Multiple sequence alignment - TraesCS7A01G447700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G447700 chr7A 100.000 2491 0 0 1 2491 642255872 642253382 0.000000e+00 4601.0
1 TraesCS7A01G447700 chr7A 100.000 594 0 0 2856 3449 642253017 642252424 0.000000e+00 1098.0
2 TraesCS7A01G447700 chr7A 90.698 172 4 5 3289 3449 552452728 552452558 5.800000e-53 219.0
3 TraesCS7A01G447700 chr7A 90.964 166 4 4 3295 3449 684924564 684924729 2.700000e-51 213.0
4 TraesCS7A01G447700 chr7A 93.985 133 8 0 3317 3449 103107445 103107313 5.840000e-48 202.0
5 TraesCS7A01G447700 chr7A 96.429 84 3 0 1596 1679 642254193 642254110 4.640000e-29 139.0
6 TraesCS7A01G447700 chr7A 96.429 84 3 0 1680 1763 642254277 642254194 4.640000e-29 139.0
7 TraesCS7A01G447700 chr7D 94.323 2519 82 15 1 2491 556642006 556639521 0.000000e+00 3803.0
8 TraesCS7A01G447700 chr7D 89.286 224 14 3 2907 3121 556639361 556639139 4.390000e-69 272.0
9 TraesCS7A01G447700 chr7D 98.810 84 1 0 1596 1679 556640332 556640249 2.140000e-32 150.0
10 TraesCS7A01G447700 chr7D 96.429 84 3 0 1680 1763 556640416 556640333 4.640000e-29 139.0
11 TraesCS7A01G447700 chr7D 95.161 62 3 0 2856 2917 556639451 556639390 7.880000e-17 99.0
12 TraesCS7A01G447700 chr7B 97.210 1649 45 1 120 1768 604037086 604035439 0.000000e+00 2789.0
13 TraesCS7A01G447700 chr7B 95.461 727 33 0 1765 2491 604035400 604034674 0.000000e+00 1160.0
14 TraesCS7A01G447700 chr7B 79.521 752 138 9 866 1609 598017138 598016395 3.940000e-144 521.0
15 TraesCS7A01G447700 chr7B 95.041 121 4 2 1 121 604037235 604037117 4.540000e-44 189.0
16 TraesCS7A01G447700 chr7B 100.000 84 0 0 1596 1679 604035527 604035444 4.610000e-34 156.0
17 TraesCS7A01G447700 chr7B 96.429 84 3 0 1680 1763 604035611 604035528 4.640000e-29 139.0
18 TraesCS7A01G447700 chr7B 95.161 62 3 0 2856 2917 604034605 604034544 7.880000e-17 99.0
19 TraesCS7A01G447700 chr7B 100.000 31 0 0 3285 3315 122841588 122841618 1.340000e-04 58.4
20 TraesCS7A01G447700 chr1D 83.196 726 112 7 1765 2490 314574101 314574816 0.000000e+00 656.0
21 TraesCS7A01G447700 chr1B 84.000 675 102 3 1765 2439 426072275 426072943 0.000000e+00 643.0
22 TraesCS7A01G447700 chr1A 83.756 671 103 3 1765 2435 394852277 394852941 6.280000e-177 630.0
23 TraesCS7A01G447700 chr1A 86.441 177 10 4 3285 3449 96478891 96478717 7.600000e-42 182.0
24 TraesCS7A01G447700 chr6D 84.266 286 44 1 997 1281 12345170 12345455 9.430000e-71 278.0
25 TraesCS7A01G447700 chr4A 89.944 179 7 1 3282 3449 322128863 322129041 1.610000e-53 220.0
26 TraesCS7A01G447700 chr4A 88.827 179 8 7 3282 3449 322163249 322163426 3.490000e-50 209.0
27 TraesCS7A01G447700 chr4A 88.764 178 8 5 3283 3449 44442403 44442227 1.250000e-49 207.0
28 TraesCS7A01G447700 chr6A 95.489 133 6 0 3317 3449 303629843 303629975 2.700000e-51 213.0
29 TraesCS7A01G447700 chr2B 94.737 133 7 0 3317 3449 132096135 132096267 1.250000e-49 207.0
30 TraesCS7A01G447700 chr2A 94.737 133 7 0 3317 3449 591577492 591577360 1.250000e-49 207.0
31 TraesCS7A01G447700 chr2D 93.985 133 8 0 3317 3449 641883059 641882927 5.840000e-48 202.0
32 TraesCS7A01G447700 chr5A 86.932 176 11 7 3285 3449 431651477 431651303 1.630000e-43 187.0
33 TraesCS7A01G447700 chr5A 96.970 33 1 0 3285 3317 689176833 689176801 4.810000e-04 56.5
34 TraesCS7A01G447700 chr6B 100.000 31 0 0 3285 3315 250791443 250791413 1.340000e-04 58.4
35 TraesCS7A01G447700 chr6B 96.970 33 1 0 3285 3317 566802643 566802611 4.810000e-04 56.5
36 TraesCS7A01G447700 chr5D 97.059 34 1 0 3285 3318 40906906 40906939 1.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G447700 chr7A 642252424 642255872 3448 True 1494.250000 4601 98.214500 1 3449 4 chr7A.!!$R3 3448
1 TraesCS7A01G447700 chr7D 556639139 556642006 2867 True 892.600000 3803 94.801800 1 3121 5 chr7D.!!$R1 3120
2 TraesCS7A01G447700 chr7B 604034544 604037235 2691 True 755.333333 2789 96.550333 1 2917 6 chr7B.!!$R2 2916
3 TraesCS7A01G447700 chr7B 598016395 598017138 743 True 521.000000 521 79.521000 866 1609 1 chr7B.!!$R1 743
4 TraesCS7A01G447700 chr1D 314574101 314574816 715 False 656.000000 656 83.196000 1765 2490 1 chr1D.!!$F1 725
5 TraesCS7A01G447700 chr1B 426072275 426072943 668 False 643.000000 643 84.000000 1765 2439 1 chr1B.!!$F1 674
6 TraesCS7A01G447700 chr1A 394852277 394852941 664 False 630.000000 630 83.756000 1765 2435 1 chr1A.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 238 0.332632 ACTATGCATGCCAGGGTTGT 59.667 50.000 16.68 1.62 0.0 3.32 F
419 456 1.947456 GAAACAGTCGAGCCAAAACCT 59.053 47.619 0.00 0.00 0.0 3.50 F
856 893 3.134574 TGGGCTTGGTGTACTACAAAG 57.865 47.619 7.73 7.73 42.3 2.77 F
2328 2413 0.109532 TCACCACATTCGCCCTCAAA 59.890 50.000 0.00 0.00 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1090 1127 1.078528 TTCCTCCCTCTTGCTCCGA 59.921 57.895 0.00 0.00 0.00 4.55 R
1400 1443 2.449464 CATTTGACTCATTCAGGCCCA 58.551 47.619 0.00 0.00 34.94 5.36 R
2422 2507 2.121963 AGACACCTTGGGGGAGCA 60.122 61.111 0.00 0.00 38.76 4.26 R
3367 3500 0.249657 TTAAACGTGTACCGCGGGTT 60.250 50.000 31.76 20.13 41.96 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 96 5.614324 ATCTTGGATTTGTAGTCATCCGA 57.386 39.130 0.00 0.00 36.02 4.55
168 205 3.099905 TCTGTTCCCAGATGTCAGGTAG 58.900 50.000 0.00 0.00 42.80 3.18
201 238 0.332632 ACTATGCATGCCAGGGTTGT 59.667 50.000 16.68 1.62 0.00 3.32
419 456 1.947456 GAAACAGTCGAGCCAAAACCT 59.053 47.619 0.00 0.00 0.00 3.50
599 636 7.488322 GTCTGAGATGCTCTTACAGTTTCTAT 58.512 38.462 0.00 0.00 0.00 1.98
697 734 4.099881 ACACATTCATCTTTGCACTTTGGT 59.900 37.500 0.00 0.00 0.00 3.67
707 744 4.379339 TTGCACTTTGGTTAACCTTGTC 57.621 40.909 24.78 13.66 36.82 3.18
