0.00 38.35 4.02
423 447 1.604593 GCCTTGCTGGTGTGGTGAT 60.605 57.895 0.00 0.00 38.35 3.06
424 448 1.589716 GCCTTGCTGGTGTGGTGATC 61.590 60.000 0.00 0.00 38.35 2.92
425 449 1.300971 CCTTGCTGGTGTGGTGATCG 61.301 60.000 0.00 0.00 0.00 3.69
426 450 0.603707 CTTGCTGGTGTGGTGATCGT 60.604 55.000 0.00 0.00 0.00 3.73
427 451 0.884259 TTGCTGGTGTGGTGATCGTG 60.884 55.000 0.00 0.00 0.00 4.35
428 452 1.301716 GCTGGTGTGGTGATCGTGT 60.302 57.895 0.00 0.00 0.00 4.49
429 453 0.037697 GCTGGTGTGGTGATCGTGTA 60.038 55.000 0.00 0.00 0.00 2.90
430 454 1.405526 GCTGGTGTGGTGATCGTGTAT 60.406 52.381 0.00 0.00 0.00 2.29
431 455 2.159156 GCTGGTGTGGTGATCGTGTATA 60.159 50.000 0.00 0.00 0.00 1.47
432 456 3.492656 GCTGGTGTGGTGATCGTGTATAT 60.493 47.826 0.00 0.00 0.00 0.86
433 457 4.261867 GCTGGTGTGGTGATCGTGTATATA 60.262 45.833 0.00 0.00 0.00 0.86
434 458 5.566826 GCTGGTGTGGTGATCGTGTATATAT 60.567 44.000 0.00 0.00 0.00 0.86
595 621 8.252417 TGTGGAGGTTGATAATCATTTGATTTG 58.748 33.333 10.81 0.00 41.64 2.32
600 626 8.095792 AGGTTGATAATCATTTGATTTGTGCAA 58.904 29.630 10.81 7.91 41.64 4.08
657 690 0.906756 AAGAGCAGAGCAGGTAGGCA 60.907 55.000 0.00 0.00 35.83 4.75
698 731 0.456221 TCGCTTTCGATCTCCAGTCC 59.544 55.000 0.00 0.00 40.21 3.85
703 736 1.561643 TTCGATCTCCAGTCCTGCTT 58.438 50.000 0.00 0.00 0.00 3.91
704 737 1.107114 TCGATCTCCAGTCCTGCTTC 58.893 55.000 0.00 0.00 0.00 3.86
712 745 2.367567 TCCAGTCCTGCTTCGTTAAGTT 59.632 45.455 0.00 0.00 34.99 2.66
715 748 3.807622 CAGTCCTGCTTCGTTAAGTTTCA 59.192 43.478 0.00 0.00 34.99 2.69
722 755 4.748102 TGCTTCGTTAAGTTTCAGTCGATT 59.252 37.500 0.00 0.00 34.99 3.34
729 762 9.661187 TCGTTAAGTTTCAGTCGATTCTATATC 57.339 33.333 0.00 0.00 0.00 1.63
735 768 5.864628 TCAGTCGATTCTATATCCGTGAG 57.135 43.478 0.00 0.00 0.00 3.51
737 770 5.408909 TCAGTCGATTCTATATCCGTGAGAC 59.591 44.000 0.00 0.00 0.00 3.36
743 776 5.936686 TTCTATATCCGTGAGACCTTACG 57.063 43.478 7.27 7.27 41.42 3.18
747 780 6.992123 TCTATATCCGTGAGACCTTACGTTTA 59.008 38.462 12.22 5.24 40.36 2.01
748 781 4.789012 ATCCGTGAGACCTTACGTTTAA 57.211 40.909 12.22 0.00 40.36 1.52
749 782 4.582701 TCCGTGAGACCTTACGTTTAAA 57.417 40.909 12.22 0.00 40.36 1.52
751 784 5.163513 TCCGTGAGACCTTACGTTTAAATC 58.836 41.667 12.22 0.00 40.36 2.17
755 788 4.925054 TGAGACCTTACGTTTAAATCCGTG 59.075 41.667 12.58 1.32 37.91 4.94
804 852 6.682423 TTGCATGTTATATCACTTGACTGG 57.318 37.500 7.02 0.00 0.00 4.00
807 879 6.707608 TGCATGTTATATCACTTGACTGGATC 59.292 38.462 7.02 0.00 0.00 3.36
847 919 9.599866 TTCTTGTATGTTATATCACTTGACTGG 57.400 33.333 0.00 0.00 0.00 4.00
848 920 8.758829 TCTTGTATGTTATATCACTTGACTGGT 58.241 33.333 0.00 0.00 0.00 4.00
849 921 9.383519 CTTGTATGTTATATCACTTGACTGGTT 57.616 33.333 0.00 0.00 0.00 3.67
850 922 8.716646 TGTATGTTATATCACTTGACTGGTTG 57.283 34.615 0.00 0.00 0.00 3.77
851 923 8.318412 TGTATGTTATATCACTTGACTGGTTGT 58.682 33.333 0.00 0.00 0.00 3.32
852 924 7.615582 ATGTTATATCACTTGACTGGTTGTG 57.384 36.000 0.00 0.00 0.00 3.33
853 925 5.937540 TGTTATATCACTTGACTGGTTGTGG 59.062 40.000 0.00 0.00 0.00 4.17
854 926 4.640771 ATATCACTTGACTGGTTGTGGT 57.359 40.909 0.00 0.00 0.00 4.16
855 927 2.799126 TCACTTGACTGGTTGTGGTT 57.201 45.000 0.00 0.00 0.00 3.67
856 928 3.916359 TCACTTGACTGGTTGTGGTTA 57.084 42.857 0.00 0.00 0.00 2.85
857 929 4.223556 TCACTTGACTGGTTGTGGTTAA 57.776 40.909 0.00 0.00 0.00 2.01
858 930 4.590918 TCACTTGACTGGTTGTGGTTAAA 58.409 39.130 0.00 0.00 0.00 1.52
859 931 5.197451 TCACTTGACTGGTTGTGGTTAAAT 58.803 37.500 0.00 0.00 0.00 1.40
860 932 5.298276 TCACTTGACTGGTTGTGGTTAAATC 59.702 40.000 0.00 0.00 0.00 2.17
861 933 4.583073 ACTTGACTGGTTGTGGTTAAATCC 59.417 41.667 0.00 0.00 0.00 3.01
864 936 3.143728 ACTGGTTGTGGTTAAATCCGAC 58.856 45.455 0.00 0.00 0.00 4.79
893 965 2.962859 AGCCACACCCTTCAATCTTTT 58.037 42.857 0.00 0.00 0.00 2.27
979 1051 0.684153 GAGGCTGAGCTGAGAGGTCT 60.684 60.000 3.62 0.00 42.83 3.85
1162 1255 5.281245 CCCCCTCTAAAGTTCTTCCATTTCT 60.281 44.000 0.00 0.00 0.00 2.52
1163 1256 6.249192 CCCCTCTAAAGTTCTTCCATTTCTT 58.751 40.000 0.00 0.00 0.00 2.52
1165 1258 7.233553 CCCCTCTAAAGTTCTTCCATTTCTTTT 59.766 37.037 0.00 0.00 32.01 2.27
1166 1259 8.300286 CCCTCTAAAGTTCTTCCATTTCTTTTC 58.700 37.037 0.00 0.00 32.01 2.29
1173 1266 6.042093 AGTTCTTCCATTTCTTTTCCCCTTTC 59.958 38.462 0.00 0.00 0.00 2.62
1231 1783 2.820197 CCCTTTTGTCTGCTTTACCCTC 59.180 50.000 0.00 0.00 0.00 4.30
1251 1803 5.178438 CCCTCTCTCTTTTTGTTCTTTCTCG 59.822 44.000 0.00 0.00 0.00 4.04
1258 1810 4.468095 TTTTGTTCTTTCTCGTAGCTGC 57.532 40.909 0.00 0.00 0.00 5.25
