Multiple sequence alignment - TraesCS7A01G447600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G447600 chr7A 100.000 2827 0 0 1 2827 642187735 642190561 0.000000e+00 5221.0
1 TraesCS7A01G447600 chr7A 95.607 387 10 4 2237 2621 78343776 78344157 5.180000e-172 614.0
2 TraesCS7A01G447600 chr7A 95.325 385 14 4 2237 2619 678507275 678507657 2.410000e-170 608.0
3 TraesCS7A01G447600 chr7A 95.515 379 13 3 2237 2614 26119770 26119395 1.120000e-168 603.0
4 TraesCS7A01G447600 chr7A 94.643 392 12 5 2237 2626 698437892 698437508 1.450000e-167 599.0
5 TraesCS7A01G447600 chr7A 94.388 392 15 4 2237 2626 279033654 279034040 1.870000e-166 595.0
6 TraesCS7A01G447600 chr7A 84.783 92 6 5 2631 2721 642190302 642190386 5.020000e-13 86.1
7 TraesCS7A01G447600 chr7D 91.860 1290 56 13 619 1861 556469359 556470646 0.000000e+00 1755.0
8 TraesCS7A01G447600 chr7D 93.087 622 36 6 1 621 556468712 556469327 0.000000e+00 904.0
9 TraesCS7A01G447600 chr7D 90.909 121 8 3 2071 2190 556613019 556613137 2.910000e-35 159.0
10 TraesCS7A01G447600 chr7D 95.890 73 3 0 2003 2075 556608783 556608855 4.950000e-23 119.0
11 TraesCS7A01G447600 chr7D 75.099 253 47 14 184 426 592727650 592727404 1.390000e-18 104.0
12 TraesCS7A01G447600 chr7D 76.923 156 25 10 6 151 629588467 629588313 8.400000e-11 78.7
13 TraesCS7A01G447600 chr7D 100.000 37 0 0 2187 2223 556613175 556613211 5.050000e-08 69.4
14 TraesCS7A01G447600 chr7B 90.300 1268 53 11 723 1935 603995881 603997133 0.000000e+00 1596.0
15 TraesCS7A01G447600 chr7B 92.788 721 36 5 662 1373 603746119 603746832 0.000000e+00 1029.0
16 TraesCS7A01G447600 chr7B 86.981 699 55 13 1218 1885 603746722 603747415 0.000000e+00 754.0
17 TraesCS7A01G447600 chr7B 92.795 458 27 5 167 621 603995206 603995660 0.000000e+00 658.0
18 TraesCS7A01G447600 chr7B 91.757 461 29 5 167 622 603745428 603745884 1.430000e-177 632.0
19 TraesCS7A01G447600 chr7B 85.100 651 50 19 1264 1889 603835489 603836117 3.090000e-174 621.0
20 TraesCS7A01G447600 chr7B 83.819 309 21 10 1884 2190 603751153 603751434 1.670000e-67 267.0
21 TraesCS7A01G447600 chr7B 85.328 259 15 10 1932 2190 604020346 604020581 2.180000e-61 246.0
22 TraesCS7A01G447600 chr7B 85.119 168 15 3 1 158 405062133 405061966 2.250000e-36 163.0
23 TraesCS7A01G447600 chr7B 91.892 111 5 1 1874 1980 603837567 603837677 4.880000e-33 152.0
24 TraesCS7A01G447600 chr7B 89.076 119 11 2 781 898 603834420 603834537 2.270000e-31 147.0
25 TraesCS7A01G447600 chr7B 76.569 239 44 10 176 406 535826508 535826742 1.380000e-23 121.0
26 TraesCS7A01G447600 chr7B 100.000 41 0 0 2187 2227 603751473 603751513 3.020000e-10 76.8
27 TraesCS7A01G447600 chr7B 93.878 49 2 1 619 666 603995694 603995742 3.910000e-09 73.1
28 TraesCS7A01G447600 chr7B 100.000 39 0 0 700 738 603995830 603995868 3.910000e-09 73.1
29 TraesCS7A01G447600 chr7B 95.455 44 2 0 2191 2234 603957823 603957866 1.410000e-08 71.3
30 TraesCS7A01G447600 chr7B 100.000 31 0 0 708 738 603995754 603995784 1.090000e-04 58.4
31 TraesCS7A01G447600 chr5A 96.809 376 7 2 2237 2611 32114203 32114574 8.600000e-175 623.0
32 TraesCS7A01G447600 chr5A 94.133 392 18 4 2237 2626 45913331 45913719 2.430000e-165 592.0
33 TraesCS7A01G447600 chr6A 95.103 388 13 5 2237 2619 100187530 100187916 8.660000e-170 606.0
34 TraesCS7A01G447600 chr6A 80.612 98 12 7 2659 2753 395546994 395546901 5.050000e-08 69.4
35 TraesCS7A01G447600 chr3A 94.898 392 11 5 2237 2626 147060214 147059830 3.120000e-169 604.0
36 TraesCS7A01G447600 chr3A 75.862 261 42 16 178 426 13847779 13847528 2.300000e-21 113.0
37 TraesCS7A01G447600 chr3A 75.676 259 43 15 178 424 399898187 399898437 8.280000e-21 111.0
38 TraesCS7A01G447600 chr3A 81.731 104 14 5 2662 2762 731215622 731215521 6.490000e-12 82.4
39 TraesCS7A01G447600 chr3A 97.368 38 1 0 2631 2668 108922834 108922871 6.540000e-07 65.8
40 TraesCS7A01G447600 chr4A 87.931 174 12 9 2659 2827 539132032 539131863 2.220000e-46 196.0
41 TraesCS7A01G447600 chr3D 76.772 254 38 16 182 423 305497396 305497152 3.820000e-24 122.0
42 TraesCS7A01G447600 chr5D 75.564 266 39 19 176 426 32147721 32147975 1.070000e-19 108.0
43 TraesCS7A01G447600 chr2B 77.326 172 26 8 1 160 80671980 80671810 3.880000e-14 89.8
44 TraesCS7A01G447600 chr2B 81.000 100 11 8 2659 2753 659875996 659875900 3.910000e-09 73.1
45 TraesCS7A01G447600 chr2B 95.000 40 2 0 109 148 794306892 794306853 2.350000e-06 63.9
46 TraesCS7A01G447600 chr2A 93.103 58 4 0 100 157 587450066 587450009 5.020000e-13 86.1
47 TraesCS7A01G447600 chr2A 86.301 73 7 3 87 158 568305656 568305726 3.020000e-10 76.8
48 TraesCS7A01G447600 chr3B 81.651 109 12 8 2659 2762 521537100 521537205 1.800000e-12 84.2
49 TraesCS7A01G447600 chr3B 79.832 119 13 11 2640 2753 776989454 776989566 3.020000e-10 76.8
50 TraesCS7A01G447600 chr3B 81.188 101 11 8 2657 2753 1455040 1455136 1.090000e-09 75.0
51 TraesCS7A01G447600 chr3B 87.500 64 6 1 86 149 592858622 592858561 3.910000e-09 73.1
52 TraesCS7A01G447600 chr1A 100.000 42 0 0 2631 2672 8908437 8908478 8.400000e-11 78.7
53 TraesCS7A01G447600 chr5B 88.889 63 5 2 86 148 513965816 513965876 3.020000e-10 76.8
54 TraesCS7A01G447600 chr1B 86.111 72 6 4 2694 2762 648490493 648490563 1.090000e-09 75.0
55 TraesCS7A01G447600 chrUn 85.915 71 7 3 2694 2762 416540051 416539982 3.910000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G447600 chr7A 642187735 642190561 2826 False 2653.550000 5221 92.391500 1 2827 2 chr7A.!!$F4 2826
1 TraesCS7A01G447600 chr7D 556468712 556470646 1934 False 1329.500000 1755 92.473500 1 1861 2 chr7D.!!$F2 1860
2 TraesCS7A01G447600 chr7B 603745428 603751513 6085 False 551.760000 1029 91.069000 167 2227 5 chr7B.!!$F4 2060
3 TraesCS7A01G447600 chr7B 603995206 603997133 1927 False 491.720000 1596 95.394600 167 1935 5 chr7B.!!$F6 1768
4 TraesCS7A01G447600 chr7B 603834420 603837677 3257 False 306.666667 621 88.689333 781 1980 3 chr7B.!!$F5 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.032678 CCGACGGCTGCTCAGATATT 59.967 55.0 0.0 0.0 0.0 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 7269 0.960364 GGCGTCACATCCCACATGTT 60.96 55.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.120105 CCGACGGCTGCTCAGATA 58.880 61.111 0.00 0.00 0.00 1.98
