Multiple sequence alignment - TraesCS7A01G447200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G447200 chr7A 100.000 2336 0 0 1 2336 642026769 642029104 0.000000e+00 4314.0
1 TraesCS7A01G447200 chr7A 98.074 623 11 1 736 1358 174890042 174889421 0.000000e+00 1083.0
2 TraesCS7A01G447200 chr7A 100.000 36 0 0 2270 2305 289157888 289157923 1.500000e-07 67.6
3 TraesCS7A01G447200 chr7A 100.000 29 0 0 2306 2334 289158176 289158204 1.000000e-03 54.7
4 TraesCS7A01G447200 chr5A 98.170 1366 24 1 1 1366 549334185 549335549 0.000000e+00 2383.0
5 TraesCS7A01G447200 chr5A 97.143 35 1 0 2268 2302 696474969 696475003 2.510000e-05 60.2
6 TraesCS7A01G447200 chr1A 97.588 1368 30 2 1 1368 543423798 543422434 0.000000e+00 2340.0
7 TraesCS7A01G447200 chr1A 96.693 1119 37 0 247 1365 589890412 589891530 0.000000e+00 1862.0
8 TraesCS7A01G447200 chr1A 96.016 251 10 0 1 251 589881405 589881655 2.160000e-110 409.0
9 TraesCS7A01G447200 chr1A 86.792 53 4 3 2266 2316 555125228 555125177 3.240000e-04 56.5
10 TraesCS7A01G447200 chr1A 100.000 29 0 0 2306 2334 163607537 163607565 1.000000e-03 54.7
11 TraesCS7A01G447200 chr2A 96.703 1365 43 2 2 1366 2316749 2315387 0.000000e+00 2270.0
12 TraesCS7A01G447200 chr2A 87.500 64 1 1 2271 2334 652011431 652011487 1.500000e-07 67.6
13 TraesCS7A01G447200 chr2A 100.000 29 0 0 2306 2334 726978980 726978952 1.000000e-03 54.7
14 TraesCS7A01G447200 chr6A 95.833 1128 44 3 182 1308 100678612 100679737 0.000000e+00 1820.0
15 TraesCS7A01G447200 chr6A 100.000 28 0 0 2307 2334 255183430 255183457 4.000000e-03 52.8
16 TraesCS7A01G447200 chr1D 95.797 1023 42 1 341 1363 481918578 481919599 0.000000e+00 1650.0
17 TraesCS7A01G447200 chr1D 96.557 610 19 2 756 1365 446279290 446279897 0.000000e+00 1009.0
18 TraesCS7A01G447200 chr1D 95.853 434 17 1 1368 1801 161712944 161713376 0.000000e+00 701.0
19 TraesCS7A01G447200 chr1D 94.700 434 16 4 1368 1800 161705756 161706183 0.000000e+00 667.0
20 TraesCS7A01G447200 chr1D 95.376 346 16 0 1 346 481901947 481902292 3.390000e-153 551.0
21 TraesCS7A01G447200 chr7B 94.167 720 29 2 330 1049 674073810 674073104 0.000000e+00 1085.0
22 TraesCS7A01G447200 chr5D 96.809 470 13 1 1809 2276 396165062 396164593 0.000000e+00 784.0
23 TraesCS7A01G447200 chr5D 96.536 433 14 1 1368 1800 433379430 433379861 0.000000e+00 715.0
24 TraesCS7A01G447200 chr5D 96.305 433 15 1 1368 1800 433377226 433377657 0.000000e+00 710.0
25 TraesCS7A01G447200 chr5D 96.074 433 16 1 1368 1800 433375022 433375453 0.000000e+00 704.0
26 TraesCS7A01G447200 chr5D 95.843 433 18 0 1368 1800 433372817 433373249 0.000000e+00 701.0
27 TraesCS7A01G447200 chr5D 98.485 66 1 0 2211 2276 396170526 396170591 1.470000e-22 117.0
28 TraesCS7A01G447200 chr7D 95.319 470 20 1 1809 2276 22670451 22670920 0.000000e+00 745.0
29 TraesCS7A01G447200 chr7D 98.485 66 1 0 2211 2276 22664989 22664924 1.470000e-22 117.0
30 TraesCS7A01G447200 chr7D 100.000 33 0 0 2270 2302 284403688 284403720 6.970000e-06 62.1
31 TraesCS7A01G447200 chr6D 96.544 434 15 0 1368 1801 461152607 461152174 0.000000e+00 719.0
32 TraesCS7A01G447200 chr4B 96.119 438 17 0 1364 1801 119175918 119176355 0.000000e+00 715.0
33 TraesCS7A01G447200 chrUn 96.305 433 15 1 1368 1800 366136963 366136532 0.000000e+00 710.0
34 TraesCS7A01G447200 chr2B 96.306 379 12 2 988 1366 152714850 152714474 2.550000e-174 621.0
35 TraesCS7A01G447200 chr2B 96.774 62 2 0 2215 2276 10660732 10660671 1.140000e-18 104.0
36 TraesCS7A01G447200 chr2B 97.222 36 1 0 2270 2305 87120132 87120097 6.970000e-06 62.1
37 TraesCS7A01G447200 chr5B 92.453 53 4 0 2213 2265 232563668 232563720 2.490000e-10 76.8
38 TraesCS7A01G447200 chr5B 94.737 38 2 0 2268 2305 528372232 528372195 2.510000e-05 60.2
39 TraesCS7A01G447200 chr3D 97.222 36 0 1 2270 2305 580856189 580856223 2.510000e-05 60.2
40 TraesCS7A01G447200 chr3D 100.000 29 0 0 2306 2334 308063503 308063475 1.000000e-03 54.7
41 TraesCS7A01G447200 chr3B 97.143 35 1 0 2268 2302 666453622 666453656 2.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G447200 chr7A 642026769 642029104 2335 False 4314.0 4314 100.0000 1 2336 1 chr7A.!!$F1 2335
1 TraesCS7A01G447200 chr7A 174889421 174890042 621 True 1083.0 1083 98.0740 736 1358 1 chr7A.!!$R1 622
2 TraesCS7A01G447200 chr5A 549334185 549335549 1364 False 2383.0 2383 98.1700 1 1366 1 chr5A.!!$F1 1365
3 TraesCS7A01G447200 chr1A 543422434 543423798 1364 True 2340.0 2340 97.5880 1 1368 1 chr1A.!!$R1 1367
4 TraesCS7A01G447200 chr1A 589890412 589891530 1118 False 1862.0 1862 96.6930 247 1365 1 chr1A.!!$F3 1118
5 TraesCS7A01G447200 chr2A 2315387 2316749 1362 True 2270.0 2270 96.7030 2 1366 1 chr2A.!!$R1 1364
6 TraesCS7A01G447200 chr6A 100678612 100679737 1125 False 1820.0 1820 95.8330 182 1308 1 chr6A.!!$F1 1126
7 TraesCS7A01G447200 chr1D 481918578 481919599 1021 False 1650.0 1650 95.7970 341 1363 1 chr1D.!!$F5 1022
8 TraesCS7A01G447200 chr1D 446279290 446279897 607 False 1009.0 1009 96.5570 756 1365 1 chr1D.!!$F3 609
9 TraesCS7A01G447200 chr7B 674073104 674073810 706 True 1085.0 1085 94.1670 330 1049 1 chr7B.!!$R1 719
10 TraesCS7A01G447200 chr5D 433372817 433379861 7044 False 707.5 715 96.1895 1368 1800 4 chr5D.!!$F2 432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.251634 CCTCAGTCTCCTTCAAGGCC 59.748 60.0 0.0 0.0 34.61 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 7124 0.036732 TCCTTGTGTGTCTCCATGGC 59.963 55.0 6.96 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.251634 CCTCAGTCTCCTTCAAGGCC 59.748 60.000 0.00 0.00 34.61 5.19
173 174 0.813610 AAGCAAACTTTTTGGCCGGC 60.814 50.000 21.18 21.18 29.41 6.13
178 179 3.291383 CTTTTTGGCCGGCGGACA 61.291 61.111 34.54 34.54 40.08 4.02
428 429 3.378512 TCTGGAGAACTCTACATGGCAT 58.621 45.455 0.00 0.00 35.99 4.40
511 512 2.682856 TGCGAAGAAGCTGAAAGTGTTT 59.317 40.909 0.00 0.00 38.13 2.83
