Multiple sequence alignment - TraesCS7A01G447400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G447400 chr7A 100.000 5034 0 0 1 5034 642148213 642153246 0.000000e+00 9297.0
1 TraesCS7A01G447400 chr7A 85.135 592 42 20 1 550 641463338 641462751 9.460000e-157 564.0
2 TraesCS7A01G447400 chr7A 96.063 254 10 0 294 547 642117481 642117734 1.010000e-111 414.0
3 TraesCS7A01G447400 chr7A 82.677 381 38 19 190 550 90384639 90384267 3.780000e-81 313.0
4 TraesCS7A01G447400 chr7A 81.894 359 40 18 209 550 34453540 34453190 3.840000e-71 279.0
5 TraesCS7A01G447400 chr7A 100.000 100 0 0 4913 5012 493674245 493674146 8.610000e-43 185.0
6 TraesCS7A01G447400 chr7A 98.000 100 2 0 4913 5012 163155581 163155680 1.860000e-39 174.0
7 TraesCS7A01G447400 chr7A 79.562 137 20 7 22 153 678589207 678589340 1.930000e-14 91.6
8 TraesCS7A01G447400 chr7A 95.349 43 2 0 160 202 200514899 200514857 9.040000e-08 69.4
9 TraesCS7A01G447400 chr7A 100.000 36 0 0 1477 1512 642149617 642149652 3.250000e-07 67.6
10 TraesCS7A01G447400 chr3B 99.703 4373 10 1 544 4913 434346406 434342034 0.000000e+00 8000.0
11 TraesCS7A01G447400 chr3B 96.436 2750 75 9 1564 4299 512102128 512099388 0.000000e+00 4514.0
12 TraesCS7A01G447400 chr3B 93.412 2459 143 9 1682 4140 306886720 306889159 0.000000e+00 3626.0
13 TraesCS7A01G447400 chr3B 88.629 897 54 16 545 1405 512103015 512102131 0.000000e+00 1048.0
14 TraesCS7A01G447400 chr3B 93.387 620 18 8 4295 4913 512099354 512098757 0.000000e+00 896.0
15 TraesCS7A01G447400 chr3B 79.692 389 62 16 166 547 499074422 499074800 1.070000e-66 265.0
16 TraesCS7A01G447400 chr3B 100.000 36 0 0 1477 1512 434345542 434345507 3.250000e-07 67.6
17 TraesCS7A01G447400 chr5B 98.028 2738 46 2 1564 4301 675602184 675599455 0.000000e+00 4750.0
18 TraesCS7A01G447400 chr5B 96.201 2764 67 16 1564 4299 23257946 23260699 0.000000e+00 4488.0
19 TraesCS7A01G447400 chr5B 95.893 1193 25 4 544 1728 623880353 623881529 0.000000e+00 1910.0
20 TraesCS7A01G447400 chr5B 95.557 1193 23 5 544 1728 627484638 627485808 0.000000e+00 1882.0
21 TraesCS7A01G447400 chr5B 94.771 937 17 5 3977 4913 627485801 627486705 0.000000e+00 1430.0
22 TraesCS7A01G447400 chr5B 94.664 937 18 5 3977 4913 623881522 623882426 0.000000e+00 1424.0
23 TraesCS7A01G447400 chr5B 93.203 868 31 8 542 1405 675603030 675602187 0.000000e+00 1251.0
24 TraesCS7A01G447400 chr5B 89.298 897 51 20 545 1405 23257056 23257943 0.000000e+00 1083.0
25 TraesCS7A01G447400 chr5B 96.774 620 19 1 4295 4913 675599423 675598804 0.000000e+00 1033.0
26 TraesCS7A01G447400 chr5B 93.548 620 17 4 4295 4913 23260733 23261330 0.000000e+00 902.0
27 TraesCS7A01G447400 chr5B 81.188 101 6 6 1350 1449 623881340 623881428 9.040000e-08 69.4
28 TraesCS7A01G447400 chr5B 81.188 101 6 6 1350 1449 627485619 627485707 9.040000e-08 69.4
29 TraesCS7A01G447400 chr5B 100.000 36 0 0 1477 1512 623881206 623881241 3.250000e-07 67.6
30 TraesCS7A01G447400 chr5B 100.000 36 0 0 1477 1512 627485485 627485520 3.250000e-07 67.6
31 TraesCS7A01G447400 chr5B 97.368 38 1 0 1412 1449 23257972 23258009 1.170000e-06 65.8
32 TraesCS7A01G447400 chr5B 97.368 38 1 0 1412 1449 675602158 675602121 1.170000e-06 65.8
33 TraesCS7A01G447400 chr5B 76.667 120 14 10 1513 1618 623881194 623881313 3.000000e-03 54.7
34 TraesCS7A01G447400 chr5B 76.667 120 14 10 1513 1618 627485473 627485592 3.000000e-03 54.7
35 TraesCS7A01G447400 chr1B 97.005 2738 74 1 1564 4301 570769565 570766836 0.000000e+00 4595.0
36 TraesCS7A01G447400 chr1B 90.068 886 41 15 544 1405 570770430 570769568 0.000000e+00 1105.0
37 TraesCS7A01G447400 chr1B 95.953 593 24 0 4321 4913 570766784 570766192 0.000000e+00 963.0
38 TraesCS7A01G447400 chr5A 96.180 2749 78 9 1564 4298 437838672 437841407 0.000000e+00 4470.0
39 TraesCS7A01G447400 chr5A 89.376 866 62 11 544 1405 437837830 437838669 0.000000e+00 1062.0
40 TraesCS7A01G447400 chr5A 89.256 605 24 4 4323 4913 437841464 437842041 0.000000e+00 719.0
41 TraesCS7A01G447400 chr5A 94.410 161 7 1 1 159 572017004 572017164 3.890000e-61 246.0
42 TraesCS7A01G447400 chr2D 96.068 2467 88 2 1564 4022 261785958 261783493 0.000000e+00 4010.0
43 TraesCS7A01G447400 chr2D 88.548 847 63 17 545 1388 261786785 261785970 0.000000e+00 996.0
44 TraesCS7A01G447400 chr2D 85.897 390 36 13 169 547 606590144 606589763 1.020000e-106 398.0
45 TraesCS7A01G447400 chr2D 99.010 101 1 0 4913 5013 96787973 96788073 1.110000e-41 182.0
46 TraesCS7A01G447400 chr6A 99.904 2074 2 0 2840 4913 189534830 189536903 0.000000e+00 3819.0
47 TraesCS7A01G447400 chr6A 98.669 1277 3 2 545 1818 189532298 189533563 0.000000e+00 2252.0
48 TraesCS7A01G447400 chr6A 100.000 36 0 0 1477 1512 189533150 189533185 3.250000e-07 67.6
49 TraesCS7A01G447400 chr3A 90.379 1819 152 14 2464 4265 703415261 703413449 0.000000e+00 2368.0
50 TraesCS7A01G447400 chr4A 94.069 1096 41 4 1564 2637 667659188 667658095 0.000000e+00 1642.0
51 TraesCS7A01G447400 chr4A 90.460 870 50 9 545 1405 667660036 667659191 0.000000e+00 1116.0
52 TraesCS7A01G447400 chr4A 96.627 593 20 0 4321 4913 667651196 667650604 0.000000e+00 985.0
53 TraesCS7A01G447400 chr4A 93.488 215 5 2 4087 4301 667651453 667651248 1.360000e-80 311.0
54 TraesCS7A01G447400 chr4A 99.010 101 1 0 4913 5013 616795340 616795240 1.110000e-41 182.0
55 TraesCS7A01G447400 chr1D 91.176 850 55 10 560 1405 117407353 117408186 0.000000e+00 1136.0
56 TraesCS7A01G447400 chr1D 95.461 683 23 1 1564 2238 117408189 117408871 0.000000e+00 1083.0
57 TraesCS7A01G447400 chr1D 82.821 390 51 16 170 550 9235851 9235469 8.080000e-88 335.0
58 TraesCS7A01G447400 chr1D 93.525 139 5 3 23 159 38261532 38261396 2.380000e-48 204.0
59 TraesCS7A01G447400 chr1D 97.368 38 1 0 1412 1449 117408215 117408252 1.170000e-06 65.8
60 TraesCS7A01G447400 chr7B 85.389 1054 90 34 3905 4913 237468363 237469397 0.000000e+00 1035.0
61 TraesCS7A01G447400 chr7D 88.235 306 29 6 247 547 613099967 613100270 4.790000e-95 359.0
62 TraesCS7A01G447400 chr7D 91.701 241 18 2 308 547 613059339 613059578 2.900000e-87 333.0
63 TraesCS7A01G447400 chr7D 76.744 559 71 41 20 543 467426728 467426194 1.800000e-64 257.0
64 TraesCS7A01G447400 chr7D 76.367 567 69 44 20 540 208677248 208677795 1.400000e-60 244.0
65 TraesCS7A01G447400 chr7D 99.010 101 1 0 4913 5013 84414021 84414121 1.110000e-41 182.0
66 TraesCS7A01G447400 chr2A 81.746 378 45 19 190 550 156753343 156752973 1.370000e-75 294.0
67 TraesCS7A01G447400 chr2A 100.000 100 0 0 4913 5012 156758274 156758175 8.610000e-43 185.0
68 TraesCS7A01G447400 chr2A 100.000 100 0 0 4913 5012 769006018 769006117 8.610000e-43 185.0