31 32 0.032678 CCGACGGCTGCTCAGATATT 59.967 55.000 0.00 0.00 0.00 1.28
63 64 6.975196 TTGAAAATTGGAAAGGATCTCACA 57.025 33.333 0.00 0.00 0.00 3.58
86 87 7.651304 CACACACTAAATTTTCTACCATGCAAA 59.349 33.333 0.00 0.00 0.00 3.68
135 136 2.109181 GGCCGGGTGTAGATGAGC 59.891 66.667 2.18 0.00 0.00 4.26
483 489 0.395862 TTTTGCGGGTGAAAGGTGGA 60.396 50.000 0.00 0.00 0.00 4.02
539 545 5.125356 CAAAATGAGCCCTTTCCAAAGTTT 58.875 37.500 0.00 0.00 34.20 2.66
596 606 9.174166 TGCAAGGTAGTAGAATTTTTAATCTCC 57.826 33.333 0.00 0.00 0.00 3.71
675 889 6.887545 GCTCTAGCCTCTATATCCAGAGTAAA 59.112 42.308 2.56 0.00 40.47 2.01
690 904 2.546368 GAGTAAACCATGTCGTGCACAA 59.454 45.455 18.64 0.00 38.97 3.33
756 998 7.439157 TTCAACCATGTCTATTCACTCAAAG 57.561 36.000 0.00 0.00 0.00 2.77
837 1087 5.991606 TGGTCAACTTGAGTGATTAAGTCAG 59.008 40.000 0.00 0.00 39.44 3.51
1069 1993 5.048991 ACAGTTCTCTCGAGTTTCTTCTCTC 60.049 44.000 13.13 0.00 32.83 3.20
1139 2070 4.426112 TGCAGCCGCTCTCACTCG 62.426 66.667 0.00 0.00 39.64 4.18
1277 2268 2.352821 CGATACCACCACCACCGGA 61.353 63.158 9.46 0.00 0.00 5.14
1305 2296 2.592993 GCCACCACCACTAGAGGCA 61.593 63.158 6.07 0.00 41.63 4.75
1503 2572 1.699656 CCTGCGACGAGAAATGCCAG 61.700 60.000 0.00 0.00 0.00 4.85
1563 2632 2.281484 GAGGAGTGCACGGCCAAA 60.281 61.111 26.54 0.00 0.00 3.28
1594 2663 3.330275 GTGACTGCCACACCGAAC 58.670 61.111 0.00 0.00 45.03 3.95
1656 2725 2.825836 CCCTGCTTGACCATCCGC 60.826 66.667 0.00 0.00 0.00 5.54
1658 2727 3.197790 CTGCTTGACCATCCGCCG 61.198 66.667 0.00 0.00 0.00 6.46
1817 2919 3.248602 CCTACTGTATACACGTACGGGAC 59.751 52.174 27.01 12.95 35.67 4.46
1875 2982 3.444916 TCGTTCCATCTCGTTGATTAGC 58.555 45.455 0.00 0.00 32.05 3.09
1905 7148 5.907197 TTTTAAGTTTCTCTCGCTCACTG 57.093 39.130 0.00 0.00 0.00 3.66
1941 7184 5.849475 TGGTATTATGAGATTTAGGGCCAGA 59.151 40.000 6.18 0.00 0.00 3.86
1942 7185 6.505344 TGGTATTATGAGATTTAGGGCCAGAT 59.495 38.462 6.18 0.00 0.00 2.90
1955 7202 2.027314 CAGATCGGCTCCTGCGAG 59.973 66.667 0.00 0.00 40.82 5.03
2009 7257 3.893720 AGAAAATTGAACAAGAGCAGCG 58.106 40.909 0.00 0.00 0.00 5.18
2012 7260 4.829064 AAATTGAACAAGAGCAGCGTAA 57.171 36.364 0.00 0.00 0.00 3.18
2020 7268 0.035458 AGAGCAGCGTAACTTTGGCT 59.965 50.000 0.00 0.00 37.55 4.75
2021 7269 1.275291 AGAGCAGCGTAACTTTGGCTA 59.725 47.619 0.00 0.00 34.75 3.93
2022 7270 2.073816 GAGCAGCGTAACTTTGGCTAA 58.926 47.619 0.00 0.00 34.75 3.09
2023 7271 1.804748 AGCAGCGTAACTTTGGCTAAC 59.195 47.619 0.00 0.00 34.75 2.34
2024 7272 1.533731 GCAGCGTAACTTTGGCTAACA 59.466 47.619 0.00 0.00 34.75 2.41
2025 7273 2.161609 GCAGCGTAACTTTGGCTAACAT 59.838 45.455 0.00 0.00 34.75 2.71
2026 7274 3.747193 CAGCGTAACTTTGGCTAACATG 58.253 45.455 0.00 0.00 34.75 3.21
2027 7275 3.188460 CAGCGTAACTTTGGCTAACATGT 59.812 43.478 0.00 0.00 34.75 3.21
2028 7276 3.188460 AGCGTAACTTTGGCTAACATGTG 59.812 43.478 0.00 0.00 34.75 3.21
2029 7277 3.669557 GCGTAACTTTGGCTAACATGTGG 60.670 47.826 0.00 0.00 0.00 4.17
2030 7278 3.119990 CGTAACTTTGGCTAACATGTGGG 60.120 47.826 0.00 0.00 0.00 4.61
2031 7279 2.969821 ACTTTGGCTAACATGTGGGA 57.030 45.000 0.00 0.00 0.00 4.37
2032 7280 3.456380 ACTTTGGCTAACATGTGGGAT 57.544 42.857 0.00 0.00 0.00 3.85
2033 7281 3.091545 ACTTTGGCTAACATGTGGGATG 58.908 45.455 0.00 0.00 0.00 3.51
2034 7282 2.897271 TTGGCTAACATGTGGGATGT 57.103 45.000 0.00 0.00 0.00 3.06
2035 7283 2.127271 TGGCTAACATGTGGGATGTG 57.873 50.000 0.00 0.00 31.80 3.21
2036 7284 1.632920 TGGCTAACATGTGGGATGTGA 59.367 47.619 0.00 0.00 31.80 3.58
2037 7285 2.017049 GGCTAACATGTGGGATGTGAC 58.983 52.381 0.00 0.00 31.80 3.67
2038 7286 1.665679 GCTAACATGTGGGATGTGACG 59.334 52.381 0.00 0.00 31.80 4.35
2039 7287 1.665679 CTAACATGTGGGATGTGACGC 59.334 52.381 0.00 0.00 31.80 5.19
2040 7288 0.960364 AACATGTGGGATGTGACGCC 60.960 55.000 0.00 0.00 31.80 5.68
2041 7289 2.114670 CATGTGGGATGTGACGCCC 61.115 63.158 6.40 6.40 44.93 6.13
2061 7309 4.323792 GCCCATATATACATGGCACTCTGT 60.324 45.833 4.34 0.00 43.63 3.41
2074 7322 1.313812 ACTCTGTACTTCCCGCGGAG 61.314 60.000 30.73 20.32 40.44 4.63
2109 7358 1.911357 TGGAGCTTCAGTCATGTGGAT 59.089 47.619 0.00 0.00 0.00 3.41
2122 7371 4.042884 TCATGTGGATGAAGATCTCCCTT 58.957 43.478 0.00 0.00 35.55 3.95
2127 7376 3.118112 TGGATGAAGATCTCCCTTTGCTC 60.118 47.826 0.00 0.00 0.00 4.26
2142 7391 1.478631 TGCTCGATCTCACTCCACAT 58.521 50.000 0.00 0.00 0.00 3.21
2147 7396 3.477530 TCGATCTCACTCCACATACGAT 58.522 45.455 0.00 0.00 0.00 3.73
2176 7425 8.164070 AGTAAGAATGAAGATTACCCTTTGTGT 58.836 33.333 0.00 0.00 31.21 3.72
2177 7426 6.824305 AGAATGAAGATTACCCTTTGTGTG 57.176 37.500 0.00 0.00 0.00 3.82
2178 7427 5.711976 AGAATGAAGATTACCCTTTGTGTGG 59.288 40.000 0.00 0.00 0.00 4.17
2180 7429 2.969821 AGATTACCCTTTGTGTGGCA 57.030 45.000 0.00 0.00 0.00 4.92
2181 7430 2.514803 AGATTACCCTTTGTGTGGCAC 58.485 47.619 11.55 11.55 34.56 5.01
2182 7431 2.108250 AGATTACCCTTTGTGTGGCACT 59.892 45.455 19.83 0.00 35.11 4.40
2183 7432 1.686355 TTACCCTTTGTGTGGCACTG 58.314 50.000 19.83 3.96 35.11 3.66
2237 7526 2.471862 GAGGATCGACGACACCTTAC 57.528 55.000 21.09 10.01 32.53 2.34
2238 7527 2.015587 GAGGATCGACGACACCTTACT 58.984 52.381 21.09 3.63 32.53 2.24
2239 7528 3.201290 GAGGATCGACGACACCTTACTA 58.799 50.000 21.09 0.00 32.53 1.82
2240 7529 3.204526 AGGATCGACGACACCTTACTAG 58.795 50.000 16.48 0.00 0.00 2.57
2241 7530 2.941720 GGATCGACGACACCTTACTAGT 59.058 50.000 0.00 0.00 0.00 2.57
2242 7531 3.242673 GGATCGACGACACCTTACTAGTG 60.243 52.174 5.39 0.00 41.15 2.74
2243 7532 1.466167 TCGACGACACCTTACTAGTGC 59.534 52.381 5.39 0.00 38.87 4.40
2244 7533 1.198408 CGACGACACCTTACTAGTGCA 59.802 52.381 5.39 0.00 38.87 4.57
2245 7534 2.728225 CGACGACACCTTACTAGTGCAG 60.728 54.545 5.39 1.09 38.87 4.41
2246 7535 2.486982 GACGACACCTTACTAGTGCAGA 59.513 50.000 5.39 0.00 38.87 4.26
2247 7536 2.889045 ACGACACCTTACTAGTGCAGAA 59.111 45.455 5.39 0.00 38.87 3.02
2248 7537 3.243336 CGACACCTTACTAGTGCAGAAC 58.757 50.000 5.39 0.00 38.87 3.01
2249 7538 3.586892 GACACCTTACTAGTGCAGAACC 58.413 50.000 5.39 0.00 38.87 3.62
2250 7539 2.029290 ACACCTTACTAGTGCAGAACCG 60.029 50.000 5.39 0.00 38.87 4.44
2251 7540 1.549170 ACCTTACTAGTGCAGAACCGG 59.451 52.381 5.39 0.00 0.00 5.28
2252 7541 1.134788 CCTTACTAGTGCAGAACCGGG 60.135 57.143 6.32 0.00 0.00 5.73
2253 7542 0.248289 TTACTAGTGCAGAACCGGGC 59.752 55.000 6.32 0.00 0.00 6.13