856 893 3.134574 TGGGCTTGGTGTACTACAAAG 57.865 47.619 7.73 7.73 42.30 2.77
940 977 8.999431 TGGAAGATTACTTGTATGAAGTTGTTC 58.001 33.333 0.00 0.00 36.39 3.18
992 1029 6.884295 TGTTTTCATATCCAGGTACTCAAAGG 59.116 38.462 0.00 0.00 34.60 3.11
1090 1127 3.710165 TCCTGAGCTTGATGATGACTCAT 59.290 43.478 0.00 0.00 44.93 2.90
1688 1731 2.424956 GGACCAAGGATGAAGTGAATGC 59.575 50.000 0.00 0.00 0.00 3.56
1741 1784 3.124297 CGGTGCTGAGAAGAAAGATGAAC 59.876 47.826 0.00 0.00 0.00 3.18
1881 1966 3.688673 CCTTTGGCTCAGCTTCTAAAGAG 59.311 47.826 14.02 5.30 0.00 2.85
1953 2038 5.424757 CCTTCTTTCAATATCGGTGGTACA 58.575 41.667 0.00 0.00 0.00 2.90
1986 2071 2.808543 GAGTTCTGTTCCATCGCTTGTT 59.191 45.455 0.00 0.00 0.00 2.83
2148 2233 2.467962 GCTAAAGCTGAACGTCCCC 58.532 57.895 0.00 0.00 38.21 4.81
2328 2413 0.109532 TCACCACATTCGCCCTCAAA 59.890 50.000 0.00 0.00 0.00 2.69
2406 2491 4.208686 AAGGCCTCGGACGCGATC 62.209 66.667 15.93 6.63 0.00 3.69
2488 2573 3.242413 GCGTGTTTCGATGATGCTTATGT 60.242 43.478 0.00 0.00 42.86 2.29
2913 3037 0.310543 TTTTGCATGCACGTGGTCTC 59.689 50.000 22.58 0.18 0.00 3.36
2928 3052 7.138736 CACGTGGTCTCTTGAACATTTAATTT 58.861 34.615 7.95 0.00 42.46 1.82
2986 3110 6.352222 CGAGGGAGACTATTAATTATGGGCAT 60.352 42.308 0.00 0.00 0.00 4.40
3001 3125 3.165071 TGGGCATCGATCTGAGCTATAA 58.835 45.455 0.00 0.00 0.00 0.98
3037 3168 2.015736 ATGAGTCATTCGTCAGTGGC 57.984 50.000 0.00 0.00 0.00 5.01
3066 3199 2.079158 TGAACTCTGTATTGCAGCAGC 58.921 47.619 0.00 0.00 44.66 5.25
3076 3209 1.111116 TTGCAGCAGCTTTCTTGCCT 61.111 50.000 1.76 0.00 42.74 4.75
3078 3211 1.080705 CAGCAGCTTTCTTGCCTGC 60.081 57.895 0.00 3.82 37.36 4.85
3079 3212 2.260743 GCAGCTTTCTTGCCTGCC 59.739 61.111 0.62 0.00 33.92 4.85
3082 3215 0.319297 CAGCTTTCTTGCCTGCCAAC 60.319 55.000 0.00 0.00 0.00 3.77
3085 3218 0.319297 CTTTCTTGCCTGCCAACTGC 60.319 55.000 0.00 0.00 41.77 4.40
3087 3220 2.599578 CTTGCCTGCCAACTGCCT 60.600 61.111 0.00 0.00 40.16 4.75
3094 3227 0.524862 CTGCCAACTGCCTGTTCATC 59.475 55.000 0.00 0.00 40.16 2.92
3118 3251 6.325028 TCTCCTCACATATCCCTTTTGTAGAG 59.675 42.308 0.00 0.00 0.00 2.43
3121 3254 6.043706 CCTCACATATCCCTTTTGTAGAGGAT 59.956 42.308 0.00 0.00 38.98 3.24
3122 3255 6.830912 TCACATATCCCTTTTGTAGAGGATG 58.169 40.000 0.65 0.00 35.76 3.51
3123 3256 6.615316 TCACATATCCCTTTTGTAGAGGATGA 59.385 38.462 0.65 0.00 35.76 2.92
3124 3257 7.293299 TCACATATCCCTTTTGTAGAGGATGAT 59.707 37.037 0.65 0.00 35.76 2.45
3125 3258 7.389884 CACATATCCCTTTTGTAGAGGATGATG 59.610 40.741 0.65 4.07 35.76 3.07
3126 3259 4.778213 TCCCTTTTGTAGAGGATGATGG 57.222 45.455 0.00 0.00 36.33 3.51
3127 3260 4.111577 TCCCTTTTGTAGAGGATGATGGT 58.888 43.478 0.00 0.00 36.33 3.55
3128 3261 4.540099 TCCCTTTTGTAGAGGATGATGGTT 59.460 41.667 0.00 0.00 36.33 3.67
3129 3262 5.015178 TCCCTTTTGTAGAGGATGATGGTTT 59.985 40.000 0.00 0.00 36.33 3.27
3130 3263 5.716703 CCCTTTTGTAGAGGATGATGGTTTT 59.283 40.000 0.00 0.00 36.33 2.43
3131 3264 6.211384 CCCTTTTGTAGAGGATGATGGTTTTT 59.789 38.462 0.00 0.00 36.33 1.94
3132 3265 7.396055 CCCTTTTGTAGAGGATGATGGTTTTTA 59.604 37.037 0.00 0.00 36.33 1.52
3133 3266 8.971073 CCTTTTGTAGAGGATGATGGTTTTTAT 58.029 33.333 0.00 0.00 36.33 1.40
3141 3274 9.872684 AGAGGATGATGGTTTTTATATCATTGT 57.127 29.630 0.00 0.00 40.56 2.71
3142 3275 9.903682 GAGGATGATGGTTTTTATATCATTGTG 57.096 33.333 0.00 0.00 40.56 3.33
3143 3276 8.863086 AGGATGATGGTTTTTATATCATTGTGG 58.137 33.333 0.00 0.00 40.56 4.17
3144 3277 8.641541 GGATGATGGTTTTTATATCATTGTGGT 58.358 33.333 0.00 0.00 40.56 4.16
3147 3280 9.868277 TGATGGTTTTTATATCATTGTGGTTTC 57.132 29.630 0.00 0.00 0.00 2.78
3148 3281 9.868277 GATGGTTTTTATATCATTGTGGTTTCA 57.132 29.630 0.00 0.00 0.00 2.69
3149 3282 9.651913 ATGGTTTTTATATCATTGTGGTTTCAC 57.348 29.630 0.00 0.00 43.87 3.18
3150 3283 8.091449 TGGTTTTTATATCATTGTGGTTTCACC 58.909 33.333 0.00 0.00 42.98 4.02
3151 3284 8.311109 GGTTTTTATATCATTGTGGTTTCACCT 58.689 33.333 0.00 0.00 42.98 4.00
3152 3285 9.705290 GTTTTTATATCATTGTGGTTTCACCTT 57.295 29.630 0.00 0.00 42.98 3.50
3154 3287 9.703892 TTTTATATCATTGTGGTTTCACCTTTG 57.296 29.630 0.00 0.00 42.98 2.77
3155 3288 3.451141 TCATTGTGGTTTCACCTTTGC 57.549 42.857 0.00 0.00 42.98 3.68
3156 3289 2.762887 TCATTGTGGTTTCACCTTTGCA 59.237 40.909 0.00 0.00 42.98 4.08
3157 3290 3.387374 TCATTGTGGTTTCACCTTTGCAT 59.613 39.130 0.00 0.00 42.98 3.96
3158 3291 4.586421 TCATTGTGGTTTCACCTTTGCATA 59.414 37.500 0.00 0.00 42.98 3.14
3159 3292 4.314740 TTGTGGTTTCACCTTTGCATAC 57.685 40.909 0.00 0.00 42.98 2.39
3160 3293 3.561143 TGTGGTTTCACCTTTGCATACT 58.439 40.909 0.00 0.00 42.98 2.12
3161 3294 3.957497 TGTGGTTTCACCTTTGCATACTT 59.043 39.130 0.00 0.00 42.98 2.24
3162 3295 4.037446 TGTGGTTTCACCTTTGCATACTTC 59.963 41.667 0.00 0.00 42.98 3.01
3163 3296 4.037446 GTGGTTTCACCTTTGCATACTTCA 59.963 41.667 0.00 0.00 39.58 3.02
3164 3297 4.832266 TGGTTTCACCTTTGCATACTTCAT 59.168 37.500 0.00 0.00 39.58 2.57
3165 3298 5.304101 TGGTTTCACCTTTGCATACTTCATT 59.696 36.000 0.00 0.00 39.58 2.57
3166 3299 5.634859 GGTTTCACCTTTGCATACTTCATTG 59.365 40.000 0.00 0.00 34.73 2.82
3167 3300 5.389859 TTCACCTTTGCATACTTCATTGG 57.610 39.130 0.00 0.00 0.00 3.16
3168 3301 4.661222 TCACCTTTGCATACTTCATTGGA 58.339 39.130 0.00 0.00 0.00 3.53
3169 3302 4.701651 TCACCTTTGCATACTTCATTGGAG 59.298 41.667 0.00 0.00 0.00 3.86
3170 3303 4.019174 ACCTTTGCATACTTCATTGGAGG 58.981 43.478 0.00 0.00 0.00 4.30
3171 3304 4.019174 CCTTTGCATACTTCATTGGAGGT 58.981 43.478 0.00 0.00 37.15 3.85
3172 3305 4.463891 CCTTTGCATACTTCATTGGAGGTT 59.536 41.667 0.00 0.00 34.80 3.50
3173 3306 5.652014 CCTTTGCATACTTCATTGGAGGTTA 59.348 40.000 0.00 0.00 34.80 2.85
