Multiple sequence alignment - TraesCS7A01G446900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G446900 chr7A 100.000 4984 0 0 1 4984 641582354 641577371 0.000000e+00 9204.0
1 TraesCS7A01G446900 chr7A 83.012 518 44 11 4275 4791 641949895 641950369 3.560000e-116 429.0
2 TraesCS7A01G446900 chr7A 84.545 330 40 10 3314 3639 641453675 641453353 2.900000e-82 316.0
3 TraesCS7A01G446900 chr7A 82.667 225 21 5 4713 4922 641950417 641950638 3.060000e-42 183.0
4 TraesCS7A01G446900 chr7B 92.132 3190 143 45 630 3763 602937970 602941107 0.000000e+00 4401.0
5 TraesCS7A01G446900 chr7B 85.666 1186 98 35 3762 4922 602940986 602942124 0.000000e+00 1182.0
6 TraesCS7A01G446900 chr7B 83.148 629 63 22 4147 4754 602570901 602570295 7.340000e-148 534.0
7 TraesCS7A01G446900 chr7B 74.793 484 34 37 189 600 602937399 602937866 2.420000e-28 137.0
8 TraesCS7A01G446900 chr7B 96.610 59 2 0 1 59 602937152 602937210 1.140000e-16 99.0
9 TraesCS7A01G446900 chr7D 94.008 2737 79 30 626 3339 556120548 556123222 0.000000e+00 4067.0
10 TraesCS7A01G446900 chr7D 86.381 1050 88 29 3762 4788 556123592 556124609 0.000000e+00 1096.0
11 TraesCS7A01G446900 chr7D 89.791 431 37 5 3340 3765 556123295 556123723 3.390000e-151 545.0
12 TraesCS7A01G446900 chr7D 80.270 816 76 54 4000 4789 555628124 555627368 2.040000e-148 536.0
13 TraesCS7A01G446900 chr7D 81.970 660 57 29 4294 4922 555828459 555827831 2.070000e-138 503.0
14 TraesCS7A01G446900 chr7D 84.404 327 46 4 3314 3639 555829183 555828861 2.900000e-82 316.0
15 TraesCS7A01G446900 chr7D 80.303 330 36 14 3162 3487 555628786 555628482 6.490000e-54 222.0
16 TraesCS7A01G446900 chr7D 93.827 81 1 1 524 600 556120381 556120461 8.760000e-23 119.0
17 TraesCS7A01G446900 chr7D 96.667 60 1 1 1 59 556119734 556119793 1.140000e-16 99.0
18 TraesCS7A01G446900 chr2A 81.664 649 84 23 1052 1684 623564696 623564067 1.600000e-139 507.0
19 TraesCS7A01G446900 chr2D 80.792 682 94 27 1021 1684 480778644 480777982 2.680000e-137 499.0
20 TraesCS7A01G446900 chr1A 81.231 650 94 22 1058 1684 278141927 278142571 2.680000e-137 499.0
21 TraesCS7A01G446900 chr1A 88.158 76 9 0 2554 2629 278144855 278144930 1.910000e-14 91.6
22 TraesCS7A01G446900 chr1D 80.923 650 96 22 1058 1684 217143023 217143667 5.800000e-134 488.0
23 TraesCS7A01G446900 chr1D 88.158 76 9 0 2554 2629 217145985 217146060 1.910000e-14 91.6
24 TraesCS7A01G446900 chr2B 80.704 653 94 22 1045 1684 563924047 563923414 3.490000e-131 479.0
25 TraesCS7A01G446900 chr1B 80.518 657 95 24 1058 1684 310927107 310927760 1.620000e-129 473.0
26 TraesCS7A01G446900 chr1B 86.842 76 10 0 2554 2629 310930097 310930172 8.890000e-13 86.1
27 TraesCS7A01G446900 chr6A 80.534 637 92 26 1064 1684 415907619 415906999 1.260000e-125 460.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G446900 chr7A 641577371 641582354 4983 True 9204.00 9204 100.00000 1 4984 1 chr7A.!!$R2 4983
1 TraesCS7A01G446900 chr7A 641949895 641950638 743 False 306.00 429 82.83950 4275 4922 2 chr7A.!!$F1 647
2 TraesCS7A01G446900 chr7B 602937152 602942124 4972 False 1454.75 4401 87.30025 1 4922 4 chr7B.!!$F1 4921
3 TraesCS7A01G446900 chr7B 602570295 602570901 606 True 534.00 534 83.14800 4147 4754 1 chr7B.!!$R1 607
4 TraesCS7A01G446900 chr7D 556119734 556124609 4875 False 1185.20 4067 92.13480 1 4788 5 chr7D.!!$F1 4787
5 TraesCS7A01G446900 chr7D 555827831 555829183 1352 True 409.50 503 83.18700 3314 4922 2 chr7D.!!$R2 1608
6 TraesCS7A01G446900 chr7D 555627368 555628786 1418 True 379.00 536 80.28650 3162 4789 2 chr7D.!!$R1 1627
7 TraesCS7A01G446900 chr2A 623564067 623564696 629 True 507.00 507 81.66400 1052 1684 1 chr2A.!!$R1 632
8 TraesCS7A01G446900 chr2D 480777982 480778644 662 True 499.00 499 80.79200 1021 1684 1 chr2D.!!$R1 663
9 TraesCS7A01G446900 chr1A 278141927 278144930 3003 False 295.30 499 84.69450 1058 2629 2 chr1A.!!$F1 1571
10 TraesCS7A01G446900 chr1D 217143023 217146060 3037 False 289.80 488 84.54050 1058 2629 2 chr1D.!!$F1 1571
11 TraesCS7A01G446900 chr2B 563923414 563924047 633 True 479.00 479 80.70400 1045 1684 1 chr2B.!!$R1 639
12 TraesCS7A01G446900 chr1B 310927107 310930172 3065 False 279.55 473 83.68000 1058 2629 2 chr1B.!!$F1 1571
13 TraesCS7A01G446900 chr6A 415906999 415907619 620 True 460.00 460 80.53400 1064 1684 1 chr6A.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 340 0.105913 CTCCTCCCCTCTACTCCCAC 60.106 65.000 0.00 0.0 0.00 4.61 F
593 809 0.396974 CCTGAGGGAGACTGGAGAGG 60.397 65.000 0.00 0.0 33.58 3.69 F
720 1010 0.957395 ATGGATGGATGAATCGCGGC 60.957 55.000 6.13 0.0 0.00 6.53 F
934 1266 1.030457 GCCTGATTCTGCTGGGATTG 58.970 55.000 0.00 0.0 0.00 2.67 F
2513 4489 2.741211 GAAACCCACTCGGACGCC 60.741 66.667 0.00 0.0 34.64 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2933 1.298014 GGTGCTGTCCTTGAGAGGG 59.702 63.158 0.00 0.00 43.72 4.30 R
2422 4398 1.355066 GAACGCAGAGCTTCTTCCGG 61.355 60.000 0.00 0.00 0.00 5.14 R
2463 4439 2.742372 CTGGAAACTGGCCGTCGG 60.742 66.667 6.99 6.99 0.00 4.79 R
2757 4736 3.840890 TGTTGTTGTTGTTCTGGTGAC 57.159 42.857 0.00 0.00 0.00 3.67 R
4318 6591 0.815734 CCAGGAATTGCAGCAAGGAG 59.184 55.000 14.47 1.80 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 106 1.300634 GGCTGCCGTTACCCCTTTA 59.699 57.895 1.35 0.00 0.00 1.85
85 111 3.695556 GCTGCCGTTACCCCTTTATTTTA 59.304 43.478 0.00 0.00 0.00 1.52
91 117 7.818446 TGCCGTTACCCCTTTATTTTATTTTTC 59.182 33.333 0.00 0.00 0.00 2.29
94 120 9.577110 CGTTACCCCTTTATTTTATTTTTCCTC 57.423 33.333 0.00 0.00 0.00 3.71
139 192 1.199097 CCCGGCCGTTGCATTATTATC 59.801 52.381 26.12 0.00 40.13 1.75
160 221 1.954927 GCACTCCTATAGTTGGTGCC 58.045 55.000 21.19 10.53 44.87 5.01
161 222 1.209504 GCACTCCTATAGTTGGTGCCA 59.790 52.381 21.19 0.00 44.87 4.92
162 223 2.158755 GCACTCCTATAGTTGGTGCCAT 60.159 50.000 21.19 0.00 44.87 4.40
163 224 3.470709 CACTCCTATAGTTGGTGCCATG 58.529 50.000 0.00 0.00 35.76 3.66
166 227 3.643320 CTCCTATAGTTGGTGCCATGAGA 59.357 47.826 0.00 0.00 0.00 3.27
167 228 4.234550 TCCTATAGTTGGTGCCATGAGAT 58.765 43.478 0.00 0.00 0.00 2.75
168 229 4.040829 TCCTATAGTTGGTGCCATGAGATG 59.959 45.833 0.00 0.00 0.00 2.90
171 232 1.911357 AGTTGGTGCCATGAGATGAGA 59.089 47.619 0.00 0.00 0.00 3.27
172 233 2.093075 AGTTGGTGCCATGAGATGAGAG 60.093 50.000 0.00 0.00 0.00 3.20