2254 7543 0.901114 TACTAGTGCAGAACCGGGCA 60.901 55.000 6.32 1.81 37.77 5.36
2255 7544 1.003839 CTAGTGCAGAACCGGGCAA 60.004 57.895 6.32 0.00 42.45 4.52
2256 7545 0.392998 CTAGTGCAGAACCGGGCAAT 60.393 55.000 6.32 7.58 42.45 3.56
2257 7546 0.906066 TAGTGCAGAACCGGGCAATA 59.094 50.000 6.32 6.43 42.45 1.90
2258 7547 0.392998 AGTGCAGAACCGGGCAATAG 60.393 55.000 6.32 0.00 42.45 1.73
2259 7548 1.748879 TGCAGAACCGGGCAATAGC 60.749 57.895 6.32 2.35 37.03 2.97
2260 7549 1.748879 GCAGAACCGGGCAATAGCA 60.749 57.895 6.32 0.00 44.61 3.49
2261 7550 1.993369 GCAGAACCGGGCAATAGCAC 61.993 60.000 6.32 0.00 44.61 4.40
2262 7551 1.077716 AGAACCGGGCAATAGCACC 60.078 57.895 6.32 0.00 42.77 5.01
2266 7555 2.437716 CGGGCAATAGCACCGGTT 60.438 61.111 2.97 0.00 45.12 4.44
2267 7556 2.469516 CGGGCAATAGCACCGGTTC 61.470 63.158 2.97 0.00 45.12 3.62
2268 7557 2.469516 GGGCAATAGCACCGGTTCG 61.470 63.158 2.97 0.00 44.61 3.95
2269 7558 1.743995 GGCAATAGCACCGGTTCGT 60.744 57.895 2.97 0.00 44.61 3.85
2270 7559 0.460635 GGCAATAGCACCGGTTCGTA 60.461 55.000 2.97 0.00 44.61 3.43
2271 7560 1.361793 GCAATAGCACCGGTTCGTAA 58.638 50.000 2.97 0.00 41.58 3.18
2272 7561 1.733360 GCAATAGCACCGGTTCGTAAA 59.267 47.619 2.97 0.00 41.58 2.01
2273 7562 2.222953 GCAATAGCACCGGTTCGTAAAG 60.223 50.000 2.97 0.00 41.58 1.85
2274 7563 1.648504 ATAGCACCGGTTCGTAAAGC 58.351 50.000 2.97 2.83 0.00 3.51
2275 7564 0.390209 TAGCACCGGTTCGTAAAGCC 60.390 55.000 2.97 0.00 0.00 4.35
2276 7565 2.683859 GCACCGGTTCGTAAAGCCC 61.684 63.158 2.97 0.00 0.00 5.19
2277 7566 1.004200 CACCGGTTCGTAAAGCCCT 60.004 57.895 2.97 0.00 0.00 5.19
2278 7567 0.604511 CACCGGTTCGTAAAGCCCTT 60.605 55.000 2.97 0.00 0.00 3.95
2279 7568 0.109153 ACCGGTTCGTAAAGCCCTTT 59.891 50.000 0.00 0.00 36.63 3.11
2280 7569 1.347378 ACCGGTTCGTAAAGCCCTTTA 59.653 47.619 0.00 0.00 34.23 1.85
2281 7570 2.004733 CCGGTTCGTAAAGCCCTTTAG 58.995 52.381 0.00 0.00 35.90 1.85
2282 7571 2.613725 CCGGTTCGTAAAGCCCTTTAGT 60.614 50.000 0.00 0.00 35.90 2.24
2283 7572 2.414138 CGGTTCGTAAAGCCCTTTAGTG 59.586 50.000 0.93 0.00 35.90 2.74
2284 7573 2.161012 GGTTCGTAAAGCCCTTTAGTGC 59.839 50.000 0.93 0.00 35.90 4.40
2285 7574 2.103537 TCGTAAAGCCCTTTAGTGCC 57.896 50.000 0.93 0.00 35.90 5.01
2286 7575 0.725117 CGTAAAGCCCTTTAGTGCCG 59.275 55.000 0.93 0.00 35.90 5.69
2287 7576 1.092348 GTAAAGCCCTTTAGTGCCGG 58.908 55.000 0.00 0.00 35.90 6.13
2288 7577 0.694196 TAAAGCCCTTTAGTGCCGGT 59.306 50.000 1.90 0.00 34.23 5.28
2289 7578 0.178973 AAAGCCCTTTAGTGCCGGTT 60.179 50.000 1.90 0.00 0.00 4.44
2290 7579 0.178973 AAGCCCTTTAGTGCCGGTTT 60.179 50.000 1.90 0.00 0.00 3.27
2291 7580 0.893727 AGCCCTTTAGTGCCGGTTTG 60.894 55.000 1.90 0.00 0.00 2.93
2292 7581 1.873270 GCCCTTTAGTGCCGGTTTGG 61.873 60.000 1.90 0.00 42.50 3.28
2293 7582 0.538746 CCCTTTAGTGCCGGTTTGGT 60.539 55.000 1.90 0.00 41.21 3.67
2294 7583 1.271488 CCCTTTAGTGCCGGTTTGGTA 60.271 52.381 1.90 0.00 41.21 3.25
2295 7584 2.506444 CCTTTAGTGCCGGTTTGGTAA 58.494 47.619 1.90 0.00 41.21 2.85
2296 7585 2.227149 CCTTTAGTGCCGGTTTGGTAAC 59.773 50.000 1.90 0.00 41.21 2.50
2303 7592 2.670592 GGTTTGGTAACCGGCGCT 60.671 61.111 7.64 0.00 44.12 5.92
2304 7593 1.375780 GGTTTGGTAACCGGCGCTA 60.376 57.895 7.64 0.00 44.12 4.26
2305 7594 0.954938 GGTTTGGTAACCGGCGCTAA 60.955 55.000 7.64 0.00 44.12 3.09
2306 7595 0.873721 GTTTGGTAACCGGCGCTAAA 59.126 50.000 7.64 0.00 0.00 1.85
2307 7596 1.266446 GTTTGGTAACCGGCGCTAAAA 59.734 47.619 7.64 0.00 0.00 1.52
2308 7597 1.823797 TTGGTAACCGGCGCTAAAAT 58.176 45.000 7.64 0.00 0.00 1.82
2309 7598 1.088306 TGGTAACCGGCGCTAAAATG 58.912 50.000 7.64 0.00 0.00 2.32
2310 7599 1.089112 GGTAACCGGCGCTAAAATGT 58.911 50.000 7.64 0.00 0.00 2.71
2311 7600 2.278854 GGTAACCGGCGCTAAAATGTA 58.721 47.619 7.64 0.00 0.00 2.29
2312 7601 2.286025 GGTAACCGGCGCTAAAATGTAG 59.714 50.000 7.64 0.00 0.00 2.74
2313 7602 1.375551 AACCGGCGCTAAAATGTAGG 58.624 50.000 7.64 0.00 0.00 3.18
2314 7603 1.093496 ACCGGCGCTAAAATGTAGGC 61.093 55.000 7.64 0.00 0.00 3.93
2315 7604 1.092921 CCGGCGCTAAAATGTAGGCA 61.093 55.000 7.64 0.00 0.00 4.75
2316 7605 0.027586 CGGCGCTAAAATGTAGGCAC 59.972 55.000 7.64 0.00 0.00 5.01
2317 7606 1.379527 GGCGCTAAAATGTAGGCACT 58.620 50.000 7.64 0.00 46.37 4.40
2318 7607 2.557317 GGCGCTAAAATGTAGGCACTA 58.443 47.619 7.64 0.00 41.75 2.74
2319 7608 2.940410 GGCGCTAAAATGTAGGCACTAA 59.060 45.455 7.64 0.00 45.48 2.24
2320 7609 3.375922 GGCGCTAAAATGTAGGCACTAAA 59.624 43.478 7.64 0.00 45.48 1.85
2321 7610 4.495844 GGCGCTAAAATGTAGGCACTAAAG 60.496 45.833 7.64 0.00 45.48 1.85
2322 7611 4.588278 CGCTAAAATGTAGGCACTAAAGC 58.412 43.478 0.00 0.00 45.48 3.51
2352 7641 1.278537 CCCCCTTTAGTACCGGTTCA 58.721 55.000 15.04 0.00 0.00 3.18
2353 7642 1.208776 CCCCCTTTAGTACCGGTTCAG 59.791 57.143 15.04 0.52 0.00 3.02
2354 7643 1.406477 CCCCTTTAGTACCGGTTCAGC 60.406 57.143 15.04 0.59 0.00 4.26
2355 7644 1.276989 CCCTTTAGTACCGGTTCAGCA 59.723 52.381 15.04 0.00 0.00 4.41
2356 7645 2.344025 CCTTTAGTACCGGTTCAGCAC 58.656 52.381 15.04 3.84 0.00 4.40
2357 7646 1.990563 CTTTAGTACCGGTTCAGCACG 59.009 52.381 15.04 0.00 0.00 5.34
2358 7647 1.246649 TTAGTACCGGTTCAGCACGA 58.753 50.000 15.04 0.00 0.00 4.35
2359 7648 1.246649 TAGTACCGGTTCAGCACGAA 58.753 50.000 15.04 0.00 0.00 3.85
2372 7661 2.159181 CACGAACCGGTGCTAAAGG 58.841 57.895 8.52 0.00 0.00 3.11
2373 7662 1.004200 ACGAACCGGTGCTAAAGGG 60.004 57.895 8.52 0.00 0.00 3.95
2374 7663 2.396157 CGAACCGGTGCTAAAGGGC 61.396 63.158 8.52 0.00 0.00 5.19
2375 7664 1.302993 GAACCGGTGCTAAAGGGCA 60.303 57.895 8.52 0.00 40.15 5.36
2376 7665 0.891904 GAACCGGTGCTAAAGGGCAA 60.892 55.000 8.52 0.00 44.18 4.52
2377 7666 1.176619 AACCGGTGCTAAAGGGCAAC 61.177 55.000 8.52 0.00 45.46 4.17
2390 7679 4.012895 GCAACCACGTGGCACGAG 62.013 66.667 42.65 34.61 46.05 4.18
2391 7680 4.012895 CAACCACGTGGCACGAGC 62.013 66.667 42.65 4.67 46.05 5.03
2421 7710 3.782632 GCAGGGAGCCCTTTAGTAC 57.217 57.895 5.03 0.00 45.70 2.73
2422 7711 0.180642 GCAGGGAGCCCTTTAGTACC 59.819 60.000 5.03 0.00 45.70 3.34
2423 7712 0.464452 CAGGGAGCCCTTTAGTACCG 59.536 60.000 5.03 0.00 45.70 4.02
2424 7713 0.690077 AGGGAGCCCTTTAGTACCGG 60.690 60.000 1.14 0.00 45.70 5.28
2425 7714 0.979709 GGGAGCCCTTTAGTACCGGT 60.980 60.000 13.98 13.98 0.00 5.28