3174 3307 6.404734 CCTTTGCATACTTCATTGGAGGTTAC 60.405 42.308 0.00 0.00 34.80 2.50
3175 3308 5.172687 TGCATACTTCATTGGAGGTTACA 57.827 39.130 0.00 0.00 34.80 2.41
3176 3309 4.941263 TGCATACTTCATTGGAGGTTACAC 59.059 41.667 0.00 0.00 34.80 2.90
3177 3310 4.034048 GCATACTTCATTGGAGGTTACACG 59.966 45.833 0.00 0.00 34.80 4.49
3178 3311 5.416083 CATACTTCATTGGAGGTTACACGA 58.584 41.667 0.00 0.00 34.80 4.35
3179 3312 3.926616 ACTTCATTGGAGGTTACACGAG 58.073 45.455 0.00 0.00 27.15 4.18
3180 3313 3.576982 ACTTCATTGGAGGTTACACGAGA 59.423 43.478 0.00 0.00 27.15 4.04
3181 3314 4.223032 ACTTCATTGGAGGTTACACGAGAT 59.777 41.667 0.00 0.00 27.15 2.75
3182 3315 4.386867 TCATTGGAGGTTACACGAGATC 57.613 45.455 0.00 0.00 0.00 2.75
3183 3316 3.767131 TCATTGGAGGTTACACGAGATCA 59.233 43.478 0.00 0.00 0.00 2.92
3184 3317 4.221924 TCATTGGAGGTTACACGAGATCAA 59.778 41.667 0.00 0.00 0.00 2.57
3185 3318 4.610605 TTGGAGGTTACACGAGATCAAA 57.389 40.909 0.00 0.00 0.00 2.69
3186 3319 4.819105 TGGAGGTTACACGAGATCAAAT 57.181 40.909 0.00 0.00 0.00 2.32
3187 3320 4.503910 TGGAGGTTACACGAGATCAAATG 58.496 43.478 0.00 0.00 0.00 2.32
3188 3321 4.221924 TGGAGGTTACACGAGATCAAATGA 59.778 41.667 0.00 0.00 0.00 2.57
3189 3322 4.567159 GGAGGTTACACGAGATCAAATGAC 59.433 45.833 0.00 0.00 0.00 3.06
3190 3323 5.407407 AGGTTACACGAGATCAAATGACT 57.593 39.130 0.00 0.00 0.00 3.41
3191 3324 5.171476 AGGTTACACGAGATCAAATGACTG 58.829 41.667 0.00 0.00 0.00 3.51
3192 3325 5.047306 AGGTTACACGAGATCAAATGACTGA 60.047 40.000 0.00 0.00 0.00 3.41
3193 3326 5.289675 GGTTACACGAGATCAAATGACTGAG 59.710 44.000 0.00 0.00 0.00 3.35
3194 3327 4.527509 ACACGAGATCAAATGACTGAGT 57.472 40.909 0.00 0.00 0.00 3.41
3195 3328 5.644977 ACACGAGATCAAATGACTGAGTA 57.355 39.130 0.00 0.00 0.00 2.59
3196 3329 6.025749 ACACGAGATCAAATGACTGAGTAA 57.974 37.500 0.00 0.00 0.00 2.24
3197 3330 6.634805 ACACGAGATCAAATGACTGAGTAAT 58.365 36.000 0.00 0.00 0.00 1.89
3198 3331 6.754209 ACACGAGATCAAATGACTGAGTAATC 59.246 38.462 0.00 0.00 0.00 1.75
3199 3332 6.977502 CACGAGATCAAATGACTGAGTAATCT 59.022 38.462 0.00 0.00 0.00 2.40
3200 3333 7.167302 CACGAGATCAAATGACTGAGTAATCTC 59.833 40.741 0.00 0.00 40.79 2.75
3201 3334 7.068103 ACGAGATCAAATGACTGAGTAATCTCT 59.932 37.037 0.00 2.21 40.98 3.10
3202 3335 7.920151 CGAGATCAAATGACTGAGTAATCTCTT 59.080 37.037 0.00 0.00 40.98 2.85
3203 3336 9.598517 GAGATCAAATGACTGAGTAATCTCTTT 57.401 33.333 0.00 0.00 40.98 2.52
3204 3337 9.381033 AGATCAAATGACTGAGTAATCTCTTTG 57.619 33.333 0.00 0.00 40.98 2.77
3205 3338 7.369803 TCAAATGACTGAGTAATCTCTTTGC 57.630 36.000 0.00 0.00 40.98 3.68
3206 3339 6.091305 TCAAATGACTGAGTAATCTCTTTGCG 59.909 38.462 0.00 0.00 40.98 4.85
3207 3340 3.254060 TGACTGAGTAATCTCTTTGCGC 58.746 45.455 0.00 0.00 40.98 6.09
3208 3341 2.605366 GACTGAGTAATCTCTTTGCGCC 59.395 50.000 4.18 0.00 40.98 6.53
3209 3342 2.234908 ACTGAGTAATCTCTTTGCGCCT 59.765 45.455 4.18 0.00 40.98 5.52
3210 3343 3.265791 CTGAGTAATCTCTTTGCGCCTT 58.734 45.455 4.18 0.00 40.98 4.35
3211 3344 3.262420 TGAGTAATCTCTTTGCGCCTTC 58.738 45.455 4.18 0.00 40.98 3.46
3212 3345 3.055819 TGAGTAATCTCTTTGCGCCTTCT 60.056 43.478 4.18 0.00 40.98 2.85
3213 3346 3.265791 AGTAATCTCTTTGCGCCTTCTG 58.734 45.455 4.18 0.00 0.00 3.02
3214 3347 2.479566 AATCTCTTTGCGCCTTCTGA 57.520 45.000 4.18 0.00 0.00 3.27
3215 3348 2.706339 ATCTCTTTGCGCCTTCTGAT 57.294 45.000 4.18 0.27 0.00 2.90
3216 3349 2.479566 TCTCTTTGCGCCTTCTGATT 57.520 45.000 4.18 0.00 0.00 2.57
3217 3350 2.783135 TCTCTTTGCGCCTTCTGATTT 58.217 42.857 4.18 0.00 0.00 2.17
3218 3351 3.149196 TCTCTTTGCGCCTTCTGATTTT 58.851 40.909 4.18 0.00 0.00 1.82
3219 3352 3.569701 TCTCTTTGCGCCTTCTGATTTTT 59.430 39.130 4.18 0.00 0.00 1.94
3220 3353 4.759693 TCTCTTTGCGCCTTCTGATTTTTA 59.240 37.500 4.18 0.00 0.00 1.52
3221 3354 5.415701 TCTCTTTGCGCCTTCTGATTTTTAT 59.584 36.000 4.18 0.00 0.00 1.40
3222 3355 6.024552 TCTTTGCGCCTTCTGATTTTTATT 57.975 33.333 4.18 0.00 0.00 1.40
3223 3356 6.454795 TCTTTGCGCCTTCTGATTTTTATTT 58.545 32.000 4.18 0.00 0.00 1.40
3224 3357 6.586082 TCTTTGCGCCTTCTGATTTTTATTTC 59.414 34.615 4.18 0.00 0.00 2.17
3225 3358 4.743493 TGCGCCTTCTGATTTTTATTTCC 58.257 39.130 4.18 0.00 0.00 3.13
3226 3359 4.462483 TGCGCCTTCTGATTTTTATTTCCT 59.538 37.500 4.18 0.00 0.00 3.36
3227 3360 4.800471 GCGCCTTCTGATTTTTATTTCCTG 59.200 41.667 0.00 0.00 0.00 3.86
3228 3361 4.800471 CGCCTTCTGATTTTTATTTCCTGC 59.200 41.667 0.00 0.00 0.00 4.85
3229 3362 4.800471 GCCTTCTGATTTTTATTTCCTGCG 59.200 41.667 0.00 0.00 0.00 5.18
3230 3363 4.800471 CCTTCTGATTTTTATTTCCTGCGC 59.200 41.667 0.00 0.00 0.00 6.09
3231 3364 5.384063 TTCTGATTTTTATTTCCTGCGCA 57.616 34.783 10.98 10.98 0.00 6.09
3232 3365 5.384063 TCTGATTTTTATTTCCTGCGCAA 57.616 34.783 13.05 0.00 0.00 4.85
3233 3366 5.777802 TCTGATTTTTATTTCCTGCGCAAA 58.222 33.333 13.05 2.84 0.00 3.68
3234 3367 6.219473 TCTGATTTTTATTTCCTGCGCAAAA 58.781 32.000 13.05 11.00 0.00 2.44
3235 3368 6.873076 TCTGATTTTTATTTCCTGCGCAAAAT 59.127 30.769 20.44 20.44 0.00 1.82
3236 3369 6.829703 TGATTTTTATTTCCTGCGCAAAATG 58.170 32.000 23.77 8.62 0.00 2.32
3237 3370 5.604010 TTTTTATTTCCTGCGCAAAATGG 57.396 34.783 23.77 16.73 0.00 3.16
3238 3371 3.951775 TTATTTCCTGCGCAAAATGGT 57.048 38.095 23.77 7.19 0.00 3.55
3239 3372 2.083167 ATTTCCTGCGCAAAATGGTG 57.917 45.000 17.04 1.60 0.00 4.17
3240 3373 0.599728 TTTCCTGCGCAAAATGGTGC 60.600 50.000 13.05 0.00 44.35 5.01
3241 3374 1.462731 TTCCTGCGCAAAATGGTGCT 61.463 50.000 13.05 0.00 44.39 4.40
3242 3375 1.444895 CCTGCGCAAAATGGTGCTC 60.445 57.895 13.05 0.00 44.39 4.26
3243 3376 1.444895 CTGCGCAAAATGGTGCTCC 60.445 57.895 13.05 0.00 44.39 4.70
3244 3377 2.125952 GCGCAAAATGGTGCTCCC 60.126 61.111 0.30 0.00 42.62 4.30