173 234 1.576577 TGGTGCCATGAGATGAGAGT 58.423 50.000 0.00 0.00 0.00 3.24
201 285 2.505650 TTCCATGCTTTCCCGATGAA 57.494 45.000 0.00 0.00 0.00 2.57
202 286 2.505650 TCCATGCTTTCCCGATGAAA 57.494 45.000 0.00 0.00 40.64 2.69
243 330 1.869648 AGTGATGGATACTCCTCCCCT 59.130 52.381 0.00 0.00 37.46 4.79
244 331 2.158234 AGTGATGGATACTCCTCCCCTC 60.158 54.545 0.00 0.00 37.46 4.30
245 332 2.156425 TGATGGATACTCCTCCCCTCT 58.844 52.381 0.00 0.00 37.46 3.69
246 333 3.076182 GTGATGGATACTCCTCCCCTCTA 59.924 52.174 0.00 0.00 37.46 2.43
247 334 3.076182 TGATGGATACTCCTCCCCTCTAC 59.924 52.174 0.00 0.00 37.46 2.59
248 335 2.803215 TGGATACTCCTCCCCTCTACT 58.197 52.381 0.00 0.00 37.46 2.57
249 336 2.717515 TGGATACTCCTCCCCTCTACTC 59.282 54.545 0.00 0.00 37.46 2.59
250 337 2.042026 GGATACTCCTCCCCTCTACTCC 59.958 59.091 0.00 0.00 32.53 3.85
251 338 1.532038 TACTCCTCCCCTCTACTCCC 58.468 60.000 0.00 0.00 0.00 4.30
252 339 0.555369 ACTCCTCCCCTCTACTCCCA 60.555 60.000 0.00 0.00 0.00 4.37
253 340 0.105913 CTCCTCCCCTCTACTCCCAC 60.106 65.000 0.00 0.00 0.00 4.61
254 341 1.075151 CCTCCCCTCTACTCCCACC 60.075 68.421 0.00 0.00 0.00 4.61
306 409 4.315941 GCTAGGCCCGCCGCTAAT 62.316 66.667 0.00 0.00 41.95 1.73
324 427 1.111277 ATCCCGTGGGCAAAAATAGC 58.889 50.000 0.00 0.00 34.68 2.97
341 444 4.598894 CCGGATCAGCTGGCGAGG 62.599 72.222 15.13 9.22 35.91 4.63
389 511 2.031870 ACCTTTTTGTGCTGGGAACTC 58.968 47.619 0.00 0.00 0.00 3.01
413 540 3.056107 ACTCAACTGATCCGATCCGAAAA 60.056 43.478 5.91 0.00 0.00 2.29
414 541 3.521560 TCAACTGATCCGATCCGAAAAG 58.478 45.455 5.91 0.00 0.00 2.27
415 542 1.941325 ACTGATCCGATCCGAAAAGC 58.059 50.000 5.91 0.00 0.00 3.51
418 545 2.874701 CTGATCCGATCCGAAAAGCAAT 59.125 45.455 5.91 0.00 0.00 3.56
419 546 4.058124 CTGATCCGATCCGAAAAGCAATA 58.942 43.478 5.91 0.00 0.00 1.90
421 548 3.536956 TCCGATCCGAAAAGCAATAGT 57.463 42.857 0.00 0.00 0.00 2.12
422 549 4.659111 TCCGATCCGAAAAGCAATAGTA 57.341 40.909 0.00 0.00 0.00 1.82
424 551 4.098960 TCCGATCCGAAAAGCAATAGTAGT 59.901 41.667 0.00 0.00 0.00 2.73
425 552 4.809426 CCGATCCGAAAAGCAATAGTAGTT 59.191 41.667 0.00 0.00 0.00 2.24
426 553 5.293569 CCGATCCGAAAAGCAATAGTAGTTT 59.706 40.000 0.00 0.00 0.00 2.66
428 555 7.170998 CCGATCCGAAAAGCAATAGTAGTTTAT 59.829 37.037 0.00 0.00 0.00 1.40
429 556 8.548721 CGATCCGAAAAGCAATAGTAGTTTATT 58.451 33.333 0.00 0.00 0.00 1.40
430 557 9.865484 GATCCGAAAAGCAATAGTAGTTTATTC 57.135 33.333 0.00 0.00 0.00 1.75
431 558 8.780846 TCCGAAAAGCAATAGTAGTTTATTCA 57.219 30.769 0.00 0.00 0.00 2.57
469 628 3.181465 CCGCTCATCACAAAGTATAGGGT 60.181 47.826 0.00 0.00 0.00 4.34
470 629 4.038763 CCGCTCATCACAAAGTATAGGGTA 59.961 45.833 0.00 0.00 0.00 3.69
475 634 7.592885 TCATCACAAAGTATAGGGTAGTACC 57.407 40.000 11.20 11.20 37.60 3.34
492 651 1.300233 CCACTCGCCTAATCCGCTC 60.300 63.158 0.00 0.00 0.00 5.03
503 662 1.996070 AATCCGCTCCCCTTTAGCCC 61.996 60.000 0.00 0.00 36.60 5.19
512 708 3.090532 CTTTAGCCCTCCGCCCCT 61.091 66.667 0.00 0.00 38.78 4.79
513 709 1.764854 CTTTAGCCCTCCGCCCCTA 60.765 63.158 0.00 0.00 38.78 3.53
593 809 0.396974 CCTGAGGGAGACTGGAGAGG 60.397 65.000 0.00 0.00 33.58 3.69
600 816 1.675720 GAGACTGGAGAGGAGGCAGC 61.676 65.000 0.00 0.00 0.00 5.25
601 817 2.686835 ACTGGAGAGGAGGCAGCC 60.687 66.667 1.84 1.84 0.00 4.85
605 821 4.219999 GAGAGGAGGCAGCCGAGC 62.220 72.222 5.55 0.00 0.00 5.03
679 969 2.394563 GCCGCTTTCAGAGGTGAGC 61.395 63.158 0.00 0.00 37.51 4.26
702 992 3.503363 GTCGACGGACGGACGGAT 61.503 66.667 0.00 0.00 42.82 4.18
720 1010 0.957395 ATGGATGGATGAATCGCGGC 60.957 55.000 6.13 0.00 0.00 6.53
747 1060 2.820037 CGGGGCTCGCTTTCCTTC 60.820 66.667 0.00 0.00 0.00 3.46
778 1091 4.863925 GCAGCGCCCGTCTCTCTC 62.864 72.222 2.29 0.00 0.00 3.20
779 1092 3.137459 CAGCGCCCGTCTCTCTCT 61.137 66.667 2.29 0.00 0.00 3.10
793 1106 3.264450 TCTCTCTCTGACCCCAAAATTCC 59.736 47.826 0.00 0.00 0.00 3.01
807 1124 5.335976 CCCAAAATTCCCTCTTTCTTTCTCG 60.336 44.000 0.00 0.00 0.00 4.04
841 1158 2.748843 GCCTTTCTCAGCGAGCTGC 61.749 63.158 19.33 3.04 43.31 5.25
859 1176 1.153208 CCTCTGCTCTGATGGTGGC 60.153 63.158 0.00 0.00 0.00 5.01
860 1177 1.521010 CTCTGCTCTGATGGTGGCG 60.521 63.158 0.00 0.00 0.00 5.69
861 1178 2.513204 CTGCTCTGATGGTGGCGG 60.513 66.667 0.00 0.00 0.00 6.13
889 1215 3.443925 GGCGGGAAAGCTTCTGGC 61.444 66.667 0.00 1.59 42.19 4.85
905 1231 3.066190 GCGGTGGGGGTTAAAGGC 61.066 66.667 0.00 0.00 0.00 4.35
926 1258 2.832201 GGGGCTGCCTGATTCTGC 60.832 66.667 19.68 0.00 0.00 4.26
934 1266 1.030457 GCCTGATTCTGCTGGGATTG 58.970 55.000 0.00 0.00 0.00 2.67
2111 2556 3.055747 CCTTGGAGACTTCTTCAGGTACC 60.056 52.174 2.73 2.73 32.11 3.34
2209 2969 3.777478 CACCACAAGATTGCATTCCATC 58.223 45.455 5.00 0.00 0.00 3.51
2218 3331 6.879276 AGATTGCATTCCATCTATTGACTG 57.121 37.500 5.00 0.00 0.00 3.51
2219 3332 5.768662 AGATTGCATTCCATCTATTGACTGG 59.231 40.000 5.00 0.00 0.00 4.00
2220 3333 3.824133 TGCATTCCATCTATTGACTGGG 58.176 45.455 0.00 0.00 0.00 4.45
2221 3334 3.459227 TGCATTCCATCTATTGACTGGGA 59.541 43.478 0.00 0.00 0.00 4.37
2222 3335 4.105217 TGCATTCCATCTATTGACTGGGAT 59.895 41.667 0.00 1.69 0.00 3.85
2223 3336 5.075493 GCATTCCATCTATTGACTGGGATT 58.925 41.667 6.04 0.00 0.00 3.01
2224 3337 5.048224 GCATTCCATCTATTGACTGGGATTG 60.048 44.000 0.00 0.00 31.75 2.67
2225 3338 5.974156 TTCCATCTATTGACTGGGATTGA 57.026 39.130 6.04 0.00 0.00 2.57
2226 3339 5.296151 TCCATCTATTGACTGGGATTGAC 57.704 43.478 6.04 0.00 0.00 3.18
2227 3340 4.971282 TCCATCTATTGACTGGGATTGACT 59.029 41.667 6.04 0.00 0.00 3.41
2228 3341 5.061853 CCATCTATTGACTGGGATTGACTG 58.938 45.833 0.00 0.00 0.00 3.51
2229 3342 4.760530 TCTATTGACTGGGATTGACTGG 57.239 45.455 0.00 0.00 0.00 4.00
2230 3343 2.814805 ATTGACTGGGATTGACTGGG 57.185 50.000 0.00 0.00 0.00 4.45
2253 3694 7.549842 TGGGAGTAATTGAATTGATTGCATTTG 59.450 33.333 0.00 0.00 0.00 2.32
2513 4489 2.741211 GAAACCCACTCGGACGCC 60.741 66.667 0.00 0.00 34.64 5.68
2757 4736 1.141019 GCATGCTCACCATTGGCAG 59.859 57.895 11.37 0.00 39.38 4.85
2766 4745 0.478072 ACCATTGGCAGTCACCAGAA 59.522 50.000 1.54 0.00 41.82 3.02
2767 4746 0.883833 CCATTGGCAGTCACCAGAAC 59.116 55.000 0.00 0.00 41.82 3.01
2768 4747 1.608055 CATTGGCAGTCACCAGAACA 58.392 50.000 0.00 0.00 41.82 3.18
