Multiple sequence alignment - TraesCS7A01G446300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G446300 chr7A 100.000 8464 0 0 1 8464 641324964 641316501 0.000000e+00 15631.0
1 TraesCS7A01G446300 chr7A 80.137 146 18 6 255 391 521794716 521794859 1.940000e-16 99.0
2 TraesCS7A01G446300 chr7D 97.240 7573 147 27 412 7954 554592185 554599725 0.000000e+00 12770.0
3 TraesCS7A01G446300 chr7D 88.367 490 25 12 8002 8464 554600065 554600549 2.060000e-155 560.0
4 TraesCS7A01G446300 chr7D 78.008 482 68 24 7361 7832 554601029 554601482 1.400000e-67 268.0
5 TraesCS7A01G446300 chr7B 96.001 7901 212 44 629 8464 602082417 602074556 0.000000e+00 12744.0
6 TraesCS7A01G446300 chr7B 77.963 481 73 26 7361 7832 602060478 602060022 3.890000e-68 270.0
7 TraesCS7A01G446300 chr7B 85.776 232 24 3 7774 7998 602071796 602071567 3.950000e-58 237.0
8 TraesCS7A01G446300 chr4A 86.368 1005 90 27 1065 2056 563886096 563887066 0.000000e+00 1053.0
9 TraesCS7A01G446300 chr1B 86.155 1004 93 26 1065 2056 676164075 676165044 0.000000e+00 1042.0
10 TraesCS7A01G446300 chr1B 85.757 1004 97 26 1065 2056 676166559 676167528 0.000000e+00 1020.0
11 TraesCS7A01G446300 chr1B 84.045 445 49 9 4421 4863 439994639 439995063 7.910000e-110 409.0
12 TraesCS7A01G446300 chr4B 86.155 1004 92 27 1065 2056 401124036 401125004 0.000000e+00 1040.0
13 TraesCS7A01G446300 chr4B 77.707 157 22 12 268 414 214296105 214296258 5.440000e-12 84.2
14 TraesCS7A01G446300 chr1A 85.828 1009 99 24 1059 2056 370086767 370087742 0.000000e+00 1031.0
15 TraesCS7A01G446300 chr2A 85.729 995 94 26 1072 2056 667954855 667955811 0.000000e+00 1007.0
16 TraesCS7A01G446300 chr5A 85.458 1004 100 24 1065 2056 143009274 143010243 0.000000e+00 1003.0
17 TraesCS7A01G446300 chr6D 81.746 126 16 4 257 376 9156771 9156895 1.940000e-16 99.0
18 TraesCS7A01G446300 chr6D 78.616 159 23 10 268 417 4989731 4989575 2.520000e-15 95.3
19 TraesCS7A01G446300 chr3D 78.571 154 27 6 267 417 2688264 2688414 6.990000e-16 97.1
20 TraesCS7A01G446300 chr3D 78.947 152 25 4 269 414 31869931 31870081 6.990000e-16 97.1
21 TraesCS7A01G446300 chr3D 75.926 162 29 7 263 416 3987914 3987755 3.280000e-09 75.0
22 TraesCS7A01G446300 chr3B 82.609 115 15 1 294 403 802848627 802848513 6.990000e-16 97.1
23 TraesCS7A01G446300 chr4D 74.317 183 39 5 256 430 332900644 332900462 4.240000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G446300 chr7A 641316501 641324964 8463 True 15631.000000 15631 100.000000 1 8464 1 chr7A.!!$R1 8463
1 TraesCS7A01G446300 chr7D 554592185 554601482 9297 False 4532.666667 12770 87.871667 412 8464 3 chr7D.!!$F1 8052
2 TraesCS7A01G446300 chr7B 602071567 602082417 10850 True 6490.500000 12744 90.888500 629 8464 2 chr7B.!!$R2 7835
3 TraesCS7A01G446300 chr4A 563886096 563887066 970 False 1053.000000 1053 86.368000 1065 2056 1 chr4A.!!$F1 991
4 TraesCS7A01G446300 chr1B 676164075 676167528 3453 False 1031.000000 1042 85.956000 1065 2056 2 chr1B.!!$F2 991
5 TraesCS7A01G446300 chr4B 401124036 401125004 968 False 1040.000000 1040 86.155000 1065 2056 1 chr4B.!!$F2 991
6 TraesCS7A01G446300 chr1A 370086767 370087742 975 False 1031.000000 1031 85.828000 1059 2056 1 chr1A.!!$F1 997
7 TraesCS7A01G446300 chr2A 667954855 667955811 956 False 1007.000000 1007 85.729000 1072 2056 1 chr2A.!!$F1 984
8 TraesCS7A01G446300 chr5A 143009274 143010243 969 False 1003.000000 1003 85.458000 1065 2056 1 chr5A.!!$F1 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.036306 AGGCAGAACGTCGGGATTTT 59.964 50.000 0.00 0.0 0.00 1.82 F
230 231 0.110486 AAAGTGTCAACTCCCGCCAT 59.890 50.000 0.00 0.0 34.77 4.40 F
841 857 0.246635 CGTCCCGTCACATTCCTCTT 59.753 55.000 0.00 0.0 0.00 2.85 F
1382 1412 0.536233 CCGTGTGGTTTGATGTGGGA 60.536 55.000 0.00 0.0 0.00 4.37 F
1898 1950 3.013921 TCCGTTGCTTCTTGTCAGTTTT 58.986 40.909 0.00 0.0 0.00 2.43 F
2386 2438 4.792521 TTGGTTTATTTGATGGAACCCG 57.207 40.909 0.00 0.0 40.59 5.28 F
3162 3216 7.083858 GCAAATGAACTATCTTACTGTTTGCA 58.916 34.615 12.44 0.0 44.76 4.08 F
3694 3748 7.568349 TGAATTCCTCTGTGCACTAATATCTT 58.432 34.615 19.41 4.5 0.00 2.40 F
3960 4016 8.040727 TCTATTGTTAGCAAATGTCTGAGCTAA 58.959 33.333 0.00 0.0 44.58 3.09 F
5381 5437 2.919228 ACTTCTATCAAATGGACGGGC 58.081 47.619 0.00 0.0 0.00 6.13 F
6444 7254 5.591877 GCTGGTTCTTCATTCAGGTTATCAT 59.408 40.000 0.00 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 1693 0.780637 TCTGGTGTCTGGTCTCTCCT 59.219 55.000 0.00 0.0 37.07 3.69 R
2064 2116 4.764679 TGTGCAACTACAACATGGAATC 57.235 40.909 0.00 0.0 38.04 2.52 R
2643 2697 5.049405 AGTGCAAAGATTCAACTCGGTAAAG 60.049 40.000 0.00 0.0 0.00 1.85 R
3118 3172 1.367471 CTTCACTGCTCACCACGGA 59.633 57.895 0.00 0.0 0.00 4.69 R
3827 3883 3.696051 CCCCATGGAGATACAAAGTGTTG 59.304 47.826 15.22 0.0 40.84 3.33 R
3960 4016 6.238566 GCTAATGCATGTGAGTATGTGACATT 60.239 38.462 2.29 0.0 39.41 2.71 R
4503 4559 4.529897 CTCATCCCATGGTTCAAGATCAA 58.470 43.478 11.73 0.0 0.00 2.57 R
5381 5437 2.086869 CTACTCAACAACAGGGCATGG 58.913 52.381 3.46 0.0 0.00 3.66 R
6444 7254 6.813649 GCCAGATAAGATATGCAGAAATCGTA 59.186 38.462 0.00 0.0 0.00 3.43 R
6988 7800 2.936202 ACAGCAGAAATTGTGTCCACT 58.064 42.857 0.00 0.0 0.00 4.00 R
8138 9249 0.105778 GTGTAGCTCCTCAGATGCCC 59.894 60.000 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.087892 GCTCGAGCCCAGGCAGAA 62.088 66.667 27.22 0.00 44.88 3.02
19 20 2.125350 CTCGAGCCCAGGCAGAAC 60.125 66.667 12.03 0.00 44.88 3.01
20 21 3.997064 CTCGAGCCCAGGCAGAACG 62.997 68.421 12.03 10.71 44.88 3.95
21 22 4.379243 CGAGCCCAGGCAGAACGT 62.379 66.667 12.03 0.00 44.88 3.99
22 23 2.435059 GAGCCCAGGCAGAACGTC 60.435 66.667 12.03 0.00 44.88 4.34
23 24 4.379243 AGCCCAGGCAGAACGTCG 62.379 66.667 12.03 0.00 44.88 5.12
25 26 4.760047 CCCAGGCAGAACGTCGGG 62.760 72.222 0.00 0.00 33.76 5.14
26 27 3.691342 CCAGGCAGAACGTCGGGA 61.691 66.667 0.00 0.00 36.54 5.14
27 28 2.579201 CAGGCAGAACGTCGGGAT 59.421 61.111 0.00 0.00 0.00 3.85
28 29 1.079127 CAGGCAGAACGTCGGGATT 60.079 57.895 0.00 0.00 0.00 3.01
29 30 0.673644 CAGGCAGAACGTCGGGATTT 60.674 55.000 0.00 0.00 0.00 2.17
30 31 0.036306 AGGCAGAACGTCGGGATTTT 59.964 50.000 0.00 0.00 0.00 1.82
31 32 0.168128 GGCAGAACGTCGGGATTTTG 59.832 55.000 0.00 0.00 0.00 2.44
32 33 1.153353 GCAGAACGTCGGGATTTTGA 58.847 50.000 0.00 0.00 0.00 2.69
33 34 1.128692 GCAGAACGTCGGGATTTTGAG 59.871 52.381 0.00 0.00 0.00 3.02
34 35 1.128692 CAGAACGTCGGGATTTTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