3245 3378 2.639327 GCGCAAAATGGTGCTCCCT 61.639 57.895 0.30 0.00 42.62 4.20
3246 3379 1.508088 CGCAAAATGGTGCTCCCTC 59.492 57.895 1.59 0.00 42.62 4.30
3247 3380 1.893062 GCAAAATGGTGCTCCCTCC 59.107 57.895 1.59 0.00 41.51 4.30
3248 3381 0.899717 GCAAAATGGTGCTCCCTCCA 60.900 55.000 1.59 0.00 41.51 3.86
3249 3382 1.856629 CAAAATGGTGCTCCCTCCAT 58.143 50.000 1.59 0.00 44.88 3.41
3252 3385 3.602104 ATGGTGCTCCCTCCATTTG 57.398 52.632 1.59 0.00 41.33 2.32
3253 3386 0.032813 ATGGTGCTCCCTCCATTTGG 60.033 55.000 1.59 0.00 41.33 3.28
3254 3387 1.139498 TGGTGCTCCCTCCATTTGGA 61.139 55.000 1.59 0.00 43.08 3.53
3271 3404 9.959721 TCCATTTGGAGTATTTATATAAGGCTC 57.040 33.333 0.00 11.43 39.78 4.70
3272 3405 9.739276 CCATTTGGAGTATTTATATAAGGCTCA 57.261 33.333 17.19 4.47 37.39 4.26
3276 3409 9.725019 TTGGAGTATTTATATAAGGCTCACATG 57.275 33.333 17.19 0.00 0.00 3.21
3277 3410 8.880244 TGGAGTATTTATATAAGGCTCACATGT 58.120 33.333 17.19 0.00 0.00 3.21
3280 3413 9.856488 AGTATTTATATAAGGCTCACATGTACG 57.144 33.333 0.00 0.00 0.00 3.67
3281 3414 9.635520 GTATTTATATAAGGCTCACATGTACGT 57.364 33.333 0.00 0.00 0.00 3.57
3286 3419 8.758633 ATATAAGGCTCACATGTACGTAAATC 57.241 34.615 0.00 0.00 0.00 2.17
3287 3420 4.737855 AGGCTCACATGTACGTAAATCT 57.262 40.909 0.00 0.00 0.00 2.40
3288 3421 5.086104 AGGCTCACATGTACGTAAATCTT 57.914 39.130 0.00 0.00 0.00 2.40
3289 3422 6.216801 AGGCTCACATGTACGTAAATCTTA 57.783 37.500 0.00 0.00 0.00 2.10
3290 3423 6.817184 AGGCTCACATGTACGTAAATCTTAT 58.183 36.000 0.00 0.00 0.00 1.73
3291 3424 6.924060 AGGCTCACATGTACGTAAATCTTATC 59.076 38.462 0.00 0.00 0.00 1.75
3292 3425 6.924060 GGCTCACATGTACGTAAATCTTATCT 59.076 38.462 0.00 0.00 0.00 1.98
3293 3426 7.438459 GGCTCACATGTACGTAAATCTTATCTT 59.562 37.037 0.00 0.00 0.00 2.40
3294 3427 9.459640 GCTCACATGTACGTAAATCTTATCTTA 57.540 33.333 0.00 0.00 0.00 2.10
3317 3450 9.408069 CTTATCTTACCTACTAATAAAGCACGG 57.592 37.037 0.00 0.00 0.00 4.94
3318 3451 6.780457 TCTTACCTACTAATAAAGCACGGT 57.220 37.500 0.00 0.00 0.00 4.83
3319 3452 6.799512 TCTTACCTACTAATAAAGCACGGTC 58.200 40.000 0.00 0.00 0.00 4.79
3320 3453 4.037858 ACCTACTAATAAAGCACGGTCG 57.962 45.455 0.00 0.00 0.00 4.79
3321 3454 3.445096 ACCTACTAATAAAGCACGGTCGT 59.555 43.478 0.00 0.00 0.00 4.34
3322 3455 4.040376 CCTACTAATAAAGCACGGTCGTC 58.960 47.826 0.00 0.00 0.00 4.20
3323 3456 3.863142 ACTAATAAAGCACGGTCGTCT 57.137 42.857 0.00 0.00 0.00 4.18
3324 3457 3.508762 ACTAATAAAGCACGGTCGTCTG 58.491 45.455 0.00 0.00 0.00 3.51
3325 3458 2.450609 AATAAAGCACGGTCGTCTGT 57.549 45.000 0.00 0.00 0.00 3.41
3326 3459 1.992170 ATAAAGCACGGTCGTCTGTC 58.008 50.000 0.00 0.00 0.00 3.51
3327 3460 0.669619 TAAAGCACGGTCGTCTGTCA 59.330 50.000 0.00 0.00 0.00 3.58
3328 3461 0.874607 AAAGCACGGTCGTCTGTCAC 60.875 55.000 0.00 0.00 0.00 3.67
3338 3471 2.503943 CGTCTGTCACGCCATTTTAC 57.496 50.000 0.00 0.00 42.87 2.01
3339 3472 1.795872 CGTCTGTCACGCCATTTTACA 59.204 47.619 0.00 0.00 42.87 2.41
3340 3473 2.222213 CGTCTGTCACGCCATTTTACAA 59.778 45.455 0.00 0.00 42.87 2.41
3341 3474 3.303461 CGTCTGTCACGCCATTTTACAAA 60.303 43.478 0.00 0.00 42.87 2.83
3342 3475 4.612712 CGTCTGTCACGCCATTTTACAAAT 60.613 41.667 0.00 0.00 42.87 2.32
3343 3476 5.390040 CGTCTGTCACGCCATTTTACAAATA 60.390 40.000 0.00 0.00 42.87 1.40
3344 3477 6.375377 GTCTGTCACGCCATTTTACAAATAA 58.625 36.000 0.00 0.00 0.00 1.40
3345 3478 6.858993 GTCTGTCACGCCATTTTACAAATAAA 59.141 34.615 0.00 0.00 0.00 1.40
3346 3479 6.858993 TCTGTCACGCCATTTTACAAATAAAC 59.141 34.615 0.00 0.00 29.77 2.01
3347 3480 5.921408 TGTCACGCCATTTTACAAATAAACC 59.079 36.000 0.00 0.00 29.77 3.27
3348 3481 5.346551 GTCACGCCATTTTACAAATAAACCC 59.653 40.000 0.00 0.00 29.77 4.11
3349 3482 4.627900 CACGCCATTTTACAAATAAACCCC 59.372 41.667 0.00 0.00 29.77 4.95
3350 3483 4.528987 ACGCCATTTTACAAATAAACCCCT 59.471 37.500 0.00 0.00 29.77 4.79
3351 3484 5.106442 CGCCATTTTACAAATAAACCCCTC 58.894 41.667 0.00 0.00 29.77 4.30
3352 3485 5.336849 CGCCATTTTACAAATAAACCCCTCA 60.337 40.000 0.00 0.00 29.77 3.86
3353 3486 6.106003 GCCATTTTACAAATAAACCCCTCAG 58.894 40.000 0.00 0.00 29.77 3.35
3354 3487 6.295632 GCCATTTTACAAATAAACCCCTCAGT 60.296 38.462 0.00 0.00 29.77 3.41
3355 3488 7.676004 CCATTTTACAAATAAACCCCTCAGTT 58.324 34.615 0.00 0.00 29.77 3.16
3356 3489 8.154203 CCATTTTACAAATAAACCCCTCAGTTT 58.846 33.333 0.00 0.00 42.47 2.66
3357 3490 9.554395 CATTTTACAAATAAACCCCTCAGTTTT 57.446 29.630 0.00 0.00 40.38 2.43
3358 3491 9.772973 ATTTTACAAATAAACCCCTCAGTTTTC 57.227 29.630 0.00 0.00 40.38 2.29
3359 3492 8.541899 TTTACAAATAAACCCCTCAGTTTTCT 57.458 30.769 0.00 0.00 40.38 2.52
3361 3494 5.897250 ACAAATAAACCCCTCAGTTTTCTGT 59.103 36.000 0.00 0.00 46.98 3.41
3362 3495 7.064229 ACAAATAAACCCCTCAGTTTTCTGTA 58.936 34.615 0.00 0.00 46.98 2.74
3363 3496 7.562088 ACAAATAAACCCCTCAGTTTTCTGTAA 59.438 33.333 0.00 0.00 46.98 2.41
3364 3497 8.417884 CAAATAAACCCCTCAGTTTTCTGTAAA 58.582 33.333 0.00 0.00 46.98 2.01
3365 3498 8.721133 AATAAACCCCTCAGTTTTCTGTAAAT 57.279 30.769 0.00 0.00 46.98 1.40
3366 3499 6.650427 AAACCCCTCAGTTTTCTGTAAATC 57.350 37.500 0.00 0.00 46.98 2.17
3367 3500 5.319043 ACCCCTCAGTTTTCTGTAAATCA 57.681 39.130 0.00 0.00 46.98 2.57
3368 3501 5.701224 ACCCCTCAGTTTTCTGTAAATCAA 58.299 37.500 0.00 0.00 46.98 2.57
3369 3502 5.535030 ACCCCTCAGTTTTCTGTAAATCAAC 59.465 40.000 0.00 0.00 46.98 3.18
3370 3503 5.048013 CCCCTCAGTTTTCTGTAAATCAACC 60.048 44.000 0.00 0.00 46.98 3.77
3371 3504 5.048013 CCCTCAGTTTTCTGTAAATCAACCC 60.048 44.000 0.00 0.00 46.98 4.11
3372 3505 5.334879 CCTCAGTTTTCTGTAAATCAACCCG 60.335 44.000 0.00 0.00 46.98 5.28
3373 3506 4.023536 TCAGTTTTCTGTAAATCAACCCGC 60.024 41.667 0.00 0.00 46.98 6.13