534 535 2.801063 CACATGCTCTTTTTATGCCCG 58.199 47.619 0.00 0.00 0.00 6.13
846 847 5.104982 TGCAAAAGAAAAGAGAAACCCATGT 60.105 36.000 0.00 0.00 0.00 3.21
967 969 1.537202 GGCTGTTCTTGGTAGCAAGTG 59.463 52.381 28.63 19.20 39.15 3.16
986 988 0.837272 GACAATGTAGCTGGGGCCTA 59.163 55.000 0.84 0.00 39.73 3.93
1116 1118 2.156098 GGCTATGCAGGATGGGGGA 61.156 63.158 0.00 0.00 35.86 4.81
1416 3624 5.946486 AGAACCTGGACTCAAAGAAAAGAT 58.054 37.500 0.00 0.00 0.00 2.40
1483 5895 2.288666 TGTCACACAAGAACTTGGAGC 58.711 47.619 17.05 5.22 44.45 4.70
1564 5976 0.108329 TCTTCCTCGGGTTCGATTGC 60.108 55.000 0.00 0.00 45.04 3.56
1640 6052 1.578583 GTGTTTGCACGTCTGGTACT 58.421 50.000 0.00 0.00 35.75 2.73
1659 6071 7.110155 TGGTACTTTGGTCATATTCTTCTTCC 58.890 38.462 0.00 0.00 0.00 3.46
1662 6074 3.838244 TGGTCATATTCTTCTTCCCCG 57.162 47.619 0.00 0.00 0.00 5.73
1685 6097 5.290643 CGGAAACAACTTGCATTTTTCTGAA 59.709 36.000 1.60 0.00 35.45 3.02
1710 6122 0.531657 TTGCATCAAATTCCAGCGGG 59.468 50.000 0.00 0.00 0.00 6.13
1722 6134 0.321653 CCAGCGGGCTAAGTTTCTGT 60.322 55.000 0.00 0.00 0.00 3.41
1793 6205 2.380084 TAGTTTCGGCACCAGTGATC 57.620 50.000 0.99 0.00 0.00 2.92
1794 6206 0.396435 AGTTTCGGCACCAGTGATCA 59.604 50.000 0.99 0.00 0.00 2.92
1795 6207 0.517316 GTTTCGGCACCAGTGATCAC 59.483 55.000 18.47 18.47 0.00 3.06
1796 6208 0.107643 TTTCGGCACCAGTGATCACA 59.892 50.000 27.02 1.19 0.00 3.58
1797 6209 0.324614 TTCGGCACCAGTGATCACAT 59.675 50.000 27.02 9.85 0.00 3.21
1798 6210 0.108186 TCGGCACCAGTGATCACATC 60.108 55.000 27.02 10.67 0.00 3.06
1799 6211 0.391528 CGGCACCAGTGATCACATCA 60.392 55.000 27.02 0.00 36.84 3.07
1800 6212 1.825090 GGCACCAGTGATCACATCAA 58.175 50.000 27.02 0.00 41.69 2.57
1801 6213 1.741706 GGCACCAGTGATCACATCAAG 59.258 52.381 27.02 13.49 41.69 3.02
1802 6214 2.430465 GCACCAGTGATCACATCAAGT 58.570 47.619 27.02 13.30 41.69 3.16
1813 6225 3.492421 CACATCAAGTGCCATACCAAC 57.508 47.619 0.00 0.00 42.15 3.77
1815 6227 3.444742 CACATCAAGTGCCATACCAACAT 59.555 43.478 0.00 0.00 42.15 2.71
1817 6229 2.722094 TCAAGTGCCATACCAACATCC 58.278 47.619 0.00 0.00 0.00 3.51
1831 6914 8.928733 CATACCAACATCCATTTTTCTTTTCTG 58.071 33.333 0.00 0.00 0.00 3.02
1832 6915 7.123355 ACCAACATCCATTTTTCTTTTCTGA 57.877 32.000 0.00 0.00 0.00 3.27
1834 6917 6.144402 CCAACATCCATTTTTCTTTTCTGACG 59.856 38.462 0.00 0.00 0.00 4.35
1836 6919 7.038154 ACATCCATTTTTCTTTTCTGACGAA 57.962 32.000 0.00 0.00 0.00 3.85
1838 6921 7.435192 ACATCCATTTTTCTTTTCTGACGAAAC 59.565 33.333 0.00 0.00 38.77 2.78
1840 6923 6.039616 CCATTTTTCTTTTCTGACGAAACCA 58.960 36.000 0.00 0.00 38.77 3.67
1843 6926 2.912771 TCTTTTCTGACGAAACCAGCA 58.087 42.857 0.00 0.00 38.77 4.41
1844 6927 3.476552 TCTTTTCTGACGAAACCAGCAT 58.523 40.909 0.00 0.00 38.77 3.79
1845 6928 3.498397 TCTTTTCTGACGAAACCAGCATC 59.502 43.478 0.00 0.00 38.77 3.91
1846 6929 1.808411 TTCTGACGAAACCAGCATCC 58.192 50.000 0.00 0.00 0.00 3.51
1847 6930 0.684535 TCTGACGAAACCAGCATCCA 59.315 50.000 0.00 0.00 0.00 3.41
1848 6931 0.798776 CTGACGAAACCAGCATCCAC 59.201 55.000 0.00 0.00 0.00 4.02
1850 6933 1.202758 TGACGAAACCAGCATCCACTT 60.203 47.619 0.00 0.00 0.00 3.16
1851 6934 1.464997 GACGAAACCAGCATCCACTTC 59.535 52.381 0.00 0.00 0.00 3.01
1854 6937 3.244422 ACGAAACCAGCATCCACTTCTTA 60.244 43.478 0.00 0.00 0.00 2.10
1855 6938 3.125316 CGAAACCAGCATCCACTTCTTAC 59.875 47.826 0.00 0.00 0.00 2.34
1856 6939 2.789409 ACCAGCATCCACTTCTTACC 57.211 50.000 0.00 0.00 0.00 2.85
1859 6942 2.237143 CCAGCATCCACTTCTTACCTGA 59.763 50.000 0.00 0.00 0.00 3.86
1861 6944 3.937706 CAGCATCCACTTCTTACCTGAAG 59.062 47.826 0.00 0.00 46.33 3.02
1862 6945 3.840666 AGCATCCACTTCTTACCTGAAGA 59.159 43.478 10.68 0.00 44.40 2.87
1879 6962 5.545588 CTGAAGAACAGGAAGAGATGAACA 58.454 41.667 0.00 0.00 42.39 3.18
1880 6963 5.928976 TGAAGAACAGGAAGAGATGAACAA 58.071 37.500 0.00 0.00 0.00 2.83
1882 6965 5.815233 AGAACAGGAAGAGATGAACAAGA 57.185 39.130 0.00 0.00 0.00 3.02
1883 6966 6.179906 AGAACAGGAAGAGATGAACAAGAA 57.820 37.500 0.00 0.00 0.00 2.52
1884 6967 5.994668 AGAACAGGAAGAGATGAACAAGAAC 59.005 40.000 0.00 0.00 0.00 3.01
1885 6968 5.296151 ACAGGAAGAGATGAACAAGAACA 57.704 39.130 0.00 0.00 0.00 3.18
1886 6969 5.684704 ACAGGAAGAGATGAACAAGAACAA 58.315 37.500 0.00 0.00 0.00 2.83
1888 6971 7.453393 ACAGGAAGAGATGAACAAGAACAATA 58.547 34.615 0.00 0.00 0.00 1.90
1889 6972 7.605691 ACAGGAAGAGATGAACAAGAACAATAG 59.394 37.037 0.00 0.00 0.00 1.73
1890 6973 7.065563 CAGGAAGAGATGAACAAGAACAATAGG 59.934 40.741 0.00 0.00 0.00 2.57
1891 6974 6.317391 GGAAGAGATGAACAAGAACAATAGGG 59.683 42.308 0.00 0.00 0.00 3.53
1892 6975 5.749462 AGAGATGAACAAGAACAATAGGGG 58.251 41.667 0.00 0.00 0.00 4.79
1894 6977 6.159398 AGAGATGAACAAGAACAATAGGGGAT 59.841 38.462 0.00 0.00 0.00 3.85
1895 6978 6.360618 AGATGAACAAGAACAATAGGGGATC 58.639 40.000 0.00 0.00 0.00 3.36
1896 6979 4.513442 TGAACAAGAACAATAGGGGATCG 58.487 43.478 0.00 0.00 0.00 3.69
1897 6980 3.560636 ACAAGAACAATAGGGGATCGG 57.439 47.619 0.00 0.00 0.00 4.18
1899 6982 0.393077 AGAACAATAGGGGATCGGCG 59.607 55.000 0.00 0.00 0.00 6.46
1900 6983 0.602905 GAACAATAGGGGATCGGCGG 60.603 60.000 7.21 0.00 0.00 6.13
1933 7016 2.234300 GACCACGAGTCAAACAGGAA 57.766 50.000 5.64 0.00 45.55 3.36
1934 7017 1.865340 GACCACGAGTCAAACAGGAAC 59.135 52.381 5.64 0.00 45.55 3.62
1935 7018 1.485066 ACCACGAGTCAAACAGGAACT 59.515 47.619 0.00 0.00 43.88 3.01
1936 7019 2.135933 CCACGAGTCAAACAGGAACTC 58.864 52.381 0.00 0.00 34.60 3.01
1937 7020 2.135933 CACGAGTCAAACAGGAACTCC 58.864 52.381 0.00 0.00 34.60 3.85
1938 7021 1.760613 ACGAGTCAAACAGGAACTCCA 59.239 47.619 0.00 0.00 34.60 3.86
1939 7022 2.169769 ACGAGTCAAACAGGAACTCCAA 59.830 45.455 0.00 0.00 34.60 3.53
1940 7023 2.802816 CGAGTCAAACAGGAACTCCAAG 59.197 50.000 0.00 0.00 34.60 3.61
1941 7024 3.492656 CGAGTCAAACAGGAACTCCAAGA 60.493 47.826 0.00 0.00 34.60 3.02