35 36 0.446616 GAACGTCGGGATTTTGAGCC 59.553 55.000 0.00 0.00 0.00 4.70
36 37 0.250553 AACGTCGGGATTTTGAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
37 38 0.673644 ACGTCGGGATTTTGAGCCAG 60.674 55.000 0.00 0.00 0.00 4.85
38 39 1.369091 CGTCGGGATTTTGAGCCAGG 61.369 60.000 0.00 0.00 0.00 4.45
39 40 1.378514 TCGGGATTTTGAGCCAGGC 60.379 57.895 1.84 1.84 0.00 4.85
40 41 1.379044 CGGGATTTTGAGCCAGGCT 60.379 57.895 16.12 16.12 43.88 4.58
41 42 0.967380 CGGGATTTTGAGCCAGGCTT 60.967 55.000 17.46 0.00 39.88 4.35
42 43 1.269958 GGGATTTTGAGCCAGGCTTT 58.730 50.000 17.46 0.00 39.88 3.51
43 44 1.625315 GGGATTTTGAGCCAGGCTTTT 59.375 47.619 17.46 0.00 39.88 2.27
44 45 2.354103 GGGATTTTGAGCCAGGCTTTTC 60.354 50.000 17.46 3.42 39.88 2.29
45 46 2.599659 GATTTTGAGCCAGGCTTTTCG 58.400 47.619 17.46 0.00 39.88 3.46
46 47 0.673437 TTTTGAGCCAGGCTTTTCGG 59.327 50.000 17.46 0.00 39.88 4.30
47 48 1.178534 TTTGAGCCAGGCTTTTCGGG 61.179 55.000 17.46 0.00 39.88 5.14
48 49 2.063015 TTGAGCCAGGCTTTTCGGGA 62.063 55.000 17.46 0.00 39.88 5.14
49 50 1.077429 GAGCCAGGCTTTTCGGGAT 60.077 57.895 17.46 0.00 39.88 3.85
50 51 1.379044 AGCCAGGCTTTTCGGGATG 60.379 57.895 8.70 0.00 33.89 3.51
51 52 2.418083 GCCAGGCTTTTCGGGATGG 61.418 63.158 3.29 0.00 0.00 3.51
52 53 1.754234 CCAGGCTTTTCGGGATGGG 60.754 63.158 0.00 0.00 0.00 4.00
53 54 1.000896 CAGGCTTTTCGGGATGGGT 60.001 57.895 0.00 0.00 0.00 4.51
54 55 0.611896 CAGGCTTTTCGGGATGGGTT 60.612 55.000 0.00 0.00 0.00 4.11
55 56 0.611896 AGGCTTTTCGGGATGGGTTG 60.612 55.000 0.00 0.00 0.00 3.77
56 57 0.898326 GGCTTTTCGGGATGGGTTGT 60.898 55.000 0.00 0.00 0.00 3.32
57 58 0.526211 GCTTTTCGGGATGGGTTGTC 59.474 55.000 0.00 0.00 0.00 3.18
58 59 1.173913 CTTTTCGGGATGGGTTGTCC 58.826 55.000 0.00 0.00 34.92 4.02
66 67 4.358841 TGGGTTGTCCATGCCCGG 62.359 66.667 0.00 0.00 45.19 5.73
68 69 4.360405 GGTTGTCCATGCCCGGGT 62.360 66.667 24.63 0.00 0.00 5.28
69 70 2.750237 GTTGTCCATGCCCGGGTC 60.750 66.667 24.63 15.35 0.00 4.46
70 71 2.933287 TTGTCCATGCCCGGGTCT 60.933 61.111 24.63 6.75 0.00 3.85
71 72 1.613928 TTGTCCATGCCCGGGTCTA 60.614 57.895 24.63 9.73 0.00 2.59
72 73 1.202099 TTGTCCATGCCCGGGTCTAA 61.202 55.000 24.63 6.02 0.00 2.10
73 74 1.153229 GTCCATGCCCGGGTCTAAC 60.153 63.158 24.63 10.76 0.00 2.34
74 75 2.203015 CCATGCCCGGGTCTAACG 60.203 66.667 24.63 4.90 0.00 3.18
75 76 2.582436 CATGCCCGGGTCTAACGT 59.418 61.111 24.63 2.61 0.00 3.99
76 77 1.678598 CCATGCCCGGGTCTAACGTA 61.679 60.000 24.63 0.00 0.00 3.57
77 78 0.176219 CATGCCCGGGTCTAACGTAA 59.824 55.000 24.63 0.00 0.00 3.18
78 79 0.176449 ATGCCCGGGTCTAACGTAAC 59.824 55.000 24.63 0.70 0.00 2.50
79 80 1.153568 GCCCGGGTCTAACGTAACC 60.154 63.158 24.63 6.21 34.64 2.85
80 81 1.607801 GCCCGGGTCTAACGTAACCT 61.608 60.000 24.63 0.00 35.78 3.50
81 82 0.897621 CCCGGGTCTAACGTAACCTT 59.102 55.000 14.18 0.00 35.78 3.50
82 83 2.099405 CCCGGGTCTAACGTAACCTTA 58.901 52.381 14.18 0.00 35.78 2.69
83 84 2.159240 CCCGGGTCTAACGTAACCTTAC 60.159 54.545 14.18 0.00 35.78 2.34
84 85 2.755103 CCGGGTCTAACGTAACCTTACT 59.245 50.000 12.73 0.00 35.78 2.24
85 86 3.945285 CCGGGTCTAACGTAACCTTACTA 59.055 47.826 12.73 0.00 35.78 1.82
86 87 4.398044 CCGGGTCTAACGTAACCTTACTAA 59.602 45.833 12.73 0.00 35.78 2.24
87 88 5.332707 CGGGTCTAACGTAACCTTACTAAC 58.667 45.833 12.73 0.00 35.78 2.34
88 89 5.106317 CGGGTCTAACGTAACCTTACTAACA 60.106 44.000 12.73 0.00 35.78 2.41
89 90 6.569610 CGGGTCTAACGTAACCTTACTAACAA 60.570 42.308 12.73 0.00 35.78 2.83
90 91 7.151976 GGGTCTAACGTAACCTTACTAACAAA 58.848 38.462 12.73 0.00 35.78 2.83
91 92 7.116376 GGGTCTAACGTAACCTTACTAACAAAC 59.884 40.741 12.73 0.00 35.78 2.93
92 93 7.116376 GGTCTAACGTAACCTTACTAACAAACC 59.884 40.741 7.29 0.00 32.54 3.27
93 94 7.867909 GTCTAACGTAACCTTACTAACAAACCT 59.132 37.037 0.00 0.00 0.00 3.50
94 95 9.073475 TCTAACGTAACCTTACTAACAAACCTA 57.927 33.333 0.00 0.00 0.00 3.08
95 96 9.860898 CTAACGTAACCTTACTAACAAACCTAT 57.139 33.333 0.00 0.00 0.00 2.57
96 97 8.763049 AACGTAACCTTACTAACAAACCTATC 57.237 34.615 0.00 0.00 0.00 2.08
97 98 7.323420 ACGTAACCTTACTAACAAACCTATCC 58.677 38.462 0.00 0.00 0.00 2.59
98 99 6.473455 CGTAACCTTACTAACAAACCTATCCG 59.527 42.308 0.00 0.00 0.00 4.18
99 100 6.364568 AACCTTACTAACAAACCTATCCGT 57.635 37.500 0.00 0.00 0.00 4.69
100 101 5.970592 ACCTTACTAACAAACCTATCCGTC 58.029 41.667 0.00 0.00 0.00 4.79
101 102 5.105187 ACCTTACTAACAAACCTATCCGTCC 60.105 44.000 0.00 0.00 0.00 4.79
102 103 3.900966 ACTAACAAACCTATCCGTCCC 57.099 47.619 0.00 0.00 0.00 4.46
103 104 3.447950 ACTAACAAACCTATCCGTCCCT 58.552 45.455 0.00 0.00 0.00 4.20
104 105 3.450096 ACTAACAAACCTATCCGTCCCTC 59.550 47.826 0.00 0.00 0.00 4.30
105 106 1.946984 ACAAACCTATCCGTCCCTCA 58.053 50.000 0.00 0.00 0.00 3.86
106 107 2.262637 ACAAACCTATCCGTCCCTCAA 58.737 47.619 0.00 0.00 0.00 3.02
107 108 2.640826 ACAAACCTATCCGTCCCTCAAA 59.359 45.455 0.00 0.00 0.00 2.69
108 109 3.265995 ACAAACCTATCCGTCCCTCAAAT 59.734 43.478 0.00 0.00 0.00 2.32
109 110 4.263771 ACAAACCTATCCGTCCCTCAAATT 60.264 41.667 0.00 0.00 0.00 1.82
110 111 3.840124 ACCTATCCGTCCCTCAAATTC 57.160 47.619 0.00 0.00 0.00 2.17
111 112 3.112263 ACCTATCCGTCCCTCAAATTCA 58.888 45.455 0.00 0.00 0.00 2.57
112 113 3.521937 ACCTATCCGTCCCTCAAATTCAA 59.478 43.478 0.00 0.00 0.00 2.69
113 114 4.130118 CCTATCCGTCCCTCAAATTCAAG 58.870 47.826 0.00 0.00 0.00 3.02
114 115 3.721087 ATCCGTCCCTCAAATTCAAGT 57.279 42.857 0.00 0.00 0.00 3.16
115 116 2.778299 TCCGTCCCTCAAATTCAAGTG 58.222 47.619 0.00 0.00 0.00 3.16
116 117 1.812571 CCGTCCCTCAAATTCAAGTGG 59.187 52.381 0.00 0.00 0.00 4.00
117 118 1.812571 CGTCCCTCAAATTCAAGTGGG 59.187 52.381 6.39 6.39 39.38 4.61
118 119 2.814097 CGTCCCTCAAATTCAAGTGGGT 60.814 50.000 10.58 0.00 39.13 4.51
119 120 2.558359 GTCCCTCAAATTCAAGTGGGTG 59.442 50.000 10.58 0.00 39.13 4.61
120 121 1.895131 CCCTCAAATTCAAGTGGGTGG 59.105 52.381 0.00 0.00 34.60 4.61
121 122 1.895131 CCTCAAATTCAAGTGGGTGGG 59.105 52.381 0.00 0.00 0.00 4.61
122 123 1.273327 CTCAAATTCAAGTGGGTGGGC 59.727 52.381 0.00 0.00 0.00 5.36
123 124 1.133199 TCAAATTCAAGTGGGTGGGCT 60.133 47.619 0.00 0.00 0.00 5.19
124 125 1.273327 CAAATTCAAGTGGGTGGGCTC 59.727 52.381 0.00 0.00 0.00 4.70
125 126 0.251787 AATTCAAGTGGGTGGGCTCC 60.252 55.000 0.00 0.00 0.00 4.70
126 127 1.142688 ATTCAAGTGGGTGGGCTCCT 61.143 55.000 0.00 0.00 0.00 3.69
127 128 1.360393 TTCAAGTGGGTGGGCTCCTT 61.360 55.000 0.00 0.00 0.00 3.36
128 129 1.153756 CAAGTGGGTGGGCTCCTTT 59.846 57.895 0.00 0.00 0.00 3.11