3374 3507 3.058501 AGTTTTCTGTAAATCAACCCGCG 60.059 43.478 0.00 0.00 0.00 6.46
3375 3508 1.444836 TTCTGTAAATCAACCCGCGG 58.555 50.000 21.04 21.04 0.00 6.46
3376 3509 0.322322 TCTGTAAATCAACCCGCGGT 59.678 50.000 26.12 9.63 37.65 5.68
3377 3510 1.549620 TCTGTAAATCAACCCGCGGTA 59.450 47.619 26.12 4.63 33.12 4.02
3378 3511 1.662122 CTGTAAATCAACCCGCGGTAC 59.338 52.381 26.12 17.79 33.12 3.34
3379 3512 1.001746 TGTAAATCAACCCGCGGTACA 59.998 47.619 26.12 20.22 33.12 2.90
3380 3513 1.394572 GTAAATCAACCCGCGGTACAC 59.605 52.381 26.12 6.27 33.12 2.90
3382 3515 2.438951 AATCAACCCGCGGTACACGT 62.439 55.000 26.12 11.69 46.52 4.49
3383 3516 2.438951 ATCAACCCGCGGTACACGTT 62.439 55.000 26.12 17.48 46.52 3.99
3384 3517 2.108771 AACCCGCGGTACACGTTT 59.891 55.556 26.12 2.08 46.52 3.60
3385 3518 0.943359 CAACCCGCGGTACACGTTTA 60.943 55.000 26.12 0.00 46.52 2.01
3386 3519 0.249657 AACCCGCGGTACACGTTTAA 60.250 50.000 26.12 0.00 46.52 1.52
3387 3520 0.667184 ACCCGCGGTACACGTTTAAG 60.667 55.000 26.12 6.21 46.52 1.85
3388 3521 0.667184 CCCGCGGTACACGTTTAAGT 60.667 55.000 26.12 0.00 46.52 2.24
3389 3522 1.139163 CCGCGGTACACGTTTAAGTT 58.861 50.000 19.50 0.00 46.52 2.66
3390 3523 1.526464 CCGCGGTACACGTTTAAGTTT 59.474 47.619 19.50 0.00 46.52 2.66
3391 3524 2.032979 CCGCGGTACACGTTTAAGTTTT 60.033 45.455 19.50 0.00 46.52 2.43
3392 3525 3.183373 CCGCGGTACACGTTTAAGTTTTA 59.817 43.478 19.50 0.00 46.52 1.52
3393 3526 4.318404 CCGCGGTACACGTTTAAGTTTTAA 60.318 41.667 19.50 0.00 46.52 1.52
3394 3527 4.602740 CGCGGTACACGTTTAAGTTTTAAC 59.397 41.667 0.00 0.00 46.52 2.01
3395 3528 4.903585 GCGGTACACGTTTAAGTTTTAACC 59.096 41.667 0.00 0.00 46.52 2.85
3396 3529 5.503194 GCGGTACACGTTTAAGTTTTAACCA 60.503 40.000 0.00 0.00 46.52 3.67
3397 3530 6.481984 CGGTACACGTTTAAGTTTTAACCAA 58.518 36.000 0.00 0.00 37.93 3.67
3398 3531 6.963805 CGGTACACGTTTAAGTTTTAACCAAA 59.036 34.615 0.00 0.00 37.93 3.28
3399 3532 7.045031 CGGTACACGTTTAAGTTTTAACCAAAC 60.045 37.037 0.00 8.99 40.57 2.93
3400 3533 7.219917 GGTACACGTTTAAGTTTTAACCAAACC 59.780 37.037 0.00 0.00 45.42 3.27
3401 3534 5.799435 ACACGTTTAAGTTTTAACCAAACCG 59.201 36.000 11.63 10.03 45.42 4.44
3402 3535 5.799435 CACGTTTAAGTTTTAACCAAACCGT 59.201 36.000 11.63 10.42 45.42 4.83
3403 3536 6.307558 CACGTTTAAGTTTTAACCAAACCGTT 59.692 34.615 11.63 0.00 45.42 4.44
3404 3537 6.865726 ACGTTTAAGTTTTAACCAAACCGTTT 59.134 30.769 11.63 0.00 45.42 3.60
3405 3538 7.383572 ACGTTTAAGTTTTAACCAAACCGTTTT 59.616 29.630 0.00 0.00 45.42 2.43
3406 3539 8.219769 CGTTTAAGTTTTAACCAAACCGTTTTT 58.780 29.630 0.00 0.00 45.42 1.94
3428 3561 6.405278 TTTCTCATTTTCTCAGAAAACCCC 57.595 37.500 14.95 0.00 34.04 4.95
3429 3562 4.407365 TCTCATTTTCTCAGAAAACCCCC 58.593 43.478 14.95 0.00 0.00 5.40
3430 3563 4.106341 TCTCATTTTCTCAGAAAACCCCCT 59.894 41.667 14.95 0.00 0.00 4.79
3431 3564 4.151883 TCATTTTCTCAGAAAACCCCCTG 58.848 43.478 14.95 9.10 0.00 4.45
3432 3565 3.963476 TTTTCTCAGAAAACCCCCTGA 57.037 42.857 8.60 0.00 37.77 3.86
3433 3566 2.951229 TTCTCAGAAAACCCCCTGAC 57.049 50.000 0.00 0.00 35.73 3.51
3434 3567 0.685097 TCTCAGAAAACCCCCTGACG 59.315 55.000 0.00 0.00 35.73 4.35
3435 3568 0.396811 CTCAGAAAACCCCCTGACGT 59.603 55.000 0.00 0.00 35.73 4.34
3436 3569 0.841289 TCAGAAAACCCCCTGACGTT 59.159 50.000 0.00 0.00 34.78 3.99
3437 3570 1.213430 TCAGAAAACCCCCTGACGTTT 59.787 47.619 0.00 0.00 34.78 3.60
3438 3571 2.028876 CAGAAAACCCCCTGACGTTTT 58.971 47.619 0.00 0.00 43.12 2.43
3439 3572 3.117963 TCAGAAAACCCCCTGACGTTTTA 60.118 43.478 0.00 0.00 41.12 1.52
3440 3573 3.252458 CAGAAAACCCCCTGACGTTTTAG 59.748 47.826 0.00 0.00 41.12 1.85
3441 3574 3.136992 AGAAAACCCCCTGACGTTTTAGA 59.863 43.478 0.00 0.00 41.12 2.10
3442 3575 2.556144 AACCCCCTGACGTTTTAGAC 57.444 50.000 0.00 0.00 0.00 2.59
3443 3576 1.426751 ACCCCCTGACGTTTTAGACA 58.573 50.000 0.00 0.00 0.00 3.41
3444 3577 1.770061 ACCCCCTGACGTTTTAGACAA 59.230 47.619 0.00 0.00 0.00 3.18
3445 3578 2.374170 ACCCCCTGACGTTTTAGACAAT 59.626 45.455 0.00 0.00 0.00 2.71
3446 3579 3.007635 CCCCCTGACGTTTTAGACAATC 58.992 50.000 0.00 0.00 0.00 2.67
3447 3580 3.558321 CCCCCTGACGTTTTAGACAATCA 60.558 47.826 0.00 0.00 0.00 2.57
3448 3581 4.069304 CCCCTGACGTTTTAGACAATCAA 58.931 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 205 3.071479 TGCATAGTTCTTTCCGTCCAAC 58.929 45.455 0.00 0.00 0.00 3.77
300 337 5.008019 CACAATATGCCTAGGTGTGTGAATC 59.992 44.000 17.35 0.00 37.64 2.52
516 553 1.340405 ACAACCATCCTCATCAGTGGC 60.340 52.381 0.00 0.00 35.11 5.01
599 636 1.398692 GGCAGTTTCCCAACTTCACA 58.601 50.000 0.00 0.00 40.66 3.58
697 734 6.119536 CCATAATGTAGGCAGACAAGGTTAA 58.880 40.000 0.00 0.00 31.83 2.01
707 744 6.322201 AGAATGGAAAACCATAATGTAGGCAG 59.678 38.462 2.10 0.00 0.00 4.85
731 768 3.668447 AGAAGACAACAGGCATACACAG 58.332 45.455 0.00 0.00 0.00 3.66
856 893 2.627515 TGACTATGCAGGCTCCATTC 57.372 50.000 0.00 0.00 0.00 2.67
940 977 9.515020 TCAGAACAAACTAAGCAAAAAGTAATG 57.485 29.630 0.00 0.00 0.00 1.90
947 984 8.770438 AAAACATCAGAACAAACTAAGCAAAA 57.230 26.923 0.00 0.00 0.00 2.44
992 1029 1.001406 CCTCATCCGCCATCTTAGGAC 59.999 57.143 0.00 0.00 36.81 3.85
1090 1127 1.078528 TTCCTCCCTCTTGCTCCGA 59.921 57.895 0.00 0.00 0.00 4.55
1400 1443 2.449464 CATTTGACTCATTCAGGCCCA 58.551 47.619 0.00 0.00 34.94 5.36
1688 1731 5.188434 TGCTTTTATCTTCATCTCCACCTG 58.812 41.667 0.00 0.00 0.00 4.00
1953 2038 2.718563 ACAGAACTCCCGTTGTTGTTT 58.281 42.857 0.00 0.00 32.39 2.83
2328 2413 2.619849 CCTGATGCCAGTGTCCTTGAAT 60.620 50.000 0.00 0.00 38.74 2.57
2406 2491 4.760047 CACTCGGGCGTCTTGGGG 62.760 72.222 0.00 0.00 0.00 4.96
2422 2507 2.121963 AGACACCTTGGGGGAGCA 60.122 61.111 0.00 0.00 38.76 4.26