1279 1831 2.356382 CGTCCTTGGTCTAGCACTCTAG 59.644 54.545 0.00 0.00 42.87 2.43
1280 1832 3.622630 GTCCTTGGTCTAGCACTCTAGA 58.377 50.000 0.00 0.00 46.65 2.43
1349 1901 0.966179 CCATCCATCCGTCCGATGTA 59.034 55.000 1.31 0.00 46.10 2.29
1365 1917 4.338400 CCGATGTACTACTCCATGAACAGA 59.662 45.833 0.00 0.00 0.00 3.41
1368 1920 5.386958 TGTACTACTCCATGAACAGACAC 57.613 43.478 0.00 0.00 0.00 3.67
1395 1947 3.007940 CCCTGTACTTCATGAACAGTCCA 59.992 47.826 19.70 8.44 39.17 4.02
1401 1953 7.424803 TGTACTTCATGAACAGTCCATTTTTG 58.575 34.615 3.38 0.00 0.00 2.44
1404 1956 6.322201 ACTTCATGAACAGTCCATTTTTGTCT 59.678 34.615 3.38 0.00 0.00 3.41
1407 1959 6.320926 TCATGAACAGTCCATTTTTGTCTGAA 59.679 34.615 0.00 0.00 0.00 3.02
1428 1981 2.478872 TTTGTCCCCAAAATCCACCA 57.521 45.000 0.00 0.00 37.62 4.17
1582 2135 1.421646 AGGAAGAAGAAGGTGGTGGTG 59.578 52.381 0.00 0.00 0.00 4.17
1798 2360 1.901591 ACTGATGCTCTTGTGGTTGG 58.098 50.000 0.00 0.00 0.00 3.77
1833 2396 0.250295 TGGAGTAACACAGTGGCTGC 60.250 55.000 5.31 6.11 34.37 5.25
1840 2407 1.079266 CACAGTGGCTGCCTCTCTC 60.079 63.158 19.67 5.47 34.37 3.20
1842 2409 3.768922 AGTGGCTGCCTCTCTCGC 61.769 66.667 21.03 0.00 0.00 5.03
1947 2516 1.741770 CCGCTCTGCTGTTGGTACC 60.742 63.158 4.43 4.43 0.00 3.34
2091 2668 0.318360 CCTGTGCAGCATTGTGTGTG 60.318 55.000 0.00 0.00 0.00 3.82
2147 2728 7.490725 CAGTCCTGAGATGTAAGTTATTCTGTG 59.509 40.741 3.74 0.00 0.00 3.66
2162 2747 4.466567 TTCTGTGTAATGTTCTGCAACG 57.533 40.909 0.00 0.00 34.95 4.10
2550 3143 8.947115 GCACTAAATTACCATATAATGAGGGTC 58.053 37.037 0.00 0.00 34.88 4.46
2576 3169 4.141413 ACAATCCTGCAGTAATAGCCATGA 60.141 41.667 13.81 0.00 0.00 3.07
2584 3177 5.528690 TGCAGTAATAGCCATGATTCACTTC 59.471 40.000 0.00 0.00 0.00 3.01
2591 3184 2.429610 GCCATGATTCACTTCCATTGCT 59.570 45.455 0.00 0.00 0.00 3.91
2592 3185 3.633525 GCCATGATTCACTTCCATTGCTA 59.366 43.478 0.00 0.00 0.00 3.49
2593 3186 4.098349 GCCATGATTCACTTCCATTGCTAA 59.902 41.667 0.00 0.00 0.00 3.09
2595 3188 5.591472 CCATGATTCACTTCCATTGCTAAGA 59.409 40.000 0.00 0.00 0.00 2.10
2606 3217 6.252599 TCCATTGCTAAGAATATGTCAGGT 57.747 37.500 0.00 0.00 0.00 4.00
2636 3247 6.954944 TCGCTAAGAATATGTTTTGGTATGC 58.045 36.000 0.00 0.00 0.00 3.14
2682 3293 4.913335 TGTATCGGTATGTCAGTCTTCC 57.087 45.455 0.00 0.00 0.00 3.46
2706 3317 5.468540 TCCCAGATAATGAGGATTGTACG 57.531 43.478 0.00 0.00 0.00 3.67
2720 3413 0.036765 TGTACGGCTGGTTCACATCC 60.037 55.000 0.00 0.00 31.92 3.51
2729 3422 1.271001 TGGTTCACATCCAGCAGACTG 60.271 52.381 0.00 0.00 44.05 3.51
2818 3514 9.403110 CTCTCAGGAAAAAGTGAATAACAATTG 57.597 33.333 3.24 3.24 36.89 2.32
2890 3586 7.392766 AAATATATCCCAGTCACTGATTCCA 57.607 36.000 6.30 0.00 32.44 3.53
2891 3587 4.970860 ATATCCCAGTCACTGATTCCAG 57.029 45.455 6.30 0.00 45.76 3.86
2892 3588 1.279496 TCCCAGTCACTGATTCCAGG 58.721 55.000 6.30 0.00 44.60 4.45
2893 3589 0.254178 CCCAGTCACTGATTCCAGGG 59.746 60.000 6.30 0.00 45.16 4.45
2894 3590 0.987294 CCAGTCACTGATTCCAGGGT 59.013 55.000 6.30 0.00 44.16 4.34
2897 3593 3.099905 CAGTCACTGATTCCAGGGTAGA 58.900 50.000 0.00 0.00 44.16 2.59
2898 3594 3.708631 CAGTCACTGATTCCAGGGTAGAT 59.291 47.826 0.00 0.00 44.16 1.98
2940 3645 1.255882 CCCAAGCAATGCCAGTGTAA 58.744 50.000 0.00 0.00 0.00 2.41
3005 3710 2.417586 CGGTTTCTTCCGTGTTATTCCC 59.582 50.000 0.00 0.00 44.77 3.97
3111 3817 5.522097 GGAATTGGACGTTTTGTTGATTTGT 59.478 36.000 0.00 0.00 0.00 2.83
3116 3822 5.106118 TGGACGTTTTGTTGATTTGTCAAGA 60.106 36.000 0.00 0.00 0.00 3.02
3144 3850 6.865834 AAAATTGCCCACTGGTTCAATATA 57.134 33.333 11.22 0.00 0.00 0.86
3163 3869 7.339212 TCAATATACATGCCTTTGTTTGTAGCT 59.661 33.333 0.00 0.00 0.00 3.32
3177 3883 6.398918 TGTTTGTAGCTTCAGTAGATCTTCC 58.601 40.000 0.00 0.00 0.00 3.46
3379 4085 1.134175 GAAACATTGGTGCCGTATGGG 59.866 52.381 2.41 0.00 39.58 4.00
3397 4103 0.610232 GGATGGCTGTTTGGTCTGCT 60.610 55.000 0.00 0.00 33.78 4.24
3400 4106 2.647297 GCTGTTTGGTCTGCTGGC 59.353 61.111 0.00 0.00 0.00 4.85
3435 4141 4.115516 CCCGTCATTACAGACTTCATGAG 58.884 47.826 0.00 0.00 36.38 2.90
3471 4177 8.733857 CAGGTTGTTAAATCTGAATCAAAGTC 57.266 34.615 0.00 0.00 45.92 3.01
3488 4194 1.134226 GTCGTGTGTTCAGGTTACCG 58.866 55.000 0.00 0.00 0.00 4.02
3846 4552 3.864921 GCGTGTATGTTCCAGTTTCCTCT 60.865 47.826 0.00 0.00 0.00 3.69
3849 4555 4.452455 GTGTATGTTCCAGTTTCCTCTGTG 59.548 45.833 0.00 0.00 34.02 3.66
3927 4633 2.863704 GCAAAGTCCAGTGCATGTTTCC 60.864 50.000 0.00 0.00 40.58 3.13
3934 4640 1.004044 CAGTGCATGTTTCCTCCTCCT 59.996 52.381 0.00 0.00 0.00 3.69