69 TraesCS7A01G447400 chr4D 81.024 332 32 22 20 333 10922327 10922009 8.430000e-58 235.0
70 TraesCS7A01G447400 chr5D 75.936 561 70 44 20 543 275557417 275557949 1.410000e-55 228.0
71 TraesCS7A01G447400 chr5D 75.779 578 58 52 26 543 29594878 29594323 3.050000e-52 217.0
72 TraesCS7A01G447400 chr6B 93.077 130 8 1 1 130 594818625 594818497 6.650000e-44 189.0
73 TraesCS7A01G447400 chr6D 99.010 101 1 0 4913 5013 86649801 86649901 1.110000e-41 182.0
74 TraesCS7A01G447400 chr6D 98.077 104 2 0 4913 5016 121166663 121166766 1.110000e-41 182.0
75 TraesCS7A01G447400 chr2B 100.000 33 0 0 127 159 803108 803140 1.510000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G447400 chr7A 642148213 642153246 5033 False 4682.300000 9297 100.000000 1 5034 2 chr7A.!!$F4 5033
1 TraesCS7A01G447400 chr7A 641462751 641463338 587 True 564.000000 564 85.135000 1 550 1 chr7A.!!$R5 549
2 TraesCS7A01G447400 chr3B 434342034 434346406 4372 True 4033.800000 8000 99.851500 544 4913 2 chr3B.!!$R1 4369
3 TraesCS7A01G447400 chr3B 306886720 306889159 2439 False 3626.000000 3626 93.412000 1682 4140 1 chr3B.!!$F1 2458
4 TraesCS7A01G447400 chr3B 512098757 512103015 4258 True 2152.666667 4514 92.817333 545 4913 3 chr3B.!!$R2 4368
5 TraesCS7A01G447400 chr5B 675598804 675603030 4226 True 1774.950000 4750 96.343250 542 4913 4 chr5B.!!$R1 4371
6 TraesCS7A01G447400 chr5B 23257056 23261330 4274 False 1634.700000 4488 94.103750 545 4913 4 chr5B.!!$F1 4368
7 TraesCS7A01G447400 chr5B 623880353 623882426 2073 False 705.140000 1910 89.682400 544 4913 5 chr5B.!!$F2 4369
8 TraesCS7A01G447400 chr5B 627484638 627486705 2067 False 700.740000 1882 89.636600 544 4913 5 chr5B.!!$F3 4369
9 TraesCS7A01G447400 chr1B 570766192 570770430 4238 True 2221.000000 4595 94.342000 544 4913 3 chr1B.!!$R1 4369
10 TraesCS7A01G447400 chr5A 437837830 437842041 4211 False 2083.666667 4470 91.604000 544 4913 3 chr5A.!!$F2 4369
11 TraesCS7A01G447400 chr2D 261783493 261786785 3292 True 2503.000000 4010 92.308000 545 4022 2 chr2D.!!$R2 3477
12 TraesCS7A01G447400 chr6A 189532298 189536903 4605 False 2046.200000 3819 99.524333 545 4913 3 chr6A.!!$F1 4368
13 TraesCS7A01G447400 chr3A 703413449 703415261 1812 True 2368.000000 2368 90.379000 2464 4265 1 chr3A.!!$R1 1801
14 TraesCS7A01G447400 chr4A 667658095 667660036 1941 True 1379.000000 1642 92.264500 545 2637 2 chr4A.!!$R3 2092
15 TraesCS7A01G447400 chr4A 667650604 667651453 849 True 648.000000 985 95.057500 4087 4913 2 chr4A.!!$R2 826
16 TraesCS7A01G447400 chr1D 117407353 117408871 1518 False 761.600000 1136 94.668333 560 2238 3 chr1D.!!$F1 1678
17 TraesCS7A01G447400 chr7B 237468363 237469397 1034 False 1035.000000 1035 85.389000 3905 4913 1 chr7B.!!$F1 1008
18 TraesCS7A01G447400 chr7D 467426194 467426728 534 True 257.000000 257 76.744000 20 543 1 chr7D.!!$R1 523
19 TraesCS7A01G447400 chr7D 208677248 208677795 547 False 244.000000 244 76.367000 20 540 1 chr7D.!!$F2 520
20 TraesCS7A01G447400 chr5D 275557417 275557949 532 False 228.000000 228 75.936000 20 543 1 chr5D.!!$F1 523
21 TraesCS7A01G447400 chr5D 29594323 29594878 555 True 217.000000 217 75.779000 26 543 1 chr5D.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 184 0.036294 GGAGTGGAGGCGCTACTTTT 60.036 55.0 8.86 0.0 38.58 2.27 F
473 478 0.179001 ATTTAGGTGGGGTATGCGGC 60.179 55.0 0.00 0.0 0.00 6.53 F
520 525 1.141185 GCTAGCCCCCACCTCTTTAT 58.859 55.0 2.29 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1013 1112 3.121030 CAACTGCGGCTCCTTCGG 61.121 66.667 0.00 0.00 0.00 4.30 R
2838 3026 6.705825 GTGACAAGAAACCTTTATTTGCCAAT 59.294 34.615 0.00 0.00 0.00 3.16 R
4914 5565 3.087906 ACTATGGGTGACGGGCCC 61.088 66.667 13.57 13.57 46.26 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 113 1.899534 GCGGTACACTTTGCCCCAA 60.900 57.895 0.00 0.00 0.00 4.12
113 118 1.818674 GTACACTTTGCCCCAATCAGG 59.181 52.381 0.00 0.00 37.03 3.86
124 129 2.309136 CCAATCAGGGGTTGGTTCTT 57.691 50.000 0.01 0.00 40.94 2.52
125 130 2.171003 CCAATCAGGGGTTGGTTCTTC 58.829 52.381 0.01 0.00 40.94 2.87
126 131 1.812571 CAATCAGGGGTTGGTTCTTCG 59.187 52.381 0.00 0.00 0.00 3.79
127 132 1.064825 ATCAGGGGTTGGTTCTTCGT 58.935 50.000 0.00 0.00 0.00 3.85
128 133 0.395312 TCAGGGGTTGGTTCTTCGTC 59.605 55.000 0.00 0.00 0.00 4.20
129 134 0.605589 CAGGGGTTGGTTCTTCGTCC 60.606 60.000 0.00 0.00 0.00 4.79
130 135 1.303074 GGGGTTGGTTCTTCGTCCC 60.303 63.158 0.00 0.00 34.68 4.46
131 136 1.759236 GGGTTGGTTCTTCGTCCCT 59.241 57.895 0.00 0.00 32.89 4.20
132 137 0.605589 GGGTTGGTTCTTCGTCCCTG 60.606 60.000 0.00 0.00 32.89 4.45
133 138 1.235281 GGTTGGTTCTTCGTCCCTGC 61.235 60.000 0.00 0.00 0.00 4.85
134 139 0.534203 GTTGGTTCTTCGTCCCTGCA 60.534 55.000 0.00 0.00 0.00 4.41
135 140 0.534203 TTGGTTCTTCGTCCCTGCAC 60.534 55.000 0.00 0.00 0.00 4.57
136 141 1.671379 GGTTCTTCGTCCCTGCACC 60.671 63.158 0.00 0.00 0.00 5.01
137 142 1.371558 GTTCTTCGTCCCTGCACCT 59.628 57.895 0.00 0.00 0.00 4.00
138 143 0.670854 GTTCTTCGTCCCTGCACCTC 60.671 60.000 0.00 0.00 0.00 3.85
139 144 2.125912 CTTCGTCCCTGCACCTCG 60.126 66.667 0.00 0.00 0.00 4.63
140 145 3.649277 CTTCGTCCCTGCACCTCGG 62.649 68.421 0.00 0.00 0.00 4.63
143 148 4.021925 GTCCCTGCACCTCGGCTT 62.022 66.667 0.00 0.00 34.04 4.35
144 149 4.020617 TCCCTGCACCTCGGCTTG 62.021 66.667 0.00 0.00 34.04 4.01
150 155 3.197790 CACCTCGGCTTGCCGATG 61.198 66.667 32.45 30.24 41.47 3.84
156 161 4.465512 GGCTTGCCGATGCGTGTG 62.466 66.667 0.00 0.00 41.78 3.82
157 162 4.465512 GCTTGCCGATGCGTGTGG 62.466 66.667 0.00 0.00 41.78 4.17
158 163 3.803082 CTTGCCGATGCGTGTGGG 61.803 66.667 0.00 0.00 41.78 4.61
164 169 4.760047 GATGCGTGTGGGCGGAGT 62.760 66.667 0.00 0.00 35.34 3.85
168 173 4.742201 CGTGTGGGCGGAGTGGAG 62.742 72.222 0.00 0.00 0.00 3.86
169 174 4.394712 GTGTGGGCGGAGTGGAGG 62.395 72.222 0.00 0.00 0.00 4.30
175 180 4.874977 GCGGAGTGGAGGCGCTAC 62.875 72.222 7.64 0.00 0.00 3.58
176 181 3.141488 CGGAGTGGAGGCGCTACT 61.141 66.667 7.01 7.01 41.50 2.57
177 182 2.711922 CGGAGTGGAGGCGCTACTT 61.712 63.158 8.86 0.00 38.58 2.24
178 183 1.597461 GGAGTGGAGGCGCTACTTT 59.403 57.895 8.86 0.00 38.58 2.66
179 184 0.036294 GGAGTGGAGGCGCTACTTTT 60.036 55.000 8.86 0.00 38.58 2.27
180 185 1.610886 GGAGTGGAGGCGCTACTTTTT 60.611 52.381 8.86 0.00 38.58 1.94
181 186 1.732809 GAGTGGAGGCGCTACTTTTTC 59.267 52.381 8.86 0.00 38.58 2.29
182 187 0.803117 GTGGAGGCGCTACTTTTTCC 59.197 55.000 7.64 4.26 0.00 3.13
183 188 0.672401 TGGAGGCGCTACTTTTTCCG 60.672 55.000 7.64 0.00 0.00 4.30
184 189 0.672711 GGAGGCGCTACTTTTTCCGT 60.673 55.000 7.64 0.00 0.00 4.69
185 190 1.154197 GAGGCGCTACTTTTTCCGTT 58.846 50.000 7.64 0.00 0.00 4.44