2769 4748 1.955778 CATTGGCAGTCACCAGAACAA 59.044 47.619 0.00 0.00 41.82 2.83
2770 4749 1.388547 TTGGCAGTCACCAGAACAAC 58.611 50.000 0.00 0.00 41.82 3.32
2771 4750 0.254462 TGGCAGTCACCAGAACAACA 59.746 50.000 0.00 0.00 33.75 3.33
2772 4751 1.340502 TGGCAGTCACCAGAACAACAA 60.341 47.619 0.00 0.00 33.75 2.83
2953 4935 0.539051 ACTCTGATCTTCCAAGCCCG 59.461 55.000 0.00 0.00 0.00 6.13
2968 4950 1.007387 CCCGCAAAGCAACCAGAAC 60.007 57.895 0.00 0.00 0.00 3.01
3103 5085 3.084579 CGCACGCTTGATCTCACC 58.915 61.111 0.00 0.00 0.00 4.02
3112 5094 0.396435 TTGATCTCACCGCTGTTGGT 59.604 50.000 0.00 0.00 45.21 3.67
3115 5097 0.687354 ATCTCACCGCTGTTGGTTCT 59.313 50.000 0.00 0.00 41.38 3.01
3118 5100 2.301870 TCTCACCGCTGTTGGTTCTTAT 59.698 45.455 0.00 0.00 41.38 1.73
3142 5124 2.628657 AGAGTTATATCGCCGGCTTTCT 59.371 45.455 26.68 12.36 0.00 2.52
3154 5136 0.169009 GGCTTTCTGACATGTTCGGC 59.831 55.000 0.00 0.00 0.00 5.54
3372 5428 4.163441 TGGTCACATCCACTCTTCAAAA 57.837 40.909 0.00 0.00 31.96 2.44
3451 5512 4.393680 TGCGTGTTTATTCCACCTAACATC 59.606 41.667 0.00 0.00 33.57 3.06
3452 5513 4.493545 GCGTGTTTATTCCACCTAACATCG 60.494 45.833 0.00 0.00 33.57 3.84
3552 5613 5.008415 TCGGTAGTAGCGGATTTTCTTCTAG 59.992 44.000 20.65 0.00 39.89 2.43
3577 5638 4.804139 ACATCCAAATCGACGTATCTTCAC 59.196 41.667 0.00 0.00 0.00 3.18
3578 5639 4.443913 TCCAAATCGACGTATCTTCACA 57.556 40.909 0.00 0.00 0.00 3.58
3658 5726 1.771565 TACGAGTTCCCACCGATGAT 58.228 50.000 0.00 0.00 0.00 2.45
3695 5813 6.430925 CCTTACTGTTGAAGGAAACATCATCA 59.569 38.462 3.69 0.00 45.52 3.07
3759 5920 8.645814 TTCTTGTTCAGACTAGATACTAACCA 57.354 34.615 0.00 0.00 37.46 3.67
3760 5921 8.645814 TCTTGTTCAGACTAGATACTAACCAA 57.354 34.615 0.00 0.00 33.64 3.67
3761 5922 9.256228 TCTTGTTCAGACTAGATACTAACCAAT 57.744 33.333 0.00 0.00 33.64 3.16
3762 5923 9.877178 CTTGTTCAGACTAGATACTAACCAATT 57.123 33.333 0.00 0.00 31.38 2.32
3777 5938 7.042335 ACTAACCAATTTATGAGTTCTCTCCG 58.958 38.462 1.53 0.00 39.75 4.63
3778 5939 5.677319 ACCAATTTATGAGTTCTCTCCGA 57.323 39.130 1.53 0.00 39.75 4.55
3779 5940 6.240549 ACCAATTTATGAGTTCTCTCCGAT 57.759 37.500 1.53 0.00 39.75 4.18
3780 5941 6.051717 ACCAATTTATGAGTTCTCTCCGATG 58.948 40.000 1.53 0.00 39.75 3.84
3781 5942 6.127054 ACCAATTTATGAGTTCTCTCCGATGA 60.127 38.462 1.53 0.00 39.75 2.92
3782 5943 6.201806 CCAATTTATGAGTTCTCTCCGATGAC 59.798 42.308 1.53 0.00 39.75 3.06
3783 5944 4.920640 TTATGAGTTCTCTCCGATGACC 57.079 45.455 1.53 0.00 39.75 4.02
3784 5945 2.215942 TGAGTTCTCTCCGATGACCA 57.784 50.000 1.53 0.00 39.75 4.02
3785 5946 1.819288 TGAGTTCTCTCCGATGACCAC 59.181 52.381 1.53 0.00 39.75 4.16
3786 5947 2.096248 GAGTTCTCTCCGATGACCACT 58.904 52.381 0.00 0.00 34.87 4.00
3787 5948 3.280295 GAGTTCTCTCCGATGACCACTA 58.720 50.000 0.00 0.00 34.87 2.74
3788 5949 3.695060 GAGTTCTCTCCGATGACCACTAA 59.305 47.826 0.00 0.00 34.87 2.24
3789 5950 4.282496 AGTTCTCTCCGATGACCACTAAT 58.718 43.478 0.00 0.00 0.00 1.73
3790 5951 4.098654 AGTTCTCTCCGATGACCACTAATG 59.901 45.833 0.00 0.00 0.00 1.90
3791 5952 3.632333 TCTCTCCGATGACCACTAATGT 58.368 45.455 0.00 0.00 0.00 2.71
3792 5953 4.023980 TCTCTCCGATGACCACTAATGTT 58.976 43.478 0.00 0.00 0.00 2.71
3793 5954 4.466370 TCTCTCCGATGACCACTAATGTTT 59.534 41.667 0.00 0.00 0.00 2.83
3794 5955 4.755411 TCTCCGATGACCACTAATGTTTC 58.245 43.478 0.00 0.00 0.00 2.78
3795 5956 3.869065 TCCGATGACCACTAATGTTTCC 58.131 45.455 0.00 0.00 0.00 3.13
3796 5957 3.517901 TCCGATGACCACTAATGTTTCCT 59.482 43.478 0.00 0.00 0.00 3.36
3797 5958 4.019681 TCCGATGACCACTAATGTTTCCTT 60.020 41.667 0.00 0.00 0.00 3.36
3798 5959 5.188163 TCCGATGACCACTAATGTTTCCTTA 59.812 40.000 0.00 0.00 0.00 2.69
3799 5960 5.293569 CCGATGACCACTAATGTTTCCTTAC 59.706 44.000 0.00 0.00 0.00 2.34
3800 5961 6.106673 CGATGACCACTAATGTTTCCTTACT 58.893 40.000 0.00 0.00 0.00 2.24
3801 5962 6.036083 CGATGACCACTAATGTTTCCTTACTG 59.964 42.308 0.00 0.00 0.00 2.74
3802 5963 6.182507 TGACCACTAATGTTTCCTTACTGT 57.817 37.500 0.00 0.00 0.00 3.55
3803 5964 6.597562 TGACCACTAATGTTTCCTTACTGTT 58.402 36.000 0.00 0.00 0.00 3.16
3804 5965 6.485313 TGACCACTAATGTTTCCTTACTGTTG 59.515 38.462 0.00 0.00 0.00 3.33
3805 5966 6.597562 ACCACTAATGTTTCCTTACTGTTGA 58.402 36.000 0.00 0.00 0.00 3.18
3806 5967 7.057894 ACCACTAATGTTTCCTTACTGTTGAA 58.942 34.615 0.00 0.00 0.00 2.69
3807 5968 7.558444 ACCACTAATGTTTCCTTACTGTTGAAA 59.442 33.333 0.00 0.00 0.00 2.69
3808 5969 8.076178 CCACTAATGTTTCCTTACTGTTGAAAG 58.924 37.037 0.00 0.00 0.00 2.62
3809 5970 8.836413 CACTAATGTTTCCTTACTGTTGAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
3810 5971 9.403583 ACTAATGTTTCCTTACTGTTGAAAGAA 57.596 29.630 0.00 0.00 0.00 2.52
3812 5973 8.926715 AATGTTTCCTTACTGTTGAAAGAAAC 57.073 30.769 9.19 9.19 0.00 2.78
3813 5974 7.455641 TGTTTCCTTACTGTTGAAAGAAACA 57.544 32.000 12.71 12.71 37.71 2.83
3814 5975 8.062065 TGTTTCCTTACTGTTGAAAGAAACAT 57.938 30.769 12.71 0.00 39.25 2.71
3815 5976 8.188139 TGTTTCCTTACTGTTGAAAGAAACATC 58.812 33.333 12.71 0.00 39.25 3.06
3816 5977 7.873719 TTCCTTACTGTTGAAAGAAACATCA 57.126 32.000 0.00 0.00 39.25 3.07
3817 5978 8.463930 TTCCTTACTGTTGAAAGAAACATCAT 57.536 30.769 0.00 0.00 39.25 2.45
3818 5979 8.099364 TCCTTACTGTTGAAAGAAACATCATC 57.901 34.615 0.00 0.00 39.25 2.92
3819 5980 7.939039 TCCTTACTGTTGAAAGAAACATCATCT 59.061 33.333 0.00 0.00 39.25 2.90
3820 5981 8.571336 CCTTACTGTTGAAAGAAACATCATCTT 58.429 33.333 0.00 0.00 39.25 2.40
3821 5982 9.604626 CTTACTGTTGAAAGAAACATCATCTTC 57.395 33.333 0.00 0.00 39.25 2.87
3822 5983 7.814264 ACTGTTGAAAGAAACATCATCTTCT 57.186 32.000 0.00 0.00 39.25 2.85
3823 5984 7.646314 ACTGTTGAAAGAAACATCATCTTCTG 58.354 34.615 0.00 0.00 39.25 3.02
3824 5985 6.441274 TGTTGAAAGAAACATCATCTTCTGC 58.559 36.000 0.00 0.00 36.14 4.26
3825 5986 6.263842 TGTTGAAAGAAACATCATCTTCTGCT 59.736 34.615 0.00 0.00 36.14 4.24
3826 5987 6.250344 TGAAAGAAACATCATCTTCTGCTG 57.750 37.500 0.00 0.00 36.14 4.41
3827 5988 4.698583 AAGAAACATCATCTTCTGCTGC 57.301 40.909 0.00 0.00 31.61 5.25
3828 5989 3.682696 AGAAACATCATCTTCTGCTGCA 58.317 40.909 0.88 0.88 30.67 4.41
3829 5990 4.077108 AGAAACATCATCTTCTGCTGCAA 58.923 39.130 3.02 0.00 30.67 4.08
3830 5991 4.521639 AGAAACATCATCTTCTGCTGCAAA 59.478 37.500 3.02 0.61 30.67 3.68
3831 5992 4.859304 AACATCATCTTCTGCTGCAAAA 57.141 36.364 3.02 0.00 0.00 2.44