3957 4663 4.658071 TCTGACTCGTTTGCTTTTGTTTC 58.342 39.130 0.00 0.00 0.00 2.78
4104 4810 8.518430 TGTATATGAAAAGTATGCACATGGTT 57.482 30.769 0.00 0.00 0.00 3.67
4253 4959 4.187694 GCTCAGGTTGTCTCTATTTCCAG 58.812 47.826 0.00 0.00 0.00 3.86
4357 5063 6.319658 TCCCTCATTGTTTCTCTGATATTTGC 59.680 38.462 0.00 0.00 0.00 3.68
4592 5298 0.396974 ACTTTGCACAGCTTTGGGGA 60.397 50.000 1.35 0.00 0.00 4.81
5170 5892 1.655372 TGACTGACCCATCACCATCA 58.345 50.000 0.00 0.00 0.00 3.07
5171 5893 1.278985 TGACTGACCCATCACCATCAC 59.721 52.381 0.00 0.00 0.00 3.06
5172 5894 1.556911 GACTGACCCATCACCATCACT 59.443 52.381 0.00 0.00 0.00 3.41
5173 5895 2.766263 GACTGACCCATCACCATCACTA 59.234 50.000 0.00 0.00 0.00 2.74
5174 5896 3.387962 ACTGACCCATCACCATCACTAT 58.612 45.455 0.00 0.00 0.00 2.12
5175 5897 3.389329 ACTGACCCATCACCATCACTATC 59.611 47.826 0.00 0.00 0.00 2.08
5231 5973 5.367060 ACCACCTTATCCACCTTATCTTCTC 59.633 44.000 0.00 0.00 0.00 2.87
5250 5992 1.080093 CCTGAGTCGTTTAGCCGCA 60.080 57.895 0.00 0.00 0.00 5.69
5251 5993 0.669318 CCTGAGTCGTTTAGCCGCAA 60.669 55.000 0.00 0.00 0.00 4.85
5252 5994 1.144969 CTGAGTCGTTTAGCCGCAAA 58.855 50.000 0.00 0.00 0.00 3.68
5263 6005 1.896220 AGCCGCAAAAACTGAGATCA 58.104 45.000 0.00 0.00 0.00 2.92
5280 6022 3.139584 AGATCATCCCTTTCCATGCATGA 59.860 43.478 28.31 11.26 0.00 3.07
5383 6125 3.299190 GCCGGATCTAGGCGCTCT 61.299 66.667 5.05 5.38 45.58 4.09
5483 6231 4.821805 TGTTGATTGTTCCTTTCTGTCCTC 59.178 41.667 0.00 0.00 0.00 3.71
5507 6255 0.877649 CGGAGCCATCATCCTTCGTG 60.878 60.000 0.00 0.00 34.45 4.35
5584 6340 1.291132 GAATCTGAAGCGTACCTGGC 58.709 55.000 0.00 0.00 0.00 4.85
5615 6371 1.961277 CCGAGTGCCCACAGTTCAC 60.961 63.158 0.82 0.00 0.00 3.18
5616 6372 2.310233 CGAGTGCCCACAGTTCACG 61.310 63.158 0.82 0.00 35.97 4.35
5617 6373 2.591715 AGTGCCCACAGTTCACGC 60.592 61.111 0.82 0.00 35.97 5.34
5622 6378 3.334751 CCACAGTTCACGCGCGAA 61.335 61.111 39.36 19.42 0.00 4.70
5623 6379 2.623718 CACAGTTCACGCGCGAAA 59.376 55.556 39.36 26.06 0.00 3.46
5624 6380 1.717728 CACAGTTCACGCGCGAAAC 60.718 57.895 39.36 34.03 0.00 2.78
5625 6381 1.881252 ACAGTTCACGCGCGAAACT 60.881 52.632 39.36 35.49 0.00 2.66
5626 6382 1.437089 CAGTTCACGCGCGAAACTG 60.437 57.895 39.75 39.75 0.00 3.16
5627 6383 2.791331 GTTCACGCGCGAAACTGC 60.791 61.111 39.36 16.70 0.00 4.40
5635 6391 2.357034 GCGAAACTGCGGTCAGGA 60.357 61.111 0.00 0.00 44.54 3.86
5636 6392 2.668280 GCGAAACTGCGGTCAGGAC 61.668 63.158 0.00 0.00 44.54 3.85
5637 6393 1.300620 CGAAACTGCGGTCAGGACA 60.301 57.895 0.00 0.00 44.54 4.02
5638 6394 0.878523 CGAAACTGCGGTCAGGACAA 60.879 55.000 0.00 0.00 44.54 3.18
5639 6395 1.305201 GAAACTGCGGTCAGGACAAA 58.695 50.000 0.00 0.00 44.54 2.83
5640 6396 1.880027 GAAACTGCGGTCAGGACAAAT 59.120 47.619 0.00 0.00 44.54 2.32
5641 6397 1.238439 AACTGCGGTCAGGACAAATG 58.762 50.000 0.00 0.00 44.54 2.32
5642 6398 0.606401 ACTGCGGTCAGGACAAATGG 60.606 55.000 0.00 0.00 44.54 3.16
5643 6399 0.606401 CTGCGGTCAGGACAAATGGT 60.606 55.000 1.41 0.00 36.68 3.55
5644 6400 0.179004 TGCGGTCAGGACAAATGGTT 60.179 50.000 1.41 0.00 0.00 3.67
5645 6401 0.958822 GCGGTCAGGACAAATGGTTT 59.041 50.000 1.41 0.00 0.00 3.27
5646 6402 1.335872 GCGGTCAGGACAAATGGTTTG 60.336 52.381 1.41 1.15 45.95 2.93
5736 6493 1.321474 TTTTGAACTGGCTCTGCTGG 58.679 50.000 0.00 0.00 0.00 4.85
5742 6499 0.475906 ACTGGCTCTGCTGGTTTTCT 59.524 50.000 0.00 0.00 0.00 2.52
5772 6529 8.522830 CATGTTTATTTCATTGTTAGTGGACCT 58.477 33.333 0.00 0.00 0.00 3.85
5839 6652 6.908870 TTCTCTCCATTAACATCGTTGATG 57.091 37.500 5.29 5.29 44.71 3.07
5854 6670 1.643880 TGATGTGTATGCAGCGTCAG 58.356 50.000 0.00 0.00 0.00 3.51
5855 6671 0.302890 GATGTGTATGCAGCGTCAGC 59.697 55.000 0.00 0.00 45.58 4.26
5894 6710 5.169295 GGTAACAGTAGTCAGTGATGGTTC 58.831 45.833 0.00 0.00 0.00 3.62
5921 6737 3.250744 GGAAGAAAACCGCCAAATAAGC 58.749 45.455 0.00 0.00 0.00 3.09
5923 6739 3.297830 AGAAAACCGCCAAATAAGCAC 57.702 42.857 0.00 0.00 0.00 4.40
5973 6790 3.730061 GCAGCAGCAGCAGTAATAAGTTG 60.730 47.826 4.63 0.00 45.49 3.16
6012 6829 0.752658 CACATGGCCATCTCTACGGA 59.247 55.000 17.61 0.00 0.00 4.69
6016 6833 4.402474 CACATGGCCATCTCTACGGATATA 59.598 45.833 17.61 0.00 0.00 0.86
6048 6865 0.179181 CGTGCTCACATGGTGATTGC 60.179 55.000 0.00 1.98 41.94 3.56
6049 6866 1.171308 GTGCTCACATGGTGATTGCT 58.829 50.000 10.59 0.00 41.94 3.91
6052 6869 1.460504 CTCACATGGTGATTGCTGCT 58.539 50.000 0.00 0.00 41.94 4.24
6117 6934 0.036105 TACGAGTAGACGGTGGCTCA 60.036 55.000 0.00 0.00 37.61 4.26
6123 6940 1.132643 GTAGACGGTGGCTCAGTACAG 59.867 57.143 0.00 0.00 0.00 2.74