2913 3037 9.299963 TGTGACTCAACAAATTAAATGTTCAAG 57.700 29.630 6.95 9.48 38.90 3.02
2928 3052 8.128582 CAGTTAAGCTAAAATTGTGACTCAACA 58.871 33.333 0.00 0.00 38.97 3.33
2986 3110 8.341892 ACATTACTGATTATAGCTCAGATCGA 57.658 34.615 16.92 0.00 42.22 3.59
3001 3125 6.950842 TGACTCATTTCCAGACATTACTGAT 58.049 36.000 0.00 0.00 39.94 2.90
3037 3168 4.260375 GCAATACAGAGTTCAAGGCATACG 60.260 45.833 0.00 0.00 0.00 3.06
3066 3199 0.319297 GCAGTTGGCAGGCAAGAAAG 60.319 55.000 10.23 1.68 43.97 2.62
3078 3211 1.004044 AGGAGATGAACAGGCAGTTGG 59.996 52.381 0.00 0.00 41.51 3.77
3079 3212 2.289882 TGAGGAGATGAACAGGCAGTTG 60.290 50.000 0.00 0.00 41.51 3.16
3082 3215 1.277273 TGTGAGGAGATGAACAGGCAG 59.723 52.381 0.00 0.00 0.00 4.85
3085 3218 4.262808 GGGATATGTGAGGAGATGAACAGG 60.263 50.000 0.00 0.00 0.00 4.00
3087 3220 4.560739 AGGGATATGTGAGGAGATGAACA 58.439 43.478 0.00 0.00 0.00 3.18
3094 3227 6.463614 CCTCTACAAAAGGGATATGTGAGGAG 60.464 46.154 13.54 7.30 40.67 3.69
3118 3251 8.641541 ACCACAATGATATAAAAACCATCATCC 58.358 33.333 0.00 0.00 38.21 3.51
3121 3254 9.868277 GAAACCACAATGATATAAAAACCATCA 57.132 29.630 0.00 0.00 33.47 3.07
3122 3255 9.868277 TGAAACCACAATGATATAAAAACCATC 57.132 29.630 0.00 0.00 0.00 3.51
3123 3256 9.651913 GTGAAACCACAATGATATAAAAACCAT 57.348 29.630 0.00 0.00 34.76 3.55
3143 3276 5.634859 CCAATGAAGTATGCAAAGGTGAAAC 59.365 40.000 0.00 0.00 0.00 2.78
3144 3277 5.538053 TCCAATGAAGTATGCAAAGGTGAAA 59.462 36.000 0.00 0.00 0.00 2.69
3145 3278 5.076182 TCCAATGAAGTATGCAAAGGTGAA 58.924 37.500 0.00 0.00 0.00 3.18
3146 3279 4.661222 TCCAATGAAGTATGCAAAGGTGA 58.339 39.130 0.00 0.00 0.00 4.02
3147 3280 4.142315 CCTCCAATGAAGTATGCAAAGGTG 60.142 45.833 0.00 0.00 0.00 4.00
3148 3281 4.019174 CCTCCAATGAAGTATGCAAAGGT 58.981 43.478 0.00 0.00 0.00 3.50
3149 3282 4.019174 ACCTCCAATGAAGTATGCAAAGG 58.981 43.478 0.00 0.00 0.00 3.11
3150 3283 5.649782 AACCTCCAATGAAGTATGCAAAG 57.350 39.130 0.00 0.00 0.00 2.77
3151 3284 6.007076 TGTAACCTCCAATGAAGTATGCAAA 58.993 36.000 0.00 0.00 0.00 3.68
3152 3285 5.414454 GTGTAACCTCCAATGAAGTATGCAA 59.586 40.000 0.00 0.00 0.00 4.08
3153 3286 4.941263 GTGTAACCTCCAATGAAGTATGCA 59.059 41.667 0.00 0.00 0.00 3.96
3154 3287 4.034048 CGTGTAACCTCCAATGAAGTATGC 59.966 45.833 0.00 0.00 0.00 3.14
3155 3288 5.416083 TCGTGTAACCTCCAATGAAGTATG 58.584 41.667 0.00 0.00 0.00 2.39
3156 3289 5.421056 TCTCGTGTAACCTCCAATGAAGTAT 59.579 40.000 0.00 0.00 0.00 2.12
3157 3290 4.768448 TCTCGTGTAACCTCCAATGAAGTA 59.232 41.667 0.00 0.00 0.00 2.24
3158 3291 3.576982 TCTCGTGTAACCTCCAATGAAGT 59.423 43.478 0.00 0.00 0.00 3.01
3159 3292 4.188247 TCTCGTGTAACCTCCAATGAAG 57.812 45.455 0.00 0.00 0.00 3.02
3160 3293 4.221924 TGATCTCGTGTAACCTCCAATGAA 59.778 41.667 0.00 0.00 0.00 2.57
3161 3294 3.767131 TGATCTCGTGTAACCTCCAATGA 59.233 43.478 0.00 0.00 0.00 2.57
3162 3295 4.123497 TGATCTCGTGTAACCTCCAATG 57.877 45.455 0.00 0.00 0.00 2.82
3163 3296 4.819105 TTGATCTCGTGTAACCTCCAAT 57.181 40.909 0.00 0.00 0.00 3.16
3164 3297 4.610605 TTTGATCTCGTGTAACCTCCAA 57.389 40.909 0.00 0.00 0.00 3.53
3165 3298 4.221924 TCATTTGATCTCGTGTAACCTCCA 59.778 41.667 0.00 0.00 0.00 3.86
3166 3299 4.567159 GTCATTTGATCTCGTGTAACCTCC 59.433 45.833 0.00 0.00 0.00 4.30
3167 3300 5.289675 CAGTCATTTGATCTCGTGTAACCTC 59.710 44.000 0.00 0.00 0.00 3.85
3168 3301 5.047306 TCAGTCATTTGATCTCGTGTAACCT 60.047 40.000 0.00 0.00 0.00 3.50
3169 3302 5.168569 TCAGTCATTTGATCTCGTGTAACC 58.831 41.667 0.00 0.00 0.00 2.85
3170 3303 5.864474 ACTCAGTCATTTGATCTCGTGTAAC 59.136 40.000 0.00 0.00 0.00 2.50
3171 3304 6.025749 ACTCAGTCATTTGATCTCGTGTAA 57.974 37.500 0.00 0.00 0.00 2.41
3172 3305 5.644977 ACTCAGTCATTTGATCTCGTGTA 57.355 39.130 0.00 0.00 0.00 2.90
3173 3306 4.527509 ACTCAGTCATTTGATCTCGTGT 57.472 40.909 0.00 0.00 0.00 4.49
3174 3307 6.977502 AGATTACTCAGTCATTTGATCTCGTG 59.022 38.462 0.00 0.00 0.00 4.35
3175 3308 7.068103 AGAGATTACTCAGTCATTTGATCTCGT 59.932 37.037 0.00 0.00 44.79 4.18
3176 3309 7.424803 AGAGATTACTCAGTCATTTGATCTCG 58.575 38.462 0.00 0.00 44.79 4.04
3177 3310 9.598517 AAAGAGATTACTCAGTCATTTGATCTC 57.401 33.333 0.00 0.00 44.79 2.75
3178 3311 9.381033 CAAAGAGATTACTCAGTCATTTGATCT 57.619 33.333 0.00 0.00 44.79 2.75
3179 3312 8.121708 GCAAAGAGATTACTCAGTCATTTGATC 58.878 37.037 0.00 0.00 44.79 2.92
3180 3313 7.201591 CGCAAAGAGATTACTCAGTCATTTGAT 60.202 37.037 0.00 0.00 44.79 2.57
3181 3314 6.091305 CGCAAAGAGATTACTCAGTCATTTGA 59.909 38.462 0.00 0.00 44.79 2.69
3182 3315 6.246449 CGCAAAGAGATTACTCAGTCATTTG 58.754 40.000 0.00 0.00 44.79 2.32
3183 3316 5.163814 GCGCAAAGAGATTACTCAGTCATTT 60.164 40.000 0.30 0.00 44.79 2.32
3184 3317 4.331168 GCGCAAAGAGATTACTCAGTCATT 59.669 41.667 0.30 0.00 44.79 2.57
3185 3318 3.868077 GCGCAAAGAGATTACTCAGTCAT 59.132 43.478 0.30 0.00 44.79 3.06
3186 3319 3.254060 GCGCAAAGAGATTACTCAGTCA 58.746 45.455 0.30 0.00 44.79 3.41
3187 3320 2.605366 GGCGCAAAGAGATTACTCAGTC 59.395 50.000 10.83 0.00 44.79 3.51
3188 3321 2.234908 AGGCGCAAAGAGATTACTCAGT 59.765 45.455 10.83 0.00 44.79 3.41
3189 3322 2.898705 AGGCGCAAAGAGATTACTCAG 58.101 47.619 10.83 0.00 44.79 3.35
3190 3323 3.055819 AGAAGGCGCAAAGAGATTACTCA 60.056 43.478 10.83 0.00 44.79 3.41
3191 3324 3.308323 CAGAAGGCGCAAAGAGATTACTC 59.692 47.826 10.83 0.00 42.90 2.59
3192 3325 3.055819 TCAGAAGGCGCAAAGAGATTACT 60.056 43.478 10.83 0.00 0.00 2.24
3193 3326 3.262420 TCAGAAGGCGCAAAGAGATTAC 58.738 45.455 10.83 0.00 0.00 1.89
3194 3327 3.610040 TCAGAAGGCGCAAAGAGATTA 57.390 42.857 10.83 0.00 0.00 1.75
3195 3328 2.479566 TCAGAAGGCGCAAAGAGATT 57.520 45.000 10.83 0.00 0.00 2.40
3196 3329 2.706339 ATCAGAAGGCGCAAAGAGAT 57.294 45.000 10.83 3.72 0.00 2.75