1943 7026 3.199946 AGTCAAACAGGAACTCCAAGACA 59.800 43.478 0.00 0.00 34.60 3.41
1945 7028 4.035675 GTCAAACAGGAACTCCAAGACAAG 59.964 45.833 0.00 0.00 34.60 3.16
1948 7031 2.149578 CAGGAACTCCAAGACAAGCAG 58.850 52.381 0.00 0.00 34.60 4.24
1949 7032 0.877743 GGAACTCCAAGACAAGCAGC 59.122 55.000 0.00 0.00 35.64 5.25
1950 7033 0.877743 GAACTCCAAGACAAGCAGCC 59.122 55.000 0.00 0.00 0.00 4.85
1951 7034 0.886490 AACTCCAAGACAAGCAGCCG 60.886 55.000 0.00 0.00 0.00 5.52
1952 7035 2.669569 TCCAAGACAAGCAGCCGC 60.670 61.111 0.00 0.00 38.99 6.53
1974 7057 1.579698 CTCCATTGAGCCATGACGAG 58.420 55.000 0.00 0.00 0.00 4.18
1975 7058 0.178767 TCCATTGAGCCATGACGAGG 59.821 55.000 0.00 0.00 0.00 4.63
1976 7059 0.816825 CCATTGAGCCATGACGAGGG 60.817 60.000 0.00 0.00 0.00 4.30
1982 7065 4.530857 CCATGACGAGGGCGGTCC 62.531 72.222 0.00 0.00 43.17 4.46
2005 7088 2.515523 CAGGGCGCTGGAGAATGG 60.516 66.667 22.42 0.00 0.00 3.16
2006 7089 3.801997 AGGGCGCTGGAGAATGGG 61.802 66.667 7.64 0.00 0.00 4.00
2007 7090 4.883354 GGGCGCTGGAGAATGGGG 62.883 72.222 7.64 0.00 0.00 4.96
2008 7091 4.883354 GGCGCTGGAGAATGGGGG 62.883 72.222 7.64 0.00 0.00 5.40
2009 7092 3.797353 GCGCTGGAGAATGGGGGA 61.797 66.667 0.00 0.00 0.00 4.81
2010 7093 3.125376 GCGCTGGAGAATGGGGGAT 62.125 63.158 0.00 0.00 0.00 3.85
2011 7094 1.072159 CGCTGGAGAATGGGGGATC 59.928 63.158 0.00 0.00 0.00 3.36
2012 7095 1.072159 GCTGGAGAATGGGGGATCG 59.928 63.158 0.00 0.00 0.00 3.69
2013 7096 1.410850 GCTGGAGAATGGGGGATCGA 61.411 60.000 0.00 0.00 0.00 3.59
2015 7098 1.002888 CTGGAGAATGGGGGATCGATG 59.997 57.143 0.54 0.00 0.00 3.84
2016 7099 0.326264 GGAGAATGGGGGATCGATGG 59.674 60.000 0.54 0.00 0.00 3.51
2017 7100 1.352083 GAGAATGGGGGATCGATGGA 58.648 55.000 0.54 0.00 0.00 3.41
2018 7101 1.277557 GAGAATGGGGGATCGATGGAG 59.722 57.143 0.54 0.00 0.00 3.86
2019 7102 0.326264 GAATGGGGGATCGATGGAGG 59.674 60.000 0.54 0.00 0.00 4.30
2020 7103 0.104462 AATGGGGGATCGATGGAGGA 60.104 55.000 0.54 0.00 0.00 3.71
2021 7104 0.546267 ATGGGGGATCGATGGAGGAG 60.546 60.000 0.54 0.00 0.00 3.69
2022 7105 1.915769 GGGGGATCGATGGAGGAGG 60.916 68.421 0.54 0.00 0.00 4.30
2023 7106 1.156330 GGGGATCGATGGAGGAGGA 59.844 63.158 0.54 0.00 0.00 3.71
2027 7110 3.173965 GGGATCGATGGAGGAGGAATTA 58.826 50.000 0.54 0.00 0.00 1.40
2028 7111 3.055747 GGGATCGATGGAGGAGGAATTAC 60.056 52.174 0.54 0.00 0.00 1.89
2029 7112 3.367498 GGATCGATGGAGGAGGAATTACG 60.367 52.174 0.54 0.00 0.00 3.18
2030 7113 2.662866 TCGATGGAGGAGGAATTACGT 58.337 47.619 0.00 0.00 0.00 3.57
2032 7115 3.819337 TCGATGGAGGAGGAATTACGTAG 59.181 47.826 0.00 0.00 0.00 3.51
2035 7118 3.028850 TGGAGGAGGAATTACGTAGGTG 58.971 50.000 0.00 0.00 0.00 4.00
2036 7119 2.364647 GGAGGAGGAATTACGTAGGTGG 59.635 54.545 0.00 0.00 0.00 4.61
2037 7120 2.364647 GAGGAGGAATTACGTAGGTGGG 59.635 54.545 0.00 0.00 0.00 4.61
2038 7121 1.415289 GGAGGAATTACGTAGGTGGGG 59.585 57.143 0.00 0.00 0.00 4.96
2039 7122 0.835276 AGGAATTACGTAGGTGGGGC 59.165 55.000 0.00 0.00 0.00 5.80
2041 7124 0.531311 GAATTACGTAGGTGGGGCGG 60.531 60.000 0.00 0.00 0.00 6.13
2042 7125 2.598098 AATTACGTAGGTGGGGCGGC 62.598 60.000 0.00 0.00 0.00 6.53
2046 7129 4.875713 GTAGGTGGGGCGGCCATG 62.876 72.222 30.95 0.00 0.00 3.66
2065 7148 3.475566 TGGAGACACACAAGGAAAGAG 57.524 47.619 0.00 0.00 33.40 2.85
2066 7149 3.038280 TGGAGACACACAAGGAAAGAGA 58.962 45.455 0.00 0.00 33.40 3.10
2068 7151 4.061596 GGAGACACACAAGGAAAGAGAAG 58.938 47.826 0.00 0.00 0.00 2.85
2069 7152 4.202264 GGAGACACACAAGGAAAGAGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
2071 7154 5.119694 AGACACACAAGGAAAGAGAAGAAC 58.880 41.667 0.00 0.00 0.00 3.01
2072 7155 5.104259 ACACACAAGGAAAGAGAAGAACT 57.896 39.130 0.00 0.00 0.00 3.01
2079 7162 6.987404 ACAAGGAAAGAGAAGAACTACAGAAC 59.013 38.462 0.00 0.00 0.00 3.01
2081 7164 6.754193 AGGAAAGAGAAGAACTACAGAACAG 58.246 40.000 0.00 0.00 0.00 3.16
2082 7165 6.551601 AGGAAAGAGAAGAACTACAGAACAGA 59.448 38.462 0.00 0.00 0.00 3.41
2084 7167 5.975693 AGAGAAGAACTACAGAACAGAGG 57.024 43.478 0.00 0.00 0.00 3.69
2086 7169 5.710099 AGAGAAGAACTACAGAACAGAGGAG 59.290 44.000 0.00 0.00 0.00 3.69
2087 7170 4.770010 AGAAGAACTACAGAACAGAGGAGG 59.230 45.833 0.00 0.00 0.00 4.30
2089 7172 1.562783 ACTACAGAACAGAGGAGGGC 58.437 55.000 0.00 0.00 0.00 5.19
2090 7173 0.457851 CTACAGAACAGAGGAGGGCG 59.542 60.000 0.00 0.00 0.00 6.13
2092 7175 1.254284 ACAGAACAGAGGAGGGCGAG 61.254 60.000 0.00 0.00 0.00 5.03
2094 7177 0.968393 AGAACAGAGGAGGGCGAGAC 60.968 60.000 0.00 0.00 0.00 3.36
2095 7178 0.968393 GAACAGAGGAGGGCGAGACT 60.968 60.000 0.00 0.00 0.00 3.24
2098 7181 0.754957 CAGAGGAGGGCGAGACTCAT 60.755 60.000 2.82 0.00 36.70 2.90
2099 7182 0.467290 AGAGGAGGGCGAGACTCATC 60.467 60.000 2.82 7.67 43.86 2.92
2100 7183 0.467290 GAGGAGGGCGAGACTCATCT 60.467 60.000 2.82 0.00 41.23 2.90
2101 7184 0.754957 AGGAGGGCGAGACTCATCTG 60.755 60.000 2.82 0.00 34.34 2.90
2102 7185 1.739049 GAGGGCGAGACTCATCTGG 59.261 63.158 2.82 0.00 34.34 3.86
2105 7188 2.279120 GCGAGACTCATCTGGCGG 60.279 66.667 2.82 0.00 45.27 6.13
2106 7189 2.279120 CGAGACTCATCTGGCGGC 60.279 66.667 0.00 0.00 34.34 6.53
2107 7190 2.107953 GAGACTCATCTGGCGGCC 59.892 66.667 13.32 13.32 34.34 6.13
2109 7192 2.037620 GAGACTCATCTGGCGGCCAT 62.038 60.000 24.10 6.15 34.34 4.40
2111 7194 2.593725 CTCATCTGGCGGCCATGG 60.594 66.667 24.10 12.33 30.82 3.66
2128 7211 4.388499 GCGGCGAACAGGGGAGAA 62.388 66.667 12.98 0.00 0.00 2.87
2129 7212 2.125512 CGGCGAACAGGGGAGAAG 60.126 66.667 0.00 0.00 0.00 2.85
2130 7213 2.269241 GGCGAACAGGGGAGAAGG 59.731 66.667 0.00 0.00 0.00 3.46
2132 7215 1.677552 GCGAACAGGGGAGAAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
2133 7216 0.391793 GCGAACAGGGGAGAAGGAAG 60.392 60.000 0.00 0.00 0.00 3.46
2134 7217 1.267121 CGAACAGGGGAGAAGGAAGA 58.733 55.000 0.00 0.00 0.00 2.87
2135 7218 1.205893 CGAACAGGGGAGAAGGAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