6142 6959 1.067516 AGCGTACTTTGTACCACACGT 59.932 47.619 2.76 0.00 0.00 4.49
6143 6960 2.293122 AGCGTACTTTGTACCACACGTA 59.707 45.455 0.00 0.00 0.00 3.57
6147 6964 1.270465 ACTTTGTACCACACGTAGGGC 60.270 52.381 10.58 4.23 0.00 5.19
6187 7016 4.753610 TCCATCTCCTACGTTAGATGTACG 59.246 45.833 22.90 13.96 45.01 3.67
6192 7021 1.000938 CTACGTTAGATGTACGGGCCC 60.001 57.143 13.57 13.57 42.99 5.80
6221 7054 1.270907 AGAACCTACCACTGCCAGAG 58.729 55.000 0.00 0.00 0.00 3.35
6224 7057 0.115349 ACCTACCACTGCCAGAGAGT 59.885 55.000 0.00 0.00 0.00 3.24
6255 7088 3.977134 ACAACCAATATTTGCCATGCA 57.023 38.095 0.00 0.00 36.47 3.96
6295 7131 4.446371 ACAATGTTTGAATTTTTGCCCGA 58.554 34.783 0.00 0.00 0.00 5.14
6296 7132 4.878397 ACAATGTTTGAATTTTTGCCCGAA 59.122 33.333 0.00 0.00 0.00 4.30
6297 7133 5.530543 ACAATGTTTGAATTTTTGCCCGAAT 59.469 32.000 0.00 0.00 0.00 3.34
6298 7134 6.039159 ACAATGTTTGAATTTTTGCCCGAATT 59.961 30.769 0.00 0.00 0.00 2.17
6299 7135 5.665381 TGTTTGAATTTTTGCCCGAATTC 57.335 34.783 0.00 0.00 40.79 2.17
6300 7136 5.118990 TGTTTGAATTTTTGCCCGAATTCA 58.881 33.333 6.22 11.92 45.47 2.57
6303 7139 4.954875 TGAATTTTTGCCCGAATTCAAGT 58.045 34.783 6.22 0.00 44.68 3.16
6304 7140 4.749099 TGAATTTTTGCCCGAATTCAAGTG 59.251 37.500 6.22 0.00 44.68 3.16
6305 7141 3.810310 TTTTTGCCCGAATTCAAGTGT 57.190 38.095 6.22 0.00 0.00 3.55
6306 7142 3.363341 TTTTGCCCGAATTCAAGTGTC 57.637 42.857 6.22 0.00 0.00 3.67
6307 7143 1.974265 TTGCCCGAATTCAAGTGTCA 58.026 45.000 6.22 0.00 0.00 3.58
6308 7144 1.234821 TGCCCGAATTCAAGTGTCAC 58.765 50.000 6.22 0.00 0.00 3.67
6309 7145 1.202758 TGCCCGAATTCAAGTGTCACT 60.203 47.619 6.22 0.00 0.00 3.41
6310 7146 1.197721 GCCCGAATTCAAGTGTCACTG 59.802 52.381 6.18 1.30 0.00 3.66
6311 7147 1.806542 CCCGAATTCAAGTGTCACTGG 59.193 52.381 6.18 3.12 0.00 4.00
6312 7148 1.806542 CCGAATTCAAGTGTCACTGGG 59.193 52.381 6.18 2.35 0.00 4.45
6313 7149 2.494059 CGAATTCAAGTGTCACTGGGT 58.506 47.619 6.18 0.00 0.00 4.51
6314 7150 2.878406 CGAATTCAAGTGTCACTGGGTT 59.122 45.455 6.18 2.59 0.00 4.11
6315 7151 3.315191 CGAATTCAAGTGTCACTGGGTTT 59.685 43.478 6.18 0.98 0.00 3.27
6316 7152 4.202010 CGAATTCAAGTGTCACTGGGTTTT 60.202 41.667 6.18 0.00 0.00 2.43
6317 7153 5.660460 GAATTCAAGTGTCACTGGGTTTTT 58.340 37.500 6.18 0.00 0.00 1.94
6318 7154 4.448537 TTCAAGTGTCACTGGGTTTTTG 57.551 40.909 6.18 0.00 0.00 2.44
6319 7155 2.757868 TCAAGTGTCACTGGGTTTTTGG 59.242 45.455 6.18 0.00 0.00 3.28
6320 7156 1.111277 AGTGTCACTGGGTTTTTGGC 58.889 50.000 4.21 0.00 0.00 4.52
6321 7157 0.104120 GTGTCACTGGGTTTTTGGCC 59.896 55.000 0.00 0.00 0.00 5.36
6322 7158 1.362355 GTCACTGGGTTTTTGGCCG 59.638 57.895 0.00 0.00 0.00 6.13
6376 7212 3.940852 CCAAATTTCTAAAATGCTGGGCC 59.059 43.478 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.000127 TGCCTAAAAGGGAGTAAACTCTTAAAA 59.000 33.333 9.84 0.00 42.48 1.52
43 44 5.730550 ACCACATACTGTTGTACTACATGG 58.269 41.667 19.13 19.13 0.00 3.66
48 49 6.818233 TGTTGAACCACATACTGTTGTACTA 58.182 36.000 0.00 0.00 0.00 1.82
55 56 4.431416 TTCCTGTTGAACCACATACTGT 57.569 40.909 0.00 0.00 0.00 3.55
57 58 5.241403 TCATTCCTGTTGAACCACATACT 57.759 39.130 0.00 0.00 35.31 2.12
125 139 5.046529 GCAAGTCGACATCTGACAATAGAT 58.953 41.667 19.50 0.00 38.83 1.98
198 212 3.596214 ACTTATTTACAGTGACAGCCCG 58.404 45.455 0.00 0.00 0.00 6.13
202 216 6.785488 TGCTGAACTTATTTACAGTGACAG 57.215 37.500 0.00 0.00 34.92 3.51
225 239 1.405526 CGTACACAAGTGGCAGGCTAT 60.406 52.381 5.08 0.00 34.19 2.97
244 258 6.899771 CGTGGTCAGATGTTTATGAAAATACG 59.100 38.462 0.00 0.00 0.00 3.06
245 259 7.186804 CCGTGGTCAGATGTTTATGAAAATAC 58.813 38.462 0.00 0.00 0.00 1.89
246 260 6.183360 GCCGTGGTCAGATGTTTATGAAAATA 60.183 38.462 0.00 0.00 0.00 1.40
247 261 5.393027 GCCGTGGTCAGATGTTTATGAAAAT 60.393 40.000 0.00 0.00 0.00 1.82
248 262 4.083003 GCCGTGGTCAGATGTTTATGAAAA 60.083 41.667 0.00 0.00 0.00 2.29
285 299 0.692476 TACCACTTGATGCTGCCACT 59.308 50.000 0.00 0.00 0.00 4.00
324 339 5.567138 AAAGTAACATGCTTAGCACATCC 57.433 39.130 9.82 0.00 43.04 3.51
325 340 5.287035 GCAAAAGTAACATGCTTAGCACATC 59.713 40.000 9.82 0.00 43.04 3.06
326 341 5.163513 GCAAAAGTAACATGCTTAGCACAT 58.836 37.500 9.82 0.92 43.04 3.21
327 342 4.545610 GCAAAAGTAACATGCTTAGCACA 58.454 39.130 9.82 0.00 43.04 4.57
344 367 6.208402 TGACCTGACATAATAAGCAAGCAAAA 59.792 34.615 0.00 0.00 0.00 2.44
374 397 9.775854 CTGATGATGGTTAATTAGATCTTGAGT 57.224 33.333 0.00 0.00 0.00 3.41
413 437 6.020971 TCATATATACACGATCACCACACC 57.979 41.667 0.00 0.00 0.00 4.16
414 438 9.634163 TTATTCATATATACACGATCACCACAC 57.366 33.333 0.00 0.00 0.00 3.82