129 130 0.895559 CAAGTGGGTGGGCTCCTTTC 60.896 60.000 0.00 0.00 0.00 2.62
130 131 2.035783 GTGGGTGGGCTCCTTTCC 59.964 66.667 0.00 0.00 0.00 3.13
131 132 3.264845 TGGGTGGGCTCCTTTCCC 61.265 66.667 0.00 0.00 44.17 3.97
132 133 4.062032 GGGTGGGCTCCTTTCCCC 62.062 72.222 0.00 0.00 43.24 4.81
133 134 2.941583 GGTGGGCTCCTTTCCCCT 60.942 66.667 0.00 0.00 43.24 4.79
134 135 1.618447 GGTGGGCTCCTTTCCCCTA 60.618 63.158 0.00 0.00 43.24 3.53
135 136 1.212250 GGTGGGCTCCTTTCCCCTAA 61.212 60.000 0.00 0.00 43.24 2.69
136 137 0.927029 GTGGGCTCCTTTCCCCTAAT 59.073 55.000 0.00 0.00 43.24 1.73
137 138 1.288037 GTGGGCTCCTTTCCCCTAATT 59.712 52.381 0.00 0.00 43.24 1.40
138 139 2.007636 TGGGCTCCTTTCCCCTAATTT 58.992 47.619 0.00 0.00 43.24 1.82
139 140 2.385417 TGGGCTCCTTTCCCCTAATTTT 59.615 45.455 0.00 0.00 43.24 1.82
140 141 3.598782 TGGGCTCCTTTCCCCTAATTTTA 59.401 43.478 0.00 0.00 43.24 1.52
141 142 4.234223 TGGGCTCCTTTCCCCTAATTTTAT 59.766 41.667 0.00 0.00 43.24 1.40
142 143 4.833380 GGGCTCCTTTCCCCTAATTTTATC 59.167 45.833 0.00 0.00 38.30 1.75
143 144 4.833380 GGCTCCTTTCCCCTAATTTTATCC 59.167 45.833 0.00 0.00 0.00 2.59
144 145 5.454966 GCTCCTTTCCCCTAATTTTATCCA 58.545 41.667 0.00 0.00 0.00 3.41
145 146 5.897250 GCTCCTTTCCCCTAATTTTATCCAA 59.103 40.000 0.00 0.00 0.00 3.53
146 147 6.554982 GCTCCTTTCCCCTAATTTTATCCAAT 59.445 38.462 0.00 0.00 0.00 3.16
147 148 7.728532 GCTCCTTTCCCCTAATTTTATCCAATA 59.271 37.037 0.00 0.00 0.00 1.90
148 149 9.301897 CTCCTTTCCCCTAATTTTATCCAATAG 57.698 37.037 0.00 0.00 0.00 1.73
149 150 9.020644 TCCTTTCCCCTAATTTTATCCAATAGA 57.979 33.333 0.00 0.00 0.00 1.98
150 151 9.654919 CCTTTCCCCTAATTTTATCCAATAGAA 57.345 33.333 0.00 0.00 0.00 2.10
152 153 9.654919 TTTCCCCTAATTTTATCCAATAGAAGG 57.345 33.333 0.00 0.00 0.00 3.46
153 154 8.590083 TCCCCTAATTTTATCCAATAGAAGGA 57.410 34.615 0.00 0.00 39.97 3.36
154 155 9.020644 TCCCCTAATTTTATCCAATAGAAGGAA 57.979 33.333 0.00 0.00 38.93 3.36
155 156 9.828691 CCCCTAATTTTATCCAATAGAAGGAAT 57.171 33.333 0.00 0.00 38.93 3.01
166 167 8.687292 TCCAATAGAAGGAATCATCTCAAATG 57.313 34.615 0.00 0.00 30.71 2.32
167 168 8.277197 TCCAATAGAAGGAATCATCTCAAATGT 58.723 33.333 0.00 0.00 30.71 2.71
168 169 8.910944 CCAATAGAAGGAATCATCTCAAATGTT 58.089 33.333 0.00 0.00 0.00 2.71
169 170 9.947669 CAATAGAAGGAATCATCTCAAATGTTC 57.052 33.333 0.00 0.00 0.00 3.18
170 171 9.690913 AATAGAAGGAATCATCTCAAATGTTCA 57.309 29.630 0.00 0.00 0.00 3.18
171 172 7.388460 AGAAGGAATCATCTCAAATGTTCAC 57.612 36.000 0.00 0.00 0.00 3.18
172 173 7.173722 AGAAGGAATCATCTCAAATGTTCACT 58.826 34.615 0.00 0.00 0.00 3.41
173 174 8.324306 AGAAGGAATCATCTCAAATGTTCACTA 58.676 33.333 0.00 0.00 0.00 2.74
174 175 9.118300 GAAGGAATCATCTCAAATGTTCACTAT 57.882 33.333 0.00 0.00 0.00 2.12
175 176 8.447924 AGGAATCATCTCAAATGTTCACTATG 57.552 34.615 0.00 0.00 0.00 2.23
176 177 7.501559 AGGAATCATCTCAAATGTTCACTATGG 59.498 37.037 0.00 0.00 0.00 2.74
177 178 7.284034 GGAATCATCTCAAATGTTCACTATGGT 59.716 37.037 0.00 0.00 0.00 3.55
178 179 8.585471 AATCATCTCAAATGTTCACTATGGTT 57.415 30.769 0.00 0.00 0.00 3.67
179 180 7.615582 TCATCTCAAATGTTCACTATGGTTC 57.384 36.000 0.00 0.00 0.00 3.62
180 181 6.599244 TCATCTCAAATGTTCACTATGGTTCC 59.401 38.462 0.00 0.00 0.00 3.62
181 182 4.935205 TCTCAAATGTTCACTATGGTTCCG 59.065 41.667 0.00 0.00 0.00 4.30
182 183 4.647611 TCAAATGTTCACTATGGTTCCGT 58.352 39.130 0.00 0.00 0.00 4.69
183 184 4.693566 TCAAATGTTCACTATGGTTCCGTC 59.306 41.667 0.00 0.00 0.00 4.79
184 185 2.754946 TGTTCACTATGGTTCCGTCC 57.245 50.000 0.00 0.00 0.00 4.79
185 186 1.276989 TGTTCACTATGGTTCCGTCCC 59.723 52.381 0.00 0.00 0.00 4.46
186 187 1.276989 GTTCACTATGGTTCCGTCCCA 59.723 52.381 0.00 0.00 36.16 4.37
187 188 1.646912 TCACTATGGTTCCGTCCCAA 58.353 50.000 0.00 0.00 35.14 4.12
188 189 2.193127 TCACTATGGTTCCGTCCCAAT 58.807 47.619 0.00 0.00 35.14 3.16
189 190 2.574369 TCACTATGGTTCCGTCCCAATT 59.426 45.455 0.00 0.00 35.14 2.32
190 191 2.943033 CACTATGGTTCCGTCCCAATTC 59.057 50.000 0.00 0.00 35.14 2.17
191 192 2.844348 ACTATGGTTCCGTCCCAATTCT 59.156 45.455 0.00 0.00 35.14 2.40
192 193 2.899303 ATGGTTCCGTCCCAATTCTT 57.101 45.000 0.00 0.00 35.14 2.52
193 194 2.668144 TGGTTCCGTCCCAATTCTTT 57.332 45.000 0.00 0.00 0.00 2.52
194 195 3.791953 TGGTTCCGTCCCAATTCTTTA 57.208 42.857 0.00 0.00 0.00 1.85
195 196 4.310022 TGGTTCCGTCCCAATTCTTTAT 57.690 40.909 0.00 0.00 0.00 1.40
196 197 5.438698 TGGTTCCGTCCCAATTCTTTATA 57.561 39.130 0.00 0.00 0.00 0.98
197 198 6.008696 TGGTTCCGTCCCAATTCTTTATAT 57.991 37.500 0.00 0.00 0.00 0.86
198 199 5.825679 TGGTTCCGTCCCAATTCTTTATATG 59.174 40.000 0.00 0.00 0.00 1.78
199 200 5.826208 GGTTCCGTCCCAATTCTTTATATGT 59.174 40.000 0.00 0.00 0.00 2.29
200 201 6.993902 GGTTCCGTCCCAATTCTTTATATGTA 59.006 38.462 0.00 0.00 0.00 2.29
201 202 7.499895 GGTTCCGTCCCAATTCTTTATATGTAA 59.500 37.037 0.00 0.00 0.00 2.41
202 203 8.340443 GTTCCGTCCCAATTCTTTATATGTAAC 58.660 37.037 0.00 0.00 0.00 2.50
203 204 6.993902 TCCGTCCCAATTCTTTATATGTAACC 59.006 38.462 0.00 0.00 0.00 2.85
204 205 6.996282 CCGTCCCAATTCTTTATATGTAACCT 59.004 38.462 0.00 0.00 0.00 3.50
205 206 7.172703 CCGTCCCAATTCTTTATATGTAACCTC 59.827 40.741 0.00 0.00 0.00 3.85
206 207 7.931948 CGTCCCAATTCTTTATATGTAACCTCT 59.068 37.037 0.00 0.00 0.00 3.69
207 208 9.274206 GTCCCAATTCTTTATATGTAACCTCTC 57.726 37.037 0.00 0.00 0.00 3.20
208 209 8.437575 TCCCAATTCTTTATATGTAACCTCTCC 58.562 37.037 0.00 0.00 0.00 3.71
209 210 8.440771 CCCAATTCTTTATATGTAACCTCTCCT 58.559 37.037 0.00 0.00 0.00 3.69
210 211 9.495572 CCAATTCTTTATATGTAACCTCTCCTC 57.504 37.037 0.00 0.00 0.00 3.71
215 216 9.268282 TCTTTATATGTAACCTCTCCTCAAAGT 57.732 33.333 0.00 0.00 0.00 2.66
216 217 9.319143 CTTTATATGTAACCTCTCCTCAAAGTG 57.681 37.037 0.00 0.00 0.00 3.16
217 218 6.875972 ATATGTAACCTCTCCTCAAAGTGT 57.124 37.500 0.00 0.00 0.00 3.55
218 219 4.602340 TGTAACCTCTCCTCAAAGTGTC 57.398 45.455 0.00 0.00 0.00 3.67
219 220 3.964688 TGTAACCTCTCCTCAAAGTGTCA 59.035 43.478 0.00 0.00 0.00 3.58
220 221 4.407621 TGTAACCTCTCCTCAAAGTGTCAA 59.592 41.667 0.00 0.00 0.00 3.18
221 222 3.477210 ACCTCTCCTCAAAGTGTCAAC 57.523 47.619 0.00 0.00 0.00 3.18
222 223 3.041946 ACCTCTCCTCAAAGTGTCAACT 58.958 45.455 0.00 0.00 38.71 3.16
223 224 3.070302 ACCTCTCCTCAAAGTGTCAACTC 59.930 47.826 0.00 0.00 34.77 3.01
224 225 3.556004 CCTCTCCTCAAAGTGTCAACTCC 60.556 52.174 0.00 0.00 34.77 3.85
225 226 2.368875 TCTCCTCAAAGTGTCAACTCCC 59.631 50.000 0.00 0.00 34.77 4.30