3832 5993 4.436242 ACATCATCTTCTGCTGCAAAAG 57.564 40.909 9.40 9.40 0.00 2.27
3865 6026 6.985188 TGTCTTTCTCCATTTCTTATTCGG 57.015 37.500 0.00 0.00 0.00 4.30
3866 6027 6.707290 TGTCTTTCTCCATTTCTTATTCGGA 58.293 36.000 0.00 0.00 0.00 4.55
3867 6028 6.594159 TGTCTTTCTCCATTTCTTATTCGGAC 59.406 38.462 0.00 0.00 0.00 4.79
3868 6029 5.810587 TCTTTCTCCATTTCTTATTCGGACG 59.189 40.000 0.00 0.00 0.00 4.79
3869 6030 4.994907 TCTCCATTTCTTATTCGGACGA 57.005 40.909 0.00 0.00 0.00 4.20
3870 6031 4.933330 TCTCCATTTCTTATTCGGACGAG 58.067 43.478 0.00 0.00 0.00 4.18
3871 6032 4.643334 TCTCCATTTCTTATTCGGACGAGA 59.357 41.667 0.00 0.00 0.00 4.04
3872 6033 5.302059 TCTCCATTTCTTATTCGGACGAGAT 59.698 40.000 0.00 0.00 0.00 2.75
3873 6034 6.489022 TCTCCATTTCTTATTCGGACGAGATA 59.511 38.462 0.00 0.00 0.00 1.98
3874 6035 6.444633 TCCATTTCTTATTCGGACGAGATAC 58.555 40.000 0.00 0.00 0.00 2.24
3875 6036 6.264744 TCCATTTCTTATTCGGACGAGATACT 59.735 38.462 0.00 0.00 0.00 2.12
3876 6037 6.363626 CCATTTCTTATTCGGACGAGATACTG 59.636 42.308 0.00 0.00 0.00 2.74
3877 6038 6.688637 TTTCTTATTCGGACGAGATACTGA 57.311 37.500 0.00 0.00 0.00 3.41
3878 6039 5.670149 TCTTATTCGGACGAGATACTGAC 57.330 43.478 0.00 0.00 0.00 3.51
3879 6040 4.514441 TCTTATTCGGACGAGATACTGACC 59.486 45.833 0.00 0.00 0.00 4.02
3947 6199 0.029035 CGCGTAGGCTGACGATACTT 59.971 55.000 16.85 0.00 45.82 2.24
4011 6263 2.183679 TGAGGAAGGAAGGAAGCTCTC 58.816 52.381 0.00 0.00 0.00 3.20
4040 6297 1.451927 TACGTACAGCCGGGTCGAT 60.452 57.895 18.61 3.67 0.00 3.59
4091 6351 1.600013 CAGAGAGCGTAGATAGCGTGT 59.400 52.381 0.00 0.00 40.04 4.49
4092 6352 2.801111 CAGAGAGCGTAGATAGCGTGTA 59.199 50.000 0.00 0.00 40.04 2.90
4093 6353 2.801679 AGAGAGCGTAGATAGCGTGTAC 59.198 50.000 0.00 0.00 40.04 2.90
4095 6355 0.585357 AGCGTAGATAGCGTGTACGG 59.415 55.000 18.33 5.84 46.67 4.02
4116 6385 4.496927 GGCAAATTCCGCGGCCTG 62.497 66.667 23.51 15.28 43.09 4.85
4117 6386 4.496927 GCAAATTCCGCGGCCTGG 62.497 66.667 23.51 9.84 0.00 4.45
4118 6387 2.749839 CAAATTCCGCGGCCTGGA 60.750 61.111 23.51 9.40 0.00 3.86
4141 6410 0.877071 ATGCAAGTCAAGAAGCACCG 59.123 50.000 0.00 0.00 40.14 4.94
4171 6440 1.068954 GCAGCTTCAGTTTTTCTCCGG 60.069 52.381 0.00 0.00 0.00 5.14
4222 6492 2.551887 TGATTGTTTGTGTGGTGATCCG 59.448 45.455 0.00 0.00 36.30 4.18
4229 6499 1.134371 TGTGTGGTGATCCGTGAACAA 60.134 47.619 0.00 0.00 36.30 2.83
4237 6507 5.154222 GGTGATCCGTGAACAATTTTCTTC 58.846 41.667 0.00 0.00 0.00 2.87
4239 6509 6.438763 GTGATCCGTGAACAATTTTCTTCTT 58.561 36.000 0.00 0.00 0.00 2.52
4264 6535 3.701532 TTTTTCCGTTGTGTTGGCTAG 57.298 42.857 0.00 0.00 0.00 3.42
4302 6573 2.762535 TGTTAGCAGTAACTCTGGCC 57.237 50.000 0.00 0.00 43.78 5.36
4304 6577 0.535335 TTAGCAGTAACTCTGGCCCG 59.465 55.000 0.00 0.00 43.78 6.13
4346 6620 2.429610 CTGCAATTCCTGGGAAGAATGG 59.570 50.000 8.11 0.00 37.56 3.16
4347 6621 1.758862 GCAATTCCTGGGAAGAATGGG 59.241 52.381 8.11 0.00 37.56 4.00
4349 6623 3.026694 CAATTCCTGGGAAGAATGGGTC 58.973 50.000 8.11 0.00 37.56 4.46
4415 6692 0.817634 TGTCGGACCCAAGCACAAAG 60.818 55.000 5.55 0.00 0.00 2.77
4453 6731 1.818060 TGCTGTTGTTCCATATGGTGC 59.182 47.619 21.28 14.91 36.34 5.01
4472 6750 3.461773 CTGGATCCACGGCGAGGT 61.462 66.667 22.43 10.40 0.00 3.85
4473 6751 3.723235 CTGGATCCACGGCGAGGTG 62.723 68.421 22.43 6.12 37.66 4.00
4482 6760 3.626924 GGCGAGGTGGTGGTGACT 61.627 66.667 0.00 0.00 0.00 3.41
4498 6780 4.394712 CTGGTGGCGGTGGGAGAC 62.395 72.222 0.00 0.00 0.00 3.36
4563 6867 3.487202 CGGCGTGATGTGAACGGG 61.487 66.667 0.00 0.00 41.31 5.28
4607 6911 1.660575 GTCCGTGTCTGTCCGTGTG 60.661 63.158 0.00 0.00 0.00 3.82
4667 6971 2.489275 AACAAAGGCGCCTGTGGTG 61.489 57.895 42.13 31.23 35.65 4.17
4747 7189 3.479269 GACGGCGCTTTCCTGACG 61.479 66.667 6.90 1.41 0.00 4.35
4823 7280 1.615392 GTTCTTTGGCTGCTGTGGAAT 59.385 47.619 0.00 0.00 0.00 3.01
4827 7284 1.236616 TTGGCTGCTGTGGAATGTCG 61.237 55.000 0.00 0.00 0.00 4.35
4868 7326 1.597027 GGGTGTGAGGTGTGAACCG 60.597 63.158 0.00 0.00 34.28 4.44
4881 7339 2.224523 TGTGAACCGCCTCTCTTTTCAT 60.225 45.455 0.00 0.00 0.00 2.57
4916 7376 2.756283 CTCGGCCGTCCCTCTCTT 60.756 66.667 27.15 0.00 0.00 2.85
4922 7382 1.021920 GCCGTCCCTCTCTTCTTTGC 61.022 60.000 0.00 0.00 0.00 3.68
4923 7383 0.610687 CCGTCCCTCTCTTCTTTGCT 59.389 55.000 0.00 0.00 0.00 3.91
4924 7384 1.825474 CCGTCCCTCTCTTCTTTGCTA 59.175 52.381 0.00 0.00 0.00 3.49
4925 7385 2.432510 CCGTCCCTCTCTTCTTTGCTAT 59.567 50.000 0.00 0.00 0.00 2.97
4926 7386 3.118592 CCGTCCCTCTCTTCTTTGCTATT 60.119 47.826 0.00 0.00 0.00 1.73
4927 7387 4.508662 CGTCCCTCTCTTCTTTGCTATTT 58.491 43.478 0.00 0.00 0.00 1.40
4928 7388 4.938226 CGTCCCTCTCTTCTTTGCTATTTT 59.062 41.667 0.00 0.00 0.00 1.82
4929 7389 5.163814 CGTCCCTCTCTTCTTTGCTATTTTG 60.164 44.000 0.00 0.00 0.00 2.44
4930 7390 5.707764 GTCCCTCTCTTCTTTGCTATTTTGT 59.292 40.000 0.00 0.00 0.00 2.83
4931 7391 5.940470 TCCCTCTCTTCTTTGCTATTTTGTC 59.060 40.000 0.00 0.00 0.00 3.18
4932 7392 5.163814 CCCTCTCTTCTTTGCTATTTTGTCG 60.164 44.000 0.00 0.00 0.00 4.35
4933 7393 5.409826 CCTCTCTTCTTTGCTATTTTGTCGT 59.590 40.000 0.00 0.00 0.00 4.34
4934 7394 6.401581 CCTCTCTTCTTTGCTATTTTGTCGTC 60.402 42.308 0.00 0.00 0.00 4.20
4935 7395 6.223852 TCTCTTCTTTGCTATTTTGTCGTCT 58.776 36.000 0.00 0.00 0.00 4.18
4936 7396 6.146184 TCTCTTCTTTGCTATTTTGTCGTCTG 59.854 38.462 0.00 0.00 0.00 3.51
4937 7397 5.179368 TCTTCTTTGCTATTTTGTCGTCTGG 59.821 40.000 0.00 0.00 0.00 3.86
4938 7398 3.188460 TCTTTGCTATTTTGTCGTCTGGC 59.812 43.478 0.00 0.00 0.00 4.85
4939 7399 2.177394 TGCTATTTTGTCGTCTGGCA 57.823 45.000 0.00 0.00 0.00 4.92
4940 7400 1.804151 TGCTATTTTGTCGTCTGGCAC 59.196 47.619 0.00 0.00 0.00 5.01
4941 7401 1.804151 GCTATTTTGTCGTCTGGCACA 59.196 47.619 0.00 0.00 0.00 4.57
4942 7402 2.420022 GCTATTTTGTCGTCTGGCACAT 59.580 45.455 0.00 0.00 38.20 3.21
4943 7403 3.621268 GCTATTTTGTCGTCTGGCACATA 59.379 43.478 0.00 0.00 38.20 2.29
4944 7404 4.094294 GCTATTTTGTCGTCTGGCACATAA 59.906 41.667 0.00 0.00 38.20 1.90
4945 7405 3.889196 TTTTGTCGTCTGGCACATAAC 57.111 42.857 0.00 0.00 38.20 1.89
4946 7406 1.803334 TTGTCGTCTGGCACATAACC 58.197 50.000 0.00 0.00 38.20 2.85
4947 7407 0.973632 TGTCGTCTGGCACATAACCT 59.026 50.000 0.00 0.00 38.20 3.50