585 609 3.429543 CCGGTCTTTGCACAAATCAAATG 59.570 43.478 0.00 0.00 33.54 2.32
595 621 1.237285 ATGCTCACCGGTCTTTGCAC 61.237 55.000 18.40 0.95 33.16 4.57
600 626 1.675641 GGCAATGCTCACCGGTCTT 60.676 57.895 2.59 0.00 0.00 3.01
698 731 3.734231 TCGACTGAAACTTAACGAAGCAG 59.266 43.478 0.00 0.00 35.97 4.24
703 736 9.661187 GATATAGAATCGACTGAAACTTAACGA 57.339 33.333 0.00 0.00 0.00 3.85
704 737 8.903723 GGATATAGAATCGACTGAAACTTAACG 58.096 37.037 0.00 0.00 0.00 3.18
712 745 5.995897 TCTCACGGATATAGAATCGACTGAA 59.004 40.000 0.00 0.00 0.00 3.02
715 748 4.696402 GGTCTCACGGATATAGAATCGACT 59.304 45.833 0.00 0.00 0.00 4.18
722 755 4.965814 ACGTAAGGTCTCACGGATATAGA 58.034 43.478 0.00 0.00 42.35 1.98
729 762 4.328169 GGATTTAAACGTAAGGTCTCACGG 59.672 45.833 0.00 0.00 42.35 4.94
735 768 3.432933 TGCACGGATTTAAACGTAAGGTC 59.567 43.478 3.84 0.00 42.04 3.85
737 770 4.407496 TTGCACGGATTTAAACGTAAGG 57.593 40.909 3.84 0.00 42.04 2.69
779 812 7.392953 TCCAGTCAAGTGATATAACATGCAAAA 59.607 33.333 0.00 0.00 0.00 2.44
783 816 6.933521 AGATCCAGTCAAGTGATATAACATGC 59.066 38.462 0.00 0.00 0.00 4.06
784 817 8.899427 AAGATCCAGTCAAGTGATATAACATG 57.101 34.615 0.00 0.00 0.00 3.21
785 818 9.911788 AAAAGATCCAGTCAAGTGATATAACAT 57.088 29.630 0.00 0.00 0.00 2.71
823 895 8.948631 ACCAGTCAAGTGATATAACATACAAG 57.051 34.615 0.00 0.00 0.00 3.16
827 899 7.768582 CCACAACCAGTCAAGTGATATAACATA 59.231 37.037 0.00 0.00 33.99 2.29
834 906 4.431416 AACCACAACCAGTCAAGTGATA 57.569 40.909 0.00 0.00 33.99 2.15
837 909 4.974368 TTTAACCACAACCAGTCAAGTG 57.026 40.909 0.00 0.00 0.00 3.16
838 910 4.583073 GGATTTAACCACAACCAGTCAAGT 59.417 41.667 0.00 0.00 0.00 3.16
840 912 3.566322 CGGATTTAACCACAACCAGTCAA 59.434 43.478 0.00 0.00 0.00 3.18
841 913 3.142951 CGGATTTAACCACAACCAGTCA 58.857 45.455 0.00 0.00 0.00 3.41
842 914 3.187842 GTCGGATTTAACCACAACCAGTC 59.812 47.826 0.00 0.00 0.00 3.51
843 915 3.143728 GTCGGATTTAACCACAACCAGT 58.856 45.455 0.00 0.00 0.00 4.00
844 916 3.188460 CAGTCGGATTTAACCACAACCAG 59.812 47.826 0.00 0.00 0.00 4.00
845 917 3.142951 CAGTCGGATTTAACCACAACCA 58.857 45.455 0.00 0.00 0.00 3.67
846 918 3.404899 TCAGTCGGATTTAACCACAACC 58.595 45.455 0.00 0.00 0.00 3.77
847 919 4.151867 GTCTCAGTCGGATTTAACCACAAC 59.848 45.833 0.00 0.00 0.00 3.32
848 920 4.312443 GTCTCAGTCGGATTTAACCACAA 58.688 43.478 0.00 0.00 0.00 3.33
849 921 3.306502 GGTCTCAGTCGGATTTAACCACA 60.307 47.826 0.00 0.00 0.00 4.17
850 922 3.056035 AGGTCTCAGTCGGATTTAACCAC 60.056 47.826 0.00 0.00 0.00 4.16
851 923 3.170717 AGGTCTCAGTCGGATTTAACCA 58.829 45.455 0.00 0.00 0.00 3.67
852 924 3.889520 AGGTCTCAGTCGGATTTAACC 57.110 47.619 0.00 0.00 0.00 2.85
853 925 4.361420 GCTAGGTCTCAGTCGGATTTAAC 58.639 47.826 0.00 0.00 0.00 2.01
854 926 3.383825 GGCTAGGTCTCAGTCGGATTTAA 59.616 47.826 0.00 0.00 0.00 1.52
855 927 2.957006 GGCTAGGTCTCAGTCGGATTTA 59.043 50.000 0.00 0.00 0.00 1.40
856 928 1.757699 GGCTAGGTCTCAGTCGGATTT 59.242 52.381 0.00 0.00 0.00 2.17
857 929 1.342076 TGGCTAGGTCTCAGTCGGATT 60.342 52.381 0.00 0.00 0.00 3.01
858 930 0.259065 TGGCTAGGTCTCAGTCGGAT 59.741 55.000 0.00 0.00 0.00 4.18
859 931 0.680280 GTGGCTAGGTCTCAGTCGGA 60.680 60.000 0.00 0.00 0.00 4.55
860 932 0.965866 TGTGGCTAGGTCTCAGTCGG 60.966 60.000 0.00 0.00 0.00 4.79
861 933 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
864 936 0.616111 AGGGTGTGGCTAGGTCTCAG 60.616 60.000 0.00 0.00 0.00 3.35
917 989 1.069358 GATCAGGCCAGGTACTAGTGC 59.931 57.143 5.01 3.50 36.02 4.40
970 1042 3.005539 GCTGCCCCAGACCTCTCA 61.006 66.667 0.00 0.00 32.44 3.27
1134 1214 3.282885 GAAGAACTTTAGAGGGGGCATG 58.717 50.000 0.00 0.00 0.00 4.06
1135 1215 2.242452 GGAAGAACTTTAGAGGGGGCAT 59.758 50.000 0.00 0.00 0.00 4.40
1136 1216 1.633945 GGAAGAACTTTAGAGGGGGCA 59.366 52.381 0.00 0.00 0.00 5.36
1138 1218 4.592997 AATGGAAGAACTTTAGAGGGGG 57.407 45.455 0.00 0.00 0.00 5.40
1143 1223 7.232737 GGGGAAAAGAAATGGAAGAACTTTAGA 59.767 37.037 0.00 0.00 31.86 2.10
1162 1255 0.382515 CACGCAACGAAAGGGGAAAA 59.617 50.000 0.00 0.00 0.00 2.29
1163 1256 0.464013 TCACGCAACGAAAGGGGAAA 60.464 50.000 0.00 0.00 0.00 3.13
1165 1258 0.953471 CATCACGCAACGAAAGGGGA 60.953 55.000 0.00 0.00 0.00 4.81
1166 1259 0.953471 TCATCACGCAACGAAAGGGG 60.953 55.000 0.00 0.00 0.00 4.79
1173 1266 1.004610 GATCACCATCATCACGCAACG 60.005 52.381 0.00 0.00 0.00 4.10
1204 1756 3.737172 CAGACAAAAGGGGCGGCG 61.737 66.667 0.51 0.51 0.00 6.46
1231 1783 6.422400 AGCTACGAGAAAGAACAAAAAGAGAG 59.578 38.462 0.00 0.00 0.00 3.20
1251 1803 0.815734 TAGACCAAGGACGCAGCTAC 59.184 55.000 0.00 0.00 0.00 3.58