2136 7219 1.557371 GAACAGGGGAGAAGGAAGAGG 59.443 57.143 0.00 0.00 0.00 3.69
2137 7220 0.252927 ACAGGGGAGAAGGAAGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
2138 7221 0.985490 CAGGGGAGAAGGAAGAGGGG 60.985 65.000 0.00 0.00 0.00 4.79
2141 7224 0.913205 GGGAGAAGGAAGAGGGGAAC 59.087 60.000 0.00 0.00 0.00 3.62
2143 7226 2.292984 GGGAGAAGGAAGAGGGGAACTA 60.293 54.545 0.00 0.00 0.00 2.24
2144 7227 3.035363 GGAGAAGGAAGAGGGGAACTAG 58.965 54.545 0.00 0.00 0.00 2.57
2145 7228 3.035363 GAGAAGGAAGAGGGGAACTAGG 58.965 54.545 0.00 0.00 0.00 3.02
2146 7229 2.120312 GAAGGAAGAGGGGAACTAGGG 58.880 57.143 0.00 0.00 0.00 3.53
2147 7230 1.405243 AGGAAGAGGGGAACTAGGGA 58.595 55.000 0.00 0.00 0.00 4.20
2148 7231 1.948243 AGGAAGAGGGGAACTAGGGAT 59.052 52.381 0.00 0.00 0.00 3.85
2152 7235 0.106894 GAGGGGAACTAGGGATTGCG 59.893 60.000 0.00 0.00 0.00 4.85
2153 7236 0.620700 AGGGGAACTAGGGATTGCGT 60.621 55.000 0.00 0.00 0.00 5.24
2154 7237 1.125633 GGGGAACTAGGGATTGCGTA 58.874 55.000 0.00 0.00 0.00 4.42
2156 7239 1.202615 GGGAACTAGGGATTGCGTACC 60.203 57.143 0.00 0.00 0.00 3.34
2158 7241 0.462789 AACTAGGGATTGCGTACCGG 59.537 55.000 0.00 0.00 35.15 5.28
2159 7242 0.396139 ACTAGGGATTGCGTACCGGA 60.396 55.000 9.46 0.00 35.15 5.14
2160 7243 0.966920 CTAGGGATTGCGTACCGGAT 59.033 55.000 9.46 0.00 35.15 4.18
2162 7245 0.179056 AGGGATTGCGTACCGGATTG 60.179 55.000 9.46 0.00 35.15 2.67
2163 7246 1.164041 GGGATTGCGTACCGGATTGG 61.164 60.000 9.46 0.00 46.41 3.16
2164 7247 1.164041 GGATTGCGTACCGGATTGGG 61.164 60.000 9.46 0.00 44.64 4.12
2165 7248 1.153046 ATTGCGTACCGGATTGGGG 60.153 57.895 9.46 0.00 44.64 4.96
2166 7249 1.628238 ATTGCGTACCGGATTGGGGA 61.628 55.000 9.46 0.00 44.64 4.81
2167 7250 1.628238 TTGCGTACCGGATTGGGGAT 61.628 55.000 9.46 0.00 44.64 3.85
2168 7251 1.147600 GCGTACCGGATTGGGGATT 59.852 57.895 9.46 0.00 44.64 3.01
2170 7253 0.466543 CGTACCGGATTGGGGATTGA 59.533 55.000 9.46 0.00 44.64 2.57
2171 7254 1.540363 CGTACCGGATTGGGGATTGAG 60.540 57.143 9.46 0.00 44.64 3.02
2173 7256 1.887797 ACCGGATTGGGGATTGAGTA 58.112 50.000 9.46 0.00 44.64 2.59
2174 7257 2.201830 ACCGGATTGGGGATTGAGTAA 58.798 47.619 9.46 0.00 44.64 2.24
2176 7259 3.010808 ACCGGATTGGGGATTGAGTAAAA 59.989 43.478 9.46 0.00 44.64 1.52
2177 7260 3.380320 CCGGATTGGGGATTGAGTAAAAC 59.620 47.826 0.00 0.00 0.00 2.43
2178 7261 4.270008 CGGATTGGGGATTGAGTAAAACT 58.730 43.478 0.00 0.00 0.00 2.66
2181 7264 5.714806 GGATTGGGGATTGAGTAAAACTTCA 59.285 40.000 0.00 0.00 0.00 3.02
2182 7265 6.350194 GGATTGGGGATTGAGTAAAACTTCAC 60.350 42.308 0.00 0.00 0.00 3.18
2183 7266 4.069304 TGGGGATTGAGTAAAACTTCACG 58.931 43.478 0.00 0.00 0.00 4.35
2184 7267 3.119955 GGGGATTGAGTAAAACTTCACGC 60.120 47.826 0.00 0.00 0.00 5.34
2185 7268 3.424433 GGGATTGAGTAAAACTTCACGCG 60.424 47.826 3.53 3.53 0.00 6.01
2187 7270 0.505231 TGAGTAAAACTTCACGCGCG 59.495 50.000 30.96 30.96 0.00 6.86
2188 7271 0.505655 GAGTAAAACTTCACGCGCGT 59.494 50.000 32.73 32.73 0.00 6.01
2190 7273 0.449993 GTAAAACTTCACGCGCGTCC 60.450 55.000 35.61 8.31 0.00 4.79
2191 7274 0.598158 TAAAACTTCACGCGCGTCCT 60.598 50.000 35.61 9.61 0.00 3.85
2192 7275 1.828331 AAAACTTCACGCGCGTCCTC 61.828 55.000 35.61 0.00 0.00 3.71
2193 7276 2.964438 AAACTTCACGCGCGTCCTCA 62.964 55.000 35.61 14.66 0.00 3.86
2195 7278 1.226575 CTTCACGCGCGTCCTCATA 60.227 57.895 35.61 13.27 0.00 2.15
2196 7279 0.595053 CTTCACGCGCGTCCTCATAT 60.595 55.000 35.61 5.82 0.00 1.78
2197 7280 0.594028 TTCACGCGCGTCCTCATATC 60.594 55.000 35.61 0.00 0.00 1.63
2198 7281 2.051256 ACGCGCGTCCTCATATCG 60.051 61.111 32.73 0.00 0.00 2.92
2199 7282 3.461982 CGCGCGTCCTCATATCGC 61.462 66.667 24.19 0.00 45.28 4.58
2200 7283 2.049985 GCGCGTCCTCATATCGCT 60.050 61.111 8.43 0.00 46.31 4.93
2201 7284 1.661821 GCGCGTCCTCATATCGCTT 60.662 57.895 8.43 0.00 46.31 4.68
2202 7285 1.609840 GCGCGTCCTCATATCGCTTC 61.610 60.000 8.43 0.00 46.31 3.86
2203 7286 1.330779 CGCGTCCTCATATCGCTTCG 61.331 60.000 0.00 0.00 46.31 3.79
2216 7299 2.668212 CTTCGCGCCTTCCACCAA 60.668 61.111 0.00 0.00 0.00 3.67
2217 7300 2.668212 TTCGCGCCTTCCACCAAG 60.668 61.111 0.00 0.00 0.00 3.61
2223 7306 2.742372 CCTTCCACCAAGCCGACG 60.742 66.667 0.00 0.00 0.00 5.12
2224 7307 2.030562 CTTCCACCAAGCCGACGT 59.969 61.111 0.00 0.00 0.00 4.34
2225 7308 2.280524 TTCCACCAAGCCGACGTG 60.281 61.111 0.00 0.00 0.00 4.49
2235 7318 3.124921 CCGACGTGGCAATGGTCC 61.125 66.667 0.00 0.00 0.00 4.46
2236 7319 2.358125 CGACGTGGCAATGGTCCA 60.358 61.111 0.00 0.00 0.00 4.02
2237 7320 2.390599 CGACGTGGCAATGGTCCAG 61.391 63.158 0.00 0.00 33.63 3.86
2240 7323 2.401766 CGTGGCAATGGTCCAGAGC 61.402 63.158 9.31 9.31 33.63 4.09
2241 7324 2.048603 GTGGCAATGGTCCAGAGCC 61.049 63.158 23.96 23.96 45.41 4.70
2242 7325 2.356278 GGCAATGGTCCAGAGCCA 59.644 61.111 25.16 2.27 44.59 4.75
2243 7326 2.048603 GGCAATGGTCCAGAGCCAC 61.049 63.158 25.16 5.86 44.59 5.01
2244 7327 2.401766 GCAATGGTCCAGAGCCACG 61.402 63.158 7.00 0.00 39.03 4.94
2245 7328 2.045926 AATGGTCCAGAGCCACGC 60.046 61.111 0.00 0.00 39.03 5.34
2246 7329 2.894257 AATGGTCCAGAGCCACGCA 61.894 57.895 0.00 0.00 39.03 5.24
2249 7595 3.426568 GTCCAGAGCCACGCAAGC 61.427 66.667 0.00 0.00 45.62 4.01
2251 7597 2.979676 CCAGAGCCACGCAAGCAA 60.980 61.111 0.00 0.00 45.62 3.91
2253 7599 1.359833 CAGAGCCACGCAAGCAAAA 59.640 52.632 0.00 0.00 45.62 2.44
2260 7606 2.354539 CGCAAGCAAAACCACCGG 60.355 61.111 0.00 0.00 0.00 5.28
2261 7607 2.661537 GCAAGCAAAACCACCGGC 60.662 61.111 0.00 0.00 0.00 6.13
2267 7613 0.375454 GCAAAACCACCGGCAAAAAC 59.625 50.000 0.00 0.00 0.00 2.43
2268 7614 1.010580 CAAAACCACCGGCAAAAACC 58.989 50.000 0.00 0.00 0.00 3.27
2273 7619 1.106944 CCACCGGCAAAAACCACTCT 61.107 55.000 0.00 0.00 0.00 3.24
2274 7620 1.600023 CACCGGCAAAAACCACTCTA 58.400 50.000 0.00 0.00 0.00 2.43
2276 7622 2.031157 CACCGGCAAAAACCACTCTAAG 60.031 50.000 0.00 0.00 0.00 2.18
