Multiple sequence alignment - TraesCS7A01G448600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G448600 chr7A 100.000 2273 0 0 1 2273 642904215 642901943 0.000000e+00 4198.0
1 TraesCS7A01G448600 chr7A 96.631 564 18 1 1 564 284879675 284879113 0.000000e+00 935.0
2 TraesCS7A01G448600 chr7A 81.164 584 43 36 756 1308 643298079 643298626 7.560000e-110 407.0
3 TraesCS7A01G448600 chr7A 84.900 351 32 9 946 1275 643242692 643243042 3.620000e-88 335.0
4 TraesCS7A01G448600 chr2A 97.168 565 15 1 2 565 613831071 613831635 0.000000e+00 953.0
5 TraesCS7A01G448600 chr2A 96.809 564 16 1 1 564 525543722 525543161 0.000000e+00 941.0
6 TraesCS7A01G448600 chr3A 97.163 564 14 1 1 564 441976798 441977359 0.000000e+00 952.0
7 TraesCS7A01G448600 chr3A 97.163 564 14 1 1 564 442037319 442037880 0.000000e+00 952.0
8 TraesCS7A01G448600 chr3A 96.975 562 17 0 1 562 600427774 600427213 0.000000e+00 944.0
9 TraesCS7A01G448600 chr3A 96.814 565 17 1 1 565 709951001 709951564 0.000000e+00 942.0
10 TraesCS7A01G448600 chr5A 96.631 564 18 1 1 564 644345206 644345768 0.000000e+00 935.0
11 TraesCS7A01G448600 chr5A 96.154 572 21 1 1 571 346220750 346220179 0.000000e+00 933.0
12 TraesCS7A01G448600 chr7D 76.095 1439 182 86 744 2082 557348492 557347116 8.980000e-169 603.0
13 TraesCS7A01G448600 chr7D 83.066 561 51 25 746 1279 557778828 557779371 9.510000e-129 470.0
14 TraesCS7A01G448600 chr7D 86.792 159 15 6 1366 1522 557779470 557779624 3.000000e-39 172.0
15 TraesCS7A01G448600 chr7D 91.667 48 2 2 568 615 557351770 557351725 5.240000e-07 65.8
16 TraesCS7A01G448600 chrUn 81.073 671 52 34 655 1307 86734121 86733508 1.230000e-127 466.0
17 TraesCS7A01G448600 chrUn 92.000 50 4 0 2211 2260 86732963 86732914 1.130000e-08 71.3
18 TraesCS7A01G448600 chr7B 82.203 472 46 25 813 1272 605770550 605770995 2.760000e-99 372.0
19 TraesCS7A01G448600 chr7B 83.738 412 35 15 969 1349 605872237 605872647 5.970000e-96 361.0
20 TraesCS7A01G448600 chr7B 83.003 353 47 9 1187 1535 605111129 605110786 7.890000e-80 307.0
21 TraesCS7A01G448600 chr7B 94.304 158 9 0 977 1134 605112255 605112098 2.260000e-60 243.0
22 TraesCS7A01G448600 chr7B 80.782 307 25 20 795 1081 605079048 605078756 2.290000e-50 209.0
23 TraesCS7A01G448600 chr7B 85.417 192 21 6 1904 2093 605110643 605110457 2.300000e-45 193.0
24 TraesCS7A01G448600 chr7B 82.456 171 22 6 1366 1535 605072313 605072150 2.350000e-30 143.0
25 TraesCS7A01G448600 chr7B 91.228 57 4 1 1322 1377 605072387 605072331 2.420000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G448600 chr7A 642901943 642904215 2272 True 4198.000000 4198 100.000000 1 2273 1 chr7A.!!$R2 2272
1 TraesCS7A01G448600 chr7A 284879113 284879675 562 True 935.000000 935 96.631000 1 564 1 chr7A.!!$R1 563
2 TraesCS7A01G448600 chr7A 643298079 643298626 547 False 407.000000 407 81.164000 756 1308 1 chr7A.!!$F2 552
3 TraesCS7A01G448600 chr2A 613831071 613831635 564 False 953.000000 953 97.168000 2 565 1 chr2A.!!$F1 563
4 TraesCS7A01G448600 chr2A 525543161 525543722 561 True 941.000000 941 96.809000 1 564 1 chr2A.!!$R1 563
5 TraesCS7A01G448600 chr3A 441976798 441977359 561 False 952.000000 952 97.163000 1 564 1 chr3A.!!$F1 563
6 TraesCS7A01G448600 chr3A 442037319 442037880 561 False 952.000000 952 97.163000 1 564 1 chr3A.!!$F2 563
7 TraesCS7A01G448600 chr3A 600427213 600427774 561 True 944.000000 944 96.975000 1 562 1 chr3A.!!$R1 561
8 TraesCS7A01G448600 chr3A 709951001 709951564 563 False 942.000000 942 96.814000 1 565 1 chr3A.!!$F3 564
9 TraesCS7A01G448600 chr5A 644345206 644345768 562 False 935.000000 935 96.631000 1 564 1 chr5A.!!$F1 563
10 TraesCS7A01G448600 chr5A 346220179 346220750 571 True 933.000000 933 96.154000 1 571 1 chr5A.!!$R1 570
11 TraesCS7A01G448600 chr7D 557347116 557351770 4654 True 334.400000 603 83.881000 568 2082 2 chr7D.!!$R1 1514