4948 7408 1.337728 TGTCGTCTGGCACATAACCTG 60.338 52.381 0.00 0.00 38.20 4.00
4949 7409 0.391130 TCGTCTGGCACATAACCTGC 60.391 55.000 0.00 0.00 38.20 4.85
4950 7410 0.673333 CGTCTGGCACATAACCTGCA 60.673 55.000 0.00 0.00 38.20 4.41
4951 7411 1.533625 GTCTGGCACATAACCTGCAA 58.466 50.000 0.00 0.00 38.20 4.08
4952 7412 1.200020 GTCTGGCACATAACCTGCAAC 59.800 52.381 0.00 0.00 38.20 4.17
4953 7413 1.073763 TCTGGCACATAACCTGCAACT 59.926 47.619 0.00 0.00 38.20 3.16
4954 7414 1.470098 CTGGCACATAACCTGCAACTC 59.530 52.381 0.00 0.00 38.20 3.01
4955 7415 1.073763 TGGCACATAACCTGCAACTCT 59.926 47.619 0.00 0.00 36.27 3.24
4956 7416 2.162681 GGCACATAACCTGCAACTCTT 58.837 47.619 0.00 0.00 36.27 2.85
4957 7417 2.558359 GGCACATAACCTGCAACTCTTT 59.442 45.455 0.00 0.00 36.27 2.52
4958 7418 3.005791 GGCACATAACCTGCAACTCTTTT 59.994 43.478 0.00 0.00 36.27 2.27
4959 7419 4.229876 GCACATAACCTGCAACTCTTTTC 58.770 43.478 0.00 0.00 34.56 2.29
4960 7420 4.022849 GCACATAACCTGCAACTCTTTTCT 60.023 41.667 0.00 0.00 34.56 2.52
4961 7421 5.181245 GCACATAACCTGCAACTCTTTTCTA 59.819 40.000 0.00 0.00 34.56 2.10
4962 7422 6.603095 CACATAACCTGCAACTCTTTTCTAC 58.397 40.000 0.00 0.00 0.00 2.59
4963 7423 5.705905 ACATAACCTGCAACTCTTTTCTACC 59.294 40.000 0.00 0.00 0.00 3.18
4964 7424 3.141767 ACCTGCAACTCTTTTCTACCC 57.858 47.619 0.00 0.00 0.00 3.69
4965 7425 2.711547 ACCTGCAACTCTTTTCTACCCT 59.288 45.455 0.00 0.00 0.00 4.34
4966 7426 3.138468 ACCTGCAACTCTTTTCTACCCTT 59.862 43.478 0.00 0.00 0.00 3.95
4967 7427 3.503748 CCTGCAACTCTTTTCTACCCTTG 59.496 47.826 0.00 0.00 0.00 3.61
4968 7428 2.884639 TGCAACTCTTTTCTACCCTTGC 59.115 45.455 0.00 0.00 34.45 4.01
4969 7429 2.229062 GCAACTCTTTTCTACCCTTGCC 59.771 50.000 0.00 0.00 0.00 4.52
4970 7430 2.474410 ACTCTTTTCTACCCTTGCCG 57.526 50.000 0.00 0.00 0.00 5.69
4971 7431 1.087501 CTCTTTTCTACCCTTGCCGC 58.912 55.000 0.00 0.00 0.00 6.53
4972 7432 0.672401 TCTTTTCTACCCTTGCCGCG 60.672 55.000 0.00 0.00 0.00 6.46
4973 7433 0.953960 CTTTTCTACCCTTGCCGCGT 60.954 55.000 4.92 0.00 0.00 6.01
4974 7434 0.952010 TTTTCTACCCTTGCCGCGTC 60.952 55.000 4.92 0.00 0.00 5.19
4975 7435 3.636313 TTCTACCCTTGCCGCGTCG 62.636 63.158 4.92 0.00 0.00 5.12
4976 7436 4.124351 CTACCCTTGCCGCGTCGA 62.124 66.667 4.92 0.00 0.00 4.20
4977 7437 3.426117 CTACCCTTGCCGCGTCGAT 62.426 63.158 4.92 0.00 0.00 3.59
4978 7438 3.420214 TACCCTTGCCGCGTCGATC 62.420 63.158 4.92 0.00 0.00 3.69
4979 7439 4.812476 CCCTTGCCGCGTCGATCA 62.812 66.667 4.92 0.00 0.00 2.92
4980 7440 3.257561 CCTTGCCGCGTCGATCAG 61.258 66.667 4.92 0.00 0.00 2.90
4981 7441 2.202610 CTTGCCGCGTCGATCAGA 60.203 61.111 4.92 0.00 0.00 3.27
4982 7442 2.506217 TTGCCGCGTCGATCAGAC 60.506 61.111 4.92 7.40 46.16 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 98 8.499288 TGTGAGGAAAAATAAAATAAAGGGGT 57.501 30.769 0.00 0.00 0.00 4.95
73 99 9.785982 TTTGTGAGGAAAAATAAAATAAAGGGG 57.214 29.630 0.00 0.00 0.00 4.79
159 220 7.603404 GGAAATCAAGATACTCTCATCTCATGG 59.397 40.741 0.00 0.00 34.08 3.66
160 221 8.148999 TGGAAATCAAGATACTCTCATCTCATG 58.851 37.037 0.00 0.00 34.08 3.07
161 222 8.260099 TGGAAATCAAGATACTCTCATCTCAT 57.740 34.615 0.00 0.00 34.08 2.90
162 223 7.666063 TGGAAATCAAGATACTCTCATCTCA 57.334 36.000 0.00 0.00 34.08 3.27
163 224 7.118101 GCATGGAAATCAAGATACTCTCATCTC 59.882 40.741 0.00 0.00 34.08 2.75
166 227 6.839454 AGCATGGAAATCAAGATACTCTCAT 58.161 36.000 0.00 0.00 0.00 2.90
167 228 6.244552 AGCATGGAAATCAAGATACTCTCA 57.755 37.500 0.00 0.00 0.00 3.27
168 229 7.255070 GGAAAGCATGGAAATCAAGATACTCTC 60.255 40.741 0.00 0.00 0.00 3.20
171 232 5.595952 GGGAAAGCATGGAAATCAAGATACT 59.404 40.000 0.00 0.00 0.00 2.12
172 233 5.506317 CGGGAAAGCATGGAAATCAAGATAC 60.506 44.000 0.00 0.00 0.00 2.24
173 234 4.580167 CGGGAAAGCATGGAAATCAAGATA 59.420 41.667 0.00 0.00 0.00 1.98
178 262 2.505650 TCGGGAAAGCATGGAAATCA 57.494 45.000 0.00 0.00 0.00 2.57
193 277 2.355756 CACTGCCTGTTATTTCATCGGG 59.644 50.000 0.00 0.00 0.00 5.14
201 285 1.739466 CATCACGCACTGCCTGTTATT 59.261 47.619 0.00 0.00 0.00 1.40
202 286 1.372582 CATCACGCACTGCCTGTTAT 58.627 50.000 0.00 0.00 0.00 1.89
241 328 1.265454 GGTGGTGGTGGGAGTAGAGG 61.265 65.000 0.00 0.00 0.00 3.69
243 330 0.834687 GTGGTGGTGGTGGGAGTAGA 60.835 60.000 0.00 0.00 0.00 2.59
244 331 1.677552 GTGGTGGTGGTGGGAGTAG 59.322 63.158 0.00 0.00 0.00 2.57
245 332 1.844289 GGTGGTGGTGGTGGGAGTA 60.844 63.158 0.00 0.00 0.00 2.59
246 333 3.175710 GGTGGTGGTGGTGGGAGT 61.176 66.667 0.00 0.00 0.00 3.85
247 334 3.174987 TGGTGGTGGTGGTGGGAG 61.175 66.667 0.00 0.00 0.00 4.30
248 335 3.494254 GTGGTGGTGGTGGTGGGA 61.494 66.667 0.00 0.00 0.00 4.37
249 336 4.596585 GGTGGTGGTGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
250 337 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
251 338 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
252 339 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
253 340 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
254 341 1.701031 TAGTGGTGGTGGTGGTGGTG 61.701 60.000 0.00 0.00 0.00 4.17
306 409 0.968393 GGCTATTTTTGCCCACGGGA 60.968 55.000 6.21 0.00 44.32 5.14
324 427 4.598894 CCTCGCCAGCTGATCCGG 62.599 72.222 17.39 6.48 0.00 5.14
339 442 1.229336 ACTAGTCCACTGCCTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
340 443 1.078848 CACTAGTCCACTGCCTGCC 60.079 63.158 0.00 0.00 0.00 4.85
341 444 0.035458 AACACTAGTCCACTGCCTGC 59.965 55.000 0.00 0.00 0.00 4.85
342 445 2.563179 ACTAACACTAGTCCACTGCCTG 59.437 50.000 0.00 0.00 32.61 4.85
389 511 2.159240 TCGGATCGGATCAGTTGAGTTG 60.159 50.000 18.99 0.00 0.00 3.16
424 551 9.624697 GCGGCTTAATGAATGAATATGAATAAA 57.375 29.630 0.00 0.00 0.00 1.40
425 552 9.013229 AGCGGCTTAATGAATGAATATGAATAA 57.987 29.630 0.00 0.00 0.00 1.40
426 553 8.565896 AGCGGCTTAATGAATGAATATGAATA 57.434 30.769 0.00 0.00 0.00 1.75
428 555 6.486320 TGAGCGGCTTAATGAATGAATATGAA 59.514 34.615 2.97 0.00 0.00 2.57
429 556 5.997129 TGAGCGGCTTAATGAATGAATATGA 59.003 36.000 2.97 0.00 0.00 2.15
430 557 6.245115 TGAGCGGCTTAATGAATGAATATG 57.755 37.500 2.97 0.00 0.00 1.78
431 558 6.656270 TGATGAGCGGCTTAATGAATGAATAT 59.344 34.615 2.97 0.00 0.00 1.28
469 628 2.224606 CGGATTAGGCGAGTGGTACTA 58.775 52.381 0.00 0.00 0.00 1.82
470 629 1.030457 CGGATTAGGCGAGTGGTACT 58.970 55.000 0.00 0.00 0.00 2.73