226 227 1.070134 TCCTCAAAGTGTCAACTCCCG 59.930 52.381 0.00 0.00 34.77 5.14
227 228 0.868406 CTCAAAGTGTCAACTCCCGC 59.132 55.000 0.00 0.00 34.77 6.13
228 229 0.534203 TCAAAGTGTCAACTCCCGCC 60.534 55.000 0.00 0.00 34.77 6.13
229 230 0.817634 CAAAGTGTCAACTCCCGCCA 60.818 55.000 0.00 0.00 34.77 5.69
230 231 0.110486 AAAGTGTCAACTCCCGCCAT 59.890 50.000 0.00 0.00 34.77 4.40
231 232 0.110486 AAGTGTCAACTCCCGCCATT 59.890 50.000 0.00 0.00 34.77 3.16
232 233 0.981183 AGTGTCAACTCCCGCCATTA 59.019 50.000 0.00 0.00 26.77 1.90
233 234 1.559682 AGTGTCAACTCCCGCCATTAT 59.440 47.619 0.00 0.00 26.77 1.28
234 235 2.769663 AGTGTCAACTCCCGCCATTATA 59.230 45.455 0.00 0.00 26.77 0.98
235 236 2.870411 GTGTCAACTCCCGCCATTATAC 59.130 50.000 0.00 0.00 0.00 1.47
236 237 2.769663 TGTCAACTCCCGCCATTATACT 59.230 45.455 0.00 0.00 0.00 2.12
237 238 3.199071 TGTCAACTCCCGCCATTATACTT 59.801 43.478 0.00 0.00 0.00 2.24
238 239 4.196971 GTCAACTCCCGCCATTATACTTT 58.803 43.478 0.00 0.00 0.00 2.66
239 240 4.035208 GTCAACTCCCGCCATTATACTTTG 59.965 45.833 0.00 0.00 0.00 2.77
240 241 3.926058 ACTCCCGCCATTATACTTTGT 57.074 42.857 0.00 0.00 0.00 2.83
241 242 4.230745 ACTCCCGCCATTATACTTTGTT 57.769 40.909 0.00 0.00 0.00 2.83
242 243 3.945285 ACTCCCGCCATTATACTTTGTTG 59.055 43.478 0.00 0.00 0.00 3.33
243 244 3.945285 CTCCCGCCATTATACTTTGTTGT 59.055 43.478 0.00 0.00 0.00 3.32
244 245 3.692101 TCCCGCCATTATACTTTGTTGTG 59.308 43.478 0.00 0.00 0.00 3.33
245 246 3.692101 CCCGCCATTATACTTTGTTGTGA 59.308 43.478 0.00 0.00 0.00 3.58
246 247 4.156922 CCCGCCATTATACTTTGTTGTGAA 59.843 41.667 0.00 0.00 0.00 3.18
247 248 5.163561 CCCGCCATTATACTTTGTTGTGAAT 60.164 40.000 0.00 0.00 0.00 2.57
248 249 6.038825 CCCGCCATTATACTTTGTTGTGAATA 59.961 38.462 0.00 0.00 0.00 1.75
249 250 7.255451 CCCGCCATTATACTTTGTTGTGAATAT 60.255 37.037 0.00 0.00 0.00 1.28
250 251 7.591057 CCGCCATTATACTTTGTTGTGAATATG 59.409 37.037 0.00 0.00 0.00 1.78
251 252 8.128582 CGCCATTATACTTTGTTGTGAATATGT 58.871 33.333 0.00 0.00 0.00 2.29
338 339 9.828039 TTCTATAGATGTAGTTTAGAGTGTCGA 57.172 33.333 2.58 0.00 0.00 4.20
339 340 9.999660 TCTATAGATGTAGTTTAGAGTGTCGAT 57.000 33.333 0.00 0.00 0.00 3.59
342 343 7.392494 AGATGTAGTTTAGAGTGTCGATTCA 57.608 36.000 0.00 0.00 0.00 2.57
343 344 7.251994 AGATGTAGTTTAGAGTGTCGATTCAC 58.748 38.462 0.00 0.00 38.46 3.18
352 353 4.410492 AGTGTCGATTCACTCATTTTGC 57.590 40.909 2.98 0.00 44.07 3.68
353 354 4.067896 AGTGTCGATTCACTCATTTTGCT 58.932 39.130 2.98 0.00 44.07 3.91
354 355 4.516698 AGTGTCGATTCACTCATTTTGCTT 59.483 37.500 2.98 0.00 44.07 3.91
355 356 4.848299 GTGTCGATTCACTCATTTTGCTTC 59.152 41.667 0.00 0.00 35.68 3.86
356 357 4.084507 GTCGATTCACTCATTTTGCTTCG 58.915 43.478 0.00 0.00 0.00 3.79
357 358 3.745975 TCGATTCACTCATTTTGCTTCGT 59.254 39.130 0.00 0.00 0.00 3.85
358 359 4.926832 TCGATTCACTCATTTTGCTTCGTA 59.073 37.500 0.00 0.00 0.00 3.43
359 360 5.015733 CGATTCACTCATTTTGCTTCGTAC 58.984 41.667 0.00 0.00 0.00 3.67
360 361 4.383774 TTCACTCATTTTGCTTCGTACG 57.616 40.909 9.53 9.53 0.00 3.67
361 362 3.386486 TCACTCATTTTGCTTCGTACGT 58.614 40.909 16.05 0.00 0.00 3.57
362 363 3.805422 TCACTCATTTTGCTTCGTACGTT 59.195 39.130 16.05 0.00 0.00 3.99
363 364 3.900116 CACTCATTTTGCTTCGTACGTTG 59.100 43.478 16.05 10.25 0.00 4.10
364 365 3.558418 ACTCATTTTGCTTCGTACGTTGT 59.442 39.130 16.05 0.00 0.00 3.32
365 366 4.123276 TCATTTTGCTTCGTACGTTGTC 57.877 40.909 16.05 4.09 0.00 3.18
366 367 3.059461 TCATTTTGCTTCGTACGTTGTCC 60.059 43.478 16.05 1.56 0.00 4.02
367 368 1.937278 TTTGCTTCGTACGTTGTCCA 58.063 45.000 16.05 4.17 0.00 4.02
368 369 2.157834 TTGCTTCGTACGTTGTCCAT 57.842 45.000 16.05 0.00 0.00 3.41
369 370 3.300852 TTGCTTCGTACGTTGTCCATA 57.699 42.857 16.05 0.00 0.00 2.74
370 371 3.513680 TGCTTCGTACGTTGTCCATAT 57.486 42.857 16.05 0.00 0.00 1.78
371 372 3.852286 TGCTTCGTACGTTGTCCATATT 58.148 40.909 16.05 0.00 0.00 1.28
372 373 4.996344 TGCTTCGTACGTTGTCCATATTA 58.004 39.130 16.05 0.00 0.00 0.98
373 374 5.409211 TGCTTCGTACGTTGTCCATATTAA 58.591 37.500 16.05 0.00 0.00 1.40
374 375 5.868258 TGCTTCGTACGTTGTCCATATTAAA 59.132 36.000 16.05 0.00 0.00 1.52
375 376 6.368243 TGCTTCGTACGTTGTCCATATTAAAA 59.632 34.615 16.05 0.00 0.00 1.52
376 377 7.064847 TGCTTCGTACGTTGTCCATATTAAAAT 59.935 33.333 16.05 0.00 0.00 1.82
377 378 7.581600 GCTTCGTACGTTGTCCATATTAAAATC 59.418 37.037 16.05 0.00 0.00 2.17
378 379 8.706492 TTCGTACGTTGTCCATATTAAAATCT 57.294 30.769 16.05 0.00 0.00 2.40
379 380 8.706492 TCGTACGTTGTCCATATTAAAATCTT 57.294 30.769 16.05 0.00 0.00 2.40
380 381 9.153721 TCGTACGTTGTCCATATTAAAATCTTT 57.846 29.630 16.05 0.00 0.00 2.52
409 410 9.396022 ACAGACTTCATTTTAGAAACAAAGAGA 57.604 29.630 0.00 0.00 0.00 3.10
410 411 9.875675 CAGACTTCATTTTAGAAACAAAGAGAG 57.124 33.333 0.00 0.00 0.00 3.20
411 412 9.620259 AGACTTCATTTTAGAAACAAAGAGAGT 57.380 29.630 0.00 0.00 0.00 3.24
444 445 0.896940 ACGGAGGGAGTAGCGTTTCA 60.897 55.000 0.00 0.00 0.00 2.69
456 457 6.224420 AGTAGCGTTTCAGTTTGTTACATC 57.776 37.500 0.00 0.00 0.00 3.06
459 460 3.972502 GCGTTTCAGTTTGTTACATCCAC 59.027 43.478 0.00 0.00 0.00 4.02
470 474 7.228706 AGTTTGTTACATCCACGAGAAAGAAAT 59.771 33.333 0.00 0.00 0.00 2.17
476 480 5.641209 ACATCCACGAGAAAGAAATCAAGAG 59.359 40.000 0.00 0.00 0.00 2.85
480 484 5.119898 CCACGAGAAAGAAATCAAGAGTCAG 59.880 44.000 0.00 0.00 0.00 3.51
484 488 6.090628 CGAGAAAGAAATCAAGAGTCAGAAGG 59.909 42.308 0.00 0.00 0.00 3.46
493 497 2.317040 AGAGTCAGAAGGAAACCACGA 58.683 47.619 0.00 0.00 0.00 4.35
495 499 2.296471 GAGTCAGAAGGAAACCACGAGA 59.704 50.000 0.00 0.00 0.00 4.04
502 506 0.517316 GGAAACCACGAGACACATGC 59.483 55.000 0.00 0.00 0.00 4.06
508 512 0.992072 CACGAGACACATGCGGTAAG 59.008 55.000 0.00 0.00 0.00 2.34
595 603 3.469008 TTGGGCCTGTTCGTAGATATG 57.531 47.619 4.53 0.00 35.04 1.78
654 663 2.045143 ACCGACCGAGAGAGACCC 60.045 66.667 0.00 0.00 0.00 4.46
679 688 2.202756 CTTCGCGCTCACCCCTAC 60.203 66.667 5.56 0.00 0.00 3.18
680 689 2.992689 TTCGCGCTCACCCCTACA 60.993 61.111 5.56 0.00 0.00 2.74
681 690 3.291101 TTCGCGCTCACCCCTACAC 62.291 63.158 5.56 0.00 0.00 2.90
684 693 4.814294 CGCTCACCCCTACACGGC 62.814 72.222 0.00 0.00 0.00 5.68
685 694 4.814294 GCTCACCCCTACACGGCG 62.814 72.222 4.80 4.80 0.00 6.46
686 695 4.814294 CTCACCCCTACACGGCGC 62.814 72.222 6.90 0.00 0.00 6.53
764 780 2.756283 CGAGCTCCTCCCGTTCCT 60.756 66.667 8.47 0.00 0.00 3.36
812 828 4.030452 GCGGCAGCTGTTTTCGCT 62.030 61.111 26.00 0.00 42.62 4.93