12 TraesCS7A01G448600 chr7D 557778828 557779624 796 False 321.000000 470 84.929000 746 1522 2 chr7D.!!$F1 776
13 TraesCS7A01G448600 chrUn 86732914 86734121 1207 True 268.650000 466 86.536500 655 2260 2 chrUn.!!$R1 1605
14 TraesCS7A01G448600 chr7B 605110457 605112255 1798 True 247.666667 307 87.574667 977 2093 3 chr7B.!!$R3 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 4123 0.249073 CGCGAGAAATCGACCCATCT 60.249 55.0 0.0 0.0 34.64 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 6142 0.602106 GCTGAGACTTGCTGTGCTCA 60.602 55.0 0.0 0.0 34.32 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 3.548770 GTTTAAATACCTAGCCGCCCTT 58.451 45.455 0.00 0.00 0.00 3.95
265 266 4.967871 TCATCCTTCCCTTCCCTTTACTA 58.032 43.478 0.00 0.00 0.00 1.82
291 292 2.229792 TGGTCCTTGTGAAGTCATTGC 58.770 47.619 0.00 0.00 0.00 3.56
345 346 1.808945 CTGCTTGTTCTGATCGGCTTT 59.191 47.619 0.00 0.00 0.00 3.51
439 440 5.080969 TGACTATGGTTTGCCTAGTGTAC 57.919 43.478 0.00 0.00 32.62 2.90
473 474 7.994334 TCCGCTGTATGGTAATAGGTTTATTTT 59.006 33.333 0.00 0.00 31.97 1.82
495 496 8.898983 TTTTTATCGTTTGTCTTCGAAACTTT 57.101 26.923 0.00 0.00 39.45 2.66
532 533 9.125026 AGACTTTCATAAAAATCGCCTATTCAT 57.875 29.630 0.00 0.00 0.00 2.57
565 568 4.360563 AGTCGATATAACGCACTTTCAGG 58.639 43.478 0.00 0.00 0.00 3.86
619 631 9.925268 AAAATATACTTAATTAGTTTCACGGCG 57.075 29.630 4.80 4.80 38.33 6.46
638 650 1.507096 GAGCAAAGCGCACGTTACG 60.507 57.895 11.47 2.19 46.13 3.18
646 658 2.716828 CGCACGTTACGCTCTGGTG 61.717 63.158 4.09 0.00 0.00 4.17
647 659 3.011760 GCACGTTACGCTCTGGTGC 62.012 63.158 4.09 1.99 45.82 5.01
682 3760 1.300388 CCGAACCAAGGAACGACGT 60.300 57.895 0.00 0.00 0.00 4.34
688 3766 1.566018 CCAAGGAACGACGTCAAGCC 61.566 60.000 17.16 12.51 0.00 4.35
742 3831 0.603975 AGGCCTCACTTTTGTCGAGC 60.604 55.000 0.00 0.00 0.00 5.03
825 3937 2.523902 CCAGCAACCAAAGCCCCA 60.524 61.111 0.00 0.00 0.00 4.96
835 3947 1.229496 AAAGCCCCATGTTTCCCCC 60.229 57.895 0.00 0.00 0.00 5.40
847 3959 2.257409 TTTCCCCCTGCATCTCGCTC 62.257 60.000 0.00 0.00 43.06 5.03
855 3969 2.584418 CATCTCGCTCCACGCTGG 60.584 66.667 0.00 0.00 43.23 4.85
856 3970 4.521062 ATCTCGCTCCACGCTGGC 62.521 66.667 0.00 0.00 43.23 4.85
861 3975 2.437359 GCTCCACGCTGGCTGAAT 60.437 61.111 0.00 0.00 37.47 2.57
862 3976 2.467826 GCTCCACGCTGGCTGAATC 61.468 63.158 0.00 0.00 37.47 2.52
863 3977 1.817099 CTCCACGCTGGCTGAATCC 60.817 63.158 0.00 0.00 37.47 3.01
864 3978 2.046023 CCACGCTGGCTGAATCCA 60.046 61.111 0.00 0.00 34.42 3.41
865 3979 1.452651 CCACGCTGGCTGAATCCAT 60.453 57.895 0.00 0.00 35.22 3.41
875 3989 1.439353 CTGAATCCATTCCCCACGCG 61.439 60.000 3.53 3.53 35.97 6.01
935 4055 1.007271 CACTGCGTCGACTCAACCT 60.007 57.895 14.70 0.00 0.00 3.50
947 4087 3.580731 GACTCAACCTACAGAGTTCAGC 58.419 50.000 0.00 0.00 44.61 4.26
948 4088 2.965831 ACTCAACCTACAGAGTTCAGCA 59.034 45.455 0.00 0.00 42.12 4.41
956 4096 1.486310 ACAGAGTTCAGCACAACCTCA 59.514 47.619 0.00 0.00 0.00 3.86
959 4099 0.471617 AGTTCAGCACAACCTCAGCT 59.528 50.000 0.00 0.00 39.63 4.24
967 4107 1.080501 CAACCTCAGCTCGCGAGAA 60.081 57.895 38.74 21.23 41.32 2.87
979 4123 0.249073 CGCGAGAAATCGACCCATCT 60.249 55.000 0.00 0.00 34.64 2.90
1183 4348 1.292941 CCTCTCCTCCTCCTCCTCCA 61.293 65.000 0.00 0.00 0.00 3.86
1184 4349 0.633921 CTCTCCTCCTCCTCCTCCAA 59.366 60.000 0.00 0.00 0.00 3.53
1282 5384 4.767478 GGGACCCAACTGATTTCTAGTAC 58.233 47.826 5.33 0.00 0.00 2.73
1283 5385 4.470304 GGGACCCAACTGATTTCTAGTACT 59.530 45.833 5.33 0.00 0.00 2.73
1285 5387 6.183360 GGGACCCAACTGATTTCTAGTACTAG 60.183 46.154 21.87 21.87 34.56 2.57
1288 5390 6.608002 ACCCAACTGATTTCTAGTACTAGAGG 59.392 42.308 27.17 23.04 42.50 3.69
1293 5395 6.068971 ACTGATTTCTAGTACTAGAGGACCCA 60.069 42.308 27.17 20.22 42.50 4.51
1304 5406 5.561679 ACTAGAGGACCCATTTTTGTTCTC 58.438 41.667 0.00 0.00 37.37 2.87