2426 7715 0.907486 GGAGCCCTTTAGTACCGGTT 59.093 55.000 15.04 0.00 0.00 4.44
2427 7716 1.406477 GGAGCCCTTTAGTACCGGTTG 60.406 57.143 15.04 0.00 0.00 3.77
2428 7717 1.551883 GAGCCCTTTAGTACCGGTTGA 59.448 52.381 15.04 0.00 0.00 3.18
2429 7718 2.169978 GAGCCCTTTAGTACCGGTTGAT 59.830 50.000 15.04 0.95 0.00 2.57
2430 7719 2.093128 AGCCCTTTAGTACCGGTTGATG 60.093 50.000 15.04 0.00 0.00 3.07
2431 7720 2.355412 GCCCTTTAGTACCGGTTGATGT 60.355 50.000 15.04 0.00 0.00 3.06
2432 7721 3.528532 CCCTTTAGTACCGGTTGATGTC 58.471 50.000 15.04 0.00 0.00 3.06
2433 7722 3.055675 CCCTTTAGTACCGGTTGATGTCA 60.056 47.826 15.04 0.00 0.00 3.58
2434 7723 3.930848 CCTTTAGTACCGGTTGATGTCAC 59.069 47.826 15.04 1.99 0.00 3.67
2435 7724 3.598019 TTAGTACCGGTTGATGTCACC 57.402 47.619 15.04 0.00 0.00 4.02
2436 7725 1.344065 AGTACCGGTTGATGTCACCA 58.656 50.000 15.04 0.00 0.00 4.17
2437 7726 1.695242 AGTACCGGTTGATGTCACCAA 59.305 47.619 15.04 0.00 0.00 3.67
2438 7727 1.802365 GTACCGGTTGATGTCACCAAC 59.198 52.381 15.04 0.90 42.18 3.77
2443 7732 2.172851 GTTGATGTCACCAACCGGTA 57.827 50.000 8.00 0.00 46.94 4.02
2444 7733 2.706890 GTTGATGTCACCAACCGGTAT 58.293 47.619 8.00 0.00 46.94 2.73
2445 7734 3.078837 GTTGATGTCACCAACCGGTATT 58.921 45.455 8.00 0.00 46.94 1.89
2446 7735 4.255301 GTTGATGTCACCAACCGGTATTA 58.745 43.478 8.00 0.00 46.94 0.98
2447 7736 4.554960 TGATGTCACCAACCGGTATTAA 57.445 40.909 8.00 0.00 46.94 1.40
2448 7737 4.907809 TGATGTCACCAACCGGTATTAAA 58.092 39.130 8.00 0.00 46.94 1.52
2449 7738 5.314529 TGATGTCACCAACCGGTATTAAAA 58.685 37.500 8.00 0.00 46.94 1.52
2450 7739 5.946972 TGATGTCACCAACCGGTATTAAAAT 59.053 36.000 8.00 0.00 46.94 1.82
2451 7740 5.630661 TGTCACCAACCGGTATTAAAATG 57.369 39.130 8.00 0.00 46.94 2.32
2452 7741 5.071370 TGTCACCAACCGGTATTAAAATGT 58.929 37.500 8.00 0.00 46.94 2.71
2453 7742 5.535406 TGTCACCAACCGGTATTAAAATGTT 59.465 36.000 8.00 0.00 46.94 2.71
2454 7743 6.040616 TGTCACCAACCGGTATTAAAATGTTT 59.959 34.615 8.00 0.00 46.94 2.83
2455 7744 6.363896 GTCACCAACCGGTATTAAAATGTTTG 59.636 38.462 8.00 0.00 46.94 2.93
2456 7745 5.635700 CACCAACCGGTATTAAAATGTTTGG 59.364 40.000 8.00 10.01 46.94 3.28
2457 7746 5.172205 CCAACCGGTATTAAAATGTTTGGG 58.828 41.667 8.00 0.00 0.00 4.12
2458 7747 5.172205 CAACCGGTATTAAAATGTTTGGGG 58.828 41.667 8.00 0.00 0.00 4.96
2459 7748 3.770388 ACCGGTATTAAAATGTTTGGGGG 59.230 43.478 4.49 0.00 0.00 5.40
2477 7766 4.919774 GGGGGTTTTGGGTTTATGATTT 57.080 40.909 0.00 0.00 0.00 2.17
2478 7767 4.839121 GGGGGTTTTGGGTTTATGATTTC 58.161 43.478 0.00 0.00 0.00 2.17
2479 7768 4.534500 GGGGGTTTTGGGTTTATGATTTCT 59.466 41.667 0.00 0.00 0.00 2.52
2480 7769 5.013704 GGGGGTTTTGGGTTTATGATTTCTT 59.986 40.000 0.00 0.00 0.00 2.52
2481 7770 6.466615 GGGGGTTTTGGGTTTATGATTTCTTT 60.467 38.462 0.00 0.00 0.00 2.52
2482 7771 7.001674 GGGGTTTTGGGTTTATGATTTCTTTT 58.998 34.615 0.00 0.00 0.00 2.27
2483 7772 7.504238 GGGGTTTTGGGTTTATGATTTCTTTTT 59.496 33.333 0.00 0.00 0.00 1.94
2484 7773 8.564574 GGGTTTTGGGTTTATGATTTCTTTTTC 58.435 33.333 0.00 0.00 0.00 2.29
2485 7774 9.114952 GGTTTTGGGTTTATGATTTCTTTTTCA 57.885 29.630 0.00 0.00 0.00 2.69
2526 7815 9.798885 TTTCATTTAATTATTTTTCGTTTGCCG 57.201 25.926 0.00 0.00 38.13 5.69
2527 7816 7.954447 TCATTTAATTATTTTTCGTTTGCCGG 58.046 30.769 0.00 0.00 37.11 6.13
2528 7817 7.599245 TCATTTAATTATTTTTCGTTTGCCGGT 59.401 29.630 1.90 0.00 37.11 5.28
2529 7818 8.861101 CATTTAATTATTTTTCGTTTGCCGGTA 58.139 29.630 1.90 0.00 37.11 4.02
2530 7819 8.983307 TTTAATTATTTTTCGTTTGCCGGTAT 57.017 26.923 1.90 0.00 37.11 2.73
2531 7820 8.983307 TTAATTATTTTTCGTTTGCCGGTATT 57.017 26.923 1.90 0.00 37.11 1.89
2532 7821 7.892778 AATTATTTTTCGTTTGCCGGTATTT 57.107 28.000 1.90 0.00 37.11 1.40
2533 7822 7.892778 ATTATTTTTCGTTTGCCGGTATTTT 57.107 28.000 1.90 0.00 37.11 1.82
2534 7823 8.983307 ATTATTTTTCGTTTGCCGGTATTTTA 57.017 26.923 1.90 0.00 37.11 1.52
2535 7824 6.693761 ATTTTTCGTTTGCCGGTATTTTAC 57.306 33.333 1.90 0.00 37.11 2.01
2536 7825 3.452466 TTCGTTTGCCGGTATTTTACG 57.548 42.857 1.90 6.98 37.11 3.18
2537 7826 2.681706 TCGTTTGCCGGTATTTTACGA 58.318 42.857 1.90 9.29 37.11 3.43
2538 7827 3.260740 TCGTTTGCCGGTATTTTACGAT 58.739 40.909 1.90 0.00 37.11 3.73
2539 7828 4.428209 TCGTTTGCCGGTATTTTACGATA 58.572 39.130 1.90 0.00 37.11 2.92
2540 7829 4.267452 TCGTTTGCCGGTATTTTACGATAC 59.733 41.667 1.90 0.00 37.11 2.24
2541 7830 4.268405 CGTTTGCCGGTATTTTACGATACT 59.732 41.667 1.90 0.00 33.86 2.12
2542 7831 5.555069 CGTTTGCCGGTATTTTACGATACTC 60.555 44.000 1.90 0.00 33.86 2.59
2543 7832 4.652421 TGCCGGTATTTTACGATACTCA 57.348 40.909 1.90 0.00 33.86 3.41
2544 7833 5.204409 TGCCGGTATTTTACGATACTCAT 57.796 39.130 1.90 0.00 33.86 2.90
2545 7834 6.330004 TGCCGGTATTTTACGATACTCATA 57.670 37.500 1.90 0.00 33.86 2.15
2546 7835 6.927416 TGCCGGTATTTTACGATACTCATAT 58.073 36.000 1.90 0.00 33.86 1.78
2547 7836 7.380536 TGCCGGTATTTTACGATACTCATATT 58.619 34.615 1.90 0.00 33.86 1.28
2548 7837 7.329962 TGCCGGTATTTTACGATACTCATATTG 59.670 37.037 1.90 0.00 33.86 1.90
2549 7838 7.330208 GCCGGTATTTTACGATACTCATATTGT 59.670 37.037 1.90 0.00 38.68 2.71
2550 7839 9.844790 CCGGTATTTTACGATACTCATATTGTA 57.155 33.333 0.00 0.00 36.83 2.41
2555 7844 9.740239 ATTTTACGATACTCATATTGTACACGT 57.260 29.630 0.00 0.21 37.38 4.49
2556 7845 9.571810 TTTTACGATACTCATATTGTACACGTT 57.428 29.630 16.49 0.00 37.38 3.99
2559 7848 8.723777 ACGATACTCATATTGTACACGTTATG 57.276 34.615 0.00 4.33 34.15 1.90
2560 7849 7.325338 ACGATACTCATATTGTACACGTTATGC 59.675 37.037 0.00 0.00 34.15 3.14
2561 7850 7.325097 CGATACTCATATTGTACACGTTATGCA 59.675 37.037 0.00 0.00 0.00 3.96
2562 7851 9.140286 GATACTCATATTGTACACGTTATGCAT 57.860 33.333 3.79 3.79 0.00 3.96
2595 7884 8.749026 AATAGAACTTCTAGTAGAACCGATCA 57.251 34.615 8.59 0.00 31.67 2.92
2596 7885 8.927675 ATAGAACTTCTAGTAGAACCGATCAT 57.072 34.615 8.59 0.00 31.67 2.45
2598 7887 8.749026 AGAACTTCTAGTAGAACCGATCATAA 57.251 34.615 8.59 0.00 29.89 1.90
2599 7888 9.357161 AGAACTTCTAGTAGAACCGATCATAAT 57.643 33.333 8.59 0.00 29.89 1.28
2658 7947 8.749026 AATAGAACTTCTAGTAGAACCGATCA 57.251 34.615 8.59 0.00 31.67 2.92
2659 7948 8.927675 ATAGAACTTCTAGTAGAACCGATCAT 57.072 34.615 8.59 0.00 31.67 2.45
2661 7950 8.749026 AGAACTTCTAGTAGAACCGATCATAA 57.251 34.615 8.59 0.00 29.89 1.90
