AutoCloner

Multiple sequence alignment - TraesCS7A01G445300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G445300	chr7A	100.000	2303	0	0	1	2303	639885582	639883280	0.000000e+00	4253.0
1	TraesCS7A01G445300	chr7A	94.878	1347	57	2	653	1999	439031051	439032385	0.000000e+00	2095.0
2	TraesCS7A01G445300	chr7A	95.477	619	26	2	1	619	439030199	439030815	0.000000e+00	987.0
3	TraesCS7A01G445300	chr7A	100.000	86	0	0	2218	2303	548296271	548296186	2.370000e-35	159.0
4	TraesCS7A01G445300	chr7A	98.837	86	1	0	2218	2303	548289420	548289335	1.100000e-33	154.0
5	TraesCS7A01G445300	chr3D	93.825	1587	71	10	653	2218	143483369	143481789	0.000000e+00	2362.0
6	TraesCS7A01G445300	chr3D	97.017	637	18	1	6	642	143485043	143484408	0.000000e+00	1070.0
7	TraesCS7A01G445300	chr3D	90.222	225	15	3	401	618	43023653	43023429	1.040000e-73	287.0
8	TraesCS7A01G445300	chr5D	94.659	1348	50	9	653	1999	462907846	462909172	0.000000e+00	2071.0
9	TraesCS7A01G445300	chr1D	93.579	1355	65	7	653	2002	235547596	235546259	0.000000e+00	2001.0
10	TraesCS7A01G445300	chr1D	89.916	238	8	1	1997	2218	235546188	235545951	2.240000e-75	292.0
11	TraesCS7A01G445300	chr1B	92.364	1362	65	18	653	2002	253825480	253824146	0.000000e+00	1903.0
12	TraesCS7A01G445300	chr1B	91.304	299	23	3	1	297	504630869	504630572	2.760000e-109	405.0
13	TraesCS7A01G445300	chr1B	90.530	264	14	1	1739	2002	8359731	8359479	2.830000e-89	339.0
14	TraesCS7A01G445300	chr1B	87.815	238	8	5	1997	2218	253824075	253823843	2.270000e-65	259.0
15	TraesCS7A01G445300	chr1B	86.975	238	15	8	1997	2218	504627967	504627730	1.060000e-63	254.0
16	TraesCS7A01G445300	chr1B	100.000	28	0	0	653	680	578103584	578103611	4.000000e-03	52.8
17	TraesCS7A01G445300	chr2B	91.898	1333	78	13	674	1999	13184003	13185312	0.000000e+00	1836.0
18	TraesCS7A01G445300	chr2B	88.629	299	31	3	1	297	362586021	362585724	6.050000e-96	361.0
19	TraesCS7A01G445300	chr2B	95.263	190	7	1	453	642	13183389	13183576	1.340000e-77	300.0
20	TraesCS7A01G445300	chr2B	88.655	238	11	3	1997	2218	362583135	362582898	2.250000e-70	276.0
21	TraesCS7A01G445300	chr2B	88.559	236	13	1	1997	2218	514618619	514618384	8.110000e-70	274.0
22	TraesCS7A01G445300	chr2A	93.526	1143	53	6	861	1999	441110111	441111236	0.000000e+00	1681.0
23	TraesCS7A01G445300	chr2A	88.889	243	11	1	1997	2223	23539382	23539140	3.740000e-73	285.0
24	TraesCS7A01G445300	chr2A	89.076	238	10	2	1997	2218	441111309	441111546	4.840000e-72	281.0
25	TraesCS7A01G445300	chr2A	95.876	97	3	1	2208	2303	526145584	526145488	3.060000e-34	156.0
26	TraesCS7A01G445300	chr4A	93.176	1143	57	6	864	2002	281593802	281592677	0.000000e+00	1659.0