1377 5489 5.051441 CCGTGAATGATGTGTAAATCGAGAG 60.051 44.000 0.00 0.00 0.00 3.20
1378 5490 5.516696 CGTGAATGATGTGTAAATCGAGAGT 59.483 40.000 0.00 0.00 0.00 3.24
1379 5491 6.691388 CGTGAATGATGTGTAAATCGAGAGTA 59.309 38.462 0.00 0.00 0.00 2.59
1380 5492 7.379797 CGTGAATGATGTGTAAATCGAGAGTAT 59.620 37.037 0.00 0.00 0.00 2.12
1384 5496 8.694975 ATGATGTGTAAATCGAGAGTATATGC 57.305 34.615 0.00 0.00 0.00 3.14
1387 5526 7.930513 TGTGTAAATCGAGAGTATATGCTTG 57.069 36.000 0.00 0.00 0.00 4.01
1404 5543 2.936928 TGCAAGGTCAGTCATGCAG 58.063 52.632 0.00 0.00 43.32 4.41
1408 5547 0.681733 AAGGTCAGTCATGCAGTCGT 59.318 50.000 0.00 0.00 0.00 4.34
1456 5599 7.591165 CCAAGTGATTGATGAGGCAAATATAG 58.409 38.462 0.00 0.00 0.00 1.31
1462 5605 8.632679 TGATTGATGAGGCAAATATAGGAAAAC 58.367 33.333 0.00 0.00 0.00 2.43
1470 5613 4.744631 GCAAATATAGGAAAACGGCATTGG 59.255 41.667 0.00 0.00 0.00 3.16
1475 5624 0.958822 GGAAAACGGCATTGGTCTGT 59.041 50.000 0.00 0.00 0.00 3.41
1484 5633 3.153919 GGCATTGGTCTGTACAAGGAAA 58.846 45.455 0.00 0.00 31.82 3.13
1485 5634 3.191371 GGCATTGGTCTGTACAAGGAAAG 59.809 47.826 0.00 0.00 31.82 2.62
1486 5635 3.191371 GCATTGGTCTGTACAAGGAAAGG 59.809 47.826 0.00 0.00 31.82 3.11
1488 5637 4.781775 TTGGTCTGTACAAGGAAAGGAA 57.218 40.909 0.00 0.00 0.00 3.36
1489 5638 4.081322 TGGTCTGTACAAGGAAAGGAAC 57.919 45.455 0.00 0.00 0.00 3.62
1492 5641 3.813724 GTCTGTACAAGGAAAGGAACCAC 59.186 47.826 0.00 0.00 0.00 4.16
1493 5642 2.806244 CTGTACAAGGAAAGGAACCACG 59.194 50.000 0.00 0.00 0.00 4.94
1494 5643 2.171027 TGTACAAGGAAAGGAACCACGT 59.829 45.455 0.00 0.00 0.00 4.49
1495 5644 3.387374 TGTACAAGGAAAGGAACCACGTA 59.613 43.478 0.00 0.00 0.00 3.57
1498 5647 3.326880 ACAAGGAAAGGAACCACGTATCT 59.673 43.478 0.00 0.00 0.00 1.98
1499 5648 3.889520 AGGAAAGGAACCACGTATCTC 57.110 47.619 0.00 0.00 0.00 2.75
1500 5649 3.442076 AGGAAAGGAACCACGTATCTCT 58.558 45.455 0.00 0.00 0.00 3.10
1503 5652 4.392138 GGAAAGGAACCACGTATCTCTTTG 59.608 45.833 12.15 0.00 0.00 2.77
1504 5653 2.973945 AGGAACCACGTATCTCTTTGC 58.026 47.619 0.00 0.00 0.00 3.68
1522 5676 6.957631 TCTTTGCTCTTGGATCTTACCAATA 58.042 36.000 0.00 0.00 46.77 1.90
1535 5689 5.180271 TCTTACCAATACCCGATGTGTTTC 58.820 41.667 0.00 0.00 0.00 2.78
1536 5690 3.713826 ACCAATACCCGATGTGTTTCT 57.286 42.857 0.00 0.00 0.00 2.52
1537 5691 3.343617 ACCAATACCCGATGTGTTTCTG 58.656 45.455 0.00 0.00 0.00 3.02
1538 5692 3.008594 ACCAATACCCGATGTGTTTCTGA 59.991 43.478 0.00 0.00 0.00 3.27
1562 5727 7.778382 TGATGATGATCAGATCTCACCAAATTT 59.222 33.333 11.83 0.00 33.40 1.82
1563 5728 7.949690 TGATGATCAGATCTCACCAAATTTT 57.050 32.000 11.83 0.00 0.00 1.82
1568 5733 6.494893 TCAGATCTCACCAAATTTTAACGG 57.505 37.500 0.00 0.00 0.00 4.44
1575 5740 5.074115 TCACCAAATTTTAACGGTCATCCT 58.926 37.500 0.00 0.00 0.00 3.24
1586 5756 2.773993 GGTCATCCTAACCGGTTGAA 57.226 50.000 30.08 14.78 41.83 2.69
1594 5764 0.322997 TAACCGGTTGAATGGCAGGG 60.323 55.000 30.08 0.00 0.00 4.45
1619 5789 2.153645 CTGGATTTACAGTGCAGCACA 58.846 47.619 27.35 6.64 36.74 4.57
1621 5791 2.488937 TGGATTTACAGTGCAGCACATG 59.511 45.455 27.35 22.00 36.74 3.21
1630 5800 1.205655 GTGCAGCACATGTAGAGAGGA 59.794 52.381 21.22 0.00 34.08 3.71
1644 5814 9.605275 CATGTAGAGAGGAACAAATATTCAGAA 57.395 33.333 0.00 0.00 0.00 3.02
1645 5815 9.606631 ATGTAGAGAGGAACAAATATTCAGAAC 57.393 33.333 0.00 0.00 0.00 3.01
1650 5820 9.617975 GAGAGGAACAAATATTCAGAACTTTTG 57.382 33.333 14.14 14.14 34.34 2.44
1651 5821 8.084684 AGAGGAACAAATATTCAGAACTTTTGC 58.915 33.333 15.09 5.00 31.99 3.68
1652 5822 7.725251 AGGAACAAATATTCAGAACTTTTGCA 58.275 30.769 15.09 0.00 31.99 4.08
1653 5823 8.370182 AGGAACAAATATTCAGAACTTTTGCAT 58.630 29.630 15.09 8.09 31.99 3.96
1654 5824 8.650714 GGAACAAATATTCAGAACTTTTGCATC 58.349 33.333 15.09 13.57 31.99 3.91
1655 5825 8.538409 AACAAATATTCAGAACTTTTGCATCC 57.462 30.769 15.09 0.00 31.99 3.51