2662 7951 9.357161 AGAACTTCTAGTAGAACCGATCATAAT 57.643 33.333 8.59 0.00 29.89 1.28
2731 8020 9.102453 AGAACTTCTAGTAGAAAATGGGTTAGT 57.898 33.333 13.51 2.28 33.19 2.24
2734 8023 9.544579 ACTTCTAGTAGAAAATGGGTTAGTACT 57.455 33.333 13.51 0.00 33.19 2.73
2736 8025 8.530804 TCTAGTAGAAAATGGGTTAGTACTCC 57.469 38.462 0.00 0.00 0.00 3.85
2737 8026 8.342270 TCTAGTAGAAAATGGGTTAGTACTCCT 58.658 37.037 0.00 0.00 0.00 3.69
2738 8027 9.638176 CTAGTAGAAAATGGGTTAGTACTCCTA 57.362 37.037 0.00 0.00 0.00 2.94
2739 8028 8.536340 AGTAGAAAATGGGTTAGTACTCCTAG 57.464 38.462 0.00 0.00 0.00 3.02
2740 8029 6.809976 AGAAAATGGGTTAGTACTCCTAGG 57.190 41.667 0.82 0.82 0.00 3.02
2741 8030 6.509386 AGAAAATGGGTTAGTACTCCTAGGA 58.491 40.000 11.98 11.98 0.00 2.94
2742 8031 6.612049 AGAAAATGGGTTAGTACTCCTAGGAG 59.388 42.308 33.24 33.24 46.91 3.69
2761 8050 3.549794 GAGTACATACTCCTACCCACGT 58.450 50.000 7.70 0.00 45.33 4.49
2762 8051 3.549794 AGTACATACTCCTACCCACGTC 58.450 50.000 0.00 0.00 0.00 4.34
2763 8052 1.772836 ACATACTCCTACCCACGTCC 58.227 55.000 0.00 0.00 0.00 4.79
2764 8053 1.038280 CATACTCCTACCCACGTCCC 58.962 60.000 0.00 0.00 0.00 4.46
2765 8054 0.105811 ATACTCCTACCCACGTCCCC 60.106 60.000 0.00 0.00 0.00 4.81
2766 8055 1.217057 TACTCCTACCCACGTCCCCT 61.217 60.000 0.00 0.00 0.00 4.79
2767 8056 1.757340 CTCCTACCCACGTCCCCTC 60.757 68.421 0.00 0.00 0.00 4.30
2768 8057 2.038329 CCTACCCACGTCCCCTCA 59.962 66.667 0.00 0.00 0.00 3.86
2769 8058 1.611261 CCTACCCACGTCCCCTCAA 60.611 63.158 0.00 0.00 0.00 3.02
2770 8059 1.196104 CCTACCCACGTCCCCTCAAA 61.196 60.000 0.00 0.00 0.00 2.69
2771 8060 0.688487 CTACCCACGTCCCCTCAAAA 59.312 55.000 0.00 0.00 0.00 2.44
2772 8061 1.072648 CTACCCACGTCCCCTCAAAAA 59.927 52.381 0.00 0.00 0.00 1.94
2792 8081 5.952526 AAAACAATTTACTCCTACCCACG 57.047 39.130 0.00 0.00 0.00 4.94
2793 8082 4.628963 AACAATTTACTCCTACCCACGT 57.371 40.909 0.00 0.00 0.00 4.49
2794 8083 3.934068 ACAATTTACTCCTACCCACGTG 58.066 45.455 9.08 9.08 0.00 4.49
2795 8084 3.267483 CAATTTACTCCTACCCACGTGG 58.733 50.000 28.26 28.26 41.37 4.94
2796 8085 0.609662 TTTACTCCTACCCACGTGGC 59.390 55.000 29.75 0.00 37.83 5.01
2797 8086 0.542467 TTACTCCTACCCACGTGGCA 60.542 55.000 29.75 17.33 37.83 4.92
2798 8087 0.968901 TACTCCTACCCACGTGGCAG 60.969 60.000 29.75 24.92 37.83 4.85
2799 8088 3.665675 CTCCTACCCACGTGGCAGC 62.666 68.421 29.75 0.00 37.83 5.25
2800 8089 3.706373 CCTACCCACGTGGCAGCT 61.706 66.667 29.75 12.75 37.83 4.24
2801 8090 2.347490 CTACCCACGTGGCAGCTT 59.653 61.111 29.75 12.03 37.83 3.74
2802 8091 1.302511 CTACCCACGTGGCAGCTTT 60.303 57.895 29.75 10.27 37.83 3.51
2803 8092 0.889186 CTACCCACGTGGCAGCTTTT 60.889 55.000 29.75 8.54 37.83 2.27
2804 8093 1.169661 TACCCACGTGGCAGCTTTTG 61.170 55.000 29.75 14.99 37.83 2.44
2805 8094 2.336088 CCACGTGGCAGCTTTTGG 59.664 61.111 24.02 0.00 0.00 3.28
2806 8095 2.489275 CCACGTGGCAGCTTTTGGT 61.489 57.895 24.02 0.00 0.00 3.67
2807 8096 1.169661 CCACGTGGCAGCTTTTGGTA 61.170 55.000 24.02 0.00 0.00 3.25
2808 8097 0.665835 CACGTGGCAGCTTTTGGTAA 59.334 50.000 7.95 0.00 0.00 2.85
2809 8098 1.269448 CACGTGGCAGCTTTTGGTAAT 59.731 47.619 7.95 0.00 0.00 1.89
2810 8099 1.539827 ACGTGGCAGCTTTTGGTAATC 59.460 47.619 0.00 0.00 0.00 1.75
2811 8100 1.135402 CGTGGCAGCTTTTGGTAATCC 60.135 52.381 0.00 0.00 0.00 3.01
2812 8101 1.204704 GTGGCAGCTTTTGGTAATCCC 59.795 52.381 0.00 0.00 0.00 3.85
2813 8102 1.203112 TGGCAGCTTTTGGTAATCCCA 60.203 47.619 0.00 0.00 43.27 4.37
2814 8103 1.204704 GGCAGCTTTTGGTAATCCCAC 59.795 52.381 0.00 0.00 45.19 4.61
2815 8104 1.135402 GCAGCTTTTGGTAATCCCACG 60.135 52.381 0.00 0.00 45.19 4.94
2816 8105 1.135402 CAGCTTTTGGTAATCCCACGC 60.135 52.381 0.00 0.00 45.19 5.34
2817 8106 0.885196 GCTTTTGGTAATCCCACGCA 59.115 50.000 0.00 0.00 45.19 5.24
2818 8107 1.271102 GCTTTTGGTAATCCCACGCAA 59.729 47.619 0.00 0.00 45.19 4.85
2819 8108 2.288518 GCTTTTGGTAATCCCACGCAAA 60.289 45.455 0.00 0.00 45.19 3.68
2820 8109 3.616317 GCTTTTGGTAATCCCACGCAAAT 60.616 43.478 0.00 0.00 45.19 2.32
2821 8110 3.584406 TTTGGTAATCCCACGCAAATG 57.416 42.857 0.00 0.00 45.19 2.32
2822 8111 2.498644 TGGTAATCCCACGCAAATGA 57.501 45.000 0.00 0.00 38.72 2.57
2823 8112 2.796557 TGGTAATCCCACGCAAATGAA 58.203 42.857 0.00 0.00 38.72 2.57
2824 8113 2.490115 TGGTAATCCCACGCAAATGAAC 59.510 45.455 0.00 0.00 38.72 3.18
2825 8114 2.752903 GGTAATCCCACGCAAATGAACT 59.247 45.455 0.00 0.00 0.00 3.01
2826 8115 3.181500 GGTAATCCCACGCAAATGAACTC 60.181 47.826 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.961396 ATCATTTGAATATCTGAGCAGCC 57.039 39.130 0.00 0.00 0.00 4.85
50 51 8.787852 AGAAAATTTAGTGTGTGAGATCCTTTC 58.212 33.333 0.00 0.00 0.00 2.62
52 53 9.220767 GTAGAAAATTTAGTGTGTGAGATCCTT 57.779 33.333 0.00 0.00 0.00 3.36
54 55 7.606456 TGGTAGAAAATTTAGTGTGTGAGATCC 59.394 37.037 0.00 0.00 0.00 3.36
63 64 9.777297 AAATTTGCATGGTAGAAAATTTAGTGT 57.223 25.926 4.08 0.00 39.31 3.55
119 120 2.109181 GGCTCATCTACACCCGGC 59.891 66.667 0.00 0.00 0.00 6.13
121 122 1.443407 CCAGGCTCATCTACACCCG 59.557 63.158 0.00 0.00 0.00 5.28
127 128 2.434843 CGGTGCCCAGGCTCATCTA 61.435 63.158 10.58 0.00 42.51 1.98
135 136 2.361610 AGCATTTCGGTGCCCAGG 60.362 61.111 5.03 0.00 46.19 4.45
414 418 6.914665 TCCAGCACCTTATTAGTACTACCTA 58.085 40.000 0.91 0.00 0.00 3.08
483 489 5.636903 TTGCTATAGCTTTCAATCCTCCT 57.363 39.130 24.61 0.00 42.66 3.69
539 545 1.339342 GGGGTGGCGCTAACTAAGAAA 60.339 52.381 9.26 0.00 0.00 2.52
666 880 1.732259 GCACGACATGGTTTACTCTGG 59.268 52.381 0.00 0.00 0.00 3.86
675 889 2.472695 AGTATTGTGCACGACATGGT 57.527 45.000 9.51 0.00 33.40 3.55
690 904 8.378565 CACCCTATGACAAATCCATAGAAGTAT 58.621 37.037 10.67 0.00 43.69 2.12
764 1006 5.416326 ACAAGACAAGCTCGATCTTACTAGT 59.584 40.000 0.39 0.00 31.47 2.57
837 1087 1.800681 GGTCCACGCCATTACAAGC 59.199 57.895 0.00 0.00 0.00 4.01
1305 2296 1.377229 CGGTGGTGGTGGTGGTATT 59.623 57.895 0.00 0.00 0.00 1.89
1503 2572 2.448705 GCAGCGGCTCTTCTCGTTC 61.449 63.158 0.00 0.00 36.96 3.95
1594 2663 2.387309 CGCTGCATGACTTGTAGGG 58.613 57.895 0.00 8.57 42.78 3.53
1656 2725 5.750067 CCTGCAATCCTTTATTTGAAATCGG 59.250 40.000 0.00 0.00 0.00 4.18
1658 2727 7.706607 GGTACCTGCAATCCTTTATTTGAAATC 59.293 37.037 4.06 0.00 0.00 2.17
1850 2957 5.515797 AATCAACGAGATGGAACGATAGA 57.484 39.130 0.00 0.00 36.96 1.98