27	TraesCS7A01G445300	chr4A	89.076	238	10	1	1997	2218	617121534	617121771	4.840000e-72	281.0
28	TraesCS7A01G445300	chr4A	95.876	97	3	1	2208	2303	57549951	57549855	3.060000e-34	156.0
29	TraesCS7A01G445300	chr5B	93.001	1143	54	8	861	1999	89745418	89746538	0.000000e+00	1644.0
30	TraesCS7A01G445300	chr7D	92.832	1144	50	11	864	2002	635929327	635928211	0.000000e+00	1629.0
31	TraesCS7A01G445300	chr7D	81.010	416	49	16	1591	2002	597414341	597413952	1.030000e-78	303.0
32	TraesCS7A01G445300	chr7D	89.916	238	8	1	1997	2218	635928139	635927902	2.240000e-75	292.0
33	TraesCS7A01G445300	chr7D	96.774	31	1	0	653	683	635929356	635929326	4.000000e-03	52.8
34	TraesCS7A01G445300	chr7B	94.168	703	27	4	1297	1999	634824607	634825295	0.000000e+00	1059.0
35	TraesCS7A01G445300	chr7B	88.017	242	9	3	1997	2219	634825366	634825606	3.770000e-68	268.0
36	TraesCS7A01G445300	chr7B	86.957	161	5	2	1997	2141	691850803	691850963	1.420000e-37	167.0
37	TraesCS7A01G445300	chr7B	98.630	73	0	1	653	724	634824536	634824608	6.680000e-26	128.0
38	TraesCS7A01G445300	chr6D	91.842	760	42	5	1243	2002	298130733	298129994	0.000000e+00	1042.0
39	TraesCS7A01G445300	chr6D	94.712	643	33	1	1	642	298141594	298140952	0.000000e+00	998.0
40	TraesCS7A01G445300	chr6D	88.655	238	11	2	1997	2218	281542915	281542678	2.250000e-70	276.0
41	TraesCS7A01G445300	chr6D	94.937	79	4	0	1997	2075	298129929	298129851	8.640000e-25	124.0
42	TraesCS7A01G445300	chr3B	93.388	242	16	0	401	642	66955596	66955355	2.180000e-95	359.0
43	TraesCS7A01G445300	chr3A	88.525	305	18	10	1	289	699800988	699801291	1.010000e-93	353.0
44	TraesCS7A01G445300	chr3A	90.400	250	16	5	401	642	55047643	55047394	2.850000e-84	322.0
45	TraesCS7A01G445300	chr3A	100.000	86	0	0	2218	2303	473672721	473672636	2.370000e-35	159.0
46	TraesCS7A01G445300	chr3A	100.000	86	0	0	2218	2303	473679577	473679492	2.370000e-35	159.0
47	TraesCS7A01G445300	chr3A	95.876	97	3	1	2208	2303	123483247	123483151	3.060000e-34	156.0
48	TraesCS7A01G445300	chr3A	94.898	98	3	1	2208	2303	120306669	120306572	3.960000e-33	152.0
49	TraesCS7A01G445300	chr4B	95.238	147	6	1	2073	2218	592724481	592724335	4.950000e-57	231.0
50	TraesCS7A01G445300	chr6A	95.876	97	3	1	2208	2303	527825095	527824999	3.060000e-34	156.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G445300	chr7A	639883280	639885582	2302	True	4253.000000	4253	100.0000	1	2303	1	chr7A.!!$R3	2302
1	TraesCS7A01G445300	chr7A	439030199	439032385	2186	False	1541.000000	2095	95.1775	1	1999	2	chr7A.!!$F1	1998
2	TraesCS7A01G445300	chr3D	143481789	143485043	3254	True	1716.000000	2362	95.4210	6	2218	2	chr3D.!!$R2	2212