186 191 0.872388 AGGCGCTACTTTTTCCGTTG 59.128 50.000 7.64 0.00 0.00 4.10
187 192 0.869730 GGCGCTACTTTTTCCGTTGA 59.130 50.000 7.64 0.00 0.00 3.18
188 193 1.136057 GGCGCTACTTTTTCCGTTGAG 60.136 52.381 7.64 0.00 0.00 3.02
189 194 1.136057 GCGCTACTTTTTCCGTTGAGG 60.136 52.381 0.00 0.00 42.97 3.86
202 207 3.440173 TCCGTTGAGGATTCATTCTTTGC 59.560 43.478 0.00 0.00 45.98 3.68
203 208 3.428045 CCGTTGAGGATTCATTCTTTGCC 60.428 47.826 0.00 0.00 45.00 4.52
204 209 3.428045 CGTTGAGGATTCATTCTTTGCCC 60.428 47.826 0.00 0.00 32.27 5.36
205 210 3.744940 TGAGGATTCATTCTTTGCCCT 57.255 42.857 0.00 0.00 0.00 5.19
206 211 4.051661 TGAGGATTCATTCTTTGCCCTT 57.948 40.909 0.00 0.00 0.00 3.95
207 212 4.019174 TGAGGATTCATTCTTTGCCCTTC 58.981 43.478 0.00 0.00 0.00 3.46
208 213 4.264083 TGAGGATTCATTCTTTGCCCTTCT 60.264 41.667 0.00 0.00 0.00 2.85
209 214 5.044919 TGAGGATTCATTCTTTGCCCTTCTA 60.045 40.000 0.00 0.00 0.00 2.10
210 215 5.444176 AGGATTCATTCTTTGCCCTTCTAG 58.556 41.667 0.00 0.00 0.00 2.43
211 216 4.582240 GGATTCATTCTTTGCCCTTCTAGG 59.418 45.833 0.00 0.00 34.30 3.02
223 228 3.087370 CCTTCTAGGGTTCTTTTGGGG 57.913 52.381 0.00 0.00 0.00 4.96
224 229 2.647802 CCTTCTAGGGTTCTTTTGGGGA 59.352 50.000 0.00 0.00 0.00 4.81
225 230 3.308473 CCTTCTAGGGTTCTTTTGGGGAG 60.308 52.174 0.00 0.00 0.00 4.30
226 231 2.275466 TCTAGGGTTCTTTTGGGGAGG 58.725 52.381 0.00 0.00 0.00 4.30
227 232 1.285078 CTAGGGTTCTTTTGGGGAGGG 59.715 57.143 0.00 0.00 0.00 4.30
228 233 0.404346 AGGGTTCTTTTGGGGAGGGA 60.404 55.000 0.00 0.00 0.00 4.20
229 234 0.710588 GGGTTCTTTTGGGGAGGGAT 59.289 55.000 0.00 0.00 0.00 3.85
230 235 1.342076 GGGTTCTTTTGGGGAGGGATC 60.342 57.143 0.00 0.00 0.00 3.36
231 236 1.641192 GGTTCTTTTGGGGAGGGATCT 59.359 52.381 0.00 0.00 0.00 2.75
232 237 2.043115 GGTTCTTTTGGGGAGGGATCTT 59.957 50.000 0.00 0.00 0.00 2.40
233 238 3.502303 GGTTCTTTTGGGGAGGGATCTTT 60.502 47.826 0.00 0.00 0.00 2.52
234 239 4.160329 GTTCTTTTGGGGAGGGATCTTTT 58.840 43.478 0.00 0.00 0.00 2.27
235 240 4.485653 TCTTTTGGGGAGGGATCTTTTT 57.514 40.909 0.00 0.00 0.00 1.94
259 264 9.730420 TTTTCTTTCTCTGTTTATACTTTGCAC 57.270 29.630 0.00 0.00 0.00 4.57
260 265 7.435068 TCTTTCTCTGTTTATACTTTGCACC 57.565 36.000 0.00 0.00 0.00 5.01
261 266 6.995686 TCTTTCTCTGTTTATACTTTGCACCA 59.004 34.615 0.00 0.00 0.00 4.17
262 267 7.500892 TCTTTCTCTGTTTATACTTTGCACCAA 59.499 33.333 0.00 0.00 0.00 3.67
263 268 7.575414 TTCTCTGTTTATACTTTGCACCAAA 57.425 32.000 0.00 0.00 0.00 3.28
264 269 7.575414 TCTCTGTTTATACTTTGCACCAAAA 57.425 32.000 0.00 0.00 32.75 2.44
265 270 8.001881 TCTCTGTTTATACTTTGCACCAAAAA 57.998 30.769 0.00 0.00 32.75 1.94
266 271 8.637986 TCTCTGTTTATACTTTGCACCAAAAAT 58.362 29.630 0.00 0.00 32.75 1.82
267 272 8.810652 TCTGTTTATACTTTGCACCAAAAATC 57.189 30.769 0.00 0.00 32.75 2.17
268 273 8.417106 TCTGTTTATACTTTGCACCAAAAATCA 58.583 29.630 0.00 0.00 32.75 2.57
269 274 9.206870 CTGTTTATACTTTGCACCAAAAATCAT 57.793 29.630 0.00 0.00 32.75 2.45
272 277 8.925161 TTATACTTTGCACCAAAAATCATAGC 57.075 30.769 0.00 0.00 32.75 2.97
273 278 4.568956 ACTTTGCACCAAAAATCATAGCC 58.431 39.130 0.00 0.00 32.75 3.93
274 279 4.284234 ACTTTGCACCAAAAATCATAGCCT 59.716 37.500 0.00 0.00 32.75 4.58
275 280 5.480073 ACTTTGCACCAAAAATCATAGCCTA 59.520 36.000 0.00 0.00 32.75 3.93
276 281 5.581126 TTGCACCAAAAATCATAGCCTAG 57.419 39.130 0.00 0.00 0.00 3.02
277 282 3.381272 TGCACCAAAAATCATAGCCTAGC 59.619 43.478 0.00 0.00 0.00 3.42
278 283 3.381272 GCACCAAAAATCATAGCCTAGCA 59.619 43.478 0.00 0.00 0.00 3.49
279 284 4.038402 GCACCAAAAATCATAGCCTAGCAT 59.962 41.667 0.00 0.00 0.00 3.79
280 285 5.526115 CACCAAAAATCATAGCCTAGCATG 58.474 41.667 0.00 0.00 0.00 4.06
281 286 4.586001 ACCAAAAATCATAGCCTAGCATGG 59.414 41.667 0.00 0.00 0.00 3.66
289 294 3.239861 GCCTAGCATGGCCTGATAC 57.760 57.895 3.32 0.00 46.82 2.24
290 295 0.322008 GCCTAGCATGGCCTGATACC 60.322 60.000 3.32 0.00 46.82 2.73
291 296 1.059098 CCTAGCATGGCCTGATACCA 58.941 55.000 3.32 0.00 42.61 3.25
293 298 2.040813 CCTAGCATGGCCTGATACCATT 59.959 50.000 3.32 0.00 45.86 3.16
294 299 1.991121 AGCATGGCCTGATACCATTG 58.009 50.000 3.32 0.00 45.86 2.82
295 300 1.496001 AGCATGGCCTGATACCATTGA 59.504 47.619 3.32 0.00 45.86 2.57
296 301 2.109480 AGCATGGCCTGATACCATTGAT 59.891 45.455 3.32 0.00 45.86 2.57
297 302 3.331591 AGCATGGCCTGATACCATTGATA 59.668 43.478 3.32 0.00 45.86 2.15
298 303 3.693085 GCATGGCCTGATACCATTGATAG 59.307 47.826 3.32 0.00 45.86 2.08
299 304 4.566278 GCATGGCCTGATACCATTGATAGA 60.566 45.833 3.32 0.00 45.86 1.98
300 305 5.563592 CATGGCCTGATACCATTGATAGAA 58.436 41.667 3.32 0.00 45.86 2.10
301 306 4.973168 TGGCCTGATACCATTGATAGAAC 58.027 43.478 3.32 0.00 30.29 3.01
302 307 4.202461 TGGCCTGATACCATTGATAGAACC 60.202 45.833 3.32 0.00 30.29 3.62
303 308 4.042187 GGCCTGATACCATTGATAGAACCT 59.958 45.833 0.00 0.00 0.00 3.50
304 309 5.241662 GCCTGATACCATTGATAGAACCTC 58.758 45.833 0.00 0.00 0.00 3.85
305 310 5.012561 GCCTGATACCATTGATAGAACCTCT 59.987 44.000 0.00 0.00 0.00 3.69
306 311 6.211584 GCCTGATACCATTGATAGAACCTCTA 59.788 42.308 0.00 0.00 32.87 2.43
307 312 7.578571 GCCTGATACCATTGATAGAACCTCTAG 60.579 44.444 0.00 0.00 31.67 2.43
308 313 7.671819 CCTGATACCATTGATAGAACCTCTAGA 59.328 40.741 0.00 0.00 31.67 2.43
309 314 9.253832 CTGATACCATTGATAGAACCTCTAGAT 57.746 37.037 0.00 0.00 31.67 1.98
310 315 9.249053 TGATACCATTGATAGAACCTCTAGATC 57.751 37.037 0.00 0.00 31.67 2.75
311 316 6.582677 ACCATTGATAGAACCTCTAGATCG 57.417 41.667 0.00 0.00 31.67 3.69
312 317 5.478679 ACCATTGATAGAACCTCTAGATCGG 59.521 44.000 0.00 0.00 31.67 4.18
313 318 5.478679 CCATTGATAGAACCTCTAGATCGGT 59.521 44.000 0.00 0.00 31.67 4.69
314 319 6.015010 CCATTGATAGAACCTCTAGATCGGTT 60.015 42.308 14.58 14.58 45.71 4.44
315 320 7.176865 CCATTGATAGAACCTCTAGATCGGTTA 59.823 40.741 14.63 3.32 43.23 2.85
316 321 7.747155 TTGATAGAACCTCTAGATCGGTTAG 57.253 40.000 14.63 0.00 43.23 2.34
317 322 6.239396 TGATAGAACCTCTAGATCGGTTAGG 58.761 44.000 14.63 3.73 43.23 2.69
318 323 3.224269 AGAACCTCTAGATCGGTTAGGC 58.776 50.000 14.63 5.11 43.23 3.93
319 324 3.117436 AGAACCTCTAGATCGGTTAGGCT 60.117 47.826 14.63 6.97 43.23 4.58
320 325 4.104420 AGAACCTCTAGATCGGTTAGGCTA 59.896 45.833 14.63 0.00 43.23 3.93
321 326 4.023726 ACCTCTAGATCGGTTAGGCTAG 57.976 50.000 0.00 0.00 33.37 3.42
322 327 3.651904 ACCTCTAGATCGGTTAGGCTAGA 59.348 47.826 0.00 0.00 37.57 2.43
323 328 4.290196 ACCTCTAGATCGGTTAGGCTAGAT 59.710 45.833 0.00 0.00 38.76 1.98
324 329 5.488203 ACCTCTAGATCGGTTAGGCTAGATA 59.512 44.000 0.00 0.00 38.76 1.98
325 330 6.159046 ACCTCTAGATCGGTTAGGCTAGATAT 59.841 42.308 0.00 0.00 38.76 1.63
326 331 7.057894 CCTCTAGATCGGTTAGGCTAGATATT 58.942 42.308 0.00 0.00 38.76 1.28