841 857 0.246635 CGTCCCGTCACATTCCTCTT 59.753 55.000 0.00 0.00 0.00 2.85
843 859 1.002087 GTCCCGTCACATTCCTCTTGT 59.998 52.381 0.00 0.00 0.00 3.16
863 879 2.285668 AAGGGCAGCCTAGCTCCA 60.286 61.111 12.43 0.00 36.40 3.86
960 976 1.676678 GCGCCTGTCATCTCCTACCA 61.677 60.000 0.00 0.00 0.00 3.25
1007 1023 4.382114 CGTTGCCGCGATGTTGCA 62.382 61.111 8.23 4.98 34.15 4.08
1150 1172 1.223487 GAGGCCATCCAGCGGTAAA 59.777 57.895 5.01 0.00 33.74 2.01
1151 1173 0.815615 GAGGCCATCCAGCGGTAAAG 60.816 60.000 5.01 0.00 33.74 1.85
1189 1219 1.072331 CCCCTTCGATCCCCAATACTG 59.928 57.143 0.00 0.00 0.00 2.74
1382 1412 0.536233 CCGTGTGGTTTGATGTGGGA 60.536 55.000 0.00 0.00 0.00 4.37
1509 1554 3.441222 TGTAATTTGGATGCTCTGCAGTG 59.559 43.478 14.67 12.95 43.65 3.66
1898 1950 3.013921 TCCGTTGCTTCTTGTCAGTTTT 58.986 40.909 0.00 0.00 0.00 2.43
2064 2116 8.279970 TGTTGAACTATCCATATTGACTTTGG 57.720 34.615 0.00 0.00 0.00 3.28
2186 2238 4.889409 CCCACTAACCAATGTCATGCTTAT 59.111 41.667 0.00 0.00 0.00 1.73
2386 2438 4.792521 TTGGTTTATTTGATGGAACCCG 57.207 40.909 0.00 0.00 40.59 5.28
3162 3216 7.083858 GCAAATGAACTATCTTACTGTTTGCA 58.916 34.615 12.44 0.00 44.76 4.08
3694 3748 7.568349 TGAATTCCTCTGTGCACTAATATCTT 58.432 34.615 19.41 4.50 0.00 2.40
3827 3883 8.357402 ACAAGTTGGTTATTTGGACAAGTAATC 58.643 33.333 7.96 4.04 0.00 1.75
3960 4016 8.040727 TCTATTGTTAGCAAATGTCTGAGCTAA 58.959 33.333 0.00 0.00 44.58 3.09
4121 4177 8.798975 ATTGGACCTGATATACTTTCCTAAGA 57.201 34.615 0.00 0.00 35.30 2.10
4503 4559 8.128322 AGAAGAGTATGTAATGACAAGAGTGT 57.872 34.615 0.00 0.00 39.59 3.55
4866 4922 9.860898 GTTGCTTAAATTCTTGAGGACATAAAT 57.139 29.630 0.00 0.00 0.00 1.40
4943 4999 8.956446 TTCCCTTCTCTTTTATCCTTTTTGAT 57.044 30.769 0.00 0.00 0.00 2.57
5314 5370 8.122952 GTCACACCTAATAGACATTAACAATGC 58.877 37.037 0.00 0.00 42.69 3.56
5381 5437 2.919228 ACTTCTATCAAATGGACGGGC 58.081 47.619 0.00 0.00 0.00 6.13
6444 7254 5.591877 GCTGGTTCTTCATTCAGGTTATCAT 59.408 40.000 0.00 0.00 0.00 2.45
6654 7466 8.691661 ACTTCTTTTGCTATTGGACTCTTTAA 57.308 30.769 0.00 0.00 0.00 1.52
6988 7800 1.375908 GGAGCACACATCGAAGCCA 60.376 57.895 0.00 0.00 0.00 4.75
7121 7933 2.838813 GGTAGGGGTTTCTAGCTGTCTT 59.161 50.000 0.00 0.00 35.53 3.01
7728 8544 9.971922 CACATATTAGATCAACTGAGTGTATCA 57.028 33.333 9.31 0.00 36.21 2.15
7824 8640 5.982356 TGTGTTCTTTGAGATCATCCTAGG 58.018 41.667 0.82 0.82 0.00 3.02
7851 8668 4.091945 CACTTCATGGTAACTGATGACACG 59.908 45.833 0.00 0.00 37.61 4.49
7857 8674 3.118920 TGGTAACTGATGACACGTATGGG 60.119 47.826 0.00 0.00 37.61 4.00
7861 8678 3.628008 ACTGATGACACGTATGGGTAGA 58.372 45.455 0.00 0.00 0.00 2.59
7954 8771 6.433093 ACCTTATCGGTGCTTTTGATAACTTT 59.567 34.615 0.00 0.00 46.80 2.66
8032 9141 8.810652 TTAAATGACGATTCGATGATATGTGA 57.189 30.769 13.95 0.00 0.00 3.58
8085 9194 5.682234 ATGGCTGCTTAGGCTTTATTTTT 57.318 34.783 0.00 0.00 39.59 1.94
8138 9249 1.068055 GTGCAGCCTCTCAAAATGTGG 60.068 52.381 0.00 0.00 0.00 4.17
8179 9290 7.810658 ACACTGTGAACTTGAATTGATATGAC 58.189 34.615 15.86 0.00 0.00 3.06
8250 9386 6.312399 TGTTAGTGACAATGCACTTTAAGG 57.688 37.500 13.63 0.00 46.42 2.69
8356 9492 0.606401 CGAAGGCCCATGTGTTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.125350 GTTCTGCCTGGGCTCGAG 60.125 66.667 8.45 8.45 42.51 4.04
3 4 4.069232 CGTTCTGCCTGGGCTCGA 62.069 66.667 13.05 6.63 42.51 4.04
4 5 4.379243 ACGTTCTGCCTGGGCTCG 62.379 66.667 13.05 13.24 42.51 5.03
5 6 2.435059 GACGTTCTGCCTGGGCTC 60.435 66.667 13.05 0.00 42.51 4.70
10 11 0.673644 AAATCCCGACGTTCTGCCTG 60.674 55.000 0.00 0.00 0.00 4.85
11 12 0.036306 AAAATCCCGACGTTCTGCCT 59.964 50.000 0.00 0.00 0.00 4.75
13 14 1.128692 CTCAAAATCCCGACGTTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
15 16 1.439679 GCTCAAAATCCCGACGTTCT 58.560 50.000 0.00 0.00 0.00 3.01
17 18 0.250553 TGGCTCAAAATCCCGACGTT 60.251 50.000 0.00 0.00 0.00 3.99
18 19 0.673644 CTGGCTCAAAATCCCGACGT 60.674 55.000 0.00 0.00 0.00 4.34
19 20 1.369091 CCTGGCTCAAAATCCCGACG 61.369 60.000 0.00 0.00 0.00 5.12
20 21 1.657751 GCCTGGCTCAAAATCCCGAC 61.658 60.000 12.43 0.00 0.00 4.79
21 22 1.378514 GCCTGGCTCAAAATCCCGA 60.379 57.895 12.43 0.00 0.00 5.14
22 23 0.967380 AAGCCTGGCTCAAAATCCCG 60.967 55.000 23.61 0.00 38.25 5.14
23 24 1.269958 AAAGCCTGGCTCAAAATCCC 58.730 50.000 23.61 0.00 38.25 3.85
24 25 2.672195 CGAAAAGCCTGGCTCAAAATCC 60.672 50.000 23.61 6.40 38.25 3.01
25 26 2.599659 CGAAAAGCCTGGCTCAAAATC 58.400 47.619 23.61 14.08 38.25 2.17
26 27 1.273327 CCGAAAAGCCTGGCTCAAAAT 59.727 47.619 23.61 2.14 38.25 1.82
27 28 0.673437 CCGAAAAGCCTGGCTCAAAA 59.327 50.000 23.61 0.00 38.25 2.44
28 29 1.178534 CCCGAAAAGCCTGGCTCAAA 61.179 55.000 23.61 0.00 38.25 2.69
29 30 1.603455 CCCGAAAAGCCTGGCTCAA 60.603 57.895 23.61 0.00 38.25 3.02
30 31 1.852157 ATCCCGAAAAGCCTGGCTCA 61.852 55.000 23.61 0.46 38.25 4.26
31 32 1.077429 ATCCCGAAAAGCCTGGCTC 60.077 57.895 23.61 9.11 38.25 4.70
32 33 1.379044 CATCCCGAAAAGCCTGGCT 60.379 57.895 17.22 17.22 42.56 4.75
33 34 2.418083 CCATCCCGAAAAGCCTGGC 61.418 63.158 11.65 11.65 0.00 4.85
34 35 1.754234 CCCATCCCGAAAAGCCTGG 60.754 63.158 0.00 0.00 0.00 4.45
35 36 0.611896 AACCCATCCCGAAAAGCCTG 60.612 55.000 0.00 0.00 0.00 4.85
36 37 0.611896 CAACCCATCCCGAAAAGCCT 60.612 55.000 0.00 0.00 0.00 4.58
37 38 0.898326 ACAACCCATCCCGAAAAGCC 60.898 55.000 0.00 0.00 0.00 4.35
38 39 0.526211 GACAACCCATCCCGAAAAGC 59.474 55.000 0.00 0.00 0.00 3.51
39 40 1.173913 GGACAACCCATCCCGAAAAG 58.826 55.000 0.00 0.00 34.14 2.27
40 41 0.478942 TGGACAACCCATCCCGAAAA 59.521 50.000 0.00 0.00 40.82 2.29
41 42 2.155992 TGGACAACCCATCCCGAAA 58.844 52.632 0.00 0.00 40.82 3.46
42 43 3.908508 TGGACAACCCATCCCGAA 58.091 55.556 0.00 0.00 40.82 4.30
51 52 4.360405 ACCCGGGCATGGACAACC 62.360 66.667 24.08 0.00 0.00 3.77
52 53 1.906105 TAGACCCGGGCATGGACAAC 61.906 60.000 24.08 0.69 0.00 3.32
53 54 1.202099 TTAGACCCGGGCATGGACAA 61.202 55.000 24.08 1.93 0.00 3.18
54 55 1.613928 TTAGACCCGGGCATGGACA 60.614 57.895 24.08 0.00 0.00 4.02
55 56 1.153229 GTTAGACCCGGGCATGGAC 60.153 63.158 24.08 9.75 0.00 4.02
56 57 2.727392 CGTTAGACCCGGGCATGGA 61.727 63.158 24.08 0.00 0.00 3.41
57 58 1.678598 TACGTTAGACCCGGGCATGG 61.679 60.000 24.08 7.94 0.00 3.66
58 59 0.176219 TTACGTTAGACCCGGGCATG 59.824 55.000 24.08 10.39 0.00 4.06
59 60 0.176449 GTTACGTTAGACCCGGGCAT 59.824 55.000 24.08 12.56 0.00 4.40
60 61 1.591183 GTTACGTTAGACCCGGGCA 59.409 57.895 24.08 2.33 0.00 5.36