3	TraesCS7A01G445300	chr5D	462907846	462909172	1326	False	2071.000000	2071	94.6590	653	1999	1	chr5D.!!$F1	1346
4	TraesCS7A01G445300	chr1D	235545951	235547596	1645	True	1146.500000	2001	91.7475	653	2218	2	chr1D.!!$R1	1565
5	TraesCS7A01G445300	chr1B	253823843	253825480	1637	True	1081.000000	1903	90.0895	653	2218	2	chr1B.!!$R2	1565
6	TraesCS7A01G445300	chr1B	504627730	504630869	3139	True	329.500000	405	89.1395	1	2218	2	chr1B.!!$R3	2217
7	TraesCS7A01G445300	chr2B	13183389	13185312	1923	False	1068.000000	1836	93.5805	453	1999	2	chr2B.!!$F1	1546
8	TraesCS7A01G445300	chr2B	362582898	362586021	3123	True	318.500000	361	88.6420	1	2218	2	chr2B.!!$R2	2217
9	TraesCS7A01G445300	chr2A	441110111	441111546	1435	False	981.000000	1681	91.3010	861	2218	2	chr2A.!!$F1	1357
10	TraesCS7A01G445300	chr4A	281592677	281593802	1125	True	1659.000000	1659	93.1760	864	2002	1	chr4A.!!$R2	1138
11	TraesCS7A01G445300	chr5B	89745418	89746538	1120	False	1644.000000	1644	93.0010	861	1999	1	chr5B.!!$F1	1138
12	TraesCS7A01G445300	chr7D	635927902	635929356	1454	True	657.933333	1629	93.1740	653	2218	3	chr7D.!!$R2	1565
13	TraesCS7A01G445300	chr7B	634824536	634825606	1070	False	485.000000	1059	93.6050	653	2219	3	chr7B.!!$F2	1566
14	TraesCS7A01G445300	chr6D	298140952	298141594	642	True	998.000000	998	94.7120	1	642	1	chr6D.!!$R2	641
15	TraesCS7A01G445300	chr6D	298129851	298130733	882	True	583.000000	1042	93.3895	1243	2075	2	chr6D.!!$R3	832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
702	2008	0.482446	ATGGAACTTTGACCCTGCCA	59.518	50.0	0.0	0.0	0.0	4.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1784	5275	0.03601	CCTCCACATTGGCGACTTCT	60.036	55.0	0.0	0.0	37.47	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	48	1.062121	CCATCCTCTCCCACCTCCTTA	60.062	57.143	0.00	0.00	0.00	2.69
176	178	4.740822	GACGGGGCAGCCACCATT	62.741	66.667	15.19	1.81	0.00	3.16
188	190	1.687612	CACCATTGAGCTCACCCCT	59.312	57.895	18.03	0.00	0.00	4.79
263	265	0.755686	GCAGGGAGACGAGGATTGAT	59.244	55.000	0.00	0.00	0.00	2.57
385	388	0.634465	GTCTCCTCCCTCTCCCTCTT	59.366	60.000	0.00	0.00	0.00	2.85
451	454	7.220108	GCTTTAGTGTATTTTAAAAGATGCGGG	59.780	37.037	6.79	0.00	30.44	6.13
555	558	0.973632	TGTTGTCCGCACTCTGGTAT	59.026	50.000	0.00	0.00	0.00	2.73
643	646	6.607004	TCTTTCCCTTAGAGTAGGACTTTG	57.393	41.667	0.00	0.00	37.50	2.77
648	651	4.530946	CCCTTAGAGTAGGACTTTGTGGAA	59.469	45.833	0.00	0.00	37.50	3.53
650	653	5.932883	CCTTAGAGTAGGACTTTGTGGAAAC	59.067	44.000	0.00	0.00	37.50	2.78
651	654	6.239629	CCTTAGAGTAGGACTTTGTGGAAACT	60.240	42.308	0.00	0.00	37.50	2.66
702	2008	0.482446	ATGGAACTTTGACCCTGCCA	59.518	50.000	0.00	0.00	0.00	4.92