475 634 1.300233 GGAGCGGATTAGGCGAGTG 60.300 63.158 0.00 0.00 35.00 3.51
492 651 4.191015 GGCGGAGGGCTAAAGGGG 62.191 72.222 0.00 0.00 42.94 4.79
503 662 1.900486 CTAAATAGGGTAGGGGCGGAG 59.100 57.143 0.00 0.00 0.00 4.63
512 708 0.390124 CACGCGGGCTAAATAGGGTA 59.610 55.000 12.47 0.00 0.00 3.69
513 709 1.145377 CACGCGGGCTAAATAGGGT 59.855 57.895 12.47 0.00 0.00 4.34
608 824 3.112709 GAAGCGGTCCGTCTGTGC 61.113 66.667 13.94 0.00 0.00 4.57
692 982 0.319900 CATCCATCCATCCGTCCGTC 60.320 60.000 0.00 0.00 0.00 4.79
693 983 0.759060 TCATCCATCCATCCGTCCGT 60.759 55.000 0.00 0.00 0.00 4.69
694 984 0.392706 TTCATCCATCCATCCGTCCG 59.607 55.000 0.00 0.00 0.00 4.79
695 985 2.704572 GATTCATCCATCCATCCGTCC 58.295 52.381 0.00 0.00 0.00 4.79
702 992 1.597854 GCCGCGATTCATCCATCCA 60.598 57.895 8.23 0.00 0.00 3.41
747 1060 2.694760 GCTGCCGCAGAGGAAAAGG 61.695 63.158 24.80 0.00 45.00 3.11
776 1089 2.310052 AGAGGGAATTTTGGGGTCAGAG 59.690 50.000 0.00 0.00 0.00 3.35
777 1090 2.358258 AGAGGGAATTTTGGGGTCAGA 58.642 47.619 0.00 0.00 0.00 3.27
778 1091 2.907458 AGAGGGAATTTTGGGGTCAG 57.093 50.000 0.00 0.00 0.00 3.51
779 1092 3.142028 AGAAAGAGGGAATTTTGGGGTCA 59.858 43.478 0.00 0.00 0.00 4.02
793 1106 1.801178 GGCACACGAGAAAGAAAGAGG 59.199 52.381 0.00 0.00 0.00 3.69
841 1158 1.153208 GCCACCATCAGAGCAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
877 1203 2.335712 CCCACCGCCAGAAGCTTTC 61.336 63.158 0.00 0.00 40.39 2.62
889 1215 2.748647 CGCCTTTAACCCCCACCG 60.749 66.667 0.00 0.00 0.00 4.94
919 1251 1.064654 GCGAACAATCCCAGCAGAATC 59.935 52.381 0.00 0.00 0.00 2.52
926 1258 3.406682 GCAAAGCGAACAATCCCAG 57.593 52.632 0.00 0.00 0.00 4.45
974 1306 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1352 1767 4.101448 CGGGCTTGTCCTCCTGGG 62.101 72.222 0.00 0.00 34.39 4.45
1353 1768 4.785453 GCGGGCTTGTCCTCCTGG 62.785 72.222 0.00 0.00 34.39 4.45
1749 2179 1.912043 CTGAGGAACATGGAGAACCCT 59.088 52.381 0.00 0.00 35.38 4.34
1783 2213 4.481112 CATCTTGTTGCCGCCGCC 62.481 66.667 0.00 0.00 0.00 6.13
1784 2214 2.764314 ATCATCTTGTTGCCGCCGC 61.764 57.895 0.00 0.00 0.00 6.53
2111 2556 2.113807 TGATGGAGGAGTGGAGATGTG 58.886 52.381 0.00 0.00 0.00 3.21
2173 2933 1.298014 GGTGCTGTCCTTGAGAGGG 59.702 63.158 0.00 0.00 43.72 4.30
2209 2969 3.455910 TCCCAGTCAATCCCAGTCAATAG 59.544 47.826 0.00 0.00 0.00 1.73
2218 3331 4.503714 TCAATTACTCCCAGTCAATCCC 57.496 45.455 0.00 0.00 0.00 3.85
2219 3332 6.603201 TCAATTCAATTACTCCCAGTCAATCC 59.397 38.462 0.00 0.00 0.00 3.01
2220 3333 7.630242 TCAATTCAATTACTCCCAGTCAATC 57.370 36.000 0.00 0.00 0.00 2.67
2221 3334 8.472413 CAATCAATTCAATTACTCCCAGTCAAT 58.528 33.333 0.00 0.00 0.00 2.57
2222 3335 7.577426 GCAATCAATTCAATTACTCCCAGTCAA 60.577 37.037 0.00 0.00 0.00 3.18
2223 3336 6.127647 GCAATCAATTCAATTACTCCCAGTCA 60.128 38.462 0.00 0.00 0.00 3.41
2224 3337 6.127647 TGCAATCAATTCAATTACTCCCAGTC 60.128 38.462 0.00 0.00 0.00 3.51
2225 3338 5.716228 TGCAATCAATTCAATTACTCCCAGT 59.284 36.000 0.00 0.00 0.00 4.00
2226 3339 6.211587 TGCAATCAATTCAATTACTCCCAG 57.788 37.500 0.00 0.00 0.00 4.45
2227 3340 6.795144 ATGCAATCAATTCAATTACTCCCA 57.205 33.333 0.00 0.00 0.00 4.37
2228 3341 7.765360 TCAAATGCAATCAATTCAATTACTCCC 59.235 33.333 0.00 0.00 0.00 4.30
2229 3342 8.598075 GTCAAATGCAATCAATTCAATTACTCC 58.402 33.333 0.00 0.00 0.00 3.85
2230 3343 9.362539 AGTCAAATGCAATCAATTCAATTACTC 57.637 29.630 0.00 0.00 0.00 2.59
2253 3694 6.675987 AGAATTCTTCAGCATTTTGACAGTC 58.324 36.000 0.88 0.00 0.00 3.51
2282 3723 3.329520 ACAAGGCCATAGTACCAAAGACA 59.670 43.478 5.01 0.00 0.00 3.41
2283 3724 3.689649 CACAAGGCCATAGTACCAAAGAC 59.310 47.826 5.01 0.00 0.00 3.01
2284 3725 3.872240 GCACAAGGCCATAGTACCAAAGA 60.872 47.826 5.01 0.00 36.11 2.52
2285 3726 2.423538 GCACAAGGCCATAGTACCAAAG 59.576 50.000 5.01 0.00 36.11 2.77
2286 3727 2.041081 AGCACAAGGCCATAGTACCAAA 59.959 45.455 5.01 0.00 46.50 3.28
2422 4398 1.355066 GAACGCAGAGCTTCTTCCGG 61.355 60.000 0.00 0.00 0.00 5.14
2463 4439 2.742372 CTGGAAACTGGCCGTCGG 60.742 66.667 6.99 6.99 0.00 4.79
2479 4455 4.096003 CCGTGGAACATCGGGGCT 62.096 66.667 0.00 0.00 44.74 5.19
2757 4736 3.840890 TGTTGTTGTTGTTCTGGTGAC 57.159 42.857 0.00 0.00 0.00 3.67
2766 4745 5.048083 ACATCTGACTTGTTGTTGTTGTTGT 60.048 36.000 0.00 0.00 0.00 3.32
2767 4746 5.401550 ACATCTGACTTGTTGTTGTTGTTG 58.598 37.500 0.00 0.00 0.00 3.33
2768 4747 5.182950 TGACATCTGACTTGTTGTTGTTGTT 59.817 36.000 0.00 0.00 0.00 2.83
2769 4748 4.699735 TGACATCTGACTTGTTGTTGTTGT 59.300 37.500 0.00 0.00 0.00 3.32
2770 4749 5.233957 TGACATCTGACTTGTTGTTGTTG 57.766 39.130 0.00 0.00 0.00 3.33
2771 4750 5.647658 TCTTGACATCTGACTTGTTGTTGTT 59.352 36.000 0.00 0.00 0.00 2.83
2772 4751 5.185454 TCTTGACATCTGACTTGTTGTTGT 58.815 37.500 0.00 0.00 0.00 3.32
2953 4935 1.661509 GCCGTTCTGGTTGCTTTGC 60.662 57.895 0.00 0.00 41.21 3.68
2968 4950 1.719780 GACAAGTTCTTCGTAGTGCCG 59.280 52.381 0.00 0.00 0.00 5.69
3103 5085 3.997021 ACTCTTCATAAGAACCAACAGCG 59.003 43.478 0.00 0.00 37.02 5.18
3112 5094 6.387465 CCGGCGATATAACTCTTCATAAGAA 58.613 40.000 9.30 0.00 37.02 2.52
3115 5097 4.219944 AGCCGGCGATATAACTCTTCATAA 59.780 41.667 23.20 0.00 0.00 1.90
3118 5100 1.961394 AGCCGGCGATATAACTCTTCA 59.039 47.619 23.20 0.00 0.00 3.02
3154 5136 1.167851 TCAGCTCGGCTTTTTCCATG 58.832 50.000 0.00 0.00 36.40 3.66
3263 5245 7.047891 CCTAATGCCTGAACAGAAACATAGTA 58.952 38.462 3.19 0.00 0.00 1.82
3264 5246 5.882557 CCTAATGCCTGAACAGAAACATAGT 59.117 40.000 3.19 0.00 0.00 2.12
3265 5247 5.882557 ACCTAATGCCTGAACAGAAACATAG 59.117 40.000 3.19 0.65 0.00 2.23
3372 5428 7.054751 GGAATATTAGGAAACTGCCACTTACT 58.945 38.462 0.00 0.00 43.88 2.24
3420 5481 3.252215 TGGAATAAACACGCAAACTGGAG 59.748 43.478 0.00 0.00 0.00 3.86
3431 5492 4.393680 TGCGATGTTAGGTGGAATAAACAC 59.606 41.667 0.00 0.00 34.89 3.32
3451 5512 1.511850 TTGAGGTCAACAGATGTGCG 58.488 50.000 0.00 0.00 0.00 5.34
3530 5591 6.146601 ACTAGAAGAAAATCCGCTACTACC 57.853 41.667 0.00 0.00 0.00 3.18
3552 5613 5.975344 TGAAGATACGTCGATTTGGATGTAC 59.025 40.000 0.00 0.00 40.24 2.90
3658 5726 7.444183 CCTTCAACAGTAAGGAAACATTAGTGA 59.556 37.037 14.76 0.00 45.41 3.41
3759 5920 6.127054 TGGTCATCGGAGAGAACTCATAAATT 60.127 38.462 4.64 0.00 43.63 1.82
3760 5921 5.363868 TGGTCATCGGAGAGAACTCATAAAT 59.636 40.000 4.64 0.00 43.63 1.40