3197 3330 2.479566 AATCAGAAGGCGCAAAGAGA 57.520 45.000 10.83 0.96 0.00 3.10
3198 3331 3.565905 AAAATCAGAAGGCGCAAAGAG 57.434 42.857 10.83 0.00 0.00 2.85
3199 3332 5.643379 ATAAAAATCAGAAGGCGCAAAGA 57.357 34.783 10.83 0.00 0.00 2.52
3200 3333 6.183360 GGAAATAAAAATCAGAAGGCGCAAAG 60.183 38.462 10.83 0.00 0.00 2.77
3201 3334 5.637387 GGAAATAAAAATCAGAAGGCGCAAA 59.363 36.000 10.83 0.00 0.00 3.68
3202 3335 5.047377 AGGAAATAAAAATCAGAAGGCGCAA 60.047 36.000 10.83 0.00 0.00 4.85
3203 3336 4.462483 AGGAAATAAAAATCAGAAGGCGCA 59.538 37.500 10.83 0.00 0.00 6.09
3204 3337 4.800471 CAGGAAATAAAAATCAGAAGGCGC 59.200 41.667 0.00 0.00 0.00 6.53
3205 3338 4.800471 GCAGGAAATAAAAATCAGAAGGCG 59.200 41.667 0.00 0.00 0.00 5.52
3206 3339 4.800471 CGCAGGAAATAAAAATCAGAAGGC 59.200 41.667 0.00 0.00 0.00 4.35
3207 3340 4.800471 GCGCAGGAAATAAAAATCAGAAGG 59.200 41.667 0.30 0.00 0.00 3.46
3208 3341 5.401550 TGCGCAGGAAATAAAAATCAGAAG 58.598 37.500 5.66 0.00 0.00 2.85
3209 3342 5.384063 TGCGCAGGAAATAAAAATCAGAA 57.616 34.783 5.66 0.00 0.00 3.02
3210 3343 5.384063 TTGCGCAGGAAATAAAAATCAGA 57.616 34.783 11.31 0.00 32.59 3.27
3222 3355 1.006337 GCACCATTTTGCGCAGGAA 60.006 52.632 19.24 14.56 34.77 3.36
3223 3356 2.650196 GCACCATTTTGCGCAGGA 59.350 55.556 19.24 8.76 31.51 3.86
3229 3362 0.899717 TGGAGGGAGCACCATTTTGC 60.900 55.000 1.58 0.00 43.89 3.68
3230 3363 1.856629 ATGGAGGGAGCACCATTTTG 58.143 50.000 1.58 0.00 43.30 2.44
3235 3368 1.139498 TCCAAATGGAGGGAGCACCA 61.139 55.000 1.58 0.00 43.89 4.17
3236 3369 1.691219 TCCAAATGGAGGGAGCACC 59.309 57.895 0.00 0.00 39.78 5.01
3245 3378 9.959721 GAGCCTTATATAAATACTCCAAATGGA 57.040 33.333 1.53 1.53 43.08 3.41
3246 3379 9.739276 TGAGCCTTATATAAATACTCCAAATGG 57.261 33.333 12.84 0.00 0.00 3.16
3250 3383 9.725019 CATGTGAGCCTTATATAAATACTCCAA 57.275 33.333 12.84 5.57 0.00 3.53
3251 3384 8.880244 ACATGTGAGCCTTATATAAATACTCCA 58.120 33.333 0.00 11.19 0.00 3.86
3254 3387 9.856488 CGTACATGTGAGCCTTATATAAATACT 57.144 33.333 9.11 0.00 0.00 2.12
3255 3388 9.635520 ACGTACATGTGAGCCTTATATAAATAC 57.364 33.333 9.11 0.00 0.00 1.89
3260 3393 9.850628 GATTTACGTACATGTGAGCCTTATATA 57.149 33.333 9.11 0.00 0.00 0.86
3261 3394 8.585881 AGATTTACGTACATGTGAGCCTTATAT 58.414 33.333 9.11 0.00 0.00 0.86
3262 3395 7.948357 AGATTTACGTACATGTGAGCCTTATA 58.052 34.615 9.11 0.00 0.00 0.98
3263 3396 6.817184 AGATTTACGTACATGTGAGCCTTAT 58.183 36.000 9.11 0.00 0.00 1.73
3264 3397 6.216801 AGATTTACGTACATGTGAGCCTTA 57.783 37.500 9.11 0.00 0.00 2.69
3265 3398 5.086104 AGATTTACGTACATGTGAGCCTT 57.914 39.130 9.11 0.00 0.00 4.35
3266 3399 4.737855 AGATTTACGTACATGTGAGCCT 57.262 40.909 9.11 0.00 0.00 4.58
3267 3400 6.924060 AGATAAGATTTACGTACATGTGAGCC 59.076 38.462 9.11 0.00 0.00 4.70
3268 3401 7.932120 AGATAAGATTTACGTACATGTGAGC 57.068 36.000 9.11 0.00 0.00 4.26
3291 3424 9.408069 CCGTGCTTTATTAGTAGGTAAGATAAG 57.592 37.037 0.00 0.00 0.00 1.73
3292 3425 8.917088 ACCGTGCTTTATTAGTAGGTAAGATAA 58.083 33.333 0.00 0.00 0.00 1.75
3293 3426 8.469309 ACCGTGCTTTATTAGTAGGTAAGATA 57.531 34.615 0.00 0.00 0.00 1.98
3294 3427 7.357429 ACCGTGCTTTATTAGTAGGTAAGAT 57.643 36.000 0.00 0.00 0.00 2.40
3295 3428 6.458751 CGACCGTGCTTTATTAGTAGGTAAGA 60.459 42.308 0.00 0.00 30.85 2.10
3296 3429 5.684626 CGACCGTGCTTTATTAGTAGGTAAG 59.315 44.000 0.00 0.00 30.85 2.34
3297 3430 5.125417 ACGACCGTGCTTTATTAGTAGGTAA 59.875 40.000 0.00 0.00 30.85 2.85
3298 3431 4.640201 ACGACCGTGCTTTATTAGTAGGTA 59.360 41.667 0.00 0.00 30.85 3.08
3299 3432 3.445096 ACGACCGTGCTTTATTAGTAGGT 59.555 43.478 0.00 0.00 32.46 3.08
3300 3433 4.037858 ACGACCGTGCTTTATTAGTAGG 57.962 45.455 0.00 0.00 0.00 3.18
3301 3434 4.733887 CAGACGACCGTGCTTTATTAGTAG 59.266 45.833 0.00 0.00 0.00 2.57
3302 3435 4.156556 ACAGACGACCGTGCTTTATTAGTA 59.843 41.667 0.00 0.00 0.00 1.82
3303 3436 3.057033 ACAGACGACCGTGCTTTATTAGT 60.057 43.478 0.00 0.00 0.00 2.24
3304 3437 3.508762 ACAGACGACCGTGCTTTATTAG 58.491 45.455 0.00 0.00 0.00 1.73
3305 3438 3.057386 TGACAGACGACCGTGCTTTATTA 60.057 43.478 0.00 0.00 0.00 0.98
3306 3439 2.288579 TGACAGACGACCGTGCTTTATT 60.289 45.455 0.00 0.00 0.00 1.40
3307 3440 1.271379 TGACAGACGACCGTGCTTTAT 59.729 47.619 0.00 0.00 0.00 1.40
3308 3441 0.669619 TGACAGACGACCGTGCTTTA 59.330 50.000 0.00 0.00 0.00 1.85
3309 3442 0.874607 GTGACAGACGACCGTGCTTT 60.875 55.000 0.00 0.00 0.00 3.51
3310 3443 1.299926 GTGACAGACGACCGTGCTT 60.300 57.895 0.00 0.00 0.00 3.91
3311 3444 2.335369 GTGACAGACGACCGTGCT 59.665 61.111 0.00 0.00 0.00 4.40
3320 3453 3.889196 TTGTAAAATGGCGTGACAGAC 57.111 42.857 0.00 0.00 0.00 3.51
3321 3454 6.561737 TTATTTGTAAAATGGCGTGACAGA 57.438 33.333 0.00 0.00 0.00 3.41
3322 3455 6.088883 GGTTTATTTGTAAAATGGCGTGACAG 59.911 38.462 0.00 0.00 0.00 3.51
3323 3456 5.921408 GGTTTATTTGTAAAATGGCGTGACA 59.079 36.000 0.00 0.00 0.00 3.58
3324 3457 5.346551 GGGTTTATTTGTAAAATGGCGTGAC 59.653 40.000 0.00 0.00 0.00 3.67
3325 3458 5.471257 GGGTTTATTTGTAAAATGGCGTGA 58.529 37.500 0.00 0.00 0.00 4.35
3326 3459 4.627900 GGGGTTTATTTGTAAAATGGCGTG 59.372 41.667 0.00 0.00 0.00 5.34
3327 3460 4.528987 AGGGGTTTATTTGTAAAATGGCGT 59.471 37.500 0.00 0.00 0.00 5.68
3328 3461 5.079689 AGGGGTTTATTTGTAAAATGGCG 57.920 39.130 0.00 0.00 0.00 5.69
3329 3462 6.043854 TGAGGGGTTTATTTGTAAAATGGC 57.956 37.500 0.00 0.00 0.00 4.40
3330 3463 7.239763 ACTGAGGGGTTTATTTGTAAAATGG 57.760 36.000 0.00 0.00 0.00 3.16
3331 3464 9.554395 AAAACTGAGGGGTTTATTTGTAAAATG 57.446 29.630 0.00 0.00 38.30 2.32
3332 3465 9.772973 GAAAACTGAGGGGTTTATTTGTAAAAT 57.227 29.630 0.00 0.00 38.30 1.82
3333 3466 8.983789 AGAAAACTGAGGGGTTTATTTGTAAAA 58.016 29.630 0.00 0.00 38.30 1.52
3334 3467 8.417884 CAGAAAACTGAGGGGTTTATTTGTAAA 58.582 33.333 0.00 0.00 38.30 2.01
