Multiple sequence alignment - TraesCS7A01G444800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G444800 chr7A 100.000 2771 0 0 1 2771 639578301 639581071 0.000000e+00 5118.0
1 TraesCS7A01G444800 chr7A 90.167 1017 57 10 798 1811 639598789 639599765 0.000000e+00 1284.0
2 TraesCS7A01G444800 chr7A 85.106 799 71 17 796 1551 639740855 639741648 0.000000e+00 773.0
3 TraesCS7A01G444800 chr7A 96.421 447 14 2 986 1432 639654757 639655201 0.000000e+00 736.0
4 TraesCS7A01G444800 chr7A 90.378 291 25 2 93 383 639645836 639646123 2.010000e-101 379.0
5 TraesCS7A01G444800 chr7A 85.196 358 43 7 1 358 639596224 639596571 2.620000e-95 359.0
6 TraesCS7A01G444800 chr7A 88.000 275 26 3 1537 1811 639659226 639659493 4.450000e-83 318.0
7 TraesCS7A01G444800 chr7A 85.149 303 34 6 1519 1811 639741538 639741839 1.610000e-77 300.0
8 TraesCS7A01G444800 chr7A 75.277 631 128 20 2154 2771 650405442 650406057 2.720000e-70 276.0
9 TraesCS7A01G444800 chr7A 95.946 148 6 0 1914 2061 639599763 639599910 9.920000e-60 241.0
10 TraesCS7A01G444800 chr7A 89.385 179 14 3 509 687 725442920 725443093 1.290000e-53 220.0
11 TraesCS7A01G444800 chr7A 90.909 110 10 0 1807 1916 89962477 89962368 6.180000e-32 148.0
12 TraesCS7A01G444800 chr7A 91.346 104 6 2 687 790 639598618 639598718 3.720000e-29 139.0
13 TraesCS7A01G444800 chr7A 85.315 143 12 3 368 510 639646137 639646270 3.720000e-29 139.0
14 TraesCS7A01G444800 chr7A 74.499 349 72 10 2154 2493 33328608 33328268 4.810000e-28 135.0
15 TraesCS7A01G444800 chr7A 88.596 114 6 4 396 508 639650819 639650926 6.230000e-27 132.0
16 TraesCS7A01G444800 chr7A 87.719 114 8 3 396 508 639653134 639653242 8.060000e-26 128.0
17 TraesCS7A01G444800 chr7A 86.667 120 6 6 1914 2033 639741837 639741946 1.040000e-24 124.0
18 TraesCS7A01G444800 chr7A 97.959 49 1 0 687 735 639648595 639648643 4.920000e-13 86.1
19 TraesCS7A01G444800 chr7A 97.959 49 1 0 687 735 639650918 639650966 4.920000e-13 86.1
20 TraesCS7A01G444800 chr7A 97.959 49 1 0 687 735 639653234 639653282 4.920000e-13 86.1
21 TraesCS7A01G444800 chr7B 92.877 730 37 8 798 1515 600350941 600351667 0.000000e+00 1046.0
22 TraesCS7A01G444800 chr7B 92.329 730 41 8 798 1515 600389261 600389987 0.000000e+00 1024.0
23 TraesCS7A01G444800 chr7B 91.770 729 41 7 798 1515 600363915 600364635 0.000000e+00 996.0
24 TraesCS7A01G444800 chr7B 91.632 729 42 7 798 1515 600311288 600312008 0.000000e+00 990.0
25 TraesCS7A01G444800 chr7B 93.321 539 24 8 986 1515 600093618 600094153 0.000000e+00 785.0
26 TraesCS7A01G444800 chr7B 88.600 500 53 3 11 508 600029512 600030009 3.050000e-169 604.0
27 TraesCS7A01G444800 chr7B 91.235 251 22 0 1 251 600310488 600310738 2.640000e-90 342.0
28 TraesCS7A01G444800 chr7B 90.800 250 23 0 1 250 600028958 600029207 4.420000e-88 335.0
29 TraesCS7A01G444800 chr7B 90.438 251 23 1 1 251 600363115 600363364 2.060000e-86 329.0
30 TraesCS7A01G444800 chr7B 90.119 253 22 3 1916 2166 600351861 600352112 2.660000e-85 326.0
31 TraesCS7A01G444800 chr7B 90.119 253 22 3 1916 2166 600390181 600390432 2.660000e-85 326.0
32 TraesCS7A01G444800 chr7B 87.900 281 22 8 1532 1809 600351588 600351859 1.240000e-83 320.0
33 TraesCS7A01G444800 chr7B 87.900 281 22 8 1532 1809 600389908 600390179 1.240000e-83 320.0
34 TraesCS7A01G444800 chr7B 89.641 251 25 1 1 251 600388459 600388708 4.450000e-83 318.0
35 TraesCS7A01G444800 chr7B 85.522 297 28 11 1520 1811 600094062 600094348 2.090000e-76 296.0
36 TraesCS7A01G444800 chr7B 92.347 196 9 5 798 990 600093339 600093531 9.780000e-70 274.0
37 TraesCS7A01G444800 chr7B 90.196 204 17 3 1965 2166 600094365 600094567 2.120000e-66 263.0
38 TraesCS7A01G444800 chr7B 92.143 140 8 2 370 508 600310988 600311125 7.830000e-46 195.0
39 TraesCS7A01G444800 chr7B 91.429 140 9 2 370 508 600363615 600363752 3.640000e-44 189.0
40 TraesCS7A01G444800 chr7B 91.429 140 9 2 370 508 600388961 600389098 3.640000e-44 189.0
41 TraesCS7A01G444800 chr7D 88.051 862 96 7 1914 2771 554529960 554529102 0.000000e+00 1014.0
42 TraesCS7A01G444800 chr7D 90.039 763 43 17 798 1527 554530896 554530134 0.000000e+00 957.0
43 TraesCS7A01G444800 chr7D 93.431 548 30 3 986 1527 554474680 554474133 0.000000e+00 808.0
44 TraesCS7A01G444800 chr7D 88.107 412 38 8 1 412 554468175 554467775 1.930000e-131 479.0
45 TraesCS7A01G444800 chr7D 84.016 513 60 15 1 508 554519367 554518872 8.980000e-130 473.0
46 TraesCS7A01G444800 chr7D 83.431 513 63 15 1 508 554513095 554512600 9.050000e-125 457.0
47 TraesCS7A01G444800 chr7D 92.549 255 15 4 1914 2166 554485899 554485647 2.030000e-96 363.0
48 TraesCS7A01G444800 chr7D 88.070 285 26 3 1534 1813 554474228 554473947 5.720000e-87 331.0
49 TraesCS7A01G444800 