1258 1810 1.178276 AGAGTGCTAGACCAAGGACG 58.822 55.000 0.00 0.00 42.17 4.79
1279 1831 7.659390 CCCTGTTGACCAAGATTATCTAGATTC 59.341 40.741 11.25 3.30 0.00 2.52
1280 1832 7.348274 TCCCTGTTGACCAAGATTATCTAGATT 59.652 37.037 11.25 0.00 0.00 2.40
1284 1836 5.366768 CCTCCCTGTTGACCAAGATTATCTA 59.633 44.000 0.00 0.00 0.00 1.98
1295 1847 0.693049 ACATCACCTCCCTGTTGACC 59.307 55.000 0.00 0.00 0.00 4.02
1340 1892 4.097437 TGTTCATGGAGTAGTACATCGGAC 59.903 45.833 2.52 0.00 0.00 4.79
1349 1901 3.239449 TGGTGTCTGTTCATGGAGTAGT 58.761 45.455 0.00 0.00 0.00 2.73
1365 1917 2.038863 TGAAGTACAGGGGATGGTGT 57.961 50.000 0.00 0.00 0.00 4.16
1368 1920 3.054434 TGTTCATGAAGTACAGGGGATGG 60.054 47.826 8.80 0.00 0.00 3.51
1395 1947 6.245890 TGGGGACAAAATTCAGACAAAAAT 57.754 33.333 0.00 0.00 37.44 1.82
1427 1980 1.469940 CCTCGATCCGGAAGAACAGTG 60.470 57.143 9.01 0.00 0.00 3.66
1428 1981 0.818296 CCTCGATCCGGAAGAACAGT 59.182 55.000 9.01 0.00 0.00 3.55
1798 2360 2.005451 CTCCACAGCTCTGCATAACAC 58.995 52.381 0.00 0.00 0.00 3.32
1866 2435 3.977427 TGCTTCATAATACGCGACATCT 58.023 40.909 15.93 0.00 0.00 2.90
1899 2468 2.194271 GCTTTCTTCGTCGGATCGATT 58.806 47.619 0.00 0.00 38.42 3.34
1947 2516 1.755959 TCGCCATTCCCATCCAAATTG 59.244 47.619 0.00 0.00 0.00 2.32
2091 2668 5.986135 TGAGAGAAAGCAGAACAGTAAAGAC 59.014 40.000 0.00 0.00 0.00 3.01
2147 2728 4.447724 TCTGAAGACGTTGCAGAACATTAC 59.552 41.667 11.83 0.00 35.87 1.89
2525 3110 9.151471 CGACCCTCATTATATGGTAATTTAGTG 57.849 37.037 0.00 0.00 0.00 2.74
2550 3143 3.248602 GGCTATTACTGCAGGATTGTTCG 59.751 47.826 19.93 0.00 0.00 3.95
2576 3169 8.757982 ACATATTCTTAGCAATGGAAGTGAAT 57.242 30.769 0.00 0.00 30.28 2.57
2584 3177 6.769822 AGAACCTGACATATTCTTAGCAATGG 59.230 38.462 0.00 0.00 28.03 3.16
2591 3184 6.040955 AGCGATGAGAACCTGACATATTCTTA 59.959 38.462 3.55 0.84 32.83 2.10
2592 3185 5.053145 GCGATGAGAACCTGACATATTCTT 58.947 41.667 3.55 0.00 32.83 2.52
2593 3186 4.343526 AGCGATGAGAACCTGACATATTCT 59.656 41.667 1.88 1.88 35.39 2.40
2595 3188 4.679373 AGCGATGAGAACCTGACATATT 57.321 40.909 0.00 0.00 0.00 1.28
2606 3217 7.552687 ACCAAAACATATTCTTAGCGATGAGAA 59.447 33.333 10.46 10.46 36.43 2.87
2636 3247 2.826674 TCCCCTGGAGGCTTTTTATG 57.173 50.000 0.00 0.00 0.00 1.90
2682 3293 5.928839 CGTACAATCCTCATTATCTGGGAAG 59.071 44.000 0.00 0.00 30.85 3.46
2720 3413 1.199327 CATGCAACTTCCAGTCTGCTG 59.801 52.381 0.00 0.00 42.22 4.41
2890 3586 5.036916 TGGTTTTGGTCTATCATCTACCCT 58.963 41.667 0.00 0.00 31.97 4.34
2891 3587 5.123936 GTGGTTTTGGTCTATCATCTACCC 58.876 45.833 0.00 0.00 31.97 3.69
2892 3588 5.104485 AGGTGGTTTTGGTCTATCATCTACC 60.104 44.000 0.00 0.00 0.00 3.18
2893 3589 5.990668 AGGTGGTTTTGGTCTATCATCTAC 58.009 41.667 0.00 0.00 0.00 2.59
2894 3590 6.636454 AAGGTGGTTTTGGTCTATCATCTA 57.364 37.500 0.00 0.00 0.00 1.98
2897 3593 5.506708 GGTAAGGTGGTTTTGGTCTATCAT 58.493 41.667 0.00 0.00 0.00 2.45
2898 3594 4.263594 GGGTAAGGTGGTTTTGGTCTATCA 60.264 45.833 0.00 0.00 0.00 2.15
2959 3664 6.419710 GCCACAATCCAAAAACTACTAACAAC 59.580 38.462 0.00 0.00 0.00 3.32
3005 3710 8.972458 TTCATTTTTAAAAGAAAAGGAAGGGG 57.028 30.769 0.14 0.00 41.51 4.79
3022 3728 9.023962 TCATAGCAGTTAGGAACATTCATTTTT 57.976 29.630 0.00 0.00 0.00 1.94
3124 3830 4.865905 TGTATATTGAACCAGTGGGCAAT 58.134 39.130 26.00 26.00 37.90 3.56
3135 3841 9.289303 CTACAAACAAAGGCATGTATATTGAAC 57.711 33.333 11.08 0.00 32.02 3.18
3144 3850 3.636300 TGAAGCTACAAACAAAGGCATGT 59.364 39.130 0.00 0.00 34.24 3.21
3163 3869 5.785423 TGGAGAAAAGGGAAGATCTACTGAA 59.215 40.000 0.00 0.00 0.00 3.02
3177 3883 5.997746 TCTCACAGTAAACATGGAGAAAAGG 59.002 40.000 0.00 0.00 0.00 3.11
3212 3918 8.279970 TGGTCAAACCTACATGAATGAAATAG 57.720 34.615 0.00 0.00 39.58 1.73
3213 3919 8.642935 TTGGTCAAACCTACATGAATGAAATA 57.357 30.769 0.00 0.00 39.58 1.40
3214 3920 7.537596 TTGGTCAAACCTACATGAATGAAAT 57.462 32.000 0.00 0.00 39.58 2.17
3379 4085 0.524862 CAGCAGACCAAACAGCCATC 59.475 55.000 0.00 0.00 0.00 3.51
3386 4092 0.037975 CCAATGCCAGCAGACCAAAC 60.038 55.000 0.00 0.00 0.00 2.93
3400 4106 1.520787 GACGGGGCGAGTACCAATG 60.521 63.158 0.00 0.00 0.00 2.82
3435 4141 5.570234 TTTAACAACCTGACCAACTTGAC 57.430 39.130 0.00 0.00 0.00 3.18
3471 4177 1.269413 ACTCGGTAACCTGAACACACG 60.269 52.381 0.00 0.00 0.00 4.49
3519 4225 6.638096 TGAAAGAGAGAACATTTGCATTCA 57.362 33.333 0.94 0.00 0.00 2.57
3849 4555 9.685005 CAGCGTGATAAACTTTGTTATACTTAC 57.315 33.333 0.00 0.00 0.00 2.34
3927 4633 2.928731 GCAAACGAGTCAGAAGGAGGAG 60.929 54.545 0.00 0.00 0.00 3.69