2277 7623 1.539827 CCGGCAAAAACCACTCTAAGG 59.460 52.381 0.00 0.00 0.00 2.69
2278 7624 1.068541 CGGCAAAAACCACTCTAAGGC 60.069 52.381 0.00 0.00 0.00 4.35
2279 7625 2.239400 GGCAAAAACCACTCTAAGGCT 58.761 47.619 0.00 0.00 0.00 4.58
2280 7626 2.029918 GGCAAAAACCACTCTAAGGCTG 60.030 50.000 0.00 0.00 0.00 4.85
2281 7627 2.029918 GCAAAAACCACTCTAAGGCTGG 60.030 50.000 0.00 0.00 0.00 4.85
2282 7628 3.222603 CAAAAACCACTCTAAGGCTGGT 58.777 45.455 0.00 0.00 40.17 4.00
2283 7629 2.861147 AAACCACTCTAAGGCTGGTC 57.139 50.000 0.00 0.00 37.30 4.02
2285 7631 1.958288 ACCACTCTAAGGCTGGTCAT 58.042 50.000 0.00 0.00 32.51 3.06
2286 7632 3.116096 ACCACTCTAAGGCTGGTCATA 57.884 47.619 0.00 0.00 32.51 2.15
2287 7633 3.034635 ACCACTCTAAGGCTGGTCATAG 58.965 50.000 0.00 0.00 32.51 2.23
2288 7634 3.034635 CCACTCTAAGGCTGGTCATAGT 58.965 50.000 0.00 0.00 0.00 2.12
2289 7635 3.181471 CCACTCTAAGGCTGGTCATAGTG 60.181 52.174 0.00 0.00 34.33 2.74
2290 7636 3.034635 ACTCTAAGGCTGGTCATAGTGG 58.965 50.000 0.00 0.00 0.00 4.00
2291 7637 3.300388 CTCTAAGGCTGGTCATAGTGGA 58.700 50.000 0.00 0.00 0.00 4.02
2293 7639 2.254152 AAGGCTGGTCATAGTGGAGA 57.746 50.000 0.00 0.00 0.00 3.71
2299 7645 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
2301 7647 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
2302 7648 6.041069 GCTGGTCATAGTGGAGAGTAACTTAT 59.959 42.308 0.00 0.00 0.00 1.73
2304 7650 8.461249 TGGTCATAGTGGAGAGTAACTTATAC 57.539 38.462 0.00 0.00 0.00 1.47
2305 7651 7.228108 TGGTCATAGTGGAGAGTAACTTATACG 59.772 40.741 0.00 0.00 0.00 3.06
2306 7652 7.308469 GGTCATAGTGGAGAGTAACTTATACGG 60.308 44.444 0.00 0.00 0.00 4.02
2307 7653 7.443575 GTCATAGTGGAGAGTAACTTATACGGA 59.556 40.741 0.00 0.00 0.00 4.69
2324 7670 3.024547 ACGGAGTACTAGTGTCATGCAT 58.975 45.455 5.39 0.00 41.94 3.96
2325 7671 4.204799 ACGGAGTACTAGTGTCATGCATA 58.795 43.478 5.39 0.00 41.94 3.14
2326 7672 4.827835 ACGGAGTACTAGTGTCATGCATAT 59.172 41.667 5.39 0.00 41.94 1.78
2327 7673 5.157067 CGGAGTACTAGTGTCATGCATATG 58.843 45.833 5.39 0.00 35.57 1.78
2328 7674 5.048713 CGGAGTACTAGTGTCATGCATATGA 60.049 44.000 6.97 0.00 40.92 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.537188 ACCTCTCACAGTAATGGGCG 59.463 55.000 0.00 0.00 0.00 6.13
105 106 5.063944 CGTTGTTGGGTCAATTAGATCTGAG 59.936 44.000 5.18 0.00 0.00 3.35
173 174 0.743688 CAGGATCCTCTCAGTGTCCG 59.256 60.000 12.69 0.00 34.19 4.79
178 179 5.725490 AGGAATATTCAGGATCCTCTCAGT 58.275 41.667 12.69 0.00 37.80 3.41
428 429 0.948678 GTTTACACGGCAAGGAAGCA 59.051 50.000 0.00 0.00 35.83 3.91
534 535 6.638468 GCATATACCATACTTGCTTTGCTTTC 59.362 38.462 0.00 0.00 0.00 2.62
846 847 0.904865 ATCCTGTTGGCGGTCTCTGA 60.905 55.000 0.00 0.00 0.00 3.27
967 969 0.837272 TAGGCCCCAGCTACATTGTC 59.163 55.000 0.00 0.00 39.73 3.18
986 988 4.492494 TCTGCCATGAACACATCTGTAT 57.508 40.909 0.00 0.00 0.00 2.29
1116 1118 1.134670 GCAGAGGAGCCTGACGTATTT 60.135 52.381 0.00 0.00 36.29 1.40
1375 1378 4.201822 GGTTCTTACGTGATCAATCTTGCC 60.202 45.833 0.00 0.00 0.00 4.52
1416 3624 7.701539 TTATCCAGTGGTACTAGTTTCGTTA 57.298 36.000 9.54 0.00 0.00 3.18
1431 3639 8.624776 AGAGTCAAGTTTTTCTTTTATCCAGTG 58.375 33.333 0.00 0.00 33.63 3.66
1532 5944 0.615331 AGGAAGAAGCGATCAAGCCA 59.385 50.000 0.00 0.00 38.01 4.75
1564 5976 7.364522 TCTATTTTCGTGAAGTTTCCATCAG 57.635 36.000 0.00 0.00 0.00 2.90
1599 6011 0.944386 GCGGTCAGTGAACATGTGTT 59.056 50.000 9.27 0.00 41.64 3.32
1640 6052 4.523083 CGGGGAAGAAGAATATGACCAAA 58.477 43.478 0.00 0.00 0.00 3.28
1659 6071 2.524569 AAATGCAAGTTGTTTCCGGG 57.475 45.000 0.00 0.00 0.00 5.73
1662 6074 6.660887 TTCAGAAAAATGCAAGTTGTTTCC 57.339 33.333 4.48 0.00 0.00 3.13
1685 6097 4.060205 GCTGGAATTTGATGCAACAAGTT 58.940 39.130 15.67 15.67 33.64 2.66
1710 6122 5.500645 ACACAAAAGGACAGAAACTTAGC 57.499 39.130 0.00 0.00 0.00 3.09
1722 6134 7.094377 GGCTATTTCATGTTCTACACAAAAGGA 60.094 37.037 0.00 0.00 39.50 3.36
1794 6206 3.153369 TGTTGGTATGGCACTTGATGT 57.847 42.857 0.00 0.00 0.00 3.06
1795 6207 3.067180 GGATGTTGGTATGGCACTTGATG 59.933 47.826 0.00 0.00 0.00 3.07
1796 6208 3.290710 GGATGTTGGTATGGCACTTGAT 58.709 45.455 0.00 0.00 0.00 2.57
1797 6209 2.040947 TGGATGTTGGTATGGCACTTGA 59.959 45.455 0.00 0.00 0.00 3.02
1798 6210 2.445427 TGGATGTTGGTATGGCACTTG 58.555 47.619 0.00 0.00 0.00 3.16
1799 6211 2.897271 TGGATGTTGGTATGGCACTT 57.103 45.000 0.00 0.00 0.00 3.16
1800 6212 3.386932 AATGGATGTTGGTATGGCACT 57.613 42.857 0.00 0.00 0.00 4.40
1801 6213 4.470334 AAAATGGATGTTGGTATGGCAC 57.530 40.909 0.00 0.00 0.00 5.01
1802 6214 4.776837 AGAAAAATGGATGTTGGTATGGCA 59.223 37.500 0.00 0.00 0.00 4.92
1803 6215 5.343307 AGAAAAATGGATGTTGGTATGGC 57.657 39.130 0.00 0.00 0.00 4.40
1804 6216 8.096414 AGAAAAGAAAAATGGATGTTGGTATGG 58.904 33.333 0.00 0.00 0.00 2.74
1806 6218 8.869109 TCAGAAAAGAAAAATGGATGTTGGTAT 58.131 29.630 0.00 0.00 0.00 2.73
1807 6219 8.141268 GTCAGAAAAGAAAAATGGATGTTGGTA 58.859 33.333 0.00 0.00 0.00 3.25
1808 6220 6.986231 GTCAGAAAAGAAAAATGGATGTTGGT 59.014 34.615 0.00 0.00 0.00 3.67
1810 6222 6.917477 TCGTCAGAAAAGAAAAATGGATGTTG 59.083 34.615 0.00 0.00 0.00 3.33
1811 6223 7.038154 TCGTCAGAAAAGAAAAATGGATGTT 57.962 32.000 0.00 0.00 0.00 2.71
1812 6224 6.633500 TCGTCAGAAAAGAAAAATGGATGT 57.367 33.333 0.00 0.00 0.00 3.06
1813 6225 7.096065 GGTTTCGTCAGAAAAGAAAAATGGATG 60.096 37.037 0.00 0.00 46.63 3.51
1815 6227 6.127591 TGGTTTCGTCAGAAAAGAAAAATGGA 60.128 34.615 0.00 0.00 46.63 3.41
1817 6229 6.291796 GCTGGTTTCGTCAGAAAAGAAAAATG 60.292 38.462 0.00 0.00 46.63 2.32
1831 6914 1.464997 GAAGTGGATGCTGGTTTCGTC 59.535 52.381 0.00 0.00 0.00 4.20
1832 6915 1.072331 AGAAGTGGATGCTGGTTTCGT 59.928 47.619 0.00 0.00 0.00 3.85
1834 6917 3.440522 GGTAAGAAGTGGATGCTGGTTTC 59.559 47.826 0.00 0.00 0.00 2.78
1836 6919 2.644798 AGGTAAGAAGTGGATGCTGGTT 59.355 45.455 0.00 0.00 0.00 3.67