1875 2982 7.797819 AGCGAGAGAAACTTAAAATTGTGTAG 58.202 34.615 0.00 0.00 0.00 2.74
1905 7148 8.738645 ATCTCATAATACCAGTCAGGAAAAAC 57.261 34.615 0.00 0.00 41.22 2.43
1941 7184 3.069980 GACACTCGCAGGAGCCGAT 62.070 63.158 0.00 0.00 44.48 4.18
1942 7185 3.749064 GACACTCGCAGGAGCCGA 61.749 66.667 0.00 0.00 44.48 5.54
1955 7202 5.203060 AGAGTTAGGAGTGAAGTTGACAC 57.797 43.478 0.00 0.00 38.38 3.67
1988 7236 3.316308 ACGCTGCTCTTGTTCAATTTTCT 59.684 39.130 0.00 0.00 0.00 2.52
2009 7257 4.076394 TCCCACATGTTAGCCAAAGTTAC 58.924 43.478 0.00 0.00 0.00 2.50
2012 7260 2.969821 TCCCACATGTTAGCCAAAGT 57.030 45.000 0.00 0.00 0.00 2.66
2020 7268 1.677518 GGCGTCACATCCCACATGTTA 60.678 52.381 0.00 0.00 0.00 2.41
2021 7269 0.960364 GGCGTCACATCCCACATGTT 60.960 55.000 0.00 0.00 0.00 2.71
2022 7270 1.377202 GGCGTCACATCCCACATGT 60.377 57.895 0.00 0.00 0.00 3.21
2023 7271 2.114670 GGGCGTCACATCCCACATG 61.115 63.158 0.00 0.00 42.18 3.21
2024 7272 2.272146 GGGCGTCACATCCCACAT 59.728 61.111 0.00 0.00 42.18 3.21
2028 7276 3.196901 TGTATATATGGGCGTCACATCCC 59.803 47.826 0.00 0.00 42.93 3.85
2029 7277 4.465632 TGTATATATGGGCGTCACATCC 57.534 45.455 0.00 0.00 0.00 3.51
2030 7278 4.811024 CCATGTATATATGGGCGTCACATC 59.189 45.833 18.38 0.00 43.16 3.06
2031 7279 4.769688 CCATGTATATATGGGCGTCACAT 58.230 43.478 18.38 0.00 43.16 3.21
2032 7280 3.618752 GCCATGTATATATGGGCGTCACA 60.619 47.826 24.99 0.00 46.23 3.58
2033 7281 2.936498 GCCATGTATATATGGGCGTCAC 59.064 50.000 24.99 7.89 46.23 3.67
2034 7282 2.569404 TGCCATGTATATATGGGCGTCA 59.431 45.455 24.99 14.15 46.23 4.35
2035 7283 2.936498 GTGCCATGTATATATGGGCGTC 59.064 50.000 24.99 12.09 46.23 5.19
2036 7284 2.571653 AGTGCCATGTATATATGGGCGT 59.428 45.455 24.99 9.83 46.23 5.68
2037 7285 3.118629 AGAGTGCCATGTATATATGGGCG 60.119 47.826 24.99 5.48 46.23 6.13
2038 7286 4.194640 CAGAGTGCCATGTATATATGGGC 58.805 47.826 24.99 18.37 46.23 5.36
2039 7287 5.426689 ACAGAGTGCCATGTATATATGGG 57.573 43.478 24.99 12.67 46.23 4.00
2041 7289 7.761704 GGAAGTACAGAGTGCCATGTATATATG 59.238 40.741 2.59 2.59 34.60 1.78
2042 7290 7.093289 GGGAAGTACAGAGTGCCATGTATATAT 60.093 40.741 0.00 0.00 34.60 0.86
2043 7291 6.210784 GGGAAGTACAGAGTGCCATGTATATA 59.789 42.308 0.00 0.00 34.60 0.86
2044 7292 5.012148 GGGAAGTACAGAGTGCCATGTATAT 59.988 44.000 0.00 0.00 34.60 0.86
2061 7309 2.306255 GAATGGCTCCGCGGGAAGTA 62.306 60.000 27.83 10.15 0.00 2.24
2074 7322 1.203287 GCTCCAACTCCTTTGAATGGC 59.797 52.381 0.00 0.00 37.39 4.40
2109 7358 2.179427 TCGAGCAAAGGGAGATCTTCA 58.821 47.619 2.72 0.00 0.00 3.02
2116 7365 1.480137 AGTGAGATCGAGCAAAGGGAG 59.520 52.381 2.38 0.00 0.00 4.30
2122 7371 1.256812 TGTGGAGTGAGATCGAGCAA 58.743 50.000 2.38 0.00 0.00 3.91
2127 7376 3.906014 ATCGTATGTGGAGTGAGATCG 57.094 47.619 0.00 0.00 0.00 3.69
2142 7391 9.745880 GGTAATCTTCATTCTTACTGAATCGTA 57.254 33.333 0.00 0.00 43.00 3.43
2147 7396 9.231297 CAAAGGGTAATCTTCATTCTTACTGAA 57.769 33.333 0.00 0.00 39.24 3.02
2176 7425 1.696884 TGATGAAGTACACCAGTGCCA 59.303 47.619 0.00 0.00 0.00 4.92
2177 7426 2.472695 TGATGAAGTACACCAGTGCC 57.527 50.000 0.00 0.00 0.00 5.01
2178 7427 4.256920 AGAATGATGAAGTACACCAGTGC 58.743 43.478 0.00 0.00 0.00 4.40
2180 7429 5.934625 GTCAAGAATGATGAAGTACACCAGT 59.065 40.000 0.00 0.00 38.01 4.00
2181 7430 5.934043 TGTCAAGAATGATGAAGTACACCAG 59.066 40.000 0.00 0.00 38.01 4.00
2182 7431 5.863965 TGTCAAGAATGATGAAGTACACCA 58.136 37.500 0.00 0.00 38.01 4.17
2183 7432 6.801539 TTGTCAAGAATGATGAAGTACACC 57.198 37.500 0.00 0.00 38.01 4.16
2227 7516 3.243336 GTTCTGCACTAGTAAGGTGTCG 58.757 50.000 0.00 0.00 37.07 4.35
2228 7517 3.586892 GGTTCTGCACTAGTAAGGTGTC 58.413 50.000 0.00 0.00 37.07 3.67
2229 7518 2.029290 CGGTTCTGCACTAGTAAGGTGT 60.029 50.000 0.00 0.00 37.07 4.16
2230 7519 2.607187 CGGTTCTGCACTAGTAAGGTG 58.393 52.381 0.00 0.00 37.70 4.00
2231 7520 1.549170 CCGGTTCTGCACTAGTAAGGT 59.451 52.381 0.00 0.00 0.00 3.50
2232 7521 1.134788 CCCGGTTCTGCACTAGTAAGG 60.135 57.143 0.00 0.00 0.00 2.69
2233 7522 1.739371 GCCCGGTTCTGCACTAGTAAG 60.739 57.143 0.00 0.00 0.00 2.34
2234 7523 0.248289 GCCCGGTTCTGCACTAGTAA 59.752 55.000 0.00 0.00 0.00 2.24
2235 7524 0.901114 TGCCCGGTTCTGCACTAGTA 60.901 55.000 0.00 0.00 31.31 1.82
2236 7525 1.764571 TTGCCCGGTTCTGCACTAGT 61.765 55.000 0.00 0.00 37.18 2.57
2237 7526 0.392998 ATTGCCCGGTTCTGCACTAG 60.393 55.000 0.00 0.00 37.18 2.57
2238 7527 0.906066 TATTGCCCGGTTCTGCACTA 59.094 50.000 0.00 0.00 37.18 2.74
2239 7528 0.392998 CTATTGCCCGGTTCTGCACT 60.393 55.000 0.00 0.00 37.18 4.40
2240 7529 1.993369 GCTATTGCCCGGTTCTGCAC 61.993 60.000 0.00 0.00 37.18 4.57
2241 7530 1.748879 GCTATTGCCCGGTTCTGCA 60.749 57.895 0.00 0.00 35.27 4.41
2242 7531 1.748879 TGCTATTGCCCGGTTCTGC 60.749 57.895 0.00 0.00 38.71 4.26
2243 7532 1.376609 GGTGCTATTGCCCGGTTCTG 61.377 60.000 0.00 0.00 38.71 3.02
2244 7533 1.077716 GGTGCTATTGCCCGGTTCT 60.078 57.895 0.00 0.00 38.71 3.01
2245 7534 2.469516 CGGTGCTATTGCCCGGTTC 61.470 63.158 16.86 0.00 43.94 3.62
2246 7535 2.437716 CGGTGCTATTGCCCGGTT 60.438 61.111 16.86 0.00 43.94 4.44
2249 7538 2.437716 AACCGGTGCTATTGCCCG 60.438 61.111 8.52 17.41 45.75 6.13
2250 7539 2.469516 CGAACCGGTGCTATTGCCC 61.470 63.158 8.52 0.00 38.71 5.36
2251 7540 0.460635 TACGAACCGGTGCTATTGCC 60.461 55.000 8.52 0.00 38.71 4.52
2252 7541 1.361793 TTACGAACCGGTGCTATTGC 58.638 50.000 8.52 0.00 40.20 3.56
2253 7542 2.222953 GCTTTACGAACCGGTGCTATTG 60.223 50.000 8.52 0.00 0.00 1.90
2254 7543 2.004733 GCTTTACGAACCGGTGCTATT 58.995 47.619 8.52 0.00 0.00 1.73
2255 7544 1.648504 GCTTTACGAACCGGTGCTAT 58.351 50.000 8.52 0.00 0.00 2.97
2256 7545 0.390209 GGCTTTACGAACCGGTGCTA 60.390 55.000 8.52 0.00 0.00 3.49
2257 7546 1.670083 GGCTTTACGAACCGGTGCT 60.670 57.895 8.52 0.00 0.00 4.40
2258 7547 2.683859 GGGCTTTACGAACCGGTGC 61.684 63.158 8.52 4.53 0.00 5.01
2259 7548 0.604511 AAGGGCTTTACGAACCGGTG 60.605 55.000 8.52 0.00 0.00 4.94
2260 7549 0.109153 AAAGGGCTTTACGAACCGGT 59.891 50.000 0.00 0.00 0.00 5.28
2261 7550 2.004733 CTAAAGGGCTTTACGAACCGG 58.995 52.381 0.00 0.00 34.23 5.28
2262 7551 2.414138 CACTAAAGGGCTTTACGAACCG 59.586 50.000 0.00 0.00 34.23 4.44
2263 7552 2.161012 GCACTAAAGGGCTTTACGAACC 59.839 50.000 0.00 0.00 34.23 3.62
2264 7553 2.161012 GGCACTAAAGGGCTTTACGAAC 59.839 50.000 3.89 0.00 34.23 3.95