327 332 7.227910 CCTCTAGATCGGTTAGGCTAGATATTC 59.772 44.444 0.00 0.00 38.76 1.75
328 333 7.055378 TCTAGATCGGTTAGGCTAGATATTCC 58.945 42.308 0.00 0.00 35.64 3.01
329 334 4.641094 AGATCGGTTAGGCTAGATATTCCG 59.359 45.833 0.00 1.78 38.36 4.30
330 335 3.087031 TCGGTTAGGCTAGATATTCCGG 58.913 50.000 0.00 0.00 37.72 5.14
331 336 2.824341 CGGTTAGGCTAGATATTCCGGT 59.176 50.000 0.00 0.00 34.24 5.28
332 337 3.367087 CGGTTAGGCTAGATATTCCGGTG 60.367 52.174 0.00 0.00 34.24 4.94
333 338 3.056035 GGTTAGGCTAGATATTCCGGTGG 60.056 52.174 0.00 0.00 0.00 4.61
334 339 2.400467 AGGCTAGATATTCCGGTGGT 57.600 50.000 0.00 0.00 0.00 4.16
335 340 2.690840 AGGCTAGATATTCCGGTGGTT 58.309 47.619 0.00 0.00 0.00 3.67
336 341 2.633481 AGGCTAGATATTCCGGTGGTTC 59.367 50.000 0.00 0.00 0.00 3.62
337 342 2.633481 GGCTAGATATTCCGGTGGTTCT 59.367 50.000 0.00 3.16 0.00 3.01
338 343 3.306156 GGCTAGATATTCCGGTGGTTCTC 60.306 52.174 0.00 0.00 0.00 2.87
339 344 3.321111 GCTAGATATTCCGGTGGTTCTCA 59.679 47.826 0.00 0.00 0.00 3.27
340 345 3.821421 AGATATTCCGGTGGTTCTCAC 57.179 47.619 0.00 0.00 45.34 3.51
349 354 2.262423 GTGGTTCTCACCTTCTGCTT 57.738 50.000 0.00 0.00 44.61 3.91
350 355 1.876156 GTGGTTCTCACCTTCTGCTTG 59.124 52.381 0.00 0.00 44.61 4.01
351 356 1.490490 TGGTTCTCACCTTCTGCTTGT 59.510 47.619 0.00 0.00 44.61 3.16
352 357 1.876156 GGTTCTCACCTTCTGCTTGTG 59.124 52.381 0.00 0.00 40.44 3.33
353 358 1.876156 GTTCTCACCTTCTGCTTGTGG 59.124 52.381 0.00 0.00 0.00 4.17
354 359 0.250467 TCTCACCTTCTGCTTGTGGC 60.250 55.000 0.00 0.00 42.22 5.01
355 360 0.250640 CTCACCTTCTGCTTGTGGCT 60.251 55.000 0.00 0.00 42.39 4.75
356 361 0.250467 TCACCTTCTGCTTGTGGCTC 60.250 55.000 0.00 0.00 42.39 4.70
357 362 1.302033 ACCTTCTGCTTGTGGCTCG 60.302 57.895 0.00 0.00 42.39 5.03
358 363 1.004560 CCTTCTGCTTGTGGCTCGA 60.005 57.895 0.00 0.00 42.39 4.04
359 364 1.018226 CCTTCTGCTTGTGGCTCGAG 61.018 60.000 8.45 8.45 42.39 4.04
360 365 1.004560 TTCTGCTTGTGGCTCGAGG 60.005 57.895 15.58 0.00 42.39 4.63
361 366 1.471829 TTCTGCTTGTGGCTCGAGGA 61.472 55.000 15.58 2.10 42.39 3.71
362 367 1.447489 CTGCTTGTGGCTCGAGGAG 60.447 63.158 15.58 10.37 42.39 3.69
372 377 1.153667 CTCGAGGAGCTTCTGGTGC 60.154 63.158 0.00 0.00 0.00 5.01
373 378 2.125350 CGAGGAGCTTCTGGTGCC 60.125 66.667 0.00 0.00 32.28 5.01
374 379 2.125350 GAGGAGCTTCTGGTGCCG 60.125 66.667 0.00 0.00 32.28 5.69
375 380 3.672295 GAGGAGCTTCTGGTGCCGG 62.672 68.421 0.00 0.00 32.28 6.13
380 385 3.136123 CTTCTGGTGCCGGCCATG 61.136 66.667 26.77 11.77 37.96 3.66
381 386 4.738998 TTCTGGTGCCGGCCATGG 62.739 66.667 26.77 7.63 37.96 3.66
403 408 2.893398 GGTGACGGCAGGGAGTAG 59.107 66.667 0.00 0.00 0.00 2.57
404 409 1.982938 GGTGACGGCAGGGAGTAGT 60.983 63.158 0.00 0.00 0.00 2.73
405 410 1.215647 GTGACGGCAGGGAGTAGTG 59.784 63.158 0.00 0.00 0.00 2.74
406 411 1.982395 TGACGGCAGGGAGTAGTGG 60.982 63.158 0.00 0.00 0.00 4.00
407 412 1.982938 GACGGCAGGGAGTAGTGGT 60.983 63.158 0.00 0.00 0.00 4.16
408 413 2.227089 GACGGCAGGGAGTAGTGGTG 62.227 65.000 0.00 0.00 0.00 4.17
409 414 2.990479 GGCAGGGAGTAGTGGTGG 59.010 66.667 0.00 0.00 0.00 4.61
410 415 2.269241 GCAGGGAGTAGTGGTGGC 59.731 66.667 0.00 0.00 0.00 5.01
411 416 2.579201 CAGGGAGTAGTGGTGGCG 59.421 66.667 0.00 0.00 0.00 5.69
412 417 2.683933 AGGGAGTAGTGGTGGCGG 60.684 66.667 0.00 0.00 0.00 6.13
413 418 3.001406 GGGAGTAGTGGTGGCGGT 61.001 66.667 0.00 0.00 0.00 5.68
414 419 2.264794 GGAGTAGTGGTGGCGGTG 59.735 66.667 0.00 0.00 0.00 4.94
415 420 2.434359 GAGTAGTGGTGGCGGTGC 60.434 66.667 0.00 0.00 0.00 5.01
416 421 2.923035 AGTAGTGGTGGCGGTGCT 60.923 61.111 0.00 0.00 0.00 4.40
417 422 2.032071 GTAGTGGTGGCGGTGCTT 59.968 61.111 0.00 0.00 0.00 3.91
418 423 2.033194 GTAGTGGTGGCGGTGCTTC 61.033 63.158 0.00 0.00 0.00 3.86
419 424 3.248446 TAGTGGTGGCGGTGCTTCC 62.248 63.158 0.00 0.00 0.00 3.46
420 425 4.643387 GTGGTGGCGGTGCTTCCT 62.643 66.667 0.00 0.00 0.00 3.36
421 426 2.925706 TGGTGGCGGTGCTTCCTA 60.926 61.111 0.00 0.00 0.00 2.94
422 427 2.297895 TGGTGGCGGTGCTTCCTAT 61.298 57.895 0.00 0.00 0.00 2.57
423 428 1.523938 GGTGGCGGTGCTTCCTATC 60.524 63.158 0.00 0.00 0.00 2.08
424 429 1.220749 GTGGCGGTGCTTCCTATCA 59.779 57.895 0.00 0.00 0.00 2.15
425 430 0.811616 GTGGCGGTGCTTCCTATCAG 60.812 60.000 0.00 0.00 0.00 2.90
426 431 1.889573 GGCGGTGCTTCCTATCAGC 60.890 63.158 0.00 0.00 37.82 4.26
427 432 1.153369 GCGGTGCTTCCTATCAGCA 60.153 57.895 0.00 0.00 45.21 4.41
431 436 3.465990 TGCTTCCTATCAGCACTGC 57.534 52.632 0.00 0.00 42.49 4.40
432 437 0.614812 TGCTTCCTATCAGCACTGCA 59.385 50.000 3.30 0.00 42.49 4.41
433 438 1.012841 GCTTCCTATCAGCACTGCAC 58.987 55.000 3.30 0.00 37.22 4.57
434 439 1.406614 GCTTCCTATCAGCACTGCACT 60.407 52.381 3.30 0.00 37.22 4.40
435 440 2.159043 GCTTCCTATCAGCACTGCACTA 60.159 50.000 3.30 0.00 37.22 2.74
436 441 3.679917 GCTTCCTATCAGCACTGCACTAA 60.680 47.826 3.30 0.00 37.22 2.24
437 442 3.526931 TCCTATCAGCACTGCACTAAC 57.473 47.619 3.30 0.00 0.00 2.34
438 443 2.168521 TCCTATCAGCACTGCACTAACC 59.831 50.000 3.30 0.00 0.00 2.85
439 444 2.555199 CTATCAGCACTGCACTAACCC 58.445 52.381 3.30 0.00 0.00 4.11
440 445 0.987294 ATCAGCACTGCACTAACCCT 59.013 50.000 3.30 0.00 0.00 4.34
441 446 1.639722 TCAGCACTGCACTAACCCTA 58.360 50.000 3.30 0.00 0.00 3.53
442 447 1.550524 TCAGCACTGCACTAACCCTAG 59.449 52.381 3.30 0.00 0.00 3.02
443 448 1.550524 CAGCACTGCACTAACCCTAGA 59.449 52.381 3.30 0.00 0.00 2.43
444 449 2.169352 CAGCACTGCACTAACCCTAGAT 59.831 50.000 3.30 0.00 0.00 1.98
445 450 2.432510 AGCACTGCACTAACCCTAGATC 59.567 50.000 3.30 0.00 0.00 2.75
446 451 2.799917 GCACTGCACTAACCCTAGATCG 60.800 54.545 0.00 0.00 0.00 3.69
447 452 2.032620 ACTGCACTAACCCTAGATCGG 58.967 52.381 0.00 0.00 0.00 4.18
448 453 2.032620 CTGCACTAACCCTAGATCGGT 58.967 52.381 0.00 0.00 34.07 4.69
449 454 3.220110 CTGCACTAACCCTAGATCGGTA 58.780 50.000 0.00 0.00 31.69 4.02
450 455 3.220110 TGCACTAACCCTAGATCGGTAG 58.780 50.000 0.00 0.00 31.69 3.18
451 456 2.557490 GCACTAACCCTAGATCGGTAGG 59.443 54.545 1.73 1.73 39.62 3.18
460 465 4.024670 CCTAGATCGGTAGGGGATTTAGG 58.975 52.174 4.59 4.59 40.35 2.69
461 466 3.632420 AGATCGGTAGGGGATTTAGGT 57.368 47.619 0.00 0.00 0.00 3.08
462 467 3.240302 AGATCGGTAGGGGATTTAGGTG 58.760 50.000 0.00 0.00 0.00 4.00
463 468 1.797320 TCGGTAGGGGATTTAGGTGG 58.203 55.000 0.00 0.00 0.00 4.61
464 469 0.763035 CGGTAGGGGATTTAGGTGGG 59.237 60.000 0.00 0.00 0.00 4.61
465 470 1.146452 GGTAGGGGATTTAGGTGGGG 58.854 60.000 0.00 0.00 0.00 4.96
466 471 1.630035 GGTAGGGGATTTAGGTGGGGT 60.630 57.143 0.00 0.00 0.00 4.95
467 472 2.361722 GGTAGGGGATTTAGGTGGGGTA 60.362 54.545 0.00 0.00 0.00 3.69