1656 5826 7.669427 ACAAATATTCAGAACTTTTGCATCCA 58.331 30.769 15.09 0.00 31.99 3.41
1657 5827 8.149647 ACAAATATTCAGAACTTTTGCATCCAA 58.850 29.630 15.09 0.00 31.99 3.53
1658 5828 8.991026 CAAATATTCAGAACTTTTGCATCCAAA 58.009 29.630 6.68 0.00 39.08 3.28
1661 5831 5.336150 TCAGAACTTTTGCATCCAAACAA 57.664 34.783 0.00 0.00 40.45 2.83
1666 5836 4.432712 ACTTTTGCATCCAAACAACAGAC 58.567 39.130 0.00 0.00 40.45 3.51
1704 5889 9.599866 TGACAATAGATATATAGAATTTGGCCG 57.400 33.333 0.00 0.00 0.00 6.13
1705 5890 8.964476 ACAATAGATATATAGAATTTGGCCGG 57.036 34.615 0.00 0.00 0.00 6.13
1706 5891 8.548877 ACAATAGATATATAGAATTTGGCCGGT 58.451 33.333 1.90 0.00 0.00 5.28
1709 5894 7.490657 AGATATATAGAATTTGGCCGGTACA 57.509 36.000 1.90 0.00 0.00 2.90
1710 5895 7.556844 AGATATATAGAATTTGGCCGGTACAG 58.443 38.462 1.90 0.00 0.00 2.74
1711 5896 3.926058 ATAGAATTTGGCCGGTACAGT 57.074 42.857 1.90 0.00 0.00 3.55
1712 5897 2.579410 AGAATTTGGCCGGTACAGTT 57.421 45.000 1.90 2.24 0.00 3.16
1713 5898 2.871453 AGAATTTGGCCGGTACAGTTT 58.129 42.857 1.90 0.65 0.00 2.66
1714 5899 4.023726 AGAATTTGGCCGGTACAGTTTA 57.976 40.909 1.90 0.00 0.00 2.01
1715 5900 3.754850 AGAATTTGGCCGGTACAGTTTAC 59.245 43.478 1.90 0.00 0.00 2.01
1716 5901 2.634815 TTTGGCCGGTACAGTTTACA 57.365 45.000 1.90 0.00 0.00 2.41
1717 5902 2.172851 TTGGCCGGTACAGTTTACAG 57.827 50.000 1.90 0.00 0.00 2.74
1718 5903 0.322322 TGGCCGGTACAGTTTACAGG 59.678 55.000 1.90 1.61 36.15 4.00
1720 5905 1.208776 GGCCGGTACAGTTTACAGGAT 59.791 52.381 9.51 0.00 35.26 3.24
1721 5906 2.355412 GGCCGGTACAGTTTACAGGATT 60.355 50.000 9.51 0.00 35.26 3.01
1722 5907 2.934553 GCCGGTACAGTTTACAGGATTC 59.065 50.000 9.51 0.00 35.26 2.52
1723 5908 3.618019 GCCGGTACAGTTTACAGGATTCA 60.618 47.826 9.51 0.00 35.26 2.57
1724 5909 4.766375 CCGGTACAGTTTACAGGATTCAT 58.234 43.478 0.00 0.00 35.26 2.57
1725 5910 4.570772 CCGGTACAGTTTACAGGATTCATG 59.429 45.833 0.00 0.00 35.26 3.07
1726 5911 4.034048 CGGTACAGTTTACAGGATTCATGC 59.966 45.833 0.00 0.00 0.00 4.06
1727 5912 5.186198 GGTACAGTTTACAGGATTCATGCT 58.814 41.667 0.00 0.00 0.00 3.79
1752 5937 6.006449 GGTTGAGCTCCCATATTACATGATT 58.994 40.000 12.15 0.00 0.00 2.57
1768 5953 6.713762 ACATGATTTGGTGTTTTCTCTTGA 57.286 33.333 0.00 0.00 0.00 3.02
1783 5968 4.950050 TCTCTTGACTTCAGGACAAGAAC 58.050 43.478 14.87 0.00 45.60 3.01
1786 5971 1.420138 TGACTTCAGGACAAGAACCCC 59.580 52.381 0.00 0.00 0.00 4.95
1810 5995 6.015940 CCTTAATGATCATGCCTAAAAGGGAC 60.016 42.308 9.46 0.00 39.03 4.46
1831 6016 6.823689 GGGACTAAACTCTTGAATCAGCAATA 59.176 38.462 0.00 0.00 0.00 1.90
1836 6021 9.766277 CTAAACTCTTGAATCAGCAATAAAGAC 57.234 33.333 0.00 0.00 0.00 3.01
1840 6025 5.705441 TCTTGAATCAGCAATAAAGACGGTT 59.295 36.000 0.00 0.00 0.00 4.44
1841 6026 5.295431 TGAATCAGCAATAAAGACGGTTG 57.705 39.130 0.00 0.00 0.00 3.77
1846 6031 3.252215 CAGCAATAAAGACGGTTGGACAA 59.748 43.478 0.00 0.00 0.00 3.18
1870 6055 4.753516 AACAAGGGAAAAGTGGGAAAAG 57.246 40.909 0.00 0.00 0.00 2.27
1873 6058 5.711698 ACAAGGGAAAAGTGGGAAAAGATA 58.288 37.500 0.00 0.00 0.00 1.98
1883 6068 9.758651 AAAAGTGGGAAAAGATAACATTGTAAC 57.241 29.630 0.00 0.00 0.00 2.50
1884 6069 8.706322 AAGTGGGAAAAGATAACATTGTAACT 57.294 30.769 0.00 0.00 0.00 2.24
1887 6072 8.357402 GTGGGAAAAGATAACATTGTAACTGTT 58.643 33.333 0.00 0.00 39.93 3.16
1888 6073 8.356657 TGGGAAAAGATAACATTGTAACTGTTG 58.643 33.333 2.69 0.00 37.41 3.33
1897 6093 4.279169 ACATTGTAACTGTTGCAGCTGATT 59.721 37.500 20.43 3.58 34.37 2.57
1899 6095 5.356882 TTGTAACTGTTGCAGCTGATTAC 57.643 39.130 20.43 11.89 34.37 1.89
1930 6126 7.394016 TGCTGTACTAAATGAAGATTGAGGAA 58.606 34.615 0.00 0.00 0.00 3.36
1934 6130 9.567776 TGTACTAAATGAAGATTGAGGAAAACA 57.432 29.630 0.00 0.00 0.00 2.83
1940 6137 9.671279 AAATGAAGATTGAGGAAAACAAAAAGT 57.329 25.926 0.00 0.00 0.00 2.66
1951 6148 6.811665 AGGAAAACAAAAAGTTACTTGAGCAC 59.188 34.615 0.00 0.00 40.26 4.40