2265 7554 2.429478 GGCACTAAAGGGCTTTACGAA 58.571 47.619 3.89 0.00 34.23 3.85
2266 7555 1.673626 CGGCACTAAAGGGCTTTACGA 60.674 52.381 3.89 0.00 34.23 3.43
2267 7556 0.725117 CGGCACTAAAGGGCTTTACG 59.275 55.000 3.89 0.00 34.23 3.18
2268 7557 1.092348 CCGGCACTAAAGGGCTTTAC 58.908 55.000 3.89 0.00 34.23 2.01
2269 7558 0.694196 ACCGGCACTAAAGGGCTTTA 59.306 50.000 0.00 0.00 34.23 1.85
2270 7559 0.178973 AACCGGCACTAAAGGGCTTT 60.179 50.000 0.00 0.00 36.63 3.51
2271 7560 0.178973 AAACCGGCACTAAAGGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
2272 7561 0.893727 CAAACCGGCACTAAAGGGCT 60.894 55.000 0.00 0.00 0.00 5.19
2273 7562 1.584495 CAAACCGGCACTAAAGGGC 59.416 57.895 0.00 0.00 0.00 5.19
2274 7563 0.538746 ACCAAACCGGCACTAAAGGG 60.539 55.000 0.00 0.00 39.03 3.95
2275 7564 2.188062 TACCAAACCGGCACTAAAGG 57.812 50.000 0.00 0.00 39.03 3.11
2276 7565 2.227149 GGTTACCAAACCGGCACTAAAG 59.773 50.000 0.00 0.00 45.61 1.85
2277 7566 2.228925 GGTTACCAAACCGGCACTAAA 58.771 47.619 0.00 0.00 45.61 1.85
2278 7567 1.894881 GGTTACCAAACCGGCACTAA 58.105 50.000 0.00 0.00 45.61 2.24
2279 7568 3.629548 GGTTACCAAACCGGCACTA 57.370 52.632 0.00 0.00 45.61 2.74
2280 7569 4.486887 GGTTACCAAACCGGCACT 57.513 55.556 0.00 0.00 45.61 4.40
2287 7576 0.873721 TTTAGCGCCGGTTACCAAAC 59.126 50.000 2.29 0.00 34.66 2.93
2288 7577 1.602311 TTTTAGCGCCGGTTACCAAA 58.398 45.000 2.29 0.00 0.00 3.28
2289 7578 1.469308 CATTTTAGCGCCGGTTACCAA 59.531 47.619 2.29 0.00 0.00 3.67
2290 7579 1.088306 CATTTTAGCGCCGGTTACCA 58.912 50.000 2.29 0.00 0.00 3.25
2291 7580 1.089112 ACATTTTAGCGCCGGTTACC 58.911 50.000 2.29 0.00 0.00 2.85
2292 7581 2.286025 CCTACATTTTAGCGCCGGTTAC 59.714 50.000 2.29 0.00 0.00 2.50
2293 7582 2.553086 CCTACATTTTAGCGCCGGTTA 58.447 47.619 2.29 0.00 0.00 2.85
2294 7583 1.375551 CCTACATTTTAGCGCCGGTT 58.624 50.000 2.29 0.00 0.00 4.44
2295 7584 1.093496 GCCTACATTTTAGCGCCGGT 61.093 55.000 2.29 0.00 0.00 5.28
2296 7585 1.092921 TGCCTACATTTTAGCGCCGG 61.093 55.000 2.29 0.00 0.00 6.13
2297 7586 0.027586 GTGCCTACATTTTAGCGCCG 59.972 55.000 2.29 0.00 0.00 6.46
2298 7587 1.379527 AGTGCCTACATTTTAGCGCC 58.620 50.000 2.29 0.00 36.41 6.53
2299 7588 4.588278 CTTTAGTGCCTACATTTTAGCGC 58.412 43.478 0.00 0.00 36.00 5.92
2300 7589 4.588278 GCTTTAGTGCCTACATTTTAGCG 58.412 43.478 0.00 0.00 0.00 4.26
2333 7622 1.208776 CTGAACCGGTACTAAAGGGGG 59.791 57.143 8.00 0.00 0.00 5.40
2334 7623 1.406477 GCTGAACCGGTACTAAAGGGG 60.406 57.143 8.00 0.00 0.00 4.79
2335 7624 1.276989 TGCTGAACCGGTACTAAAGGG 59.723 52.381 8.00 0.00 0.00 3.95
2336 7625 2.344025 GTGCTGAACCGGTACTAAAGG 58.656 52.381 8.00 0.00 0.00 3.11
2337 7626 1.990563 CGTGCTGAACCGGTACTAAAG 59.009 52.381 8.00 2.29 0.00 1.85
2338 7627 1.612950 TCGTGCTGAACCGGTACTAAA 59.387 47.619 8.00 0.00 0.00 1.85
2339 7628 1.246649 TCGTGCTGAACCGGTACTAA 58.753 50.000 8.00 0.00 0.00 2.24
2340 7629 1.246649 TTCGTGCTGAACCGGTACTA 58.753 50.000 8.00 0.00 0.00 1.82
2341 7630 2.043625 TTCGTGCTGAACCGGTACT 58.956 52.632 8.00 0.00 0.00 2.73
2342 7631 4.659480 TTCGTGCTGAACCGGTAC 57.341 55.556 8.00 0.00 0.00 3.34
2354 7643 1.296056 CCCTTTAGCACCGGTTCGTG 61.296 60.000 2.97 0.00 36.80 4.35
2355 7644 1.004200 CCCTTTAGCACCGGTTCGT 60.004 57.895 2.97 0.00 0.00 3.85
2356 7645 2.396157 GCCCTTTAGCACCGGTTCG 61.396 63.158 2.97 0.00 0.00 3.95
2357 7646 0.891904 TTGCCCTTTAGCACCGGTTC 60.892 55.000 2.97 0.00 43.97 3.62
2358 7647 1.151908 TTGCCCTTTAGCACCGGTT 59.848 52.632 2.97 0.00 43.97 4.44
2359 7648 1.602605 GTTGCCCTTTAGCACCGGT 60.603 57.895 0.00 0.00 43.97 5.28
2360 7649 2.340328 GGTTGCCCTTTAGCACCGG 61.340 63.158 0.00 0.00 43.97 5.28
2361 7650 1.602323 TGGTTGCCCTTTAGCACCG 60.602 57.895 0.00 0.00 43.97 4.94
2362 7651 1.862602 CGTGGTTGCCCTTTAGCACC 61.863 60.000 0.00 0.00 43.97 5.01
2363 7652 1.170290 ACGTGGTTGCCCTTTAGCAC 61.170 55.000 0.00 0.00 43.97 4.40
2364 7653 1.149627 ACGTGGTTGCCCTTTAGCA 59.850 52.632 0.00 0.00 42.17 3.49
2365 7654 1.579429 CACGTGGTTGCCCTTTAGC 59.421 57.895 7.95 0.00 0.00 3.09
2366 7655 1.862602 GCCACGTGGTTGCCCTTTAG 61.863 60.000 33.92 6.07 37.57 1.85
2367 7656 1.899534 GCCACGTGGTTGCCCTTTA 60.900 57.895 33.92 0.00 37.57 1.85
2368 7657 3.223589 GCCACGTGGTTGCCCTTT 61.224 61.111 33.92 0.00 37.57 3.11
2369 7658 4.514585 TGCCACGTGGTTGCCCTT 62.515 61.111 33.92 0.00 37.57 3.95
2373 7662 4.012895 CTCGTGCCACGTGGTTGC 62.013 66.667 33.92 20.95 43.14 4.17
2374 7663 4.012895 GCTCGTGCCACGTGGTTG 62.013 66.667 33.92 23.28 43.14 3.77
2406 7695 0.979709 ACCGGTACTAAAGGGCTCCC 60.980 60.000 4.49 0.00 0.00 4.30
2407 7696 0.907486 AACCGGTACTAAAGGGCTCC 59.093 55.000 8.00 0.00 0.00 4.70
2408 7697 1.551883 TCAACCGGTACTAAAGGGCTC 59.448 52.381 8.00 0.00 0.00 4.70
2409 7698 1.648116 TCAACCGGTACTAAAGGGCT 58.352 50.000 8.00 0.00 0.00 5.19
2410 7699 2.285977 CATCAACCGGTACTAAAGGGC 58.714 52.381 8.00 0.00 0.00 5.19
2411 7700 3.055675 TGACATCAACCGGTACTAAAGGG 60.056 47.826 8.00 0.00 0.00 3.95
2412 7701 3.930848 GTGACATCAACCGGTACTAAAGG 59.069 47.826 8.00 0.00 0.00 3.11
2413 7702 3.930848 GGTGACATCAACCGGTACTAAAG 59.069 47.826 8.00 0.00 0.00 1.85
2414 7703 3.324268 TGGTGACATCAACCGGTACTAAA 59.676 43.478 8.00 0.00 33.40 1.85
2415 7704 2.898612 TGGTGACATCAACCGGTACTAA 59.101 45.455 8.00 0.00 33.40 2.24
2416 7705 2.527497 TGGTGACATCAACCGGTACTA 58.473 47.619 8.00 0.00 33.40 1.82
2417 7706 1.344065 TGGTGACATCAACCGGTACT 58.656 50.000 8.00 0.00 33.40 2.73
2418 7707 1.802365 GTTGGTGACATCAACCGGTAC 59.198 52.381 19.08 0.00 42.32 3.34
2419 7708 2.172851 GTTGGTGACATCAACCGGTA 57.827 50.000 19.08 0.00 42.32 4.02
2420 7709 3.015516 GTTGGTGACATCAACCGGT 57.984 52.632 19.08 0.00 42.32 5.28
2434 7723 5.172205 CCCAAACATTTTAATACCGGTTGG 58.828 41.667 15.04 9.73 42.84 3.77
2435 7724 5.172205 CCCCAAACATTTTAATACCGGTTG 58.828 41.667 15.04 5.32 0.00 3.77
2436 7725 4.223255 CCCCCAAACATTTTAATACCGGTT 59.777 41.667 15.04 0.00 0.00 4.44
2437 7726 3.770388 CCCCCAAACATTTTAATACCGGT 59.230 43.478 13.98 13.98 0.00 5.28
2438 7727 4.394439 CCCCCAAACATTTTAATACCGG 57.606 45.455 0.00 0.00 0.00 5.28
2456 7745 4.534500 AGAAATCATAAACCCAAAACCCCC 59.466 41.667 0.00 0.00 0.00 5.40
2457 7746 5.755409 AGAAATCATAAACCCAAAACCCC 57.245 39.130 0.00 0.00 0.00 4.95
2458 7747 8.458573 AAAAAGAAATCATAAACCCAAAACCC 57.541 30.769 0.00 0.00 0.00 4.11