1838 6921 2.237143 TCAGGTAAGAAGTGGATGCTGG 59.763 50.000 0.00 0.00 0.00 4.85
1840 6923 3.840666 TCTTCAGGTAAGAAGTGGATGCT 59.159 43.478 0.00 0.00 44.18 3.79
1856 6939 5.545588 TGTTCATCTCTTCCTGTTCTTCAG 58.454 41.667 0.00 0.00 43.27 3.02
1859 6942 6.179906 TCTTGTTCATCTCTTCCTGTTCTT 57.820 37.500 0.00 0.00 0.00 2.52
1861 6944 5.760253 TGTTCTTGTTCATCTCTTCCTGTTC 59.240 40.000 0.00 0.00 0.00 3.18
1862 6945 5.684704 TGTTCTTGTTCATCTCTTCCTGTT 58.315 37.500 0.00 0.00 0.00 3.16
1864 6947 6.814506 ATTGTTCTTGTTCATCTCTTCCTG 57.185 37.500 0.00 0.00 0.00 3.86
1865 6948 7.108847 CCTATTGTTCTTGTTCATCTCTTCCT 58.891 38.462 0.00 0.00 0.00 3.36
1866 6949 6.317391 CCCTATTGTTCTTGTTCATCTCTTCC 59.683 42.308 0.00 0.00 0.00 3.46
1868 6951 6.012508 TCCCCTATTGTTCTTGTTCATCTCTT 60.013 38.462 0.00 0.00 0.00 2.85
1871 6954 5.779241 TCCCCTATTGTTCTTGTTCATCT 57.221 39.130 0.00 0.00 0.00 2.90
1872 6955 5.237344 CGATCCCCTATTGTTCTTGTTCATC 59.763 44.000 0.00 0.00 0.00 2.92
1873 6956 5.126067 CGATCCCCTATTGTTCTTGTTCAT 58.874 41.667 0.00 0.00 0.00 2.57
1874 6957 4.513442 CGATCCCCTATTGTTCTTGTTCA 58.487 43.478 0.00 0.00 0.00 3.18
1875 6958 3.877508 CCGATCCCCTATTGTTCTTGTTC 59.122 47.826 0.00 0.00 0.00 3.18
1876 6959 3.886123 CCGATCCCCTATTGTTCTTGTT 58.114 45.455 0.00 0.00 0.00 2.83
1877 6960 2.421529 GCCGATCCCCTATTGTTCTTGT 60.422 50.000 0.00 0.00 0.00 3.16
1878 6961 2.222027 GCCGATCCCCTATTGTTCTTG 58.778 52.381 0.00 0.00 0.00 3.02
1879 6962 1.202651 CGCCGATCCCCTATTGTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
1880 6963 0.393077 CGCCGATCCCCTATTGTTCT 59.607 55.000 0.00 0.00 0.00 3.01
1882 6965 1.450211 CCGCCGATCCCCTATTGTT 59.550 57.895 0.00 0.00 0.00 2.83
1883 6966 3.148084 CCGCCGATCCCCTATTGT 58.852 61.111 0.00 0.00 0.00 2.71
1884 6967 2.358737 GCCGCCGATCCCCTATTG 60.359 66.667 0.00 0.00 0.00 1.90
1885 6968 3.637273 GGCCGCCGATCCCCTATT 61.637 66.667 0.00 0.00 0.00 1.73
1909 6992 1.000506 TGTTTGACTCGTGGTCTAGCC 59.999 52.381 11.17 0.00 44.74 3.93
1911 6994 2.557056 TCCTGTTTGACTCGTGGTCTAG 59.443 50.000 11.17 0.00 44.74 2.43
1913 6996 1.410004 TCCTGTTTGACTCGTGGTCT 58.590 50.000 11.17 0.00 44.74 3.85
1915 6998 1.485066 AGTTCCTGTTTGACTCGTGGT 59.515 47.619 0.00 0.00 0.00 4.16
1916 6999 2.135933 GAGTTCCTGTTTGACTCGTGG 58.864 52.381 0.00 0.00 31.54 4.94
1917 7000 2.135933 GGAGTTCCTGTTTGACTCGTG 58.864 52.381 0.00 0.00 40.47 4.35
1918 7001 1.760613 TGGAGTTCCTGTTTGACTCGT 59.239 47.619 0.00 0.00 40.47 4.18
1919 7002 2.526304 TGGAGTTCCTGTTTGACTCG 57.474 50.000 0.00 0.00 40.47 4.18
1921 7004 3.199946 TGTCTTGGAGTTCCTGTTTGACT 59.800 43.478 0.00 0.00 36.82 3.41
1922 7005 3.541632 TGTCTTGGAGTTCCTGTTTGAC 58.458 45.455 0.00 0.00 36.82 3.18
1924 7007 3.243201 GCTTGTCTTGGAGTTCCTGTTTG 60.243 47.826 0.00 0.00 36.82 2.93
1925 7008 2.952310 GCTTGTCTTGGAGTTCCTGTTT 59.048 45.455 0.00 0.00 36.82 2.83
1926 7009 2.092429 TGCTTGTCTTGGAGTTCCTGTT 60.092 45.455 0.00 0.00 36.82 3.16
1927 7010 1.490490 TGCTTGTCTTGGAGTTCCTGT 59.510 47.619 0.00 0.00 36.82 4.00
1930 7013 0.877743 GCTGCTTGTCTTGGAGTTCC 59.122 55.000 0.00 0.00 0.00 3.62
1931 7014 0.877743 GGCTGCTTGTCTTGGAGTTC 59.122 55.000 0.00 0.00 0.00 3.01
1933 7016 1.302033 CGGCTGCTTGTCTTGGAGT 60.302 57.895 0.00 0.00 0.00 3.85
1934 7017 2.684843 GCGGCTGCTTGTCTTGGAG 61.685 63.158 11.21 0.00 38.39 3.86
1935 7018 2.669569 GCGGCTGCTTGTCTTGGA 60.670 61.111 11.21 0.00 38.39 3.53
1955 7038 1.579698 CTCGTCATGGCTCAATGGAG 58.420 55.000 0.00 0.00 44.33 3.86
1956 7039 0.178767 CCTCGTCATGGCTCAATGGA 59.821 55.000 0.00 0.00 0.00 3.41
1957 7040 0.816825 CCCTCGTCATGGCTCAATGG 60.817 60.000 0.00 0.00 0.00 3.16
1958 7041 1.442526 GCCCTCGTCATGGCTCAATG 61.443 60.000 0.00 0.00 44.46 2.82
1959 7042 1.153086 GCCCTCGTCATGGCTCAAT 60.153 57.895 0.00 0.00 44.46 2.57
1961 7044 4.147449 CGCCCTCGTCATGGCTCA 62.147 66.667 0.00 0.00 45.71 4.26
1962 7045 4.899239 CCGCCCTCGTCATGGCTC 62.899 72.222 0.00 0.00 45.71 4.70
1965 7048 4.530857 GGACCGCCCTCGTCATGG 62.531 72.222 0.00 0.00 0.00 3.66
1966 7049 3.461773 AGGACCGCCCTCGTCATG 61.462 66.667 0.00 0.00 43.31 3.07
1988 7071 2.515523 CCATTCTCCAGCGCCCTG 60.516 66.667 2.29 0.00 38.85 4.45
1989 7072 3.801997 CCCATTCTCCAGCGCCCT 61.802 66.667 2.29 0.00 0.00 5.19
1990 7073 4.883354 CCCCATTCTCCAGCGCCC 62.883 72.222 2.29 0.00 0.00 6.13
1991 7074 4.883354 CCCCCATTCTCCAGCGCC 62.883 72.222 2.29 0.00 0.00 6.53
1992 7075 3.125376 ATCCCCCATTCTCCAGCGC 62.125 63.158 0.00 0.00 0.00 5.92
1994 7077 1.072159 CGATCCCCCATTCTCCAGC 59.928 63.158 0.00 0.00 0.00 4.85
1995 7078 1.002888 CATCGATCCCCCATTCTCCAG 59.997 57.143 0.00 0.00 0.00 3.86
1996 7079 1.059098 CATCGATCCCCCATTCTCCA 58.941 55.000 0.00 0.00 0.00 3.86
1997 7080 0.326264 CCATCGATCCCCCATTCTCC 59.674 60.000 0.00 0.00 0.00 3.71
1998 7081 1.277557 CTCCATCGATCCCCCATTCTC 59.722 57.143 0.00 0.00 0.00 2.87
1999 7082 1.356124 CTCCATCGATCCCCCATTCT 58.644 55.000 0.00 0.00 0.00 2.40
2001 7084 0.104462 TCCTCCATCGATCCCCCATT 60.104 55.000 0.00 0.00 0.00 3.16
2003 7086 1.152247 CTCCTCCATCGATCCCCCA 60.152 63.158 0.00 0.00 0.00 4.96
2004 7087 1.915769 CCTCCTCCATCGATCCCCC 60.916 68.421 0.00 0.00 0.00 5.40
2005 7088 0.471971 TTCCTCCTCCATCGATCCCC 60.472 60.000 0.00 0.00 0.00 4.81
2006 7089 1.650528 ATTCCTCCTCCATCGATCCC 58.349 55.000 0.00 0.00 0.00 3.85
2007 7090 3.367498 CGTAATTCCTCCTCCATCGATCC 60.367 52.174 0.00 0.00 0.00 3.36
2008 7091 3.256136 ACGTAATTCCTCCTCCATCGATC 59.744 47.826 0.00 0.00 0.00 3.69
2009 7092 3.231818 ACGTAATTCCTCCTCCATCGAT 58.768 45.455 0.00 0.00 0.00 3.59
2010 7093 2.662866 ACGTAATTCCTCCTCCATCGA 58.337 47.619 0.00 0.00 0.00 3.59
2011 7094 3.057456 CCTACGTAATTCCTCCTCCATCG 60.057 52.174 0.00 0.00 0.00 3.84
2012 7095 3.896272 ACCTACGTAATTCCTCCTCCATC 59.104 47.826 0.00 0.00 0.00 3.51
2013 7096 3.641906 CACCTACGTAATTCCTCCTCCAT 59.358 47.826 0.00 0.00 0.00 3.41
2015 7098 2.364647 CCACCTACGTAATTCCTCCTCC 59.635 54.545 0.00 0.00 0.00 4.30