468 473 2.931481 AGGGGATTTAGGTGGGGTAT 57.069 50.000 0.00 0.00 0.00 2.73
469 474 2.428901 AGGGGATTTAGGTGGGGTATG 58.571 52.381 0.00 0.00 0.00 2.39
470 475 1.203013 GGGGATTTAGGTGGGGTATGC 60.203 57.143 0.00 0.00 0.00 3.14
471 476 1.544759 GGGATTTAGGTGGGGTATGCG 60.545 57.143 0.00 0.00 0.00 4.73
472 477 1.544759 GGATTTAGGTGGGGTATGCGG 60.545 57.143 0.00 0.00 0.00 5.69
473 478 0.179001 ATTTAGGTGGGGTATGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
474 479 2.596553 TTTAGGTGGGGTATGCGGCG 62.597 60.000 0.51 0.51 0.00 6.46
476 481 4.789123 GGTGGGGTATGCGGCGTT 62.789 66.667 9.37 0.00 0.00 4.84
477 482 3.505184 GTGGGGTATGCGGCGTTG 61.505 66.667 9.37 0.00 0.00 4.10
478 483 4.023234 TGGGGTATGCGGCGTTGT 62.023 61.111 9.37 0.00 0.00 3.32
479 484 3.505184 GGGGTATGCGGCGTTGTG 61.505 66.667 9.37 0.00 0.00 3.33
480 485 2.435234 GGGTATGCGGCGTTGTGA 60.435 61.111 9.37 0.00 0.00 3.58
481 486 2.746803 GGGTATGCGGCGTTGTGAC 61.747 63.158 9.37 0.00 0.00 3.67
517 522 3.083997 CGCTAGCCCCCACCTCTT 61.084 66.667 9.66 0.00 0.00 2.85
518 523 2.670148 CGCTAGCCCCCACCTCTTT 61.670 63.158 9.66 0.00 0.00 2.52
519 524 1.335132 CGCTAGCCCCCACCTCTTTA 61.335 60.000 9.66 0.00 0.00 1.85
520 525 1.141185 GCTAGCCCCCACCTCTTTAT 58.859 55.000 2.29 0.00 0.00 1.40
521 526 2.335933 GCTAGCCCCCACCTCTTTATA 58.664 52.381 2.29 0.00 0.00 0.98
522 527 2.913617 GCTAGCCCCCACCTCTTTATAT 59.086 50.000 2.29 0.00 0.00 0.86
523 528 4.101856 GCTAGCCCCCACCTCTTTATATA 58.898 47.826 2.29 0.00 0.00 0.86
524 529 4.162509 GCTAGCCCCCACCTCTTTATATAG 59.837 50.000 2.29 0.00 0.00 1.31
525 530 4.229718 AGCCCCCACCTCTTTATATAGT 57.770 45.455 0.00 0.00 0.00 2.12
526 531 3.910627 AGCCCCCACCTCTTTATATAGTG 59.089 47.826 0.00 0.00 0.00 2.74
527 532 3.559384 GCCCCCACCTCTTTATATAGTGC 60.559 52.174 0.00 0.00 0.00 4.40
528 533 3.650942 CCCCCACCTCTTTATATAGTGCA 59.349 47.826 0.00 0.00 0.00 4.57
529 534 4.263068 CCCCCACCTCTTTATATAGTGCAG 60.263 50.000 0.00 0.00 0.00 4.41
530 535 4.263068 CCCCACCTCTTTATATAGTGCAGG 60.263 50.000 0.00 0.00 0.00 4.85
531 536 4.348168 CCCACCTCTTTATATAGTGCAGGT 59.652 45.833 0.00 0.00 32.81 4.00
532 537 5.300752 CCACCTCTTTATATAGTGCAGGTG 58.699 45.833 16.37 16.37 46.11 4.00
534 539 6.163135 ACCTCTTTATATAGTGCAGGTGAC 57.837 41.667 0.00 0.00 31.37 3.67
535 540 5.661312 ACCTCTTTATATAGTGCAGGTGACA 59.339 40.000 0.00 0.00 31.37 3.58
536 541 6.183360 ACCTCTTTATATAGTGCAGGTGACAG 60.183 42.308 0.00 0.00 31.37 3.51
537 542 6.161855 TCTTTATATAGTGCAGGTGACAGG 57.838 41.667 0.00 0.00 0.00 4.00
538 543 4.955811 TTATATAGTGCAGGTGACAGGG 57.044 45.455 0.00 0.00 0.00 4.45
539 544 1.496060 TATAGTGCAGGTGACAGGGG 58.504 55.000 0.00 0.00 0.00 4.79
540 545 1.915078 ATAGTGCAGGTGACAGGGGC 61.915 60.000 0.00 0.00 0.00 5.80
663 668 6.053005 ACGGTTCTTATTTTCAGACTGTTCA 58.947 36.000 1.59 0.00 0.00 3.18
2838 3026 6.992123 TCAAGAAGTGTGCTGAATTAGAGAAA 59.008 34.615 0.00 0.00 0.00 2.52
4942 5593 3.813596 CCATAGTGGGTTGAGCGC 58.186 61.111 0.00 0.00 32.67 5.92
4943 5594 1.819632 CCATAGTGGGTTGAGCGCC 60.820 63.158 2.29 0.00 32.67 6.53
4944 5595 1.819632 CATAGTGGGTTGAGCGCCC 60.820 63.158 2.29 0.00 46.26 6.13
4945 5596 3.043999 ATAGTGGGTTGAGCGCCCC 62.044 63.158 12.14 12.14 45.49 5.80
4963 5614 3.983494 CGATCAGGGCGCGGATCT 61.983 66.667 30.69 9.16 38.18 2.75
4964 5615 2.626780 CGATCAGGGCGCGGATCTA 61.627 63.158 30.69 2.82 38.18 1.98
4965 5616 1.666011 GATCAGGGCGCGGATCTAA 59.334 57.895 28.34 0.00 37.52 2.10
4966 5617 0.389166 GATCAGGGCGCGGATCTAAG 60.389 60.000 28.34 1.14 37.52 2.18
4967 5618 1.821061 ATCAGGGCGCGGATCTAAGG 61.821 60.000 8.83 0.00 0.00 2.69
4968 5619 3.234730 AGGGCGCGGATCTAAGGG 61.235 66.667 8.83 0.00 0.00 3.95
4969 5620 4.990553 GGGCGCGGATCTAAGGGC 62.991 72.222 8.83 13.72 44.19 5.19
4971 5622 4.990553 GCGCGGATCTAAGGGCCC 62.991 72.222 16.46 16.46 39.91 5.80
4972 5623 4.664677 CGCGGATCTAAGGGCCCG 62.665 72.222 18.44 1.51 44.34 6.13
4973 5624 4.315941 GCGGATCTAAGGGCCCGG 62.316 72.222 18.44 11.27 42.02 5.73
4974 5625 2.842936 CGGATCTAAGGGCCCGGT 60.843 66.667 18.44 11.65 38.42 5.28
4975 5626 2.829592 GGATCTAAGGGCCCGGTG 59.170 66.667 18.44 10.51 0.00 4.94
4976 5627 2.819284 GGATCTAAGGGCCCGGTGG 61.819 68.421 18.44 11.09 0.00 4.61
5020 5671 6.517605 GGAGATCATCCTAACAAGTACTTCC 58.482 44.000 4.77 0.00 45.64 3.46
5021 5672 6.463190 GGAGATCATCCTAACAAGTACTTCCC 60.463 46.154 4.77 0.00 45.64 3.97
5022 5673 6.206042 AGATCATCCTAACAAGTACTTCCCT 58.794 40.000 4.77 0.00 0.00 4.20
5023 5674 5.934402 TCATCCTAACAAGTACTTCCCTC 57.066 43.478 4.77 0.00 0.00 4.30
5024 5675 5.590818 TCATCCTAACAAGTACTTCCCTCT 58.409 41.667 4.77 0.00 0.00 3.69
5025 5676 5.422331 TCATCCTAACAAGTACTTCCCTCTG 59.578 44.000 4.77 0.00 0.00 3.35
5026 5677 4.748701 TCCTAACAAGTACTTCCCTCTGT 58.251 43.478 4.77 0.00 0.00 3.41
5027 5678 4.527038 TCCTAACAAGTACTTCCCTCTGTG 59.473 45.833 4.77 0.00 0.00 3.66
5028 5679 2.841442 ACAAGTACTTCCCTCTGTGC 57.159 50.000 4.77 0.00 0.00 4.57
5029 5680 2.330216 ACAAGTACTTCCCTCTGTGCT 58.670 47.619 4.77 0.00 0.00 4.40
5030 5681 3.507411 ACAAGTACTTCCCTCTGTGCTA 58.493 45.455 4.77 0.00 0.00 3.49
5031 5682 4.097418 ACAAGTACTTCCCTCTGTGCTAT 58.903 43.478 4.77 0.00 0.00 2.97
5032 5683 5.269991 ACAAGTACTTCCCTCTGTGCTATA 58.730 41.667 4.77 0.00 0.00 1.31
5033 5684 5.127356 ACAAGTACTTCCCTCTGTGCTATAC 59.873 44.000 4.77 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 113 1.003233 GACGAAGAACCAACCCCTGAT 59.997 52.381 0.00 0.00 0.00 2.90
113 118 0.605589 CAGGGACGAAGAACCAACCC 60.606 60.000 0.00 0.00 37.79 4.11
114 119 1.235281 GCAGGGACGAAGAACCAACC 61.235 60.000 0.00 0.00 0.00 3.77
115 120 0.534203 TGCAGGGACGAAGAACCAAC 60.534 55.000 0.00 0.00 0.00 3.77
116 121 0.534203 GTGCAGGGACGAAGAACCAA 60.534 55.000 0.00 0.00 0.00 3.67
117 122 1.070786 GTGCAGGGACGAAGAACCA 59.929 57.895 0.00 0.00 0.00 3.67
118 123 1.671379 GGTGCAGGGACGAAGAACC 60.671 63.158 0.00 0.00 0.00 3.62
119 124 0.670854 GAGGTGCAGGGACGAAGAAC 60.671 60.000 0.00 0.00 0.00 3.01
120 125 1.671742 GAGGTGCAGGGACGAAGAA 59.328 57.895 0.00 0.00 0.00 2.52
121 126 2.636412 CGAGGTGCAGGGACGAAGA 61.636 63.158 0.00 0.00 0.00 2.87
122 127 2.125912 CGAGGTGCAGGGACGAAG 60.126 66.667 0.00 0.00 0.00 3.79
123 128 3.691342 CCGAGGTGCAGGGACGAA 61.691 66.667 0.00 0.00 0.00 3.85
126 131 4.021925 AAGCCGAGGTGCAGGGAC 62.022 66.667 0.00 0.00 0.00 4.46
127 132 4.020617 CAAGCCGAGGTGCAGGGA 62.021 66.667 0.00 0.00 0.00 4.20
139 144 4.465512 CACACGCATCGGCAAGCC 62.466 66.667 0.00 0.00 41.24 4.35
140 145 4.465512 CCACACGCATCGGCAAGC 62.466 66.667 0.00 0.00 41.24 4.01
141 146 3.803082 CCCACACGCATCGGCAAG 61.803 66.667 0.00 0.00 41.24 4.01
147 152 4.760047 ACTCCGCCCACACGCATC 62.760 66.667 0.00 0.00 0.00 3.91