944	2250	6.321181	TCTTGGTTTGCTTGACTCTAATTGTT	59.679	34.615	0.00	0.00	0.00	2.83
1042	2805	9.934190	CTTTTATTTTTGAACTGGGACAAAATG	57.066	29.630	0.00	0.00	42.67	2.32
1418	4898	5.874261	GCTGGCATTTGTTGTTACCAAATAT	59.126	36.000	0.00	0.00	39.77	1.28
1751	5242	3.819877	GAAGTCCGGTGGCCACGTT	62.820	63.158	29.08	16.37	0.00	3.99
1766	5257	1.070821	ACGTTGCACAGATGATCGTG	58.929	50.000	11.28	11.28	36.18	4.35
1784	5275	2.032634	GCAGGTGATTTCGACGCCA	61.033	57.895	6.85	0.00	39.99	5.69
1818	5309	4.680537	AGGACCTCGACGCCACCT	62.681	66.667	0.00	0.00	0.00	4.00
1830	5321	3.068691	CCACCTTCCGCGAGAGGA	61.069	66.667	27.30	6.71	38.79	3.71
1895	5386	3.626930	ACATCTAGAGAGGTGGTCTGTC	58.373	50.000	0.00	0.00	38.22	3.51
1898	5389	5.044772	ACATCTAGAGAGGTGGTCTGTCTAA	60.045	44.000	0.00	0.00	44.50	2.10
1946	5441	3.125146	CACCTTACGATGATGGTTGTGTG	59.875	47.826	0.00	0.00	0.00	3.82
1947	5442	3.007506	ACCTTACGATGATGGTTGTGTGA	59.992	43.478	0.00	0.00	0.00	3.58
1948	5443	4.191544	CCTTACGATGATGGTTGTGTGAT	58.808	43.478	0.00	0.00	0.00	3.06
1949	5444	4.034394	CCTTACGATGATGGTTGTGTGATG	59.966	45.833	0.00	0.00	0.00	3.07
1950	5445	3.057969	ACGATGATGGTTGTGTGATGT	57.942	42.857	0.00	0.00	0.00	3.06
1951	5446	3.411446	ACGATGATGGTTGTGTGATGTT	58.589	40.909	0.00	0.00	0.00	2.71
1952	5447	3.820467	ACGATGATGGTTGTGTGATGTTT	59.180	39.130	0.00	0.00	0.00	2.83
1953	5448	4.160594	CGATGATGGTTGTGTGATGTTTG	58.839	43.478	0.00	0.00	0.00	2.93
1954	5449	4.320421	CGATGATGGTTGTGTGATGTTTGT	60.320	41.667	0.00	0.00	0.00	2.83
1955	5450	4.304537	TGATGGTTGTGTGATGTTTGTG	57.695	40.909	0.00	0.00	0.00	3.33
1956	5451	3.698539	TGATGGTTGTGTGATGTTTGTGT	59.301	39.130	0.00	0.00	0.00	3.72
2007	5699	9.603921	GAGATAGTTCTGTGAGTTAGTAGTAGT	57.396	37.037	0.00	0.00	30.30	2.73
2056	5748	4.848357	AGTTAGGTTAGTAGTAGCGTGGA	58.152	43.478	0.00	0.00	0.00	4.02
2219	5930	5.012354	TGGTAGTGTTTTTCCTAGTAGTGGG	59.988	44.000	0.00	0.00	0.00	4.61
2220	5931	4.017177	AGTGTTTTTCCTAGTAGTGGGC	57.983	45.455	0.00	0.00	0.00	5.36
2221	5932	2.740447	GTGTTTTTCCTAGTAGTGGGCG	59.260	50.000	0.00	0.00	0.00	6.13
2222	5933	1.736126	GTTTTTCCTAGTAGTGGGCGC	59.264	52.381	0.00	0.00	0.00	6.53
2223	5934	0.251073	TTTTCCTAGTAGTGGGCGCC	59.749	55.000	21.18	21.18	0.00	6.53
2224	5935	1.619807	TTTCCTAGTAGTGGGCGCCC	61.620	60.000	39.40	39.40	0.00	6.13
2225	5936	2.762459	CCTAGTAGTGGGCGCCCA	60.762	66.667	44.23	44.23	45.02	5.36
2234	5945	3.770040	GGGCGCCCAAAACCCATC	61.770	66.667	40.73	8.62	43.64	3.51
2235	5946	2.679996	GGCGCCCAAAACCCATCT	60.680	61.111	18.11	0.00	0.00	2.90
2236	5947	1.379309	GGCGCCCAAAACCCATCTA	60.379	57.895	18.11	0.00	0.00	1.98
2237	5948	1.384222	GGCGCCCAAAACCCATCTAG	61.384	60.000	18.11	0.00	0.00	2.43