2459 7748 9.114952 TGAAAAAGAAATCATAAACCCAAAACC 57.885 29.630 0.00 0.00 0.00 3.27
2515 7804 8.738722 AGTATCGTAAAATACCGGCAAACGAAA 61.739 37.037 15.64 0.00 43.93 3.46
2516 7805 7.338475 AGTATCGTAAAATACCGGCAAACGAA 61.338 38.462 15.64 6.30 43.93 3.85
2517 7806 5.906841 AGTATCGTAAAATACCGGCAAACGA 60.907 40.000 0.00 9.45 43.93 3.85
2518 7807 3.661758 ATCGTAAAATACCGGCAAACG 57.338 42.857 0.00 3.52 43.80 3.60
2519 7808 5.291614 TGAGTATCGTAAAATACCGGCAAAC 59.708 40.000 0.00 0.00 38.61 2.93
2520 7809 5.417811 TGAGTATCGTAAAATACCGGCAAA 58.582 37.500 0.00 0.00 38.61 3.68
2521 7810 5.008619 TGAGTATCGTAAAATACCGGCAA 57.991 39.130 0.00 0.00 38.61 4.52
2522 7811 4.652421 TGAGTATCGTAAAATACCGGCA 57.348 40.909 0.00 0.00 38.61 5.69
2523 7812 7.330208 ACAATATGAGTATCGTAAAATACCGGC 59.670 37.037 0.00 0.00 40.51 6.13
2524 7813 8.752766 ACAATATGAGTATCGTAAAATACCGG 57.247 34.615 0.00 0.00 40.51 5.28
2529 7818 9.740239 ACGTGTACAATATGAGTATCGTAAAAT 57.260 29.630 0.00 0.00 40.51 1.82
2530 7819 9.571810 AACGTGTACAATATGAGTATCGTAAAA 57.428 29.630 0.00 0.00 40.51 1.52
2533 7822 9.815936 CATAACGTGTACAATATGAGTATCGTA 57.184 33.333 14.78 1.67 41.53 3.43
2534 7823 7.325338 GCATAACGTGTACAATATGAGTATCGT 59.675 37.037 20.43 10.51 38.61 3.73
2535 7824 7.325097 TGCATAACGTGTACAATATGAGTATCG 59.675 37.037 20.43 9.99 38.61 2.92
2536 7825 8.515473 TGCATAACGTGTACAATATGAGTATC 57.485 34.615 20.43 8.97 0.00 2.24
2569 7858 9.186837 TGATCGGTTCTACTAGAAGTTCTATTT 57.813 33.333 12.98 6.28 34.42 1.40
2570 7859 8.749026 TGATCGGTTCTACTAGAAGTTCTATT 57.251 34.615 12.98 10.18 34.42 1.73
2571 7860 8.927675 ATGATCGGTTCTACTAGAAGTTCTAT 57.072 34.615 12.98 6.58 34.42 1.98
2572 7861 9.842775 TTATGATCGGTTCTACTAGAAGTTCTA 57.157 33.333 12.05 12.05 34.42 2.10
2573 7862 8.749026 TTATGATCGGTTCTACTAGAAGTTCT 57.251 34.615 10.87 10.87 34.42 3.01
2632 7921 9.186837 TGATCGGTTCTACTAGAAGTTCTATTT 57.813 33.333 12.98 6.28 34.42 1.40
2633 7922 8.749026 TGATCGGTTCTACTAGAAGTTCTATT 57.251 34.615 12.98 10.18 34.42 1.73
2634 7923 8.927675 ATGATCGGTTCTACTAGAAGTTCTAT 57.072 34.615 12.98 6.58 34.42 1.98
2635 7924 9.842775 TTATGATCGGTTCTACTAGAAGTTCTA 57.157 33.333 12.05 12.05 34.42 2.10
2636 7925 8.749026 TTATGATCGGTTCTACTAGAAGTTCT 57.251 34.615 10.87 10.87 34.42 3.01
2705 7994 9.102453 ACTAACCCATTTTCTACTAGAAGTTCT 57.898 33.333 10.87 10.87 35.37 3.01
2708 7997 9.544579 AGTACTAACCCATTTTCTACTAGAAGT 57.455 33.333 0.00 0.00 35.37 3.01
2710 7999 8.975295 GGAGTACTAACCCATTTTCTACTAGAA 58.025 37.037 0.00 0.00 31.28 2.10
2711 8000 8.342270 AGGAGTACTAACCCATTTTCTACTAGA 58.658 37.037 0.00 0.00 0.00 2.43
2712 8001 8.536340 AGGAGTACTAACCCATTTTCTACTAG 57.464 38.462 0.00 0.00 0.00 2.57
2713 8002 9.638176 CTAGGAGTACTAACCCATTTTCTACTA 57.362 37.037 0.00 0.00 0.00 1.82
2714 8003 7.564292 CCTAGGAGTACTAACCCATTTTCTACT 59.436 40.741 1.05 0.00 0.00 2.57
2715 8004 7.562821 TCCTAGGAGTACTAACCCATTTTCTAC 59.437 40.741 7.62 0.00 0.00 2.59
2716 8005 7.655403 TCCTAGGAGTACTAACCCATTTTCTA 58.345 38.462 7.62 0.00 0.00 2.10
2717 8006 6.509386 TCCTAGGAGTACTAACCCATTTTCT 58.491 40.000 7.62 0.00 0.00 2.52
2718 8007 6.803366 TCCTAGGAGTACTAACCCATTTTC 57.197 41.667 7.62 0.00 0.00 2.29
2719 8008 6.809976 CTCCTAGGAGTACTAACCCATTTT 57.190 41.667 28.12 0.00 37.47 1.82
2741 8030 3.549794 GACGTGGGTAGGAGTATGTACT 58.450 50.000 0.00 0.00 39.71 2.73
2742 8031 2.620585 GGACGTGGGTAGGAGTATGTAC 59.379 54.545 0.00 0.00 0.00 2.90
2743 8032 2.423373 GGGACGTGGGTAGGAGTATGTA 60.423 54.545 0.00 0.00 0.00 2.29
2744 8033 1.687368 GGGACGTGGGTAGGAGTATGT 60.687 57.143 0.00 0.00 0.00 2.29
2745 8034 1.038280 GGGACGTGGGTAGGAGTATG 58.962 60.000 0.00 0.00 0.00 2.39
2746 8035 0.105811 GGGGACGTGGGTAGGAGTAT 60.106 60.000 0.00 0.00 0.00 2.12
2747 8036 1.217057 AGGGGACGTGGGTAGGAGTA 61.217 60.000 0.00 0.00 0.00 2.59
2748 8037 2.038490 GGGGACGTGGGTAGGAGT 59.962 66.667 0.00 0.00 0.00 3.85
2749 8038 1.757340 GAGGGGACGTGGGTAGGAG 60.757 68.421 0.00 0.00 0.00 3.69
2750 8039 2.096707 TTGAGGGGACGTGGGTAGGA 62.097 60.000 0.00 0.00 0.00 2.94
2751 8040 1.196104 TTTGAGGGGACGTGGGTAGG 61.196 60.000 0.00 0.00 0.00 3.18
2752 8041 0.688487 TTTTGAGGGGACGTGGGTAG 59.312 55.000 0.00 0.00 0.00 3.18
2753 8042 1.138568 TTTTTGAGGGGACGTGGGTA 58.861 50.000 0.00 0.00 0.00 3.69
2754 8043 1.924352 TTTTTGAGGGGACGTGGGT 59.076 52.632 0.00 0.00 0.00 4.51
2755 8044 4.911901 TTTTTGAGGGGACGTGGG 57.088 55.556 0.00 0.00 0.00 4.61
2769 8058 5.829391 ACGTGGGTAGGAGTAAATTGTTTTT 59.171 36.000 0.00 0.00 0.00 1.94
2770 8059 5.239963 CACGTGGGTAGGAGTAAATTGTTTT 59.760 40.000 7.95 0.00 0.00 2.43
2771 8060 4.758165 CACGTGGGTAGGAGTAAATTGTTT 59.242 41.667 7.95 0.00 0.00 2.83
2772 8061 4.320870 CACGTGGGTAGGAGTAAATTGTT 58.679 43.478 7.95 0.00 0.00 2.83
2773 8062 3.307199 CCACGTGGGTAGGAGTAAATTGT 60.307 47.826 27.57 0.00 0.00 2.71
2774 8063 3.267483 CCACGTGGGTAGGAGTAAATTG 58.733 50.000 27.57 0.00 0.00 2.32
2775 8064 2.355412 GCCACGTGGGTAGGAGTAAATT 60.355 50.000 34.58 0.00 39.65 1.82
2776 8065 1.208776 GCCACGTGGGTAGGAGTAAAT 59.791 52.381 34.58 0.00 39.65 1.40
2777 8066 0.609662 GCCACGTGGGTAGGAGTAAA 59.390 55.000 34.58 0.00 39.65 2.01
2778 8067 0.542467 TGCCACGTGGGTAGGAGTAA 60.542 55.000 34.58 0.00 39.65 2.24
2779 8068 0.968901 CTGCCACGTGGGTAGGAGTA 60.969 60.000 34.58 6.53 44.95 2.59
2780 8069 2.203728 TGCCACGTGGGTAGGAGT 60.204 61.111 34.58 0.00 39.65 3.85
2781 8070 2.579201 CTGCCACGTGGGTAGGAG 59.421 66.667 34.58 15.98 44.95 3.69
2785 8074 1.149627 AAAAGCTGCCACGTGGGTA 59.850 52.632 34.58 14.77 39.65 3.69
2786 8075 2.123897 AAAAGCTGCCACGTGGGT 60.124 55.556 34.58 12.89 39.65 4.51
2787 8076 2.336088 CAAAAGCTGCCACGTGGG 59.664 61.111 34.58 20.60 40.85 4.61
2788 8077 1.169661 TACCAAAAGCTGCCACGTGG 61.170 55.000 30.66 30.66 38.53 4.94
2789 8078 0.665835 TTACCAAAAGCTGCCACGTG 59.334 50.000 9.08 9.08 0.00 4.49
2790 8079 1.539827 GATTACCAAAAGCTGCCACGT 59.460 47.619 0.00 0.00 0.00 4.49
2791 8080 1.135402 GGATTACCAAAAGCTGCCACG 60.135 52.381 0.00 0.00 35.97 4.94
2792 8081 1.204704 GGGATTACCAAAAGCTGCCAC 59.795 52.381 0.00 0.00 39.85 5.01
2793 8082 1.555967 GGGATTACCAAAAGCTGCCA 58.444 50.000 0.00 0.00 39.85 4.92
2804 8093 2.752903 AGTTCATTTGCGTGGGATTACC 59.247 45.455 0.00 0.00 40.81 2.85
2805 8094 4.016113 GAGTTCATTTGCGTGGGATTAC 57.984 45.455 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.