151 156 4.742201 CTCCACTCCGCCCACACG 62.742 72.222 0.00 0.00 0.00 4.49
152 157 4.394712 CCTCCACTCCGCCCACAC 62.395 72.222 0.00 0.00 0.00 3.82
159 164 2.227089 AAAGTAGCGCCTCCACTCCG 62.227 60.000 2.29 0.00 0.00 4.63
160 165 0.036294 AAAAGTAGCGCCTCCACTCC 60.036 55.000 2.29 0.00 0.00 3.85
161 166 1.732809 GAAAAAGTAGCGCCTCCACTC 59.267 52.381 2.29 0.00 0.00 3.51
162 167 1.610886 GGAAAAAGTAGCGCCTCCACT 60.611 52.381 2.29 0.00 0.00 4.00
163 168 0.803117 GGAAAAAGTAGCGCCTCCAC 59.197 55.000 2.29 0.00 0.00 4.02
164 169 0.672401 CGGAAAAAGTAGCGCCTCCA 60.672 55.000 2.29 0.00 0.00 3.86
165 170 0.672711 ACGGAAAAAGTAGCGCCTCC 60.673 55.000 2.29 0.00 0.00 4.30
166 171 1.136057 CAACGGAAAAAGTAGCGCCTC 60.136 52.381 2.29 0.00 0.00 4.70
167 172 0.872388 CAACGGAAAAAGTAGCGCCT 59.128 50.000 2.29 0.00 0.00 5.52
168 173 0.869730 TCAACGGAAAAAGTAGCGCC 59.130 50.000 2.29 0.00 0.00 6.53
169 174 1.136057 CCTCAACGGAAAAAGTAGCGC 60.136 52.381 0.00 0.00 33.16 5.92
170 175 2.409975 TCCTCAACGGAAAAAGTAGCG 58.590 47.619 0.00 0.00 39.40 4.26
181 186 3.428045 GGCAAAGAATGAATCCTCAACGG 60.428 47.826 0.00 0.00 34.49 4.44
182 187 3.428045 GGGCAAAGAATGAATCCTCAACG 60.428 47.826 0.00 0.00 34.49 4.10
183 188 3.766051 AGGGCAAAGAATGAATCCTCAAC 59.234 43.478 0.00 0.00 34.49 3.18
184 189 4.051661 AGGGCAAAGAATGAATCCTCAA 57.948 40.909 0.00 0.00 34.49 3.02
185 190 3.744940 AGGGCAAAGAATGAATCCTCA 57.255 42.857 0.00 0.00 35.56 3.86
186 191 4.276642 AGAAGGGCAAAGAATGAATCCTC 58.723 43.478 0.00 0.00 0.00 3.71
187 192 4.328118 AGAAGGGCAAAGAATGAATCCT 57.672 40.909 0.00 0.00 0.00 3.24
188 193 4.582240 CCTAGAAGGGCAAAGAATGAATCC 59.418 45.833 0.00 0.00 0.00 3.01
189 194 5.764487 CCTAGAAGGGCAAAGAATGAATC 57.236 43.478 0.00 0.00 0.00 2.52
203 208 2.647802 TCCCCAAAAGAACCCTAGAAGG 59.352 50.000 0.00 0.00 34.30 3.46
204 209 3.308473 CCTCCCCAAAAGAACCCTAGAAG 60.308 52.174 0.00 0.00 0.00 2.85
205 210 2.647802 CCTCCCCAAAAGAACCCTAGAA 59.352 50.000 0.00 0.00 0.00 2.10
206 211 2.275466 CCTCCCCAAAAGAACCCTAGA 58.725 52.381 0.00 0.00 0.00 2.43
207 212 1.285078 CCCTCCCCAAAAGAACCCTAG 59.715 57.143 0.00 0.00 0.00 3.02
208 213 1.132003 TCCCTCCCCAAAAGAACCCTA 60.132 52.381 0.00 0.00 0.00 3.53
209 214 0.404346 TCCCTCCCCAAAAGAACCCT 60.404 55.000 0.00 0.00 0.00 4.34
210 215 0.710588 ATCCCTCCCCAAAAGAACCC 59.289 55.000 0.00 0.00 0.00 4.11
211 216 1.641192 AGATCCCTCCCCAAAAGAACC 59.359 52.381 0.00 0.00 0.00 3.62
212 217 3.458044 AAGATCCCTCCCCAAAAGAAC 57.542 47.619 0.00 0.00 0.00 3.01
213 218 4.485653 AAAAGATCCCTCCCCAAAAGAA 57.514 40.909 0.00 0.00 0.00 2.52
214 219 4.485653 AAAAAGATCCCTCCCCAAAAGA 57.514 40.909 0.00 0.00 0.00 2.52
233 238 9.730420 GTGCAAAGTATAAACAGAGAAAGAAAA 57.270 29.630 0.00 0.00 0.00 2.29
234 239 8.349983 GGTGCAAAGTATAAACAGAGAAAGAAA 58.650 33.333 0.00 0.00 0.00 2.52
235 240 7.500892 TGGTGCAAAGTATAAACAGAGAAAGAA 59.499 33.333 0.00 0.00 0.00 2.52
236 241 6.995686 TGGTGCAAAGTATAAACAGAGAAAGA 59.004 34.615 0.00 0.00 0.00 2.52
237 242 7.202016 TGGTGCAAAGTATAAACAGAGAAAG 57.798 36.000 0.00 0.00 0.00 2.62
238 243 7.575414 TTGGTGCAAAGTATAAACAGAGAAA 57.425 32.000 0.00 0.00 0.00 2.52
239 244 7.575414 TTTGGTGCAAAGTATAAACAGAGAA 57.425 32.000 0.00 0.00 0.00 2.87
240 245 7.575414 TTTTGGTGCAAAGTATAAACAGAGA 57.425 32.000 0.00 0.00 34.72 3.10
241 246 8.816640 ATTTTTGGTGCAAAGTATAAACAGAG 57.183 30.769 0.00 0.00 34.72 3.35
242 247 8.417106 TGATTTTTGGTGCAAAGTATAAACAGA 58.583 29.630 0.00 0.00 34.72 3.41
243 248 8.586570 TGATTTTTGGTGCAAAGTATAAACAG 57.413 30.769 0.00 0.00 34.72 3.16
246 251 9.364989 GCTATGATTTTTGGTGCAAAGTATAAA 57.635 29.630 0.00 0.00 34.72 1.40
247 252 7.978975 GGCTATGATTTTTGGTGCAAAGTATAA 59.021 33.333 0.00 0.00 34.72 0.98
248 253 7.341769 AGGCTATGATTTTTGGTGCAAAGTATA 59.658 33.333 0.00 0.00 34.72 1.47
249 254 6.155049 AGGCTATGATTTTTGGTGCAAAGTAT 59.845 34.615 0.00 0.00 34.72 2.12
250 255 5.480073 AGGCTATGATTTTTGGTGCAAAGTA 59.520 36.000 0.00 0.00 34.72 2.24
251 256 4.284234 AGGCTATGATTTTTGGTGCAAAGT 59.716 37.500 0.00 0.00 34.72 2.66
252 257 4.824289 AGGCTATGATTTTTGGTGCAAAG 58.176 39.130 0.00 0.00 34.72 2.77
253 258 4.888326 AGGCTATGATTTTTGGTGCAAA 57.112 36.364 0.00 0.00 0.00 3.68
254 259 4.142182 GCTAGGCTATGATTTTTGGTGCAA 60.142 41.667 0.00 0.00 0.00 4.08
255 260 3.381272 GCTAGGCTATGATTTTTGGTGCA 59.619 43.478 0.00 0.00 0.00 4.57
256 261 3.381272 TGCTAGGCTATGATTTTTGGTGC 59.619 43.478 0.00 0.00 0.00 5.01
257 262 5.508489 CCATGCTAGGCTATGATTTTTGGTG 60.508 44.000 0.00 0.00 0.00 4.17
258 263 4.586001 CCATGCTAGGCTATGATTTTTGGT 59.414 41.667 0.00 0.00 0.00 3.67
259 264 5.130292 CCATGCTAGGCTATGATTTTTGG 57.870 43.478 0.00 0.00 0.00 3.28
272 277 1.059098 TGGTATCAGGCCATGCTAGG 58.941 55.000 5.01 0.00 0.00 3.02
273 278 3.079578 CAATGGTATCAGGCCATGCTAG 58.920 50.000 5.01 0.00 45.21 3.42
274 279 2.710471 TCAATGGTATCAGGCCATGCTA 59.290 45.455 5.01 0.00 45.21 3.49
275 280 1.496001 TCAATGGTATCAGGCCATGCT 59.504 47.619 5.01 0.00 45.21 3.79
276 281 1.985473 TCAATGGTATCAGGCCATGC 58.015 50.000 5.01 0.00 45.21 4.06
277 282 5.169992 TCTATCAATGGTATCAGGCCATG 57.830 43.478 5.01 0.00 45.21 3.66
279 284 4.202461 GGTTCTATCAATGGTATCAGGCCA 60.202 45.833 5.01 0.00 40.68 5.36
280 285 4.042187 AGGTTCTATCAATGGTATCAGGCC 59.958 45.833 0.00 0.00 0.00 5.19
281 286 5.012561 AGAGGTTCTATCAATGGTATCAGGC 59.987 44.000 0.00 0.00 0.00 4.85
282 287 6.678568 AGAGGTTCTATCAATGGTATCAGG 57.321 41.667 0.00 0.00 0.00 3.86
283 288 8.642935 TCTAGAGGTTCTATCAATGGTATCAG 57.357 38.462 0.00 0.00 0.00 2.90
284 289 9.249053 GATCTAGAGGTTCTATCAATGGTATCA 57.751 37.037 0.00 0.00 0.00 2.15
285 290 8.402472 CGATCTAGAGGTTCTATCAATGGTATC 58.598 40.741 0.00 0.00 0.00 2.24
286 291 7.340743 CCGATCTAGAGGTTCTATCAATGGTAT 59.659 40.741 0.00 0.00 0.00 2.73
287 292 6.659668 CCGATCTAGAGGTTCTATCAATGGTA 59.340 42.308 0.00 0.00 0.00 3.25
288 293 5.478679 CCGATCTAGAGGTTCTATCAATGGT 59.521 44.000 0.00 0.00 0.00 3.55
289 294 5.478679 ACCGATCTAGAGGTTCTATCAATGG 59.521 44.000 0.00 0.00 37.49 3.16
290 295 6.582677 ACCGATCTAGAGGTTCTATCAATG 57.417 41.667 0.00 0.00 37.49 2.82
291 296 7.394923 CCTAACCGATCTAGAGGTTCTATCAAT 59.605 40.741 17.30 0.00 46.87 2.57
292 297 6.715718 CCTAACCGATCTAGAGGTTCTATCAA 59.284 42.308 17.30 1.84 46.87 2.57
293 298 6.239396 CCTAACCGATCTAGAGGTTCTATCA 58.761 44.000 17.30 2.43 46.87 2.15
294 299 5.124297 GCCTAACCGATCTAGAGGTTCTATC 59.876 48.000 17.30 0.00 46.87 2.08
295 300 5.011586 GCCTAACCGATCTAGAGGTTCTAT 58.988 45.833 17.30 0.14 46.87 1.98
296 301 4.104420 AGCCTAACCGATCTAGAGGTTCTA 59.896 45.833 17.30 3.65 46.87 2.10
297 302 3.117436 AGCCTAACCGATCTAGAGGTTCT 60.117 47.826 17.30 8.23 46.87 3.01