3761 5922 4.709886 TGGTCATCGGAGAGAACTCATAAA 59.290 41.667 4.64 0.00 43.63 1.40
3762 5923 4.098044 GTGGTCATCGGAGAGAACTCATAA 59.902 45.833 4.64 0.00 43.63 1.90
3763 5924 3.632604 GTGGTCATCGGAGAGAACTCATA 59.367 47.826 4.64 0.00 43.63 2.15
3764 5925 2.428890 GTGGTCATCGGAGAGAACTCAT 59.571 50.000 4.64 0.00 43.63 2.90
3765 5926 1.819288 GTGGTCATCGGAGAGAACTCA 59.181 52.381 4.64 0.00 43.63 3.41
3766 5927 2.096248 AGTGGTCATCGGAGAGAACTC 58.904 52.381 0.00 0.00 43.63 3.01
3767 5928 2.223803 AGTGGTCATCGGAGAGAACT 57.776 50.000 0.87 0.00 43.63 3.01
3768 5929 4.142138 ACATTAGTGGTCATCGGAGAGAAC 60.142 45.833 0.00 0.00 43.63 3.01
3769 5930 4.023980 ACATTAGTGGTCATCGGAGAGAA 58.976 43.478 0.00 0.00 43.63 2.87
3770 5931 3.632333 ACATTAGTGGTCATCGGAGAGA 58.368 45.455 0.00 0.00 43.63 3.10
3772 5933 4.382685 GGAAACATTAGTGGTCATCGGAGA 60.383 45.833 0.00 0.00 45.75 3.71
3773 5934 3.871594 GGAAACATTAGTGGTCATCGGAG 59.128 47.826 0.00 0.00 0.00 4.63
3774 5935 3.517901 AGGAAACATTAGTGGTCATCGGA 59.482 43.478 0.00 0.00 0.00 4.55
3775 5936 3.873910 AGGAAACATTAGTGGTCATCGG 58.126 45.455 0.00 0.00 0.00 4.18
3776 5937 6.036083 CAGTAAGGAAACATTAGTGGTCATCG 59.964 42.308 0.00 0.00 32.33 3.84
3777 5938 6.879458 ACAGTAAGGAAACATTAGTGGTCATC 59.121 38.462 13.01 0.00 37.71 2.92
3778 5939 6.779860 ACAGTAAGGAAACATTAGTGGTCAT 58.220 36.000 13.01 0.00 37.71 3.06
3779 5940 6.182507 ACAGTAAGGAAACATTAGTGGTCA 57.817 37.500 13.01 0.00 37.71 4.02
3780 5941 6.708949 TCAACAGTAAGGAAACATTAGTGGTC 59.291 38.462 13.01 0.00 37.71 4.02
3781 5942 6.597562 TCAACAGTAAGGAAACATTAGTGGT 58.402 36.000 13.01 6.02 37.71 4.16
3782 5943 7.504924 TTCAACAGTAAGGAAACATTAGTGG 57.495 36.000 13.01 0.89 37.71 4.00
3783 5944 8.836413 TCTTTCAACAGTAAGGAAACATTAGTG 58.164 33.333 8.69 8.69 38.80 2.74
3784 5945 8.974060 TCTTTCAACAGTAAGGAAACATTAGT 57.026 30.769 0.00 0.00 0.00 2.24
3787 5948 8.926715 GTTTCTTTCAACAGTAAGGAAACATT 57.073 30.769 14.53 0.00 45.19 2.71
3790 5951 8.188139 TGATGTTTCTTTCAACAGTAAGGAAAC 58.812 33.333 13.29 13.29 45.65 2.78
3791 5952 8.287439 TGATGTTTCTTTCAACAGTAAGGAAA 57.713 30.769 0.00 0.00 40.01 3.13
3792 5953 7.873719 TGATGTTTCTTTCAACAGTAAGGAA 57.126 32.000 0.00 0.00 40.01 3.36
3793 5954 7.939039 AGATGATGTTTCTTTCAACAGTAAGGA 59.061 33.333 0.00 0.00 40.01 3.36
3794 5955 8.103948 AGATGATGTTTCTTTCAACAGTAAGG 57.896 34.615 0.00 0.00 40.01 2.69
3795 5956 9.604626 GAAGATGATGTTTCTTTCAACAGTAAG 57.395 33.333 0.00 0.00 40.01 2.34
3796 5957 9.342308 AGAAGATGATGTTTCTTTCAACAGTAA 57.658 29.630 0.00 0.00 40.01 2.24
3797 5958 8.777413 CAGAAGATGATGTTTCTTTCAACAGTA 58.223 33.333 0.00 0.00 40.01 2.74
3798 5959 7.646314 CAGAAGATGATGTTTCTTTCAACAGT 58.354 34.615 0.00 0.00 40.01 3.55
3799 5960 6.581542 GCAGAAGATGATGTTTCTTTCAACAG 59.418 38.462 0.00 0.00 40.01 3.16
3800 5961 6.263842 AGCAGAAGATGATGTTTCTTTCAACA 59.736 34.615 0.00 0.00 40.92 3.33
3801 5962 6.581542 CAGCAGAAGATGATGTTTCTTTCAAC 59.418 38.462 0.00 0.00 40.53 3.18
3802 5963 6.675026 CAGCAGAAGATGATGTTTCTTTCAA 58.325 36.000 0.00 0.00 40.53 2.69
3803 5964 6.250344 CAGCAGAAGATGATGTTTCTTTCA 57.750 37.500 0.00 0.00 40.53 2.69
3839 6000 9.109393 CCGAATAAGAAATGGAGAAAGACATAA 57.891 33.333 0.00 0.00 0.00 1.90
3840 6001 8.482943 TCCGAATAAGAAATGGAGAAAGACATA 58.517 33.333 0.00 0.00 0.00 2.29
3841 6002 7.281100 GTCCGAATAAGAAATGGAGAAAGACAT 59.719 37.037 0.00 0.00 0.00 3.06
3842 6003 6.594159 GTCCGAATAAGAAATGGAGAAAGACA 59.406 38.462 0.00 0.00 0.00 3.41
3843 6004 6.237861 CGTCCGAATAAGAAATGGAGAAAGAC 60.238 42.308 0.00 0.00 0.00 3.01
3844 6005 5.810587 CGTCCGAATAAGAAATGGAGAAAGA 59.189 40.000 0.00 0.00 0.00 2.52
3845 6006 5.810587 TCGTCCGAATAAGAAATGGAGAAAG 59.189 40.000 0.00 0.00 0.00 2.62
3846 6007 5.726397 TCGTCCGAATAAGAAATGGAGAAA 58.274 37.500 0.00 0.00 0.00 2.52
3847 6008 5.126545 TCTCGTCCGAATAAGAAATGGAGAA 59.873 40.000 0.00 0.00 0.00 2.87
3848 6009 4.643334 TCTCGTCCGAATAAGAAATGGAGA 59.357 41.667 0.00 0.00 0.00 3.71
3849 6010 4.933330 TCTCGTCCGAATAAGAAATGGAG 58.067 43.478 0.00 0.00 0.00 3.86
3850 6011 4.994907 TCTCGTCCGAATAAGAAATGGA 57.005 40.909 0.00 0.00 0.00 3.41
3851 6012 6.363626 CAGTATCTCGTCCGAATAAGAAATGG 59.636 42.308 0.00 0.00 0.00 3.16
3852 6013 7.113684 GTCAGTATCTCGTCCGAATAAGAAATG 59.886 40.741 0.00 0.00 0.00 2.32
3853 6014 7.140048 GTCAGTATCTCGTCCGAATAAGAAAT 58.860 38.462 0.00 0.00 0.00 2.17
3854 6015 6.459298 GGTCAGTATCTCGTCCGAATAAGAAA 60.459 42.308 0.00 0.00 0.00 2.52
3855 6016 5.008415 GGTCAGTATCTCGTCCGAATAAGAA 59.992 44.000 0.00 0.00 0.00 2.52
3856 6017 4.514441 GGTCAGTATCTCGTCCGAATAAGA 59.486 45.833 0.00 0.00 0.00 2.10
3857 6018 4.515944 AGGTCAGTATCTCGTCCGAATAAG 59.484 45.833 0.00 0.00 0.00 1.73
3858 6019 4.458397 AGGTCAGTATCTCGTCCGAATAA 58.542 43.478 0.00 0.00 0.00 1.40
3859 6020 4.082665 AGGTCAGTATCTCGTCCGAATA 57.917 45.455 0.00 0.00 0.00 1.75
3860 6021 2.933573 AGGTCAGTATCTCGTCCGAAT 58.066 47.619 0.00 0.00 0.00 3.34
3861 6022 2.414994 AGGTCAGTATCTCGTCCGAA 57.585 50.000 0.00 0.00 0.00 4.30
3862 6023 3.766068 ATAGGTCAGTATCTCGTCCGA 57.234 47.619 0.00 0.00 0.00 4.55
3863 6024 4.832590 AAATAGGTCAGTATCTCGTCCG 57.167 45.455 0.00 0.00 0.00 4.79
3864 6025 5.241064 TGCTAAATAGGTCAGTATCTCGTCC 59.759 44.000 0.00 0.00 0.00 4.79
3865 6026 6.315091 TGCTAAATAGGTCAGTATCTCGTC 57.685 41.667 0.00 0.00 0.00 4.20
3866 6027 6.710597 TTGCTAAATAGGTCAGTATCTCGT 57.289 37.500 0.00 0.00 0.00 4.18
3867 6028 7.203910 AGTTTGCTAAATAGGTCAGTATCTCG 58.796 38.462 0.00 0.00 0.00 4.04
3868 6029 8.950208 AAGTTTGCTAAATAGGTCAGTATCTC 57.050 34.615 0.00 0.00 0.00 2.75
3869 6030 9.167311 CAAAGTTTGCTAAATAGGTCAGTATCT 57.833 33.333 1.96 0.00 0.00 1.98
3911 6073 2.426183 CGCCGTCTTCGTGAAGTCG 61.426 63.158 18.07 18.07 45.02 4.18
3941 6193 1.596464 CCGCTCGTGTCCGTAAGTATC 60.596 57.143 0.00 0.00 35.01 2.24
3986 6238 1.492599 CTTCCTTCCTTCCTCATCCCC 59.507 57.143 0.00 0.00 0.00 4.81
3989 6241 2.771372 AGAGCTTCCTTCCTTCCTCATC 59.229 50.000 0.00 0.00 0.00 2.92
4011 6263 1.614385 CTGTACGTACAAGTGGCGAG 58.386 55.000 27.16 10.86 35.50 5.03
4066 6326 3.363575 CGCTATCTACGCTCTCTGAGAAC 60.364 52.174 8.95 3.30 0.00 3.01
4091 6351 2.438795 GGAATTTGCCGCCCCGTA 60.439 61.111 0.00 0.00 0.00 4.02
4111 6380 1.076485 ACTTGCATCCATCCAGGCC 60.076 57.895 0.00 0.00 37.29 5.19