1966 6163 1.302351 GCACAGCAAGTCTCAGCCT 60.302 57.895 0.00 0.00 0.00 4.58
1973 6170 3.131933 CAGCAAGTCTCAGCCTACTACAT 59.868 47.826 0.00 0.00 0.00 2.29
2006 6209 1.321474 CTTTCTTGCCCAGCTGTTGA 58.679 50.000 13.81 0.27 0.00 3.18
2035 6239 7.807433 TGAATTATGATCAGTTTGTTCAAACCG 59.193 33.333 20.21 13.11 30.83 4.44
2047 6259 3.495670 TTCAAACCGAACACCAACAAG 57.504 42.857 0.00 0.00 0.00 3.16
2067 6279 4.130286 AGGTCGATTCAGAAACTGGATC 57.870 45.455 9.30 9.30 41.68 3.36
2071 6283 5.694006 GGTCGATTCAGAAACTGGATCATAG 59.306 44.000 16.87 4.66 44.42 2.23
2072 6284 5.694006 GTCGATTCAGAAACTGGATCATAGG 59.306 44.000 16.87 4.39 44.42 2.57
2073 6285 5.598417 TCGATTCAGAAACTGGATCATAGGA 59.402 40.000 16.87 6.21 44.42 2.94
2074 6286 6.268617 TCGATTCAGAAACTGGATCATAGGAT 59.731 38.462 16.87 0.00 44.42 3.24
2075 6287 6.589523 CGATTCAGAAACTGGATCATAGGATC 59.410 42.308 16.87 8.89 44.42 3.36
2076 6288 7.525194 CGATTCAGAAACTGGATCATAGGATCT 60.525 40.741 16.36 0.00 44.42 2.75
2107 6319 5.512576 GGTCTTAAGGAGTTTAAGGTGCAGA 60.513 44.000 1.85 0.00 45.46 4.26
2110 6322 7.175119 GTCTTAAGGAGTTTAAGGTGCAGAATT 59.825 37.037 1.85 0.00 45.46 2.17
2122 6334 2.825532 GTGCAGAATTTAAGGCCCAGAA 59.174 45.455 0.00 0.00 0.00 3.02
2124 6336 3.900601 TGCAGAATTTAAGGCCCAGAAAA 59.099 39.130 0.00 0.00 0.00 2.29
2125 6337 4.531732 TGCAGAATTTAAGGCCCAGAAAAT 59.468 37.500 0.00 0.00 0.00 1.82
2126 6338 5.719085 TGCAGAATTTAAGGCCCAGAAAATA 59.281 36.000 0.00 0.00 0.00 1.40
2127 6339 6.383726 TGCAGAATTTAAGGCCCAGAAAATAT 59.616 34.615 0.00 0.00 0.00 1.28
2128 6340 7.563188 TGCAGAATTTAAGGCCCAGAAAATATA 59.437 33.333 0.00 0.00 0.00 0.86
2129 6341 8.084684 GCAGAATTTAAGGCCCAGAAAATATAG 58.915 37.037 0.00 0.00 0.00 1.31
2130 6342 9.136323 CAGAATTTAAGGCCCAGAAAATATAGT 57.864 33.333 0.00 0.00 0.00 2.12
2163 6375 7.588143 GATGATAATTCGTCCTTCATCGATT 57.412 36.000 0.00 0.00 35.02 3.34
2168 6380 9.790389 GATAATTCGTCCTTCATCGATTATAGT 57.210 33.333 0.00 0.00 36.01 2.12
2173 6385 7.582352 TCGTCCTTCATCGATTATAGTACTTG 58.418 38.462 0.00 0.00 0.00 3.16
2196 6408 0.909133 TCCTGCCTATCCTGCACACA 60.909 55.000 0.00 0.00 34.46 3.72
2202 6414 1.414181 CCTATCCTGCACACACTAGGG 59.586 57.143 0.00 0.00 32.39 3.53
2203 6415 2.388735 CTATCCTGCACACACTAGGGA 58.611 52.381 0.00 0.00 32.39 4.20
2205 6417 1.429930 TCCTGCACACACTAGGGAAA 58.570 50.000 0.00 0.00 32.39 3.13
2241 6595 5.880054 ACATAGGTAAGCAAACATGACAC 57.120 39.130 0.00 0.00 0.00 3.67
2242 6596 5.560724 ACATAGGTAAGCAAACATGACACT 58.439 37.500 0.00 0.00 0.00 3.55
2244 6598 3.820557 AGGTAAGCAAACATGACACTGT 58.179 40.909 0.00 0.00 0.00 3.55
2257 6611 2.874086 TGACACTGTTTGATGCTGTCAG 59.126 45.455 0.00 0.00 37.03 3.51
2267 6621 2.674380 GCTGTCAGCAACCCCCTG 60.674 66.667 20.16 0.00 41.89 4.45
2268 6622 3.160585 CTGTCAGCAACCCCCTGA 58.839 61.111 0.00 0.00 37.01 3.86
2269 6623 1.002868 CTGTCAGCAACCCCCTGAG 60.003 63.158 0.00 0.00 39.79 3.35
2270 6624 1.461268 TGTCAGCAACCCCCTGAGA 60.461 57.895 0.00 0.00 39.79 3.27
2271 6625 1.298014 GTCAGCAACCCCCTGAGAG 59.702 63.158 0.00 0.00 39.79 3.20
2272 6626 1.152030 TCAGCAACCCCCTGAGAGT 60.152 57.895 0.00 0.00 34.59 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 2.950975 TGTGACAACTGTACGTCTGGTA 59.049 45.455 0.00 0.00 33.18 3.25
265 266 3.279434 GACTTCACAAGGACCAACAGTT 58.721 45.455 0.00 0.00 0.00 3.16
291 292 6.537660 TGAAGACAGAAGATAGTGCAATCATG 59.462 38.462 0.00 0.00 0.00 3.07
374 375 5.069648 AGCACAATGACTAATAGCAGCTAGA 59.930 40.000 8.43 0.00 0.00 2.43
439 440 2.032620 ACCATACAGCGGAAGGTAGAG 58.967 52.381 0.00 0.00 41.81 2.43
473 474 7.121272 GTGAAAGTTTCGAAGACAAACGATAA 58.879 34.615 10.92 0.00 38.54 1.75
495 496 9.796120 ATTTTTATGAAAGTCTTCAAAACGTGA 57.204 25.926 0.00 0.00 44.64 4.35
595 598 7.927629 TCCGCCGTGAAACTAATTAAGTATATT 59.072 33.333 0.00 0.00 37.50 1.28
601 604 3.242316 GCTCCGCCGTGAAACTAATTAAG 60.242 47.826 0.00 0.00 31.75 1.85