2016 7099 2.364647 CCCACCTACGTAATTCCTCCTC 59.635 54.545 0.00 0.00 0.00 3.71
2017 7100 2.395619 CCCACCTACGTAATTCCTCCT 58.604 52.381 0.00 0.00 0.00 3.69
2018 7101 1.415289 CCCCACCTACGTAATTCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
2019 7102 1.202615 GCCCCACCTACGTAATTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
2020 7103 0.835276 GCCCCACCTACGTAATTCCT 59.165 55.000 0.00 0.00 0.00 3.36
2021 7104 0.531311 CGCCCCACCTACGTAATTCC 60.531 60.000 0.00 0.00 0.00 3.01
2022 7105 0.531311 CCGCCCCACCTACGTAATTC 60.531 60.000 0.00 0.00 0.00 2.17
2023 7106 1.523524 CCGCCCCACCTACGTAATT 59.476 57.895 0.00 0.00 0.00 1.40
2037 7120 4.408821 TGTGTCTCCATGGCCGCC 62.409 66.667 6.96 1.04 0.00 6.13
2038 7121 3.127533 GTGTGTCTCCATGGCCGC 61.128 66.667 6.96 4.70 0.00 6.53
2039 7122 1.300971 CTTGTGTGTCTCCATGGCCG 61.301 60.000 6.96 0.01 0.00 6.13
2041 7124 0.036732 TCCTTGTGTGTCTCCATGGC 59.963 55.000 6.96 0.00 0.00 4.40
2042 7125 2.566833 TTCCTTGTGTGTCTCCATGG 57.433 50.000 4.97 4.97 0.00 3.66
2043 7126 3.743521 TCTTTCCTTGTGTGTCTCCATG 58.256 45.455 0.00 0.00 0.00 3.66
2044 7127 3.648067 TCTCTTTCCTTGTGTGTCTCCAT 59.352 43.478 0.00 0.00 0.00 3.41
2045 7128 3.038280 TCTCTTTCCTTGTGTGTCTCCA 58.962 45.455 0.00 0.00 0.00 3.86
2046 7129 3.753294 TCTCTTTCCTTGTGTGTCTCC 57.247 47.619 0.00 0.00 0.00 3.71
2047 7130 4.950050 TCTTCTCTTTCCTTGTGTGTCTC 58.050 43.478 0.00 0.00 0.00 3.36
2048 7131 5.104735 AGTTCTTCTCTTTCCTTGTGTGTCT 60.105 40.000 0.00 0.00 0.00 3.41
2049 7132 5.119694 AGTTCTTCTCTTTCCTTGTGTGTC 58.880 41.667 0.00 0.00 0.00 3.67
2050 7133 5.104259 AGTTCTTCTCTTTCCTTGTGTGT 57.896 39.130 0.00 0.00 0.00 3.72
2051 7134 6.049149 TGTAGTTCTTCTCTTTCCTTGTGTG 58.951 40.000 0.00 0.00 0.00 3.82
2052 7135 6.098409 TCTGTAGTTCTTCTCTTTCCTTGTGT 59.902 38.462 0.00 0.00 0.00 3.72
2053 7136 6.516718 TCTGTAGTTCTTCTCTTTCCTTGTG 58.483 40.000 0.00 0.00 0.00 3.33
2054 7137 6.732896 TCTGTAGTTCTTCTCTTTCCTTGT 57.267 37.500 0.00 0.00 0.00 3.16
2055 7138 6.986817 TGTTCTGTAGTTCTTCTCTTTCCTTG 59.013 38.462 0.00 0.00 0.00 3.61
2056 7139 7.070074 TCTGTTCTGTAGTTCTTCTCTTTCCTT 59.930 37.037 0.00 0.00 0.00 3.36
2057 7140 6.551601 TCTGTTCTGTAGTTCTTCTCTTTCCT 59.448 38.462 0.00 0.00 0.00 3.36
2058 7141 6.750148 TCTGTTCTGTAGTTCTTCTCTTTCC 58.250 40.000 0.00 0.00 0.00 3.13
2059 7142 6.866248 CCTCTGTTCTGTAGTTCTTCTCTTTC 59.134 42.308 0.00 0.00 0.00 2.62
2061 7144 6.071984 TCCTCTGTTCTGTAGTTCTTCTCTT 58.928 40.000 0.00 0.00 0.00 2.85
2062 7145 5.636123 TCCTCTGTTCTGTAGTTCTTCTCT 58.364 41.667 0.00 0.00 0.00 3.10
2065 7148 4.081917 CCCTCCTCTGTTCTGTAGTTCTTC 60.082 50.000 0.00 0.00 0.00 2.87
2066 7149 3.835395 CCCTCCTCTGTTCTGTAGTTCTT 59.165 47.826 0.00 0.00 0.00 2.52
2068 7151 2.093921 GCCCTCCTCTGTTCTGTAGTTC 60.094 54.545 0.00 0.00 0.00 3.01
2069 7152 1.903183 GCCCTCCTCTGTTCTGTAGTT 59.097 52.381 0.00 0.00 0.00 2.24
2071 7154 0.457851 CGCCCTCCTCTGTTCTGTAG 59.542 60.000 0.00 0.00 0.00 2.74
2072 7155 0.039180 TCGCCCTCCTCTGTTCTGTA 59.961 55.000 0.00 0.00 0.00 2.74
2079 7162 0.754957 ATGAGTCTCGCCCTCCTCTG 60.755 60.000 0.00 0.00 0.00 3.35
2081 7164 0.467290 AGATGAGTCTCGCCCTCCTC 60.467 60.000 0.00 0.00 0.00 3.71
2082 7165 0.754957 CAGATGAGTCTCGCCCTCCT 60.755 60.000 0.00 0.00 30.42 3.69
2084 7167 1.739049 CCAGATGAGTCTCGCCCTC 59.261 63.158 0.00 0.00 30.42 4.30
2086 7169 2.107953 GCCAGATGAGTCTCGCCC 59.892 66.667 0.00 0.00 33.10 6.13
2087 7170 2.279120 CGCCAGATGAGTCTCGCC 60.279 66.667 0.00 0.00 35.45 5.54
2089 7172 2.279120 GCCGCCAGATGAGTCTCG 60.279 66.667 0.00 0.00 30.42 4.04
2090 7173 2.037620 ATGGCCGCCAGATGAGTCTC 62.038 60.000 18.96 0.00 36.75 3.36
2092 7175 1.890979 CATGGCCGCCAGATGAGTC 60.891 63.158 18.96 0.00 36.75 3.36
2094 7177 2.593725 CCATGGCCGCCAGATGAG 60.594 66.667 18.96 5.06 36.75 2.90
2095 7178 4.881440 GCCATGGCCGCCAGATGA 62.881 66.667 27.24 0.00 36.75 2.92
2111 7194 4.388499 TTCTCCCCTGTTCGCCGC 62.388 66.667 0.00 0.00 0.00 6.53
2113 7196 1.838073 TTCCTTCTCCCCTGTTCGCC 61.838 60.000 0.00 0.00 0.00 5.54
2114 7197 0.391793 CTTCCTTCTCCCCTGTTCGC 60.392 60.000 0.00 0.00 0.00 4.70
2117 7200 1.662686 CCTCTTCCTTCTCCCCTGTT 58.337 55.000 0.00 0.00 0.00 3.16
2118 7201 0.252927 CCCTCTTCCTTCTCCCCTGT 60.253 60.000 0.00 0.00 0.00 4.00
2119 7202 0.985490 CCCCTCTTCCTTCTCCCCTG 60.985 65.000 0.00 0.00 0.00 4.45
2120 7203 1.162951 TCCCCTCTTCCTTCTCCCCT 61.163 60.000 0.00 0.00 0.00 4.79
2121 7204 0.253207 TTCCCCTCTTCCTTCTCCCC 60.253 60.000 0.00 0.00 0.00 4.81
2122 7205 0.913205 GTTCCCCTCTTCCTTCTCCC 59.087 60.000 0.00 0.00 0.00 4.30
2124 7207 3.035363 CCTAGTTCCCCTCTTCCTTCTC 58.965 54.545 0.00 0.00 0.00 2.87
2125 7208 2.293251 CCCTAGTTCCCCTCTTCCTTCT 60.293 54.545 0.00 0.00 0.00 2.85
2127 7210 1.728701 TCCCTAGTTCCCCTCTTCCTT 59.271 52.381 0.00 0.00 0.00 3.36
2128 7211 1.405243 TCCCTAGTTCCCCTCTTCCT 58.595 55.000 0.00 0.00 0.00 3.36
2129 7212 2.439880 CAATCCCTAGTTCCCCTCTTCC 59.560 54.545 0.00 0.00 0.00 3.46
2130 7213 2.158740 GCAATCCCTAGTTCCCCTCTTC 60.159 54.545 0.00 0.00 0.00 2.87
2132 7215 1.512735 GCAATCCCTAGTTCCCCTCT 58.487 55.000 0.00 0.00 0.00 3.69
2133 7216 0.106894 CGCAATCCCTAGTTCCCCTC 59.893 60.000 0.00 0.00 0.00 4.30
2134 7217 0.620700 ACGCAATCCCTAGTTCCCCT 60.621 55.000 0.00 0.00 0.00 4.79
2135 7218 1.125633 TACGCAATCCCTAGTTCCCC 58.874 55.000 0.00 0.00 0.00 4.81
2136 7219 1.202615 GGTACGCAATCCCTAGTTCCC 60.203 57.143 0.00 0.00 0.00 3.97
2137 7220 2.235845 GGTACGCAATCCCTAGTTCC 57.764 55.000 0.00 0.00 0.00 3.62
2152 7235 1.489230 ACTCAATCCCCAATCCGGTAC 59.511 52.381 0.00 0.00 0.00 3.34
2153 7236 1.887797 ACTCAATCCCCAATCCGGTA 58.112 50.000 0.00 0.00 0.00 4.02
2154 7237 1.887797 TACTCAATCCCCAATCCGGT 58.112 50.000 0.00 0.00 0.00 5.28
2156 7239 4.270008 AGTTTTACTCAATCCCCAATCCG 58.730 43.478 0.00 0.00 0.00 4.18
2158 7241 6.621613 GTGAAGTTTTACTCAATCCCCAATC 58.378 40.000 0.00 0.00 0.00 2.67