3934 4640 4.695217 AACAAAAGCAAACGAGTCAGAA 57.305 36.364 0.00 0.00 0.00 3.02
3957 4663 5.772825 TTGTTGAAATGTCCTCCTGAAAG 57.227 39.130 0.00 0.00 0.00 2.62
4104 4810 7.092079 CACCTTTTATCAAATCAGCAATGTCA 58.908 34.615 0.00 0.00 0.00 3.58
4193 4899 2.751166 AACTTGGGAGTCGACATGAG 57.249 50.000 19.50 10.17 34.21 2.90
4570 5276 2.631267 CCCAAAGCTGTGCAAAGTTTT 58.369 42.857 12.55 12.55 31.59 2.43
4592 5298 7.780271 TGATTACTACCTAGAGTCATGATGTGT 59.220 37.037 0.00 0.00 0.00 3.72
4928 5645 1.679898 CCACAACTCCCTCCCAGTC 59.320 63.158 0.00 0.00 0.00 3.51
5170 5892 1.005569 TCGGACAGAGTGGTGGATAGT 59.994 52.381 0.00 0.00 0.00 2.12
5171 5893 1.763968 TCGGACAGAGTGGTGGATAG 58.236 55.000 0.00 0.00 0.00 2.08
5172 5894 2.100197 CTTCGGACAGAGTGGTGGATA 58.900 52.381 0.00 0.00 0.00 2.59
5173 5895 0.898320 CTTCGGACAGAGTGGTGGAT 59.102 55.000 0.00 0.00 0.00 3.41
5174 5896 1.185618 CCTTCGGACAGAGTGGTGGA 61.186 60.000 0.00 0.00 0.00 4.02
5175 5897 1.185618 TCCTTCGGACAGAGTGGTGG 61.186 60.000 0.00 0.00 0.00 4.61
5206 5928 5.731678 AGAAGATAAGGTGGATAAGGTGGTT 59.268 40.000 0.00 0.00 0.00 3.67
5231 5973 1.810030 GCGGCTAAACGACTCAGGG 60.810 63.158 0.00 0.00 35.47 4.45
5250 5992 5.644188 TGGAAAGGGATGATCTCAGTTTTT 58.356 37.500 0.00 0.00 0.00 1.94
5251 5993 5.261040 TGGAAAGGGATGATCTCAGTTTT 57.739 39.130 0.00 0.00 0.00 2.43
5252 5994 4.934797 TGGAAAGGGATGATCTCAGTTT 57.065 40.909 0.00 0.00 0.00 2.66
5263 6005 3.895656 CTCATTCATGCATGGAAAGGGAT 59.104 43.478 25.97 0.00 0.00 3.85
5280 6022 0.251033 TCACCTGCTTGCTGCTCATT 60.251 50.000 0.00 0.00 43.37 2.57
5379 6121 2.048444 TTGCATCCTGGAATCAGAGC 57.952 50.000 0.00 0.00 43.49 4.09
5383 6125 2.028876 CTGCATTGCATCCTGGAATCA 58.971 47.619 12.53 0.00 36.23 2.57
5483 6231 1.526917 GGATGATGGCTCCGTTGGG 60.527 63.158 0.00 0.00 0.00 4.12
5507 6255 4.287720 CATCACATATTCACATGCAGCAC 58.712 43.478 0.00 0.00 0.00 4.40
5584 6340 1.154016 ACTCGGTCAGTTCATCGCG 60.154 57.895 0.00 0.00 26.56 5.87
5589 6345 2.137528 TGGGCACTCGGTCAGTTCA 61.138 57.895 0.00 0.00 30.26 3.18
5619 6375 0.878523 TTGTCCTGACCGCAGTTTCG 60.879 55.000 0.00 0.00 40.63 3.46
5620 6376 1.305201 TTTGTCCTGACCGCAGTTTC 58.695 50.000 0.00 0.00 40.63 2.78
5621 6377 1.608590 CATTTGTCCTGACCGCAGTTT 59.391 47.619 0.00 0.00 40.63 2.66
5622 6378 1.238439 CATTTGTCCTGACCGCAGTT 58.762 50.000 0.00 0.00 40.63 3.16
5623 6379 0.606401 CCATTTGTCCTGACCGCAGT 60.606 55.000 0.00 0.00 40.63 4.40
5624 6380 0.606401 ACCATTTGTCCTGACCGCAG 60.606 55.000 0.00 0.00 41.93 5.18
5625 6381 0.179004 AACCATTTGTCCTGACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
5626 6382 0.958822 AAACCATTTGTCCTGACCGC 59.041 50.000 0.00 0.00 0.00 5.68
5627 6383 2.704725 CAAACCATTTGTCCTGACCG 57.295 50.000 0.00 0.00 35.94 4.79
5641 6397 7.807907 CACATTTATCTACAAGTTGGACAAACC 59.192 37.037 7.96 0.00 39.85 3.27
5642 6398 7.326063 GCACATTTATCTACAAGTTGGACAAAC 59.674 37.037 7.96 0.00 39.24 2.93
5643 6399 7.013750 TGCACATTTATCTACAAGTTGGACAAA 59.986 33.333 7.96 0.00 0.00 2.83
5644 6400 6.488344 TGCACATTTATCTACAAGTTGGACAA 59.512 34.615 7.96 0.00 0.00 3.18
5645 6401 6.000840 TGCACATTTATCTACAAGTTGGACA 58.999 36.000 7.96 0.00 0.00 4.02
5646 6402 6.494893 TGCACATTTATCTACAAGTTGGAC 57.505 37.500 7.96 0.00 0.00 4.02
5647 6403 7.517614 TTTGCACATTTATCTACAAGTTGGA 57.482 32.000 7.96 0.00 0.00 3.53
5648 6404 8.649841 CATTTTGCACATTTATCTACAAGTTGG 58.350 33.333 7.96 0.00 0.00 3.77
5649 6405 8.164153 GCATTTTGCACATTTATCTACAAGTTG 58.836 33.333 0.00 0.00 44.26 3.16
5650 6406 7.062138 CGCATTTTGCACATTTATCTACAAGTT 59.938 33.333 0.00 0.00 45.36 2.66
5651 6407 6.527722 CGCATTTTGCACATTTATCTACAAGT 59.472 34.615 0.00 0.00 45.36 3.16
5652 6408 6.527722 ACGCATTTTGCACATTTATCTACAAG 59.472 34.615 0.00 0.00 45.36 3.16
5653 6409 6.307558 CACGCATTTTGCACATTTATCTACAA 59.692 34.615 0.00 0.00 45.36 2.41
5654 6410 5.799435 CACGCATTTTGCACATTTATCTACA 59.201 36.000 0.00 0.00 45.36 2.74
5655 6411 5.799936 ACACGCATTTTGCACATTTATCTAC 59.200 36.000 0.00 0.00 45.36 2.59
5656 6412 5.799435 CACACGCATTTTGCACATTTATCTA 59.201 36.000 0.00 0.00 45.36 1.98
5657 6413 4.622313 CACACGCATTTTGCACATTTATCT 59.378 37.500 0.00 0.00 45.36 1.98
5658 6414 4.620609 TCACACGCATTTTGCACATTTATC 59.379 37.500 0.00 0.00 45.36 1.75
5659 6415 4.554292 TCACACGCATTTTGCACATTTAT 58.446 34.783 0.00 0.00 45.36 1.40
5707 6463 6.652481 CAGAGCCAGTTCAAAATAAGAAGAGA 59.348 38.462 0.00 0.00 0.00 3.10
5708 6464 6.622462 GCAGAGCCAGTTCAAAATAAGAAGAG 60.622 42.308 0.00 0.00 0.00 2.85
5710 6466 5.182760 AGCAGAGCCAGTTCAAAATAAGAAG 59.817 40.000 0.00 0.00 0.00 2.85