61 62 1.153568 GGTTACGTTAGACCCGGGC 60.154 63.158 24.08 14.21 0.00 6.13
62 63 0.897621 AAGGTTACGTTAGACCCGGG 59.102 55.000 22.25 22.25 36.57 5.73
63 64 2.755103 AGTAAGGTTACGTTAGACCCGG 59.245 50.000 10.66 0.00 38.65 5.73
64 65 5.106317 TGTTAGTAAGGTTACGTTAGACCCG 60.106 44.000 10.66 0.00 38.65 5.28
65 66 6.267496 TGTTAGTAAGGTTACGTTAGACCC 57.733 41.667 10.66 0.00 38.65 4.46
66 67 7.116376 GGTTTGTTAGTAAGGTTACGTTAGACC 59.884 40.741 0.00 0.00 38.65 3.85
67 68 7.867909 AGGTTTGTTAGTAAGGTTACGTTAGAC 59.132 37.037 0.00 0.00 38.65 2.59
68 69 7.951591 AGGTTTGTTAGTAAGGTTACGTTAGA 58.048 34.615 0.00 0.00 38.65 2.10
69 70 9.860898 ATAGGTTTGTTAGTAAGGTTACGTTAG 57.139 33.333 0.00 0.00 38.65 2.34
70 71 9.855021 GATAGGTTTGTTAGTAAGGTTACGTTA 57.145 33.333 0.00 0.00 38.65 3.18
71 72 7.819415 GGATAGGTTTGTTAGTAAGGTTACGTT 59.181 37.037 0.00 0.00 38.65 3.99
72 73 7.323420 GGATAGGTTTGTTAGTAAGGTTACGT 58.677 38.462 0.00 0.00 38.65 3.57
73 74 6.473455 CGGATAGGTTTGTTAGTAAGGTTACG 59.527 42.308 0.00 0.00 38.65 3.18
74 75 7.323420 ACGGATAGGTTTGTTAGTAAGGTTAC 58.677 38.462 0.00 0.00 0.00 2.50
75 76 7.363793 GGACGGATAGGTTTGTTAGTAAGGTTA 60.364 40.741 0.00 0.00 0.00 2.85
76 77 6.364568 ACGGATAGGTTTGTTAGTAAGGTT 57.635 37.500 0.00 0.00 0.00 3.50
77 78 5.105187 GGACGGATAGGTTTGTTAGTAAGGT 60.105 44.000 0.00 0.00 0.00 3.50
78 79 5.354767 GGACGGATAGGTTTGTTAGTAAGG 58.645 45.833 0.00 0.00 0.00 2.69
79 80 5.128335 AGGGACGGATAGGTTTGTTAGTAAG 59.872 44.000 0.00 0.00 0.00 2.34
80 81 5.025453 AGGGACGGATAGGTTTGTTAGTAA 58.975 41.667 0.00 0.00 0.00 2.24
81 82 4.613437 AGGGACGGATAGGTTTGTTAGTA 58.387 43.478 0.00 0.00 0.00 1.82
82 83 3.447950 AGGGACGGATAGGTTTGTTAGT 58.552 45.455 0.00 0.00 0.00 2.24
83 84 3.449737 TGAGGGACGGATAGGTTTGTTAG 59.550 47.826 0.00 0.00 0.00 2.34
84 85 3.443052 TGAGGGACGGATAGGTTTGTTA 58.557 45.455 0.00 0.00 0.00 2.41
85 86 2.262637 TGAGGGACGGATAGGTTTGTT 58.737 47.619 0.00 0.00 0.00 2.83
86 87 1.946984 TGAGGGACGGATAGGTTTGT 58.053 50.000 0.00 0.00 0.00 2.83
87 88 3.343941 TTTGAGGGACGGATAGGTTTG 57.656 47.619 0.00 0.00 0.00 2.93
88 89 4.018779 TGAATTTGAGGGACGGATAGGTTT 60.019 41.667 0.00 0.00 0.00 3.27
89 90 3.521937 TGAATTTGAGGGACGGATAGGTT 59.478 43.478 0.00 0.00 0.00 3.50
90 91 3.112263 TGAATTTGAGGGACGGATAGGT 58.888 45.455 0.00 0.00 0.00 3.08
91 92 3.838244 TGAATTTGAGGGACGGATAGG 57.162 47.619 0.00 0.00 0.00 2.57
92 93 4.572389 CACTTGAATTTGAGGGACGGATAG 59.428 45.833 0.00 0.00 0.00 2.08
93 94 4.513442 CACTTGAATTTGAGGGACGGATA 58.487 43.478 0.00 0.00 0.00 2.59
94 95 3.347216 CACTTGAATTTGAGGGACGGAT 58.653 45.455 0.00 0.00 0.00 4.18
95 96 2.552155 CCACTTGAATTTGAGGGACGGA 60.552 50.000 0.00 0.00 0.00 4.69
96 97 1.812571 CCACTTGAATTTGAGGGACGG 59.187 52.381 0.00 0.00 0.00 4.79
97 98 1.812571 CCCACTTGAATTTGAGGGACG 59.187 52.381 0.00 0.00 36.39 4.79
98 99 2.558359 CACCCACTTGAATTTGAGGGAC 59.442 50.000 13.43 0.00 37.49 4.46
99 100 2.490718 CCACCCACTTGAATTTGAGGGA 60.491 50.000 13.43 0.00 37.49 4.20
100 101 1.895131 CCACCCACTTGAATTTGAGGG 59.105 52.381 0.00 0.00 39.50 4.30
101 102 1.895131 CCCACCCACTTGAATTTGAGG 59.105 52.381 0.00 0.00 0.00 3.86
102 103 1.273327 GCCCACCCACTTGAATTTGAG 59.727 52.381 0.00 0.00 0.00 3.02
103 104 1.133199 AGCCCACCCACTTGAATTTGA 60.133 47.619 0.00 0.00 0.00 2.69
104 105 1.273327 GAGCCCACCCACTTGAATTTG 59.727 52.381 0.00 0.00 0.00 2.32
105 106 1.632589 GAGCCCACCCACTTGAATTT 58.367 50.000 0.00 0.00 0.00 1.82
106 107 0.251787 GGAGCCCACCCACTTGAATT 60.252 55.000 0.00 0.00 0.00 2.17
107 108 1.142688 AGGAGCCCACCCACTTGAAT 61.143 55.000 0.00 0.00 0.00 2.57
108 109 1.360393 AAGGAGCCCACCCACTTGAA 61.360 55.000 0.00 0.00 0.00 2.69
109 110 1.360393 AAAGGAGCCCACCCACTTGA 61.360 55.000 0.00 0.00 0.00 3.02
110 111 0.895559 GAAAGGAGCCCACCCACTTG 60.896 60.000 0.00 0.00 0.00 3.16
111 112 1.460699 GAAAGGAGCCCACCCACTT 59.539 57.895 0.00 0.00 0.00 3.16
112 113 2.539081 GGAAAGGAGCCCACCCACT 61.539 63.158 0.00 0.00 0.00 4.00
113 114 2.035783 GGAAAGGAGCCCACCCAC 59.964 66.667 0.00 0.00 0.00 4.61
114 115 3.264845 GGGAAAGGAGCCCACCCA 61.265 66.667 0.00 0.00 45.31 4.51
119 120 2.848678 AAATTAGGGGAAAGGAGCCC 57.151 50.000 0.00 0.00 45.25 5.19
120 121 4.833380 GGATAAAATTAGGGGAAAGGAGCC 59.167 45.833 0.00 0.00 0.00 4.70
121 122 5.454966 TGGATAAAATTAGGGGAAAGGAGC 58.545 41.667 0.00 0.00 0.00 4.70
122 123 9.301897 CTATTGGATAAAATTAGGGGAAAGGAG 57.698 37.037 0.00 0.00 0.00 3.69
123 124 9.020644 TCTATTGGATAAAATTAGGGGAAAGGA 57.979 33.333 0.00 0.00 0.00 3.36
124 125 9.654919 TTCTATTGGATAAAATTAGGGGAAAGG 57.345 33.333 0.00 0.00 0.00 3.11
126 127 9.654919 CCTTCTATTGGATAAAATTAGGGGAAA 57.345 33.333 0.00 0.00 0.00 3.13
127 128 9.020644 TCCTTCTATTGGATAAAATTAGGGGAA 57.979 33.333 0.00 0.00 0.00 3.97
128 129 8.590083 TCCTTCTATTGGATAAAATTAGGGGA 57.410 34.615 0.00 0.00 0.00 4.81
129 130 9.828691 ATTCCTTCTATTGGATAAAATTAGGGG 57.171 33.333 0.00 0.00 33.09 4.79
140 141 9.298250 CATTTGAGATGATTCCTTCTATTGGAT 57.702 33.333 0.00 0.00 33.09 3.41
141 142 8.277197 ACATTTGAGATGATTCCTTCTATTGGA 58.723 33.333 0.00 0.00 0.00 3.53
142 143 8.461249 ACATTTGAGATGATTCCTTCTATTGG 57.539 34.615 0.00 0.00 0.00 3.16
143 144 9.947669 GAACATTTGAGATGATTCCTTCTATTG 57.052 33.333 0.00 0.00 0.00 1.90
144 145 9.690913 TGAACATTTGAGATGATTCCTTCTATT 57.309 29.630 0.00 0.00 0.00 1.73
145 146 9.118300 GTGAACATTTGAGATGATTCCTTCTAT 57.882 33.333 0.00 0.00 0.00 1.98
146 147 8.324306 AGTGAACATTTGAGATGATTCCTTCTA 58.676 33.333 0.00 0.00 0.00 2.10
147 148 7.173722 AGTGAACATTTGAGATGATTCCTTCT 58.826 34.615 0.00 0.00 0.00 2.85
148 149 7.388460 AGTGAACATTTGAGATGATTCCTTC 57.612 36.000 0.00 0.00 0.00 3.46
149 150 8.900781 CATAGTGAACATTTGAGATGATTCCTT 58.099 33.333 0.00 0.00 0.00 3.36
150 151 7.501559 CCATAGTGAACATTTGAGATGATTCCT 59.498 37.037 0.00 0.00 0.00 3.36
151 152 7.284034 ACCATAGTGAACATTTGAGATGATTCC 59.716 37.037 0.00 0.00 0.00 3.01
152 153 8.218338 ACCATAGTGAACATTTGAGATGATTC 57.782 34.615 0.00 0.00 0.00 2.52
153 154 8.585471 AACCATAGTGAACATTTGAGATGATT 57.415 30.769 0.00 0.00 0.00 2.57
154 155 7.284034 GGAACCATAGTGAACATTTGAGATGAT 59.716 37.037 0.00 0.00 0.00 2.45
155 156 6.599244 GGAACCATAGTGAACATTTGAGATGA 59.401 38.462 0.00 0.00 0.00 2.92
156 157 6.457392 CGGAACCATAGTGAACATTTGAGATG 60.457 42.308 0.00 0.00 0.00 2.90
157 158 5.586243 CGGAACCATAGTGAACATTTGAGAT 59.414 40.000 0.00 0.00 0.00 2.75
158 159 4.935205 CGGAACCATAGTGAACATTTGAGA 59.065 41.667 0.00 0.00 0.00 3.27
159 160 4.695455 ACGGAACCATAGTGAACATTTGAG 59.305 41.667 0.00 0.00 0.00 3.02