2159 7242 5.183140 CGTGAAGTTTTACTCAATCCCCAAT 59.817 40.000 0.00 0.00 0.00 3.16
2160 7243 4.517453 CGTGAAGTTTTACTCAATCCCCAA 59.483 41.667 0.00 0.00 0.00 4.12
2162 7245 3.119955 GCGTGAAGTTTTACTCAATCCCC 60.120 47.826 0.00 0.00 0.00 4.81
2163 7246 3.424433 CGCGTGAAGTTTTACTCAATCCC 60.424 47.826 0.00 0.00 0.00 3.85
2164 7247 3.732943 CGCGTGAAGTTTTACTCAATCC 58.267 45.455 0.00 0.00 0.00 3.01
2165 7248 3.153735 GCGCGTGAAGTTTTACTCAATC 58.846 45.455 8.43 0.00 0.00 2.67
2166 7249 2.411031 CGCGCGTGAAGTTTTACTCAAT 60.411 45.455 24.19 0.00 0.00 2.57
2167 7250 1.071107 CGCGCGTGAAGTTTTACTCAA 60.071 47.619 24.19 0.00 0.00 3.02
2168 7251 0.505231 CGCGCGTGAAGTTTTACTCA 59.495 50.000 24.19 0.00 0.00 3.41
2170 7253 0.505655 GACGCGCGTGAAGTTTTACT 59.494 50.000 42.90 11.22 0.00 2.24
2171 7254 0.449993 GGACGCGCGTGAAGTTTTAC 60.450 55.000 42.90 21.94 0.00 2.01
2173 7256 1.828331 GAGGACGCGCGTGAAGTTTT 61.828 55.000 42.90 13.73 0.00 2.43
2174 7257 2.279918 AGGACGCGCGTGAAGTTT 60.280 55.556 42.90 14.68 0.00 2.66
2176 7259 1.929806 TATGAGGACGCGCGTGAAGT 61.930 55.000 42.90 23.07 0.00 3.01
2177 7260 0.595053 ATATGAGGACGCGCGTGAAG 60.595 55.000 42.90 9.39 0.00 3.02
2178 7261 0.594028 GATATGAGGACGCGCGTGAA 60.594 55.000 42.90 22.38 0.00 3.18
2181 7264 2.051256 CGATATGAGGACGCGCGT 60.051 61.111 38.52 38.52 0.00 6.01
2182 7265 3.461982 GCGATATGAGGACGCGCG 61.462 66.667 30.96 30.96 42.65 6.86
2199 7282 2.668212 TTGGTGGAAGGCGCGAAG 60.668 61.111 12.10 0.00 0.00 3.79
2200 7283 2.668212 CTTGGTGGAAGGCGCGAA 60.668 61.111 12.10 0.00 0.00 4.70
2206 7289 2.742372 CGTCGGCTTGGTGGAAGG 60.742 66.667 0.00 0.00 31.56 3.46
2208 7291 2.280524 CACGTCGGCTTGGTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
2219 7302 2.358125 TGGACCATTGCCACGTCG 60.358 61.111 0.00 0.00 0.00 5.12
2220 7303 1.003839 TCTGGACCATTGCCACGTC 60.004 57.895 0.00 0.00 0.00 4.34
2223 7306 2.048603 GGCTCTGGACCATTGCCAC 61.049 63.158 24.66 6.29 42.79 5.01
2224 7307 2.356278 GGCTCTGGACCATTGCCA 59.644 61.111 24.66 0.00 42.79 4.92
2225 7308 2.048603 GTGGCTCTGGACCATTGCC 61.049 63.158 23.51 23.51 39.95 4.52
2226 7309 2.401766 CGTGGCTCTGGACCATTGC 61.402 63.158 9.59 9.59 39.95 3.56
2227 7310 2.401766 GCGTGGCTCTGGACCATTG 61.402 63.158 0.00 0.00 39.95 2.82
2228 7311 2.045926 GCGTGGCTCTGGACCATT 60.046 61.111 0.00 0.00 39.95 3.16
2229 7312 2.809861 CTTGCGTGGCTCTGGACCAT 62.810 60.000 0.00 0.00 39.95 3.55
2230 7313 3.535629 CTTGCGTGGCTCTGGACCA 62.536 63.158 0.00 0.00 33.84 4.02
2231 7314 2.743928 CTTGCGTGGCTCTGGACC 60.744 66.667 0.00 0.00 0.00 4.46
2232 7315 3.426568 GCTTGCGTGGCTCTGGAC 61.427 66.667 0.00 0.00 0.00 4.02
2235 7318 0.936297 GTTTTGCTTGCGTGGCTCTG 60.936 55.000 0.00 0.00 0.00 3.35
2236 7319 1.360192 GTTTTGCTTGCGTGGCTCT 59.640 52.632 0.00 0.00 0.00 4.09
2237 7320 1.661509 GGTTTTGCTTGCGTGGCTC 60.662 57.895 0.00 0.00 0.00 4.70
2240 7323 1.591327 GGTGGTTTTGCTTGCGTGG 60.591 57.895 0.00 0.00 0.00 4.94
2241 7324 1.943693 CGGTGGTTTTGCTTGCGTG 60.944 57.895 0.00 0.00 0.00 5.34
2242 7325 2.411290 CGGTGGTTTTGCTTGCGT 59.589 55.556 0.00 0.00 0.00 5.24
2243 7326 2.354539 CCGGTGGTTTTGCTTGCG 60.355 61.111 0.00 0.00 0.00 4.85
2244 7327 2.661537 GCCGGTGGTTTTGCTTGC 60.662 61.111 1.90 0.00 0.00 4.01
2245 7328 0.460987 TTTGCCGGTGGTTTTGCTTG 60.461 50.000 1.90 0.00 0.00 4.01
2246 7329 0.250513 TTTTGCCGGTGGTTTTGCTT 59.749 45.000 1.90 0.00 0.00 3.91
2249 7595 1.010580 GGTTTTTGCCGGTGGTTTTG 58.989 50.000 1.90 0.00 0.00 2.44
2251 7597 0.108089 GTGGTTTTTGCCGGTGGTTT 60.108 50.000 1.90 0.00 0.00 3.27
2253 7599 1.380650 AGTGGTTTTTGCCGGTGGT 60.381 52.632 1.90 0.00 0.00 4.16
2260 7606 2.029918 CCAGCCTTAGAGTGGTTTTTGC 60.030 50.000 0.00 0.00 0.00 3.68
2261 7607 3.222603 ACCAGCCTTAGAGTGGTTTTTG 58.777 45.455 0.42 0.00 42.10 2.44
2267 7613 3.034635 ACTATGACCAGCCTTAGAGTGG 58.965 50.000 0.00 0.00 37.38 4.00
2268 7614 3.181471 CCACTATGACCAGCCTTAGAGTG 60.181 52.174 0.00 0.00 34.25 3.51
2273 7619 3.300388 CTCTCCACTATGACCAGCCTTA 58.700 50.000 0.00 0.00 0.00 2.69
2274 7620 2.114616 CTCTCCACTATGACCAGCCTT 58.885 52.381 0.00 0.00 0.00 4.35
2276 7622 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
2277 7623 3.702045 AGTTACTCTCCACTATGACCAGC 59.298 47.826 0.00 0.00 0.00 4.85
2278 7624 5.923733 AAGTTACTCTCCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
2279 7625 7.228108 CGTATAAGTTACTCTCCACTATGACCA 59.772 40.741 0.00 0.00 0.00 4.02
2280 7626 7.308469 CCGTATAAGTTACTCTCCACTATGACC 60.308 44.444 0.00 0.00 0.00 4.02
2281 7627 7.443575 TCCGTATAAGTTACTCTCCACTATGAC 59.556 40.741 0.00 0.00 0.00 3.06
2282 7628 7.512130 TCCGTATAAGTTACTCTCCACTATGA 58.488 38.462 0.00 0.00 0.00 2.15
2283 7629 7.444792 ACTCCGTATAAGTTACTCTCCACTATG 59.555 40.741 0.00 0.00 0.00 2.23
2285 7631 6.893583 ACTCCGTATAAGTTACTCTCCACTA 58.106 40.000 0.00 0.00 0.00 2.74
2286 7632 5.753716 ACTCCGTATAAGTTACTCTCCACT 58.246 41.667 0.00 0.00 0.00 4.00
2287 7633 6.765512 AGTACTCCGTATAAGTTACTCTCCAC 59.234 42.308 0.00 0.00 0.00 4.02
2288 7634 6.893583 AGTACTCCGTATAAGTTACTCTCCA 58.106 40.000 0.00 0.00 0.00 3.86
2289 7635 8.147704 ACTAGTACTCCGTATAAGTTACTCTCC 58.852 40.741 0.00 0.00 0.00 3.71
2290 7636 8.977505 CACTAGTACTCCGTATAAGTTACTCTC 58.022 40.741 0.00 0.00 0.00 3.20
2291 7637 8.482128 ACACTAGTACTCCGTATAAGTTACTCT 58.518 37.037 0.00 0.00 0.00 3.24
2293 7639 8.260818 TGACACTAGTACTCCGTATAAGTTACT 58.739 37.037 0.00 0.00 0.00 2.24
2299 7645 5.824097 TGCATGACACTAGTACTCCGTATAA 59.176 40.000 0.00 0.00 0.00 0.98
2301 7647 4.204799 TGCATGACACTAGTACTCCGTAT 58.795 43.478 0.00 0.00 0.00 3.06
2302 7648 3.613030 TGCATGACACTAGTACTCCGTA 58.387 45.455 0.00 0.00 0.00 4.02
2304 7650 3.717400 ATGCATGACACTAGTACTCCG 57.283 47.619 0.00 0.00 0.00 4.63
2305 7651 6.332735 TCATATGCATGACACTAGTACTCC 57.667 41.667 10.16 0.00 36.22 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.