5716 6473 1.891150 CCAGCAGAGCCAGTTCAAAAT 59.109 47.619 0.00 0.00 0.00 1.82
5742 6499 9.703892 CCACTAACAATGAAATAAACATGGAAA 57.296 29.630 0.00 0.00 0.00 3.13
5798 6555 7.174946 TGGAGAGAATAACCAACATTGTTCTTC 59.825 37.037 0.00 0.00 39.35 2.87
5810 6567 6.884832 ACGATGTTAATGGAGAGAATAACCA 58.115 36.000 0.00 0.00 38.09 3.67
5839 6652 1.741401 TGGCTGACGCTGCATACAC 60.741 57.895 0.00 0.00 36.09 2.90
5848 6661 2.186826 AAACCACTGTGGCTGACGC 61.187 57.895 26.20 0.00 42.67 5.19
5854 6670 0.534873 ACCAAACAAACCACTGTGGC 59.465 50.000 26.20 0.00 42.67 5.01
5855 6671 3.193691 TGTTACCAAACAAACCACTGTGG 59.806 43.478 24.80 24.80 42.60 4.17
5888 6704 2.270352 TTTCTTCCAGCGTGAACCAT 57.730 45.000 0.00 0.00 0.00 3.55
5894 6710 1.082104 GCGGTTTTCTTCCAGCGTG 60.082 57.895 0.00 0.00 36.29 5.34
5921 6737 0.517316 GGCCAAAGTCGCAACTAGTG 59.483 55.000 0.00 0.00 33.48 2.74
5923 6739 0.517316 GTGGCCAAAGTCGCAACTAG 59.483 55.000 7.24 0.00 33.48 2.57
5973 6790 7.596621 CCATGTGATCATGTACAGTACTGTATC 59.403 40.741 32.53 26.37 46.99 2.24
6003 6820 4.683320 CGTTCTCACGTATATCCGTAGAGA 59.317 45.833 14.35 14.35 41.84 3.10
6030 6847 1.135489 CAGCAATCACCATGTGAGCAC 60.135 52.381 10.01 0.00 46.04 4.40
6033 6850 1.460504 AGCAGCAATCACCATGTGAG 58.539 50.000 3.11 0.00 46.04 3.51
6048 6865 5.404366 ACAAATACAGTACACGTACAAGCAG 59.596 40.000 9.85 0.00 38.48 4.24
6049 6866 5.291178 ACAAATACAGTACACGTACAAGCA 58.709 37.500 9.85 0.00 38.48 3.91
6052 6869 5.921976 CCAGACAAATACAGTACACGTACAA 59.078 40.000 9.85 0.00 38.48 2.41
6105 6922 1.878656 GCTGTACTGAGCCACCGTCT 61.879 60.000 3.61 0.00 32.35 4.18
6106 6923 1.446272 GCTGTACTGAGCCACCGTC 60.446 63.158 3.61 0.00 32.35 4.79
6107 6924 2.657237 GCTGTACTGAGCCACCGT 59.343 61.111 3.61 0.00 32.35 4.83
6108 6925 1.929806 TACGCTGTACTGAGCCACCG 61.930 60.000 3.61 0.00 35.36 4.94
6117 6934 3.318839 TGTGGTACAAAGTACGCTGTACT 59.681 43.478 26.20 13.32 44.76 2.73
6123 6940 1.490621 ACGTGTGGTACAAAGTACGC 58.509 50.000 0.00 0.00 44.16 4.42
6147 6964 1.154205 GGATCATTCACTGACGCCCG 61.154 60.000 0.00 0.00 36.48 6.13
6192 7021 3.838903 AGTGGTAGGTTCTACCCTGAAAG 59.161 47.826 18.24 0.00 39.75 2.62
6221 7054 1.002502 GTTGTACTGGGCCCCACTC 60.003 63.158 22.27 8.30 0.00 3.51
6224 7057 1.439524 ATTGGTTGTACTGGGCCCCA 61.440 55.000 22.27 6.89 0.00 4.96
6291 7127 1.806542 CCAGTGACACTTGAATTCGGG 59.193 52.381 5.04 0.00 0.00 5.14
6295 7131 5.418676 CAAAAACCCAGTGACACTTGAATT 58.581 37.500 5.04 0.00 0.00 2.17
6296 7132 4.141959 CCAAAAACCCAGTGACACTTGAAT 60.142 41.667 5.04 0.00 0.00 2.57
6297 7133 3.194542 CCAAAAACCCAGTGACACTTGAA 59.805 43.478 5.04 0.00 0.00 2.69
6298 7134 2.757868 CCAAAAACCCAGTGACACTTGA 59.242 45.455 5.04 0.00 0.00 3.02
6299 7135 2.738321 GCCAAAAACCCAGTGACACTTG 60.738 50.000 5.04 2.02 0.00 3.16
6300 7136 1.480545 GCCAAAAACCCAGTGACACTT 59.519 47.619 5.04 0.00 0.00 3.16
6301 7137 1.111277 GCCAAAAACCCAGTGACACT 58.889 50.000 1.07 1.07 0.00 3.55
6302 7138 0.104120 GGCCAAAAACCCAGTGACAC 59.896 55.000 0.00 0.00 0.00 3.67
6303 7139 1.388065 CGGCCAAAAACCCAGTGACA 61.388 55.000 2.24 0.00 0.00 3.58
6304 7140 1.362355 CGGCCAAAAACCCAGTGAC 59.638 57.895 2.24 0.00 0.00 3.67
6305 7141 1.830408 CCGGCCAAAAACCCAGTGA 60.830 57.895 2.24 0.00 0.00 3.41
6306 7142 1.395826 TTCCGGCCAAAAACCCAGTG 61.396 55.000 2.24 0.00 0.00 3.66
6307 7143 0.688087 TTTCCGGCCAAAAACCCAGT 60.688 50.000 2.24 0.00 0.00 4.00
6308 7144 0.033366 CTTTCCGGCCAAAAACCCAG 59.967 55.000 2.24 0.00 0.00 4.45
6309 7145 0.397254 TCTTTCCGGCCAAAAACCCA 60.397 50.000 2.24 0.00 0.00 4.51
6310 7146 0.317160 CTCTTTCCGGCCAAAAACCC 59.683 55.000 2.24 0.00 0.00 4.11
6311 7147 0.317160 CCTCTTTCCGGCCAAAAACC 59.683 55.000 2.24 0.00 0.00 3.27
6312 7148 1.000607 GTCCTCTTTCCGGCCAAAAAC 60.001 52.381 2.24 0.00 0.00 2.43
6313 7149 1.324383 GTCCTCTTTCCGGCCAAAAA 58.676 50.000 2.24 0.91 0.00 1.94
6314 7150 0.887387 CGTCCTCTTTCCGGCCAAAA 60.887 55.000 2.24 1.33 0.00 2.44
6315 7151 1.302192 CGTCCTCTTTCCGGCCAAA 60.302 57.895 2.24 0.00 0.00 3.28
6316 7152 2.345991 CGTCCTCTTTCCGGCCAA 59.654 61.111 2.24 0.00 0.00 4.52
6317 7153 4.388499 GCGTCCTCTTTCCGGCCA 62.388 66.667 2.24 0.00 0.00 5.36
6318 7154 3.682292 ATGCGTCCTCTTTCCGGCC 62.682 63.158 0.00 0.00 0.00 6.13
6319 7155 1.305930 AAATGCGTCCTCTTTCCGGC 61.306 55.000 0.00 0.00 0.00 6.13
6320 7156 0.447801 CAAATGCGTCCTCTTTCCGG 59.552 55.000 0.00 0.00 0.00 5.14
6321 7157 0.179189 GCAAATGCGTCCTCTTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
6322 7158 0.171231 GGCAAATGCGTCCTCTTTCC 59.829 55.000 0.00 0.00 43.26 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.