4115 6384 3.349927 CTTCTTGACTTGCATCCATCCA 58.650 45.455 0.00 0.00 0.00 3.41
4116 6385 2.098770 GCTTCTTGACTTGCATCCATCC 59.901 50.000 0.00 0.00 0.00 3.51
4117 6386 2.751259 TGCTTCTTGACTTGCATCCATC 59.249 45.455 0.00 0.00 0.00 3.51
4118 6387 2.490903 GTGCTTCTTGACTTGCATCCAT 59.509 45.455 0.00 0.00 37.76 3.41
4171 6440 5.546526 CCATTCTGGGAGCTCTCTAATAAC 58.453 45.833 16.21 0.00 32.67 1.89
4249 6520 1.270412 TGGTACTAGCCAACACAACGG 60.270 52.381 0.00 0.00 35.25 4.44
4302 6573 4.569180 AGCCGCCATGGATTCCGG 62.569 66.667 18.40 19.71 42.00 5.14
4304 6577 2.595754 GGAGCCGCCATGGATTCC 60.596 66.667 18.40 11.93 42.00 3.01
4318 6591 0.815734 CCAGGAATTGCAGCAAGGAG 59.184 55.000 14.47 1.80 0.00 3.69
4331 6604 1.916181 GAGACCCATTCTTCCCAGGAA 59.084 52.381 0.00 0.00 33.22 3.36
4346 6620 6.484977 ACAGAACAAAAGAAGATTCAGAGACC 59.515 38.462 0.00 0.00 0.00 3.85
4347 6621 7.225538 TCACAGAACAAAAGAAGATTCAGAGAC 59.774 37.037 0.00 0.00 0.00 3.36
4349 6623 7.488187 TCACAGAACAAAAGAAGATTCAGAG 57.512 36.000 0.00 0.00 0.00 3.35
4403 6680 1.268899 CTCTTCTGCTTTGTGCTTGGG 59.731 52.381 0.00 0.00 43.37 4.12
4415 6692 5.782047 ACAGCATATATGTCTCTCTTCTGC 58.218 41.667 14.14 0.00 0.00 4.26
4417 6694 7.358770 ACAACAGCATATATGTCTCTCTTCT 57.641 36.000 14.14 0.00 0.00 2.85
4418 6695 7.170658 GGAACAACAGCATATATGTCTCTCTTC 59.829 40.741 14.14 8.53 0.00 2.87
4419 6696 6.989169 GGAACAACAGCATATATGTCTCTCTT 59.011 38.462 14.14 0.53 0.00 2.85
4420 6697 6.098838 TGGAACAACAGCATATATGTCTCTCT 59.901 38.462 14.14 0.00 31.92 3.10
4421 6698 6.283694 TGGAACAACAGCATATATGTCTCTC 58.716 40.000 14.14 0.00 31.92 3.20
4472 6750 4.248842 CGCCACCAGTCACCACCA 62.249 66.667 0.00 0.00 0.00 4.17
4474 6752 4.250305 ACCGCCACCAGTCACCAC 62.250 66.667 0.00 0.00 0.00 4.16
4475 6753 4.248842 CACCGCCACCAGTCACCA 62.249 66.667 0.00 0.00 0.00 4.17
4479 6757 4.394712 CTCCCACCGCCACCAGTC 62.395 72.222 0.00 0.00 0.00 3.51
4480 6758 4.954118 TCTCCCACCGCCACCAGT 62.954 66.667 0.00 0.00 0.00 4.00
4481 6759 4.394712 GTCTCCCACCGCCACCAG 62.395 72.222 0.00 0.00 0.00 4.00
4498 6780 1.820906 CATCCCAGCCATGTCCACG 60.821 63.158 0.00 0.00 0.00 4.94
4607 6911 2.187946 CCAGTCCAGATCGCCACC 59.812 66.667 0.00 0.00 0.00 4.61
4667 6971 2.813908 AAACGTCGCGCTCCATCC 60.814 61.111 5.56 0.00 0.00 3.51
4744 7186 0.739813 GCCTACACACATGTCCCGTC 60.740 60.000 0.00 0.00 40.48 4.79
4747 7189 0.037590 TTGGCCTACACACATGTCCC 59.962 55.000 3.32 0.00 40.48 4.46
4823 7280 4.635833 GGTTTCAAGGTAAAAACCGACA 57.364 40.909 1.62 0.00 43.48 4.35
4844 7301 0.036952 CACACCTCACACCCTAGCTG 60.037 60.000 0.00 0.00 0.00 4.24
4868 7326 2.482839 CGAGAGGGATGAAAAGAGAGGC 60.483 54.545 0.00 0.00 0.00 4.70
4903 7363 1.021920 GCAAAGAAGAGAGGGACGGC 61.022 60.000 0.00 0.00 0.00 5.68
4916 7376 3.188460 GCCAGACGACAAAATAGCAAAGA 59.812 43.478 0.00 0.00 0.00 2.52
4922 7382 5.447279 GGTTATGTGCCAGACGACAAAATAG 60.447 44.000 0.00 0.00 0.00 1.73
4923 7383 4.393680 GGTTATGTGCCAGACGACAAAATA 59.606 41.667 0.00 0.00 0.00 1.40
4924 7384 3.190535 GGTTATGTGCCAGACGACAAAAT 59.809 43.478 0.00 0.00 0.00 1.82
4925 7385 2.550606 GGTTATGTGCCAGACGACAAAA 59.449 45.455 0.00 0.00 0.00 2.44
4926 7386 2.147958 GGTTATGTGCCAGACGACAAA 58.852 47.619 0.00 0.00 0.00 2.83
4927 7387 1.346395 AGGTTATGTGCCAGACGACAA 59.654 47.619 0.00 0.00 0.00 3.18
4928 7388 0.973632 AGGTTATGTGCCAGACGACA 59.026 50.000 0.00 0.00 0.00 4.35
4929 7389 1.359848 CAGGTTATGTGCCAGACGAC 58.640 55.000 0.00 0.00 0.00 4.34
4930 7390 0.391130 GCAGGTTATGTGCCAGACGA 60.391 55.000 0.00 0.00 34.67 4.20
4931 7391 0.673333 TGCAGGTTATGTGCCAGACG 60.673 55.000 0.00 0.00 40.43 4.18
4932 7392 1.200020 GTTGCAGGTTATGTGCCAGAC 59.800 52.381 0.00 0.00 40.43 3.51
4933 7393 1.073763 AGTTGCAGGTTATGTGCCAGA 59.926 47.619 0.00 0.00 40.43 3.86
4934 7394 1.470098 GAGTTGCAGGTTATGTGCCAG 59.530 52.381 0.00 0.00 40.43 4.85
4935 7395 1.073763 AGAGTTGCAGGTTATGTGCCA 59.926 47.619 0.00 0.00 40.43 4.92
4936 7396 1.826385 AGAGTTGCAGGTTATGTGCC 58.174 50.000 0.00 0.00 40.43 5.01
4937 7397 3.923017 AAAGAGTTGCAGGTTATGTGC 57.077 42.857 0.00 0.00 41.59 4.57
4938 7398 5.695851 AGAAAAGAGTTGCAGGTTATGTG 57.304 39.130 0.00 0.00 0.00 3.21
4939 7399 5.705905 GGTAGAAAAGAGTTGCAGGTTATGT 59.294 40.000 0.00 0.00 0.00 2.29
4940 7400 5.123979 GGGTAGAAAAGAGTTGCAGGTTATG 59.876 44.000 0.00 0.00 0.00 1.90
4941 7401 5.014228 AGGGTAGAAAAGAGTTGCAGGTTAT 59.986 40.000 0.00 0.00 0.00 1.89
4942 7402 4.349930 AGGGTAGAAAAGAGTTGCAGGTTA 59.650 41.667 0.00 0.00 0.00 2.85
4943 7403 3.138468 AGGGTAGAAAAGAGTTGCAGGTT 59.862 43.478 0.00 0.00 0.00 3.50
4944 7404 2.711547 AGGGTAGAAAAGAGTTGCAGGT 59.288 45.455 0.00 0.00 0.00 4.00
4945 7405 3.425162 AGGGTAGAAAAGAGTTGCAGG 57.575 47.619 0.00 0.00 0.00 4.85
4946 7406 3.057946 GCAAGGGTAGAAAAGAGTTGCAG 60.058 47.826 0.00 0.00 38.89 4.41
4947 7407 2.884639 GCAAGGGTAGAAAAGAGTTGCA 59.115 45.455 0.00 0.00 38.89 4.08
4948 7408 2.229062 GGCAAGGGTAGAAAAGAGTTGC 59.771 50.000 0.00 0.00 38.44 4.17
4949 7409 2.484264 CGGCAAGGGTAGAAAAGAGTTG 59.516 50.000 0.00 0.00 0.00 3.16
4950 7410 2.779506 CGGCAAGGGTAGAAAAGAGTT 58.220 47.619 0.00 0.00 0.00 3.01
4951 7411 1.610886 GCGGCAAGGGTAGAAAAGAGT 60.611 52.381 0.00 0.00 0.00 3.24
4952 7412 1.087501 GCGGCAAGGGTAGAAAAGAG 58.912 55.000 0.00 0.00 0.00 2.85
4953 7413 0.672401 CGCGGCAAGGGTAGAAAAGA 60.672 55.000 0.00 0.00 0.00 2.52
4954 7414 0.953960 ACGCGGCAAGGGTAGAAAAG 60.954 55.000 12.47 0.00 44.73 2.27
4955 7415 0.952010 GACGCGGCAAGGGTAGAAAA 60.952 55.000 7.34 0.00 46.65 2.29
4956 7416 1.375013 GACGCGGCAAGGGTAGAAA 60.375 57.895 7.34 0.00 46.65 2.52
4957 7417 2.263540 GACGCGGCAAGGGTAGAA 59.736 61.111 7.34 0.00 46.65 2.10
4958 7418 4.124351 CGACGCGGCAAGGGTAGA 62.124 66.667 14.85 0.00 46.65 2.59
4959 7419 3.426117 ATCGACGCGGCAAGGGTAG 62.426 63.158 14.85 0.00 46.65 3.18
4960 7420 3.420214 GATCGACGCGGCAAGGGTA 62.420 63.158 14.85 0.00 46.65 3.69
4962 7422 4.812476 TGATCGACGCGGCAAGGG 62.812 66.667 14.85 0.00 38.93 3.95
4963 7423 3.257561 CTGATCGACGCGGCAAGG 61.258 66.667 14.85 0.00 0.00 3.61
4964 7424 2.202610 TCTGATCGACGCGGCAAG 60.203 61.111 14.85 3.31 0.00 4.01
4965 7425 2.506217 GTCTGATCGACGCGGCAA 60.506 61.111 14.85 0.00 32.04 4.52
4966 7426 3.743636 TGTCTGATCGACGCGGCA 61.744 61.111 14.85 0.00 45.87 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.