605 608 0.036765 TGCTCCGCCGTGAAACTAAT 60.037 50.000 0.00 0.00 31.75 1.73
606 609 0.249953 TTGCTCCGCCGTGAAACTAA 60.250 50.000 0.00 0.00 31.75 2.24
607 610 0.249953 TTTGCTCCGCCGTGAAACTA 60.250 50.000 0.00 0.00 31.75 2.24
608 611 1.507141 CTTTGCTCCGCCGTGAAACT 61.507 55.000 0.00 0.00 31.75 2.66
609 612 1.082104 CTTTGCTCCGCCGTGAAAC 60.082 57.895 0.00 0.00 0.00 2.78
611 614 3.353836 GCTTTGCTCCGCCGTGAA 61.354 61.111 0.00 0.00 0.00 3.18
619 631 1.154469 GTAACGTGCGCTTTGCTCC 60.154 57.895 9.73 0.00 46.63 4.70
643 655 4.501714 TATCACGCCGGTCGCACC 62.502 66.667 16.48 0.00 43.23 5.01
653 665 2.588034 GGTTCGGGGCTATCACGC 60.588 66.667 0.00 0.00 0.00 5.34
654 666 0.810031 CTTGGTTCGGGGCTATCACG 60.810 60.000 0.00 0.00 0.00 4.35
655 667 0.463833 CCTTGGTTCGGGGCTATCAC 60.464 60.000 0.00 0.00 0.00 3.06
659 3737 1.681076 GTTCCTTGGTTCGGGGCTA 59.319 57.895 0.00 0.00 0.00 3.93
825 3937 0.107017 CGAGATGCAGGGGGAAACAT 60.107 55.000 0.00 0.00 0.00 2.71
847 3959 1.033746 AATGGATTCAGCCAGCGTGG 61.034 55.000 0.00 0.25 42.15 4.94
855 3969 1.728490 GCGTGGGGAATGGATTCAGC 61.728 60.000 1.94 0.00 38.53 4.26
856 3970 1.439353 CGCGTGGGGAATGGATTCAG 61.439 60.000 0.00 0.00 38.53 3.02
857 3971 1.451207 CGCGTGGGGAATGGATTCA 60.451 57.895 0.00 0.00 38.53 2.57
858 3972 2.834618 GCGCGTGGGGAATGGATTC 61.835 63.158 8.43 0.00 36.08 2.52
859 3973 2.828549 GCGCGTGGGGAATGGATT 60.829 61.111 8.43 0.00 0.00 3.01
875 3989 1.123756 GCGAGGTGTTTATATACGCGC 59.876 52.381 5.73 0.00 34.66 6.86
920 4035 0.240145 CTGTAGGTTGAGTCGACGCA 59.760 55.000 18.48 18.48 0.00 5.24
935 4055 2.698274 TGAGGTTGTGCTGAACTCTGTA 59.302 45.455 0.00 0.00 0.00 2.74
947 4087 2.049156 TCGCGAGCTGAGGTTGTG 60.049 61.111 3.71 6.11 0.00 3.33
948 4088 1.806461 TTCTCGCGAGCTGAGGTTGT 61.806 55.000 30.97 0.00 34.19 3.32
956 4096 4.386245 GTCGATTTCTCGCGAGCT 57.614 55.556 30.97 17.49 44.65 4.09
959 4099 0.248907 GATGGGTCGATTTCTCGCGA 60.249 55.000 9.26 9.26 44.65 5.87
967 4107 2.028930 GCTTCCGATAGATGGGTCGATT 60.029 50.000 0.00 0.00 40.11 3.34
979 4123 3.089284 TCTCTGTCTTGTGCTTCCGATA 58.911 45.455 0.00 0.00 0.00 2.92
1067 4211 4.020617 CCGCCTGGTCCTTGAGCA 62.021 66.667 0.00 0.00 37.74 4.26
1276 5378 7.184067 ACAAAAATGGGTCCTCTAGTACTAG 57.816 40.000 21.87 21.87 34.56 2.57
1277 5379 7.456902 AGAACAAAAATGGGTCCTCTAGTACTA 59.543 37.037 1.89 1.89 0.00 1.82
1279 5381 6.473758 AGAACAAAAATGGGTCCTCTAGTAC 58.526 40.000 0.00 0.00 0.00 2.73
1282 5384 4.944317 GGAGAACAAAAATGGGTCCTCTAG 59.056 45.833 0.00 0.00 0.00 2.43
1283 5385 4.601857 AGGAGAACAAAAATGGGTCCTCTA 59.398 41.667 0.00 0.00 0.00 2.43
1285 5387 3.507622 CAGGAGAACAAAAATGGGTCCTC 59.492 47.826 0.00 0.00 30.26 3.71
1310 5416 2.717639 AATGGAGAATCTGAACCGGG 57.282 50.000 6.32 0.00 33.73 5.73
1377 5489 4.191544 TGACTGACCTTGCAAGCATATAC 58.808 43.478 21.43 10.68 0.00 1.47
1378 5490 4.486125 TGACTGACCTTGCAAGCATATA 57.514 40.909 21.43 4.19 0.00 0.86
1379 5491 3.354948 TGACTGACCTTGCAAGCATAT 57.645 42.857 21.43 5.71 0.00 1.78
1380 5492 2.857186 TGACTGACCTTGCAAGCATA 57.143 45.000 21.43 7.66 0.00 3.14
1382 5494 1.241165 CATGACTGACCTTGCAAGCA 58.759 50.000 21.43 13.23 0.00 3.91
1383 5495 0.109412 GCATGACTGACCTTGCAAGC 60.109 55.000 21.43 9.00 37.23 4.01
1384 5496 1.199327 CTGCATGACTGACCTTGCAAG 59.801 52.381 19.93 19.93 43.49 4.01
1387 5526 0.801251 GACTGCATGACTGACCTTGC 59.199 55.000 0.00 0.00 37.62 4.01
1456 5599 0.958822 ACAGACCAATGCCGTTTTCC 59.041 50.000 0.00 0.00 0.00 3.13
1462 5605 1.086696 CCTTGTACAGACCAATGCCG 58.913 55.000 0.00 0.00 0.00 5.69
1470 5613 3.813724 GTGGTTCCTTTCCTTGTACAGAC 59.186 47.826 0.00 0.00 0.00 3.51
1475 5624 4.529377 AGATACGTGGTTCCTTTCCTTGTA 59.471 41.667 0.00 0.00 0.00 2.41
1484 5633 2.567615 AGCAAAGAGATACGTGGTTCCT 59.432 45.455 0.00 0.00 0.00 3.36
1485 5634 2.930682 GAGCAAAGAGATACGTGGTTCC 59.069 50.000 0.00 0.00 0.00 3.62