298 303 3.224269 AGCCTAACCGATCTAGAGGTTC 58.776 50.000 17.30 6.39 46.87 3.62
300 305 3.651904 TCTAGCCTAACCGATCTAGAGGT 59.348 47.826 0.00 0.00 43.68 3.85
301 306 4.289238 TCTAGCCTAACCGATCTAGAGG 57.711 50.000 0.00 0.00 34.35 3.69
302 307 7.227910 GGAATATCTAGCCTAACCGATCTAGAG 59.772 44.444 0.00 0.00 40.29 2.43
303 308 7.055378 GGAATATCTAGCCTAACCGATCTAGA 58.945 42.308 0.00 0.00 40.94 2.43
304 309 6.017770 CGGAATATCTAGCCTAACCGATCTAG 60.018 46.154 0.00 0.00 41.30 2.43
305 310 5.821470 CGGAATATCTAGCCTAACCGATCTA 59.179 44.000 0.00 0.00 41.30 1.98
306 311 4.641094 CGGAATATCTAGCCTAACCGATCT 59.359 45.833 0.00 0.00 41.30 2.75
307 312 4.202030 CCGGAATATCTAGCCTAACCGATC 60.202 50.000 0.00 0.00 41.30 3.69
308 313 3.700038 CCGGAATATCTAGCCTAACCGAT 59.300 47.826 0.00 0.00 41.30 4.18
309 314 3.087031 CCGGAATATCTAGCCTAACCGA 58.913 50.000 0.00 0.00 41.30 4.69
310 315 2.824341 ACCGGAATATCTAGCCTAACCG 59.176 50.000 9.46 0.00 39.02 4.44
311 316 3.056035 CCACCGGAATATCTAGCCTAACC 60.056 52.174 9.46 0.00 0.00 2.85
312 317 3.577415 ACCACCGGAATATCTAGCCTAAC 59.423 47.826 9.46 0.00 0.00 2.34
313 318 3.853207 ACCACCGGAATATCTAGCCTAA 58.147 45.455 9.46 0.00 0.00 2.69
314 319 3.537795 ACCACCGGAATATCTAGCCTA 57.462 47.619 9.46 0.00 0.00 3.93
315 320 2.400467 ACCACCGGAATATCTAGCCT 57.600 50.000 9.46 0.00 0.00 4.58
316 321 2.633481 AGAACCACCGGAATATCTAGCC 59.367 50.000 9.46 0.00 0.00 3.93
317 322 3.321111 TGAGAACCACCGGAATATCTAGC 59.679 47.826 9.46 0.00 0.00 3.42
318 323 4.872664 GTGAGAACCACCGGAATATCTAG 58.127 47.826 9.46 0.00 39.86 2.43
319 324 4.931661 GTGAGAACCACCGGAATATCTA 57.068 45.455 9.46 0.00 39.86 1.98
320 325 3.821421 GTGAGAACCACCGGAATATCT 57.179 47.619 9.46 6.36 39.86 1.98
330 335 1.876156 CAAGCAGAAGGTGAGAACCAC 59.124 52.381 0.00 0.00 44.95 4.16
331 336 1.490490 ACAAGCAGAAGGTGAGAACCA 59.510 47.619 0.00 0.00 0.00 3.67
332 337 1.876156 CACAAGCAGAAGGTGAGAACC 59.124 52.381 0.00 0.00 34.52 3.62
333 338 1.876156 CCACAAGCAGAAGGTGAGAAC 59.124 52.381 0.00 0.00 34.52 3.01
334 339 1.815408 GCCACAAGCAGAAGGTGAGAA 60.815 52.381 0.00 0.00 42.97 2.87
335 340 0.250467 GCCACAAGCAGAAGGTGAGA 60.250 55.000 0.00 0.00 42.97 3.27
336 341 2.251600 GCCACAAGCAGAAGGTGAG 58.748 57.895 0.00 0.00 42.97 3.51
337 342 4.481195 GCCACAAGCAGAAGGTGA 57.519 55.556 0.00 0.00 42.97 4.02
354 359 1.153667 GCACCAGAAGCTCCTCGAG 60.154 63.158 5.13 5.13 0.00 4.04
355 360 2.650116 GGCACCAGAAGCTCCTCGA 61.650 63.158 0.00 0.00 0.00 4.04
356 361 2.125350 GGCACCAGAAGCTCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
357 362 2.125350 CGGCACCAGAAGCTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
358 363 3.710722 CCGGCACCAGAAGCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
363 368 3.136123 CATGGCCGGCACCAGAAG 61.136 66.667 30.85 8.35 44.71 2.85
364 369 4.738998 CCATGGCCGGCACCAGAA 62.739 66.667 30.85 6.18 44.71 3.02
385 390 3.064987 CTACTCCCTGCCGTCACCG 62.065 68.421 0.00 0.00 0.00 4.94
386 391 1.982938 ACTACTCCCTGCCGTCACC 60.983 63.158 0.00 0.00 0.00 4.02
387 392 1.215647 CACTACTCCCTGCCGTCAC 59.784 63.158 0.00 0.00 0.00 3.67
388 393 1.982395 CCACTACTCCCTGCCGTCA 60.982 63.158 0.00 0.00 0.00 4.35
389 394 1.982938 ACCACTACTCCCTGCCGTC 60.983 63.158 0.00 0.00 0.00 4.79
390 395 2.119832 ACCACTACTCCCTGCCGT 59.880 61.111 0.00 0.00 0.00 5.68
391 396 2.579201 CACCACTACTCCCTGCCG 59.421 66.667 0.00 0.00 0.00 5.69
392 397 2.990479 CCACCACTACTCCCTGCC 59.010 66.667 0.00 0.00 0.00 4.85
393 398 2.269241 GCCACCACTACTCCCTGC 59.731 66.667 0.00 0.00 0.00 4.85
394 399 2.579201 CGCCACCACTACTCCCTG 59.421 66.667 0.00 0.00 0.00 4.45
395 400 2.683933 CCGCCACCACTACTCCCT 60.684 66.667 0.00 0.00 0.00 4.20
396 401 3.001406 ACCGCCACCACTACTCCC 61.001 66.667 0.00 0.00 0.00 4.30
397 402 2.264794 CACCGCCACCACTACTCC 59.735 66.667 0.00 0.00 0.00 3.85
398 403 2.434359 GCACCGCCACCACTACTC 60.434 66.667 0.00 0.00 0.00 2.59
399 404 2.450479 GAAGCACCGCCACCACTACT 62.450 60.000 0.00 0.00 0.00 2.57
400 405 2.032071 AAGCACCGCCACCACTAC 59.968 61.111 0.00 0.00 0.00 2.73
401 406 2.345991 GAAGCACCGCCACCACTA 59.654 61.111 0.00 0.00 0.00 2.74
402 407 4.643387 GGAAGCACCGCCACCACT 62.643 66.667 0.00 0.00 0.00 4.00
403 408 2.536997 ATAGGAAGCACCGCCACCAC 62.537 60.000 0.00 0.00 44.74 4.16
404 409 2.252072 GATAGGAAGCACCGCCACCA 62.252 60.000 0.00 0.00 44.74 4.17
405 410 1.523938 GATAGGAAGCACCGCCACC 60.524 63.158 0.00 0.00 44.74 4.61
406 411 0.811616 CTGATAGGAAGCACCGCCAC 60.812 60.000 0.00 0.00 44.74 5.01
407 412 1.522092 CTGATAGGAAGCACCGCCA 59.478 57.895 0.00 0.00 44.74 5.69
408 413 1.889573 GCTGATAGGAAGCACCGCC 60.890 63.158 0.00 0.00 44.74 6.13
409 414 1.153369 TGCTGATAGGAAGCACCGC 60.153 57.895 0.00 0.00 45.50 5.68
414 419 1.012841 GTGCAGTGCTGATAGGAAGC 58.987 55.000 17.60 0.00 41.22 3.86
415 420 2.687700 AGTGCAGTGCTGATAGGAAG 57.312 50.000 17.60 0.00 0.00 3.46
416 421 3.369471 GGTTAGTGCAGTGCTGATAGGAA 60.369 47.826 17.60 0.00 0.00 3.36
417 422 2.168521 GGTTAGTGCAGTGCTGATAGGA 59.831 50.000 17.60 0.00 0.00 2.94
418 423 2.555199 GGTTAGTGCAGTGCTGATAGG 58.445 52.381 17.60 0.00 0.00 2.57
419 424 2.169352 AGGGTTAGTGCAGTGCTGATAG 59.831 50.000 17.60 0.00 0.00 2.08
420 425 2.187958 AGGGTTAGTGCAGTGCTGATA 58.812 47.619 17.60 3.59 0.00 2.15
421 426 0.987294 AGGGTTAGTGCAGTGCTGAT 59.013 50.000 17.60 4.61 0.00 2.90
422 427 1.550524 CTAGGGTTAGTGCAGTGCTGA 59.449 52.381 17.60 0.00 0.00 4.26
423 428 1.550524 TCTAGGGTTAGTGCAGTGCTG 59.449 52.381 17.60 0.00 0.00 4.41
424 429 1.938585 TCTAGGGTTAGTGCAGTGCT 58.061 50.000 17.60 0.00 0.00 4.40
425 430 2.799917 CGATCTAGGGTTAGTGCAGTGC 60.800 54.545 8.58 8.58 0.00 4.40
426 431 2.223829 CCGATCTAGGGTTAGTGCAGTG 60.224 54.545 3.69 0.00 0.00 3.66
427 432 2.032620 CCGATCTAGGGTTAGTGCAGT 58.967 52.381 0.00 0.00 0.00 4.40
428 433 2.032620 ACCGATCTAGGGTTAGTGCAG 58.967 52.381 0.00 0.00 32.70 4.41
429 434 2.154567 ACCGATCTAGGGTTAGTGCA 57.845 50.000 0.00 0.00 32.70 4.57
430 435 2.557490 CCTACCGATCTAGGGTTAGTGC 59.443 54.545 0.86 0.00 38.99 4.40
431 436 3.155501 CCCTACCGATCTAGGGTTAGTG 58.844 54.545 15.95 0.00 45.94 2.74
432 437 3.522392 CCCTACCGATCTAGGGTTAGT 57.478 52.381 15.95 0.00 45.94 2.24
438 443 4.024670 CCTAAATCCCCTACCGATCTAGG 58.975 52.174 1.73 1.73 34.04 3.02
439 444 4.463186 CACCTAAATCCCCTACCGATCTAG 59.537 50.000 0.00 0.00 0.00 2.43
440 445 4.413760 CACCTAAATCCCCTACCGATCTA 58.586 47.826 0.00 0.00 0.00 1.98
441 446 3.240302 CACCTAAATCCCCTACCGATCT 58.760 50.000 0.00 0.00 0.00 2.75
442 447 2.302157 CCACCTAAATCCCCTACCGATC 59.698 54.545 0.00 0.00 0.00 3.69
443 448 2.335933 CCACCTAAATCCCCTACCGAT 58.664 52.381 0.00 0.00 0.00 4.18
444 449 1.693404 CCCACCTAAATCCCCTACCGA 60.693 57.143 0.00 0.00 0.00 4.69