2238	5949	1.384222	GCGCCCAAAACCCATCTAGG	61.384	60.000	0.00	0.00	37.03	3.02
2271	5982	4.964241	GCCGCCCCTCCCCTAGAT	62.964	72.222	0.00	0.00	0.00	1.98
2272	5983	2.925170	CCGCCCCTCCCCTAGATG	60.925	72.222	0.00	0.00	0.00	2.90
2273	5984	2.925170	CGCCCCTCCCCTAGATGG	60.925	72.222	0.00	0.00	0.00	3.51
2285	5996	2.264455	CCTAGATGGGATCTGAAGGGG	58.736	57.143	0.00	0.00	40.51	4.79
2286	5997	1.627834	CTAGATGGGATCTGAAGGGGC	59.372	57.143	0.00	0.00	40.51	5.80
2287	5998	1.064824	AGATGGGATCTGAAGGGGCC	61.065	60.000	0.00	0.00	38.44	5.80
2288	5999	2.403132	GATGGGATCTGAAGGGGCCG	62.403	65.000	0.00	0.00	0.00	6.13
2289	6000	3.878667	GGGATCTGAAGGGGCCGG	61.879	72.222	0.00	0.00	0.00	6.13
2290	6001	4.570874	GGATCTGAAGGGGCCGGC	62.571	72.222	21.18	21.18	0.00	6.13
2291	6002	4.570874	GATCTGAAGGGGCCGGCC	62.571	72.222	38.57	38.57	0.00	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	0.760945	CGCCAGGGAGATAAGGAGGT	60.761	60.000	0.00	0.00	0.00	3.85
65	67	1.229209	GATCCAGGAGCCCCCGATA	60.229	63.158	0.00	0.00	40.87	2.92
176	178	2.180276	GAAGTAGAAGGGGTGAGCTCA	58.820	52.381	13.74	13.74	0.00	4.26
188	190	1.471684	GCGTCCCGAGAAGAAGTAGAA	59.528	52.381	0.00	0.00	0.00	2.10
215	217	2.030562	CGGTGGTTGCGGAGAAGT	59.969	61.111	0.00	0.00	0.00	3.01
385	388	2.500229	GGACAACATGGAAACCGAGAA	58.500	47.619	0.00	0.00	0.00	2.87
619	622	6.731448	ACAAAGTCCTACTCTAAGGGAAAGAT	59.269	38.462	0.00	0.00	37.24	2.40
624	627	4.094476	CCACAAAGTCCTACTCTAAGGGA	58.906	47.826	0.00	0.00	37.24	4.20
643	646	6.475402	CCACAAAGTACATTTTCAGTTTCCAC	59.525	38.462	0.00	0.00	0.00	4.02
648	651	7.346751	ACATCCACAAAGTACATTTTCAGTT	57.653	32.000	0.00	0.00	0.00	3.16
650	653	7.651808	AGAACATCCACAAAGTACATTTTCAG	58.348	34.615	0.00	0.00	0.00	3.02
651	654	7.581213	AGAACATCCACAAAGTACATTTTCA	57.419	32.000	0.00	0.00	0.00	2.69
797	2103	2.952783	CCGCCGTCGAATACACCG	60.953	66.667	0.00	0.00	38.10	4.94
944	2250	7.160049	TCCAAATGAATTGATGCAAAAGCTAA	58.840	30.769	0.00	0.00	41.85	3.09
1108	4481	2.750166	TCTTCTCGTCCAGATGTCTGAC	59.250	50.000	11.47	0.00	46.59	3.51
1282	4758	5.191522	TCAGTCAACCCTTCATATGAATCCA	59.808	40.000	18.26	0.00	33.01	3.41
1418	4898	9.241919	TCATTTCTAAATGGCTGAAAAGTGATA	57.758	29.630	13.89	0.00	44.51	2.15
1543	5023	8.129211	AGAAAGCTAACATTAACAGTCAAACAC	58.871	33.333	0.00	0.00	0.00	3.32
1695	5186	0.601311	GAGTGGTTGAAGAGCGCAGT	60.601	55.000	11.47	0.00	38.70	4.40
1699	5190	1.671261	CCTCTGAGTGGTTGAAGAGCG	60.671	57.143	3.66	0.00	35.80	5.03
1766	5257	1.970917	CTGGCGTCGAAATCACCTGC	61.971	60.000	0.00	0.00	0.00	4.85
1784	5275	0.036010	CCTCCACATTGGCGACTTCT	60.036	55.000	0.00	0.00	37.47	2.85
1794	5285	1.890894	CGTCGAGGTCCTCCACATT	59.109	57.895	15.90	0.00	35.89	2.71