1486 5635 3.851098 AGAGCAAAGAGATACGTGGTTC 58.149 45.455 0.00 0.00 0.00 3.62
1488 5637 3.589988 CAAGAGCAAAGAGATACGTGGT 58.410 45.455 0.00 0.00 0.00 4.16
1489 5638 2.932614 CCAAGAGCAAAGAGATACGTGG 59.067 50.000 0.00 0.00 0.00 4.94
1492 5641 4.942852 AGATCCAAGAGCAAAGAGATACG 58.057 43.478 0.00 0.00 0.00 3.06
1493 5642 6.704050 GGTAAGATCCAAGAGCAAAGAGATAC 59.296 42.308 0.00 0.00 0.00 2.24
1494 5643 6.384015 TGGTAAGATCCAAGAGCAAAGAGATA 59.616 38.462 0.00 0.00 34.24 1.98
1495 5644 5.190528 TGGTAAGATCCAAGAGCAAAGAGAT 59.809 40.000 0.00 0.00 34.24 2.75
1498 5647 4.908601 TGGTAAGATCCAAGAGCAAAGA 57.091 40.909 0.00 0.00 34.24 2.52
1522 5676 3.055167 TCATCATCAGAAACACATCGGGT 60.055 43.478 0.00 0.00 0.00 5.28
1536 5690 5.881923 TTGGTGAGATCTGATCATCATCA 57.118 39.130 19.12 19.54 37.62 3.07
1537 5691 7.747155 AATTTGGTGAGATCTGATCATCATC 57.253 36.000 19.12 17.65 37.62 2.92
1538 5692 8.534954 AAAATTTGGTGAGATCTGATCATCAT 57.465 30.769 19.12 0.00 37.62 2.45
1555 5720 6.327154 GGTTAGGATGACCGTTAAAATTTGG 58.673 40.000 0.00 0.00 41.83 3.28
1575 5740 0.322997 CCCTGCCATTCAACCGGTTA 60.323 55.000 21.79 5.75 0.00 2.85
1584 5754 2.345760 CCAGTGTGCCCTGCCATTC 61.346 63.158 0.00 0.00 0.00 2.67
1586 5756 2.159101 AATCCAGTGTGCCCTGCCAT 62.159 55.000 0.00 0.00 0.00 4.40
1617 5787 8.762645 TCTGAATATTTGTTCCTCTCTACATGT 58.237 33.333 2.69 2.69 0.00 3.21
1619 5789 9.606631 GTTCTGAATATTTGTTCCTCTCTACAT 57.393 33.333 0.00 0.00 0.00 2.29
1621 5791 9.660180 AAGTTCTGAATATTTGTTCCTCTCTAC 57.340 33.333 0.00 0.00 0.00 2.59
1630 5800 8.149647 TGGATGCAAAAGTTCTGAATATTTGTT 58.850 29.630 21.39 14.40 34.37 2.83
1644 5814 4.081752 TGTCTGTTGTTTGGATGCAAAAGT 60.082 37.500 14.43 0.00 33.07 2.66
1645 5815 4.431809 TGTCTGTTGTTTGGATGCAAAAG 58.568 39.130 14.43 8.24 32.67 2.27
1650 5820 3.066621 TGACTTGTCTGTTGTTTGGATGC 59.933 43.478 2.35 0.00 0.00 3.91
1651 5821 4.790766 GCTGACTTGTCTGTTGTTTGGATG 60.791 45.833 8.91 0.00 0.00 3.51
1652 5822 3.316308 GCTGACTTGTCTGTTGTTTGGAT 59.684 43.478 8.91 0.00 0.00 3.41
1653 5823 2.682856 GCTGACTTGTCTGTTGTTTGGA 59.317 45.455 8.91 0.00 0.00 3.53
1654 5824 2.423185 TGCTGACTTGTCTGTTGTTTGG 59.577 45.455 8.91 0.00 0.00 3.28
1655 5825 3.763097 TGCTGACTTGTCTGTTGTTTG 57.237 42.857 8.91 0.00 0.00 2.93
1656 5826 4.036027 CAGATGCTGACTTGTCTGTTGTTT 59.964 41.667 8.91 0.00 34.76 2.83
1657 5827 3.562973 CAGATGCTGACTTGTCTGTTGTT 59.437 43.478 8.91 0.00 34.76 2.83
1658 5828 3.136763 CAGATGCTGACTTGTCTGTTGT 58.863 45.455 8.91 0.00 34.76 3.32
1698 5883 1.270947 CCTGTAAACTGTACCGGCCAA 60.271 52.381 0.00 0.00 0.00 4.52
1699 5884 0.322322 CCTGTAAACTGTACCGGCCA 59.678 55.000 0.00 0.00 0.00 5.36
1701 5886 2.685850 ATCCTGTAAACTGTACCGGC 57.314 50.000 0.00 0.00 0.00 6.13
1702 5887 4.196626 TGAATCCTGTAAACTGTACCGG 57.803 45.455 0.00 0.00 0.00 5.28
1703 5888 4.034048 GCATGAATCCTGTAAACTGTACCG 59.966 45.833 0.00 0.00 0.00 4.02
1704 5889 5.065218 CAGCATGAATCCTGTAAACTGTACC 59.935 44.000 0.00 0.00 39.69 3.34
1705 5890 5.065218 CCAGCATGAATCCTGTAAACTGTAC 59.935 44.000 0.00 0.00 39.69 2.90
1706 5891 5.185454 CCAGCATGAATCCTGTAAACTGTA 58.815 41.667 0.00 0.00 39.69 2.74
1707 5892 4.012374 CCAGCATGAATCCTGTAAACTGT 58.988 43.478 0.00 0.00 39.69 3.55
1709 5894 4.307032 ACCAGCATGAATCCTGTAAACT 57.693 40.909 0.00 0.00 39.69 2.66
1710 5895 4.458989 TCAACCAGCATGAATCCTGTAAAC 59.541 41.667 0.00 0.00 39.69 2.01
1711 5896 4.661222 TCAACCAGCATGAATCCTGTAAA 58.339 39.130 0.00 0.00 39.69 2.01
1712 5897 4.264253 CTCAACCAGCATGAATCCTGTAA 58.736 43.478 0.00 0.00 39.69 2.41
1713 5898 3.877559 CTCAACCAGCATGAATCCTGTA 58.122 45.455 0.00 0.00 39.69 2.74
1714 5899 2.719739 CTCAACCAGCATGAATCCTGT 58.280 47.619 0.00 0.00 39.69 4.00
1726 5911 4.422073 TGTAATATGGGAGCTCAACCAG 57.578 45.455 17.19 0.00 40.67 4.00
1727 5912 4.411869 TCATGTAATATGGGAGCTCAACCA 59.588 41.667 17.19 15.04 41.76 3.67