160 161 4.647611 ACGGAACCATAGTGAACATTTGA 58.352 39.130 0.00 0.00 0.00 2.69
161 162 4.142687 GGACGGAACCATAGTGAACATTTG 60.143 45.833 0.00 0.00 0.00 2.32
162 163 4.007659 GGACGGAACCATAGTGAACATTT 58.992 43.478 0.00 0.00 0.00 2.32
163 164 3.606687 GGACGGAACCATAGTGAACATT 58.393 45.455 0.00 0.00 0.00 2.71
164 165 2.093128 GGGACGGAACCATAGTGAACAT 60.093 50.000 0.00 0.00 0.00 2.71
165 166 1.276989 GGGACGGAACCATAGTGAACA 59.723 52.381 0.00 0.00 0.00 3.18
166 167 1.276989 TGGGACGGAACCATAGTGAAC 59.723 52.381 0.00 0.00 31.83 3.18
167 168 1.646912 TGGGACGGAACCATAGTGAA 58.353 50.000 0.00 0.00 31.83 3.18
168 169 1.646912 TTGGGACGGAACCATAGTGA 58.353 50.000 0.00 0.00 37.93 3.41
169 170 2.710096 ATTGGGACGGAACCATAGTG 57.290 50.000 0.00 0.00 37.93 2.74
170 171 2.844348 AGAATTGGGACGGAACCATAGT 59.156 45.455 0.00 0.00 37.93 2.12
171 172 3.560636 AGAATTGGGACGGAACCATAG 57.439 47.619 0.00 0.00 37.93 2.23
172 173 4.310022 AAAGAATTGGGACGGAACCATA 57.690 40.909 0.00 0.00 37.93 2.74
173 174 2.899303 AAGAATTGGGACGGAACCAT 57.101 45.000 0.00 0.00 37.93 3.55
174 175 2.668144 AAAGAATTGGGACGGAACCA 57.332 45.000 0.00 0.00 35.88 3.67
175 176 5.826208 ACATATAAAGAATTGGGACGGAACC 59.174 40.000 0.00 0.00 0.00 3.62
176 177 6.937436 ACATATAAAGAATTGGGACGGAAC 57.063 37.500 0.00 0.00 0.00 3.62
177 178 7.499895 GGTTACATATAAAGAATTGGGACGGAA 59.500 37.037 0.00 0.00 0.00 4.30
178 179 6.993902 GGTTACATATAAAGAATTGGGACGGA 59.006 38.462 0.00 0.00 0.00 4.69
179 180 6.996282 AGGTTACATATAAAGAATTGGGACGG 59.004 38.462 0.00 0.00 0.00 4.79
180 181 7.931948 AGAGGTTACATATAAAGAATTGGGACG 59.068 37.037 0.00 0.00 0.00 4.79
181 182 9.274206 GAGAGGTTACATATAAAGAATTGGGAC 57.726 37.037 0.00 0.00 0.00 4.46
182 183 8.437575 GGAGAGGTTACATATAAAGAATTGGGA 58.562 37.037 0.00 0.00 0.00 4.37
183 184 8.440771 AGGAGAGGTTACATATAAAGAATTGGG 58.559 37.037 0.00 0.00 0.00 4.12
184 185 9.495572 GAGGAGAGGTTACATATAAAGAATTGG 57.504 37.037 0.00 0.00 0.00 3.16
189 190 9.268282 ACTTTGAGGAGAGGTTACATATAAAGA 57.732 33.333 0.00 0.00 0.00 2.52
190 191 9.319143 CACTTTGAGGAGAGGTTACATATAAAG 57.681 37.037 0.00 0.00 0.00 1.85
191 192 8.822805 ACACTTTGAGGAGAGGTTACATATAAA 58.177 33.333 0.00 0.00 0.00 1.40
192 193 8.375493 ACACTTTGAGGAGAGGTTACATATAA 57.625 34.615 0.00 0.00 0.00 0.98
193 194 7.618117 TGACACTTTGAGGAGAGGTTACATATA 59.382 37.037 0.00 0.00 0.00 0.86
194 195 6.440647 TGACACTTTGAGGAGAGGTTACATAT 59.559 38.462 0.00 0.00 0.00 1.78
195 196 5.778241 TGACACTTTGAGGAGAGGTTACATA 59.222 40.000 0.00 0.00 0.00 2.29
196 197 4.593206 TGACACTTTGAGGAGAGGTTACAT 59.407 41.667 0.00 0.00 0.00 2.29
197 198 3.964688 TGACACTTTGAGGAGAGGTTACA 59.035 43.478 0.00 0.00 0.00 2.41
198 199 4.602340 TGACACTTTGAGGAGAGGTTAC 57.398 45.455 0.00 0.00 0.00 2.50
199 200 4.654262 AGTTGACACTTTGAGGAGAGGTTA 59.346 41.667 0.00 0.00 0.00 2.85
200 201 3.456277 AGTTGACACTTTGAGGAGAGGTT 59.544 43.478 0.00 0.00 0.00 3.50
201 202 3.041946 AGTTGACACTTTGAGGAGAGGT 58.958 45.455 0.00 0.00 0.00 3.85
202 203 3.556004 GGAGTTGACACTTTGAGGAGAGG 60.556 52.174 0.00 0.00 31.22 3.69
203 204 3.556004 GGGAGTTGACACTTTGAGGAGAG 60.556 52.174 0.00 0.00 31.22 3.20
204 205 2.368875 GGGAGTTGACACTTTGAGGAGA 59.631 50.000 0.00 0.00 31.22 3.71
205 206 2.772287 GGGAGTTGACACTTTGAGGAG 58.228 52.381 0.00 0.00 31.22 3.69
206 207 1.070134 CGGGAGTTGACACTTTGAGGA 59.930 52.381 0.00 0.00 31.22 3.71
207 208 1.512926 CGGGAGTTGACACTTTGAGG 58.487 55.000 0.00 0.00 31.22 3.86
208 209 0.868406 GCGGGAGTTGACACTTTGAG 59.132 55.000 0.00 0.00 31.22 3.02
209 210 0.534203 GGCGGGAGTTGACACTTTGA 60.534 55.000 0.00 0.00 31.22 2.69
210 211 0.817634 TGGCGGGAGTTGACACTTTG 60.818 55.000 0.00 0.00 31.22 2.77
211 212 0.110486 ATGGCGGGAGTTGACACTTT 59.890 50.000 0.00 0.00 31.22 2.66
212 213 0.110486 AATGGCGGGAGTTGACACTT 59.890 50.000 0.00 0.00 31.22 3.16
213 214 0.981183 TAATGGCGGGAGTTGACACT 59.019 50.000 0.00 0.00 35.17 3.55
214 215 2.038387 ATAATGGCGGGAGTTGACAC 57.962 50.000 0.00 0.00 0.00 3.67
215 216 2.769663 AGTATAATGGCGGGAGTTGACA 59.230 45.455 0.00 0.00 0.00 3.58
216 217 3.470645 AGTATAATGGCGGGAGTTGAC 57.529 47.619 0.00 0.00 0.00 3.18
217 218 4.196193 CAAAGTATAATGGCGGGAGTTGA 58.804 43.478 0.00 0.00 0.00 3.18
218 219 3.945285 ACAAAGTATAATGGCGGGAGTTG 59.055 43.478 0.00 0.00 0.00 3.16
219 220 4.230745 ACAAAGTATAATGGCGGGAGTT 57.769 40.909 0.00 0.00 0.00 3.01
220 221 3.926058 ACAAAGTATAATGGCGGGAGT 57.074 42.857 0.00 0.00 0.00 3.85
221 222 3.945285 ACAACAAAGTATAATGGCGGGAG 59.055 43.478 0.00 0.00 0.00 4.30
222 223 3.692101 CACAACAAAGTATAATGGCGGGA 59.308 43.478 0.00 0.00 0.00 5.14
223 224 3.692101 TCACAACAAAGTATAATGGCGGG 59.308 43.478 0.00 0.00 0.00 6.13
224 225 4.955925 TCACAACAAAGTATAATGGCGG 57.044 40.909 0.00 0.00 0.00 6.13
225 226 8.128582 ACATATTCACAACAAAGTATAATGGCG 58.871 33.333 0.00 0.00 0.00 5.69
312 313 9.828039 TCGACACTCTAAACTACATCTATAGAA 57.172 33.333 6.52 0.00 0.00 2.10
313 314 9.999660 ATCGACACTCTAAACTACATCTATAGA 57.000 33.333 4.57 4.57 0.00 1.98
316 317 9.121658 TGAATCGACACTCTAAACTACATCTAT 57.878 33.333 0.00 0.00 0.00 1.98
317 318 8.396390 GTGAATCGACACTCTAAACTACATCTA 58.604 37.037 0.00 0.00 37.73 1.98
318 319 7.121463 AGTGAATCGACACTCTAAACTACATCT 59.879 37.037 2.98 0.00 46.36 2.90
319 320 7.251994 AGTGAATCGACACTCTAAACTACATC 58.748 38.462 2.98 0.00 46.36 3.06
320 321 7.159322 AGTGAATCGACACTCTAAACTACAT 57.841 36.000 2.98 0.00 46.36 2.29
321 322 6.570672 AGTGAATCGACACTCTAAACTACA 57.429 37.500 2.98 0.00 46.36 2.74
332 333 4.410492 AGCAAAATGAGTGAATCGACAC 57.590 40.909 0.00 0.00 40.60 3.67
333 334 4.377328 CGAAGCAAAATGAGTGAATCGACA 60.377 41.667 0.00 0.00 31.33 4.35
334 335 4.084507 CGAAGCAAAATGAGTGAATCGAC 58.915 43.478 0.00 0.00 31.33 4.20
335 336 3.745975 ACGAAGCAAAATGAGTGAATCGA 59.254 39.130 0.00 0.00 32.95 3.59
336 337 4.070581 ACGAAGCAAAATGAGTGAATCG 57.929 40.909 0.00 0.00 34.08 3.34
337 338 5.015733 CGTACGAAGCAAAATGAGTGAATC 58.984 41.667 10.44 0.00 0.00 2.52
338 339 4.451096 ACGTACGAAGCAAAATGAGTGAAT 59.549 37.500 24.41 0.00 0.00 2.57
339 340 3.805422 ACGTACGAAGCAAAATGAGTGAA 59.195 39.130 24.41 0.00 0.00 3.18
340 341 3.386486 ACGTACGAAGCAAAATGAGTGA 58.614 40.909 24.41 0.00 0.00 3.41
341 342 3.788434 ACGTACGAAGCAAAATGAGTG 57.212 42.857 24.41 0.00 0.00 3.51
342 343 3.558418 ACAACGTACGAAGCAAAATGAGT 59.442 39.130 24.41 0.00 0.00 3.41
343 344 4.128554 ACAACGTACGAAGCAAAATGAG 57.871 40.909 24.41 0.00 0.00 2.90