3335 3468 7.562088 ACAGAAAACTGAGGGGTTTATTTGTAA 59.438 33.333 0.00 0.00 38.30 2.41
3336 3469 7.064229 ACAGAAAACTGAGGGGTTTATTTGTA 58.936 34.615 0.00 0.00 38.30 2.41
3337 3470 5.897250 ACAGAAAACTGAGGGGTTTATTTGT 59.103 36.000 0.00 0.00 38.30 2.83
3338 3471 6.405278 ACAGAAAACTGAGGGGTTTATTTG 57.595 37.500 0.00 0.00 38.30 2.32
3339 3472 8.541899 TTTACAGAAAACTGAGGGGTTTATTT 57.458 30.769 0.00 0.00 38.30 1.40
3340 3473 8.721133 ATTTACAGAAAACTGAGGGGTTTATT 57.279 30.769 0.00 0.00 38.30 1.40
3341 3474 7.947890 TGATTTACAGAAAACTGAGGGGTTTAT 59.052 33.333 0.00 0.00 38.30 1.40
3342 3475 7.291566 TGATTTACAGAAAACTGAGGGGTTTA 58.708 34.615 0.00 0.00 38.30 2.01
3343 3476 6.133356 TGATTTACAGAAAACTGAGGGGTTT 58.867 36.000 0.00 0.00 40.59 3.27
3344 3477 5.701224 TGATTTACAGAAAACTGAGGGGTT 58.299 37.500 0.00 0.00 0.00 4.11
3345 3478 5.319043 TGATTTACAGAAAACTGAGGGGT 57.681 39.130 0.00 0.00 0.00 4.95
3346 3479 5.048013 GGTTGATTTACAGAAAACTGAGGGG 60.048 44.000 0.00 0.00 0.00 4.79
3347 3480 5.048013 GGGTTGATTTACAGAAAACTGAGGG 60.048 44.000 0.00 0.00 0.00 4.30
3348 3481 5.334879 CGGGTTGATTTACAGAAAACTGAGG 60.335 44.000 0.00 0.00 0.00 3.86
3349 3482 5.689819 CGGGTTGATTTACAGAAAACTGAG 58.310 41.667 0.00 0.00 0.00 3.35
3350 3483 4.023536 GCGGGTTGATTTACAGAAAACTGA 60.024 41.667 0.00 0.00 0.00 3.41
3351 3484 4.226761 GCGGGTTGATTTACAGAAAACTG 58.773 43.478 0.00 0.00 0.00 3.16
3352 3485 3.058501 CGCGGGTTGATTTACAGAAAACT 60.059 43.478 0.00 0.00 0.00 2.66
3353 3486 3.231160 CGCGGGTTGATTTACAGAAAAC 58.769 45.455 0.00 0.00 0.00 2.43
3354 3487 2.226912 CCGCGGGTTGATTTACAGAAAA 59.773 45.455 20.10 0.00 0.00 2.29
3355 3488 1.807742 CCGCGGGTTGATTTACAGAAA 59.192 47.619 20.10 0.00 0.00 2.52
3356 3489 1.270947 ACCGCGGGTTGATTTACAGAA 60.271 47.619 31.76 0.00 27.29 3.02
3357 3490 0.322322 ACCGCGGGTTGATTTACAGA 59.678 50.000 31.76 0.00 27.29 3.41
3358 3491 1.662122 GTACCGCGGGTTGATTTACAG 59.338 52.381 31.76 0.00 37.09 2.74
3359 3492 1.001746 TGTACCGCGGGTTGATTTACA 59.998 47.619 31.76 22.68 37.09 2.41
3360 3493 1.394572 GTGTACCGCGGGTTGATTTAC 59.605 52.381 31.76 20.29 37.09 2.01
3361 3494 1.724429 GTGTACCGCGGGTTGATTTA 58.276 50.000 31.76 7.81 37.09 1.40
3362 3495 1.293267 CGTGTACCGCGGGTTGATTT 61.293 55.000 31.76 9.01 37.09 2.17
3363 3496 1.738830 CGTGTACCGCGGGTTGATT 60.739 57.895 31.76 9.87 37.09 2.57
3364 3497 2.125832 CGTGTACCGCGGGTTGAT 60.126 61.111 31.76 10.73 37.09 2.57
3365 3498 2.641439 AAACGTGTACCGCGGGTTGA 62.641 55.000 31.76 8.83 41.96 3.18
3366 3499 0.943359 TAAACGTGTACCGCGGGTTG 60.943 55.000 31.76 16.36 41.96 3.77
3367 3500 0.249657 TTAAACGTGTACCGCGGGTT 60.250 50.000 31.76 20.13 41.96 4.11
3368 3501 0.667184 CTTAAACGTGTACCGCGGGT 60.667 55.000 31.76 14.70 41.96 5.28
3369 3502 0.667184 ACTTAAACGTGTACCGCGGG 60.667 55.000 31.76 13.93 41.96 6.13
3370 3503 1.139163 AACTTAAACGTGTACCGCGG 58.861 50.000 26.86 26.86 41.96 6.46
3371 3504 2.928295 AAACTTAAACGTGTACCGCG 57.072 45.000 0.00 0.00 43.38 6.46
3372 3505 4.903585 GGTTAAAACTTAAACGTGTACCGC 59.096 41.667 0.00 0.00 41.42 5.68
3373 3506 6.042144 TGGTTAAAACTTAAACGTGTACCG 57.958 37.500 0.00 2.71 44.03 4.02
3374 3507 7.219917 GGTTTGGTTAAAACTTAAACGTGTACC 59.780 37.037 14.21 0.00 46.27 3.34
3375 3508 7.045031 CGGTTTGGTTAAAACTTAAACGTGTAC 60.045 37.037 14.21 0.00 46.27 2.90
3376 3509 6.963805 CGGTTTGGTTAAAACTTAAACGTGTA 59.036 34.615 14.21 0.00 46.27 2.90
3377 3510 5.799435 CGGTTTGGTTAAAACTTAAACGTGT 59.201 36.000 14.21 0.00 46.27 4.49
3378 3511 5.799435 ACGGTTTGGTTAAAACTTAAACGTG 59.201 36.000 16.68 13.57 46.27 4.49
3379 3512 5.948588 ACGGTTTGGTTAAAACTTAAACGT 58.051 33.333 13.68 13.68 46.27 3.99
3380 3513 6.867799 AACGGTTTGGTTAAAACTTAAACG 57.132 33.333 12.78 12.78 46.27 3.60
3403 3536 7.272244 GGGGTTTTCTGAGAAAATGAGAAAAA 58.728 34.615 21.69 0.00 43.68 1.94
3404 3537 6.183360 GGGGGTTTTCTGAGAAAATGAGAAAA 60.183 38.462 21.69 0.00 41.28 2.29
3405 3538 5.304357 GGGGGTTTTCTGAGAAAATGAGAAA 59.696 40.000 21.69 0.00 34.63 2.52
3406 3539 4.832823 GGGGGTTTTCTGAGAAAATGAGAA 59.167 41.667 21.69 0.00 0.00 2.87
3407 3540 4.106341 AGGGGGTTTTCTGAGAAAATGAGA 59.894 41.667 21.69 0.00 0.00 3.27
3408 3541 4.219288 CAGGGGGTTTTCTGAGAAAATGAG 59.781 45.833 21.69 7.21 33.11 2.90
3409 3542 4.141041 TCAGGGGGTTTTCTGAGAAAATGA 60.141 41.667 21.69 17.29 35.37 2.57
3410 3543 4.021981 GTCAGGGGGTTTTCTGAGAAAATG 60.022 45.833 21.69 15.50 40.24 2.32
3411 3544 4.152647 GTCAGGGGGTTTTCTGAGAAAAT 58.847 43.478 21.69 4.44 40.24 1.82
3412 3545 3.562182 GTCAGGGGGTTTTCTGAGAAAA 58.438 45.455 15.81 15.81 40.24 2.29
3413 3546 2.486548 CGTCAGGGGGTTTTCTGAGAAA 60.487 50.000 3.02 3.02 40.24 2.52
3414 3547 1.071699 CGTCAGGGGGTTTTCTGAGAA 59.928 52.381 0.00 0.00 40.24 2.87
3415 3548 0.685097 CGTCAGGGGGTTTTCTGAGA 59.315 55.000 0.00 0.00 40.24 3.27
3416 3549 0.396811 ACGTCAGGGGGTTTTCTGAG 59.603 55.000 0.00 0.00 40.24 3.35
3417 3550 0.841289 AACGTCAGGGGGTTTTCTGA 59.159 50.000 0.00 0.00 37.65 3.27
3418 3551 1.687563 AAACGTCAGGGGGTTTTCTG 58.312 50.000 0.00 0.00 32.77 3.02
3419 3552 2.447408 AAAACGTCAGGGGGTTTTCT 57.553 45.000 0.00 0.00 41.15 2.52
3420 3553 3.251729 GTCTAAAACGTCAGGGGGTTTTC 59.748 47.826 5.29 0.00 43.22 2.29
3421 3554 3.216800 GTCTAAAACGTCAGGGGGTTTT 58.783 45.455 7.03 7.03 45.39 2.43
3422 3555 2.173143 TGTCTAAAACGTCAGGGGGTTT 59.827 45.455 0.00 0.00 37.94 3.27
3423 3556 1.770061 TGTCTAAAACGTCAGGGGGTT 59.230 47.619 0.00 0.00 0.00 4.11
3424 3557 1.426751 TGTCTAAAACGTCAGGGGGT 58.573 50.000 0.00 0.00 0.00 4.95
3425 3558 2.554370 TTGTCTAAAACGTCAGGGGG 57.446 50.000 0.00 0.00 0.00 5.40
3426 3559 3.670625 TGATTGTCTAAAACGTCAGGGG 58.329 45.455 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.