445 450 0.763035 CCCACCTAAATCCCCTACCG 59.237 60.000 0.00 0.00 0.00 4.02
446 451 1.146452 CCCCACCTAAATCCCCTACC 58.854 60.000 0.00 0.00 0.00 3.18
447 452 1.903043 ACCCCACCTAAATCCCCTAC 58.097 55.000 0.00 0.00 0.00 3.18
448 453 3.604787 CATACCCCACCTAAATCCCCTA 58.395 50.000 0.00 0.00 0.00 3.53
449 454 2.428901 CATACCCCACCTAAATCCCCT 58.571 52.381 0.00 0.00 0.00 4.79
450 455 1.203013 GCATACCCCACCTAAATCCCC 60.203 57.143 0.00 0.00 0.00 4.81
451 456 1.544759 CGCATACCCCACCTAAATCCC 60.545 57.143 0.00 0.00 0.00 3.85
452 457 1.544759 CCGCATACCCCACCTAAATCC 60.545 57.143 0.00 0.00 0.00 3.01
453 458 1.892209 CCGCATACCCCACCTAAATC 58.108 55.000 0.00 0.00 0.00 2.17
454 459 0.179001 GCCGCATACCCCACCTAAAT 60.179 55.000 0.00 0.00 0.00 1.40
455 460 1.225148 GCCGCATACCCCACCTAAA 59.775 57.895 0.00 0.00 0.00 1.85
456 461 2.912714 GCCGCATACCCCACCTAA 59.087 61.111 0.00 0.00 0.00 2.69
457 462 3.542676 CGCCGCATACCCCACCTA 61.543 66.667 0.00 0.00 0.00 3.08
459 464 4.789123 AACGCCGCATACCCCACC 62.789 66.667 0.00 0.00 0.00 4.61
460 465 3.505184 CAACGCCGCATACCCCAC 61.505 66.667 0.00 0.00 0.00 4.61
461 466 4.023234 ACAACGCCGCATACCCCA 62.023 61.111 0.00 0.00 0.00 4.96
462 467 3.505184 CACAACGCCGCATACCCC 61.505 66.667 0.00 0.00 0.00 4.95
463 468 2.435234 TCACAACGCCGCATACCC 60.435 61.111 0.00 0.00 0.00 3.69
464 469 2.782615 GTCACAACGCCGCATACC 59.217 61.111 0.00 0.00 0.00 2.73
465 470 2.394136 CGTCACAACGCCGCATAC 59.606 61.111 0.00 0.00 42.82 2.39
500 505 1.335132 TAAAGAGGTGGGGGCTAGCG 61.335 60.000 9.00 0.00 0.00 4.26
501 506 1.141185 ATAAAGAGGTGGGGGCTAGC 58.859 55.000 6.04 6.04 0.00 3.42
502 507 5.187967 CACTATATAAAGAGGTGGGGGCTAG 59.812 48.000 0.00 0.00 0.00 3.42
503 508 5.091552 CACTATATAAAGAGGTGGGGGCTA 58.908 45.833 0.00 0.00 0.00 3.93
504 509 3.910627 CACTATATAAAGAGGTGGGGGCT 59.089 47.826 0.00 0.00 0.00 5.19
505 510 3.559384 GCACTATATAAAGAGGTGGGGGC 60.559 52.174 0.00 0.00 0.00 5.80
506 511 3.650942 TGCACTATATAAAGAGGTGGGGG 59.349 47.826 0.00 0.00 0.00 5.40
507 512 4.263068 CCTGCACTATATAAAGAGGTGGGG 60.263 50.000 0.00 0.00 0.00 4.96
508 513 4.348168 ACCTGCACTATATAAAGAGGTGGG 59.652 45.833 0.00 0.00 31.05 4.61
509 514 5.070446 TCACCTGCACTATATAAAGAGGTGG 59.930 44.000 19.85 9.38 46.01 4.61
510 515 5.986135 GTCACCTGCACTATATAAAGAGGTG 59.014 44.000 16.73 16.73 46.93 4.00
511 516 5.661312 TGTCACCTGCACTATATAAAGAGGT 59.339 40.000 0.00 0.00 32.43 3.85
512 517 6.161855 TGTCACCTGCACTATATAAAGAGG 57.838 41.667 0.00 0.00 0.00 3.69
513 518 6.219473 CCTGTCACCTGCACTATATAAAGAG 58.781 44.000 0.00 0.00 0.00 2.85
514 519 5.070446 CCCTGTCACCTGCACTATATAAAGA 59.930 44.000 0.00 0.00 0.00 2.52
515 520 5.300752 CCCTGTCACCTGCACTATATAAAG 58.699 45.833 0.00 0.00 0.00 1.85
516 521 4.102524 CCCCTGTCACCTGCACTATATAAA 59.897 45.833 0.00 0.00 0.00 1.40
517 522 3.646162 CCCCTGTCACCTGCACTATATAA 59.354 47.826 0.00 0.00 0.00 0.98
518 523 3.239449 CCCCTGTCACCTGCACTATATA 58.761 50.000 0.00 0.00 0.00 0.86
519 524 2.050144 CCCCTGTCACCTGCACTATAT 58.950 52.381 0.00 0.00 0.00 0.86
520 525 1.496060 CCCCTGTCACCTGCACTATA 58.504 55.000 0.00 0.00 0.00 1.31
521 526 1.915078 GCCCCTGTCACCTGCACTAT 61.915 60.000 0.00 0.00 0.00 2.12
522 527 2.592993 GCCCCTGTCACCTGCACTA 61.593 63.158 0.00 0.00 0.00 2.74
523 528 3.958860 GCCCCTGTCACCTGCACT 61.959 66.667 0.00 0.00 0.00 4.40
663 668 0.893447 CGAACCCTTACCCGAAGACT 59.107 55.000 0.00 0.00 37.33 3.24
1013 1112 3.121030 CAACTGCGGCTCCTTCGG 61.121 66.667 0.00 0.00 0.00 4.30
1014 1113 3.793144 GCAACTGCGGCTCCTTCG 61.793 66.667 0.00 0.00 0.00 3.79
2838 3026 6.705825 GTGACAAGAAACCTTTATTTGCCAAT 59.294 34.615 0.00 0.00 0.00 3.16
4913 5564 3.873812 CTATGGGTGACGGGCCCC 61.874 72.222 18.66 2.97 45.49 5.80
4914 5565 3.087906 ACTATGGGTGACGGGCCC 61.088 66.667 13.57 13.57 46.26 5.80
4925 5576 1.819632 GGCGCTCAACCCACTATGG 60.820 63.158 7.64 0.00 37.25 2.74
4926 5577 3.813596 GGCGCTCAACCCACTATG 58.186 61.111 7.64 0.00 0.00 2.23
4934 5585 4.467084 TGATCGGGGGCGCTCAAC 62.467 66.667 10.74 0.00 0.00 3.18
4935 5586 4.161295 CTGATCGGGGGCGCTCAA 62.161 66.667 10.74 0.00 0.00 3.02
4946 5597 2.142357 TTAGATCCGCGCCCTGATCG 62.142 60.000 18.09 0.00 41.76 3.69
4947 5598 0.389166 CTTAGATCCGCGCCCTGATC 60.389 60.000 17.05 17.05 38.10 2.92
4948 5599 1.668294 CTTAGATCCGCGCCCTGAT 59.332 57.895 0.00 0.88 0.00 2.90
4949 5600 2.498941 CCTTAGATCCGCGCCCTGA 61.499 63.158 0.00 0.00 0.00 3.86
4950 5601 2.029666 CCTTAGATCCGCGCCCTG 59.970 66.667 0.00 0.00 0.00 4.45
4951 5602 3.234730 CCCTTAGATCCGCGCCCT 61.235 66.667 0.00 0.00 0.00 5.19
4952 5603 4.990553 GCCCTTAGATCCGCGCCC 62.991 72.222 0.00 0.00 0.00 6.13
4953 5604 4.990553 GGCCCTTAGATCCGCGCC 62.991 72.222 0.00 0.00 0.00 6.53
4954 5605 4.990553 GGGCCCTTAGATCCGCGC 62.991 72.222 17.04 0.00 0.00 6.86
4955 5606 4.664677 CGGGCCCTTAGATCCGCG 62.665 72.222 22.43 0.00 35.95 6.46
4956 5607 4.315941 CCGGGCCCTTAGATCCGC 62.316 72.222 22.43 0.00 41.02 5.54
4957 5608 2.842936 ACCGGGCCCTTAGATCCG 60.843 66.667 22.43 3.11 41.90 4.18
4958 5609 2.819284 CCACCGGGCCCTTAGATCC 61.819 68.421 22.43 0.00 0.00 3.36
4959 5610 2.819284 CCCACCGGGCCCTTAGATC 61.819 68.421 22.43 0.00 35.35 2.75
4960 5611 2.772622 CCCACCGGGCCCTTAGAT 60.773 66.667 22.43 0.00 35.35 1.98
4988 5639 3.369381 GGATGATCTCCACCGTGTG 57.631 57.895 0.00 0.00 44.26 3.82
4996 5647 6.463190 GGGAAGTACTTGTTAGGATGATCTCC 60.463 46.154 14.14 2.29 45.33 3.71
4997 5648 6.325286 AGGGAAGTACTTGTTAGGATGATCTC 59.675 42.308 14.14 0.00 0.00 2.75
4998 5649 6.206042 AGGGAAGTACTTGTTAGGATGATCT 58.794 40.000 14.14 0.00 0.00 2.75
4999 5650 6.325286 AGAGGGAAGTACTTGTTAGGATGATC 59.675 42.308 14.14 0.00 0.00 2.92
5000 5651 6.098982 CAGAGGGAAGTACTTGTTAGGATGAT 59.901 42.308 14.14 0.00 0.00 2.45
5001 5652 5.422331 CAGAGGGAAGTACTTGTTAGGATGA 59.578 44.000 14.14 0.00 0.00 2.92
5002 5653 5.187967 ACAGAGGGAAGTACTTGTTAGGATG 59.812 44.000 14.14 5.69 0.00 3.51
5003 5654 5.187967 CACAGAGGGAAGTACTTGTTAGGAT 59.812 44.000 14.14 0.00 0.00 3.24
5004 5655 4.527038 CACAGAGGGAAGTACTTGTTAGGA 59.473 45.833 14.14 0.00 0.00 2.94
5005 5656 4.822026 CACAGAGGGAAGTACTTGTTAGG 58.178 47.826 14.14 0.75 0.00 2.69
5006 5657 4.021016 AGCACAGAGGGAAGTACTTGTTAG 60.021 45.833 14.14 0.60 0.00 2.34
5007 5658 3.901844 AGCACAGAGGGAAGTACTTGTTA 59.098 43.478 14.14 0.00 0.00 2.41
5008 5659 2.706190 AGCACAGAGGGAAGTACTTGTT 59.294 45.455 14.14 0.00 0.00 2.83
5009 5660 2.330216 AGCACAGAGGGAAGTACTTGT 58.670 47.619 14.14 0.73 0.00 3.16
5010 5661 4.744795 ATAGCACAGAGGGAAGTACTTG 57.255 45.455 14.14 0.00 0.00 3.16
5011 5662 5.855740 GTATAGCACAGAGGGAAGTACTT 57.144 43.478 8.13 8.13 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.