344 345 3.059461 GGACAACGTACGAAGCAAAATGA 60.059 43.478 24.41 0.00 0.00 2.57
345 346 3.223157 GGACAACGTACGAAGCAAAATG 58.777 45.455 24.41 9.38 0.00 2.32
346 347 2.873472 TGGACAACGTACGAAGCAAAAT 59.127 40.909 24.41 0.00 0.00 1.82
347 348 2.277969 TGGACAACGTACGAAGCAAAA 58.722 42.857 24.41 0.00 0.00 2.44
348 349 1.937278 TGGACAACGTACGAAGCAAA 58.063 45.000 24.41 0.00 0.00 3.68
349 350 2.157834 ATGGACAACGTACGAAGCAA 57.842 45.000 24.41 2.98 0.00 3.91
350 351 3.513680 ATATGGACAACGTACGAAGCA 57.486 42.857 24.41 8.18 0.00 3.91
351 352 5.954434 TTAATATGGACAACGTACGAAGC 57.046 39.130 24.41 7.89 0.00 3.86
352 353 8.814235 AGATTTTAATATGGACAACGTACGAAG 58.186 33.333 24.41 15.71 0.00 3.79
353 354 8.706492 AGATTTTAATATGGACAACGTACGAA 57.294 30.769 24.41 0.02 0.00 3.85
354 355 8.706492 AAGATTTTAATATGGACAACGTACGA 57.294 30.769 24.41 0.00 0.00 3.43
383 384 9.396022 TCTCTTTGTTTCTAAAATGAAGTCTGT 57.604 29.630 0.00 0.00 0.00 3.41
384 385 9.875675 CTCTCTTTGTTTCTAAAATGAAGTCTG 57.124 33.333 0.00 0.00 0.00 3.51
385 386 9.620259 ACTCTCTTTGTTTCTAAAATGAAGTCT 57.380 29.630 0.00 0.00 0.00 3.24
402 403 9.666626 CCGTTCTAGTACAATATACTCTCTTTG 57.333 37.037 0.00 0.00 0.00 2.77
403 404 9.624373 TCCGTTCTAGTACAATATACTCTCTTT 57.376 33.333 0.00 0.00 0.00 2.52
404 405 9.275398 CTCCGTTCTAGTACAATATACTCTCTT 57.725 37.037 0.00 0.00 0.00 2.85
405 406 7.879160 CCTCCGTTCTAGTACAATATACTCTCT 59.121 40.741 0.00 0.00 0.00 3.10
406 407 7.119553 CCCTCCGTTCTAGTACAATATACTCTC 59.880 44.444 0.00 0.00 0.00 3.20
407 408 6.941436 CCCTCCGTTCTAGTACAATATACTCT 59.059 42.308 0.00 0.00 0.00 3.24
408 409 6.939163 TCCCTCCGTTCTAGTACAATATACTC 59.061 42.308 0.00 0.00 0.00 2.59
409 410 6.845908 TCCCTCCGTTCTAGTACAATATACT 58.154 40.000 0.00 0.00 0.00 2.12
410 411 6.714356 ACTCCCTCCGTTCTAGTACAATATAC 59.286 42.308 0.00 0.00 0.00 1.47
411 412 6.845908 ACTCCCTCCGTTCTAGTACAATATA 58.154 40.000 0.00 0.00 0.00 0.86
412 413 5.703310 ACTCCCTCCGTTCTAGTACAATAT 58.297 41.667 0.00 0.00 0.00 1.28
413 414 5.121380 ACTCCCTCCGTTCTAGTACAATA 57.879 43.478 0.00 0.00 0.00 1.90
414 415 3.978610 ACTCCCTCCGTTCTAGTACAAT 58.021 45.455 0.00 0.00 0.00 2.71
415 416 3.446442 ACTCCCTCCGTTCTAGTACAA 57.554 47.619 0.00 0.00 0.00 2.41
416 417 3.683847 GCTACTCCCTCCGTTCTAGTACA 60.684 52.174 0.00 0.00 0.00 2.90
417 418 2.877786 GCTACTCCCTCCGTTCTAGTAC 59.122 54.545 0.00 0.00 0.00 2.73
426 427 0.179134 CTGAAACGCTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
427 428 0.896226 ACTGAAACGCTACTCCCTCC 59.104 55.000 0.00 0.00 0.00 4.30
444 445 5.607477 TCTTTCTCGTGGATGTAACAAACT 58.393 37.500 0.00 0.00 0.00 2.66
456 457 4.991056 TGACTCTTGATTTCTTTCTCGTGG 59.009 41.667 0.00 0.00 0.00 4.94
459 460 6.090628 CCTTCTGACTCTTGATTTCTTTCTCG 59.909 42.308 0.00 0.00 0.00 4.04
470 474 3.492656 CGTGGTTTCCTTCTGACTCTTGA 60.493 47.826 0.00 0.00 0.00 3.02
476 480 2.223971 TGTCTCGTGGTTTCCTTCTGAC 60.224 50.000 0.00 0.00 0.00 3.51
480 484 2.234300 TGTGTCTCGTGGTTTCCTTC 57.766 50.000 0.00 0.00 0.00 3.46
484 488 0.163788 CGCATGTGTCTCGTGGTTTC 59.836 55.000 0.00 0.00 33.96 2.78
556 564 6.266330 GGCCCAAAATCTAGAGAGCATTATTT 59.734 38.462 0.00 0.00 0.00 1.40
560 568 3.203934 AGGCCCAAAATCTAGAGAGCATT 59.796 43.478 0.00 0.00 0.00 3.56
561 569 2.782341 AGGCCCAAAATCTAGAGAGCAT 59.218 45.455 0.00 0.00 0.00 3.79
563 571 2.092699 ACAGGCCCAAAATCTAGAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
564 572 3.922171 ACAGGCCCAAAATCTAGAGAG 57.078 47.619 0.00 0.00 0.00 3.20
566 574 2.939103 CGAACAGGCCCAAAATCTAGAG 59.061 50.000 0.00 0.00 0.00 2.43
567 575 2.304761 ACGAACAGGCCCAAAATCTAGA 59.695 45.455 0.00 0.00 0.00 2.43
568 576 2.711542 ACGAACAGGCCCAAAATCTAG 58.288 47.619 0.00 0.00 0.00 2.43
569 577 2.871096 ACGAACAGGCCCAAAATCTA 57.129 45.000 0.00 0.00 0.00 1.98
570 578 2.304761 TCTACGAACAGGCCCAAAATCT 59.695 45.455 0.00 0.00 0.00 2.40
571 579 2.706890 TCTACGAACAGGCCCAAAATC 58.293 47.619 0.00 0.00 0.00 2.17
572 580 2.871096 TCTACGAACAGGCCCAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
751 767 1.671901 GCTCTGAGGAACGGGAGGAG 61.672 65.000 6.83 0.00 0.00 3.69
764 780 1.888436 AACAATCCTCGGCGCTCTGA 61.888 55.000 7.64 1.98 0.00 3.27
802 818 1.301677 GGAGGGCAGAGCGAAAACAG 61.302 60.000 0.00 0.00 0.00 3.16
841 857 2.352422 CTAGGCTGCCCTTGCACA 59.648 61.111 16.57 0.00 44.23 4.57
856 872 4.451150 CGCCGCCAACTGGAGCTA 62.451 66.667 0.00 0.00 37.39 3.32
960 976 1.108132 GCTTATCGGTCCCGGAGAGT 61.108 60.000 0.73 0.00 40.25 3.24
992 1008 3.736100 CCTGCAACATCGCGGCAA 61.736 61.111 6.13 0.00 37.06 4.52
1294 1324 3.118445 TCTCATCCATGGTGCGAACAATA 60.118 43.478 12.58 0.00 0.00 1.90
1382 1412 6.420913 ACCTAATAACCAATCGTCAGCTAT 57.579 37.500 0.00 0.00 0.00 2.97
1636 1686 4.505742 GGTGTCTGGTCTCTCCTTTTTCAT 60.506 45.833 0.00 0.00 37.07 2.57
1643 1693 0.780637 TCTGGTGTCTGGTCTCTCCT 59.219 55.000 0.00 0.00 37.07 3.69
2064 2116 4.764679 TGTGCAACTACAACATGGAATC 57.235 40.909 0.00 0.00 38.04 2.52
2433 2485 8.863872 AGCAAATATACTTAGAACCAACAGTT 57.136 30.769 0.00 0.00 43.07 3.16
2643 2697 5.049405 AGTGCAAAGATTCAACTCGGTAAAG 60.049 40.000 0.00 0.00 0.00 1.85
3118 3172 1.367471 CTTCACTGCTCACCACGGA 59.633 57.895 0.00 0.00 0.00 4.69
3162 3216 3.750371 TGAGATCAACCCATGAAAACGT 58.250 40.909 0.00 0.00 42.54 3.99
3827 3883 3.696051 CCCCATGGAGATACAAAGTGTTG 59.304 47.826 15.22 0.00 40.84 3.33
3960 4016 6.238566 GCTAATGCATGTGAGTATGTGACATT 60.239 38.462 2.29 0.00 39.41 2.71
4503 4559 4.529897 CTCATCCCATGGTTCAAGATCAA 58.470 43.478 11.73 0.00 0.00 2.57
5314 5370 7.589958 AATTATAGGGCAGACTATCGATAGG 57.410 40.000 30.71 17.30 35.41 2.57
5381 5437 2.086869 CTACTCAACAACAGGGCATGG 58.913 52.381 3.46 0.00 0.00 3.66
6444 7254 6.813649 GCCAGATAAGATATGCAGAAATCGTA 59.186 38.462 0.00 0.00 0.00 3.43
6654 7466 7.414098 GCAATGGAAATTACACTCAACTATCGT 60.414 37.037 0.00 0.00 0.00 3.73
6988 7800 2.936202 ACAGCAGAAATTGTGTCCACT 58.064 42.857 0.00 0.00 0.00 4.00
7502 8315 6.206634 CCTTTGCTTTAATCAACCTCAGTGTA 59.793 38.462 0.00 0.00 0.00 2.90
7824 8640 6.204688 TGTCATCAGTTACCATGAAGTGAAAC 59.795 38.462 8.32 9.72 41.06 2.78
7954 8771 1.045407 ACGTGCTTAGACTTGGACCA 58.955 50.000 0.00 0.00 0.00 4.02
8032 9141 4.398988 ACAATGCACAATTCACGTATGGAT 59.601 37.500 0.00 0.00 0.00 3.41
8138 9249 0.105778 GTGTAGCTCCTCAGATGCCC 59.894 60.000 0.00 0.00 0.00 5.36
8179 9290 2.025887 AGCTTCCTACCAGATGTTTGGG 60.026 50.000 0.00 0.00 42.76 4.12
8250 9386 0.455633 CAAGCCTTCACATTCGCTGC 60.456 55.000 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.