1729 5914 7.365741 CAAATCATGTAATATGGGAGCTCAAC 58.634 38.462 17.19 8.43 0.00 3.18
1731 5916 6.005823 CCAAATCATGTAATATGGGAGCTCA 58.994 40.000 17.19 0.00 0.00 4.26
1732 5917 6.006449 ACCAAATCATGTAATATGGGAGCTC 58.994 40.000 4.71 4.71 32.21 4.09
1733 5918 5.771666 CACCAAATCATGTAATATGGGAGCT 59.228 40.000 0.00 0.00 32.21 4.09
1734 5919 5.536161 ACACCAAATCATGTAATATGGGAGC 59.464 40.000 0.00 0.00 32.21 4.70
1735 5920 7.587037 AACACCAAATCATGTAATATGGGAG 57.413 36.000 0.00 0.00 32.21 4.30
1737 5922 8.477256 AGAAAACACCAAATCATGTAATATGGG 58.523 33.333 0.00 0.00 32.21 4.00
1738 5923 9.520204 GAGAAAACACCAAATCATGTAATATGG 57.480 33.333 0.00 0.00 0.00 2.74
1742 5927 8.859090 TCAAGAGAAAACACCAAATCATGTAAT 58.141 29.630 0.00 0.00 0.00 1.89
1743 5928 8.134895 GTCAAGAGAAAACACCAAATCATGTAA 58.865 33.333 0.00 0.00 0.00 2.41
1752 5937 4.640201 CCTGAAGTCAAGAGAAAACACCAA 59.360 41.667 0.00 0.00 0.00 3.67
1768 5953 1.821088 AGGGGTTCTTGTCCTGAAGT 58.179 50.000 0.00 0.00 0.00 3.01
1783 5968 5.244626 CCTTTTAGGCATGATCATTAAGGGG 59.755 44.000 5.16 5.33 0.00 4.79
1786 5971 6.774656 AGTCCCTTTTAGGCATGATCATTAAG 59.225 38.462 5.16 0.00 32.73 1.85
1810 5995 9.766277 GTCTTTATTGCTGATTCAAGAGTTTAG 57.234 33.333 0.00 0.00 0.00 1.85
1831 6016 5.221165 CCTTGTTTATTGTCCAACCGTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
1836 6021 3.150767 TCCCTTGTTTATTGTCCAACCG 58.849 45.455 0.00 0.00 0.00 4.44
1840 6025 5.069781 CCACTTTTCCCTTGTTTATTGTCCA 59.930 40.000 0.00 0.00 0.00 4.02
1841 6026 5.510690 CCCACTTTTCCCTTGTTTATTGTCC 60.511 44.000 0.00 0.00 0.00 4.02
1846 6031 6.613679 TCTTTTCCCACTTTTCCCTTGTTTAT 59.386 34.615 0.00 0.00 0.00 1.40
1870 6055 5.796935 CAGCTGCAACAGTTACAATGTTATC 59.203 40.000 0.00 0.00 38.80 1.75
1873 6058 3.631686 TCAGCTGCAACAGTTACAATGTT 59.368 39.130 9.47 0.00 41.47 2.71
1883 6068 5.566623 CATTACTGTAATCAGCTGCAACAG 58.433 41.667 27.33 27.33 44.77 3.16
1884 6069 4.142622 GCATTACTGTAATCAGCTGCAACA 60.143 41.667 9.47 11.68 44.77 3.33
1887 6072 3.624410 CAGCATTACTGTAATCAGCTGCA 59.376 43.478 26.34 0.00 44.77 4.41
1888 6073 4.206698 CAGCATTACTGTAATCAGCTGC 57.793 45.455 26.34 20.27 44.77 5.25
1930 6126 5.576774 GCTGTGCTCAAGTAACTTTTTGTTT 59.423 36.000 0.00 0.00 39.89 2.83
1934 6130 4.981806 TGCTGTGCTCAAGTAACTTTTT 57.018 36.364 0.00 0.00 0.00 1.94
1945 6142 0.602106 GCTGAGACTTGCTGTGCTCA 60.602 55.000 0.00 0.00 34.32 4.26
1951 6148 2.493675 TGTAGTAGGCTGAGACTTGCTG 59.506 50.000 0.00 0.00 0.00 4.41
2047 6259 3.861840 TGATCCAGTTTCTGAATCGACC 58.138 45.455 0.00 0.00 32.44 4.79
2050 6262 5.847304 TCCTATGATCCAGTTTCTGAATCG 58.153 41.667 0.00 0.00 32.44 3.34
2067 6279 6.995091 CCTTAAGACCCTCAAAAGATCCTATG 59.005 42.308 3.36 0.00 0.00 2.23
2071 6283 5.045505 ACTCCTTAAGACCCTCAAAAGATCC 60.046 44.000 3.36 0.00 0.00 3.36
2072 6284 6.056090 ACTCCTTAAGACCCTCAAAAGATC 57.944 41.667 3.36 0.00 0.00 2.75
2073 6285 6.455690 AACTCCTTAAGACCCTCAAAAGAT 57.544 37.500 3.36 0.00 0.00 2.40
2074 6286 5.906772 AACTCCTTAAGACCCTCAAAAGA 57.093 39.130 3.36 0.00 0.00 2.52
2075 6287 7.175119 CCTTAAACTCCTTAAGACCCTCAAAAG 59.825 40.741 3.36 0.00 46.58 2.27
2076 6288 7.002276 CCTTAAACTCCTTAAGACCCTCAAAA 58.998 38.462 3.36 0.00 46.58 2.44
2083 6295 4.648651 TGCACCTTAAACTCCTTAAGACC 58.351 43.478 3.36 0.00 46.58 3.85
2128 6340 9.616156 AGGACGAATTATCATCGAGTATATACT 57.384 33.333 15.37 15.37 42.76 2.12
2146 6358 8.338072 AGTACTATAATCGATGAAGGACGAAT 57.662 34.615 0.00 0.00 41.65 3.34
2150 6362 6.586844 GCCAAGTACTATAATCGATGAAGGAC 59.413 42.308 0.00 3.91 0.00 3.85
2151 6363 6.266786 TGCCAAGTACTATAATCGATGAAGGA 59.733 38.462 0.00 0.00 0.00 3.36
2152 6364 6.455647 TGCCAAGTACTATAATCGATGAAGG 58.544 40.000 0.00 0.00 0.00 3.46
2205 6417 7.663905 TGCTTACCTATGTATGTGTCAGTTTTT 59.336 33.333 0.00 0.00 0.00 1.94
2208 6420 6.294361 TGCTTACCTATGTATGTGTCAGTT 57.706 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.