1818	5309	0.460311	GAATCCTTCCTCTCGCGGAA	59.540	55.000	6.13	0.02	40.64	4.30
1830	5321	1.079127	CCGCTGGACACGAATCCTT	60.079	57.895	10.39	0.00	39.75	3.36
1853	5344	5.767670	TGTATCTACAAGGCTAGGAGTTCT	58.232	41.667	0.00	0.00	32.40	3.01
1895	5386	1.065418	CCCTAGTGGCCACCAACTTAG	60.065	57.143	32.29	24.03	34.18	2.18
1898	5389	0.770557	TTCCCTAGTGGCCACCAACT	60.771	55.000	32.29	16.45	34.18	3.16
1947	5442	9.844790	CATTTAACATCAGATACACACAAACAT	57.155	29.630	0.00	0.00	0.00	2.71
1948	5443	8.296000	CCATTTAACATCAGATACACACAAACA	58.704	33.333	0.00	0.00	0.00	2.83
1949	5444	8.511321	TCCATTTAACATCAGATACACACAAAC	58.489	33.333	0.00	0.00	0.00	2.93
1950	5445	8.628630	TCCATTTAACATCAGATACACACAAA	57.371	30.769	0.00	0.00	0.00	2.83
1951	5446	8.628630	TTCCATTTAACATCAGATACACACAA	57.371	30.769	0.00	0.00	0.00	3.33
1952	5447	8.806429	ATTCCATTTAACATCAGATACACACA	57.194	30.769	0.00	0.00	0.00	3.72
1953	5448	9.113838	AGATTCCATTTAACATCAGATACACAC	57.886	33.333	0.00	0.00	0.00	3.82
1954	5449	9.685276	AAGATTCCATTTAACATCAGATACACA	57.315	29.630	0.00	0.00	0.00	3.72
1955	5450	9.941664	CAAGATTCCATTTAACATCAGATACAC	57.058	33.333	0.00	0.00	0.00	2.90
1956	5451	9.904198	TCAAGATTCCATTTAACATCAGATACA	57.096	29.630	0.00	0.00	0.00	2.29
1986	5481	6.207025	CCACACTACTACTAACTCACAGAACT	59.793	42.308	0.00	0.00	0.00	3.01
2007	5699	0.467290	GCCCTCACTTTTGACCCACA	60.467	55.000	0.00	0.00	0.00	4.17
2122	5830	8.937884	TGCTATGACGCTACAACTAATTTTTAA	58.062	29.630	0.00	0.00	0.00	1.52
2219	5930	1.384222	CCTAGATGGGTTTTGGGCGC	61.384	60.000	0.00	0.00	0.00	6.53
2220	5931	2.793831	CCTAGATGGGTTTTGGGCG	58.206	57.895	0.00	0.00	0.00	6.13
2254	5965	4.964241	ATCTAGGGGAGGGGCGGC	62.964	72.222	0.00	0.00	0.00	6.53
2255	5966	2.925170	CATCTAGGGGAGGGGCGG	60.925	72.222	0.00	0.00	0.00	6.13
2256	5967	2.925170	CCATCTAGGGGAGGGGCG	60.925	72.222	0.00	0.00	41.74	6.13
2265	5976	2.264455	CCCCTTCAGATCCCATCTAGG	58.736	57.143	0.00	0.00	37.58	3.02
2266	5977	1.627834	GCCCCTTCAGATCCCATCTAG	59.372	57.143	0.00	0.00	37.58	2.43
2267	5978	1.734655	GCCCCTTCAGATCCCATCTA	58.265	55.000	0.00	0.00	37.58	1.98
2268	5979	1.064824	GGCCCCTTCAGATCCCATCT	61.065	60.000	0.00	0.00	41.15	2.90
2269	5980	1.458045	GGCCCCTTCAGATCCCATC	59.542	63.158	0.00	0.00	0.00	3.51
2270	5981	2.455565	CGGCCCCTTCAGATCCCAT	61.456	63.158	0.00	0.00	0.00	4.00
2271	5982	3.089874	CGGCCCCTTCAGATCCCA	61.090	66.667	0.00	0.00	0.00	4.37
2272	5983	3.878667	CCGGCCCCTTCAGATCCC	61.879	72.222	0.00	0.00	0.00	3.85
2273	5984	4.570874	GCCGGCCCCTTCAGATCC	62.571	72.222	18.11	0.00	0.00	3.36
2274	5985	4.570874	GGCCGGCCCCTTCAGATC	62.571	72.222	36.64	5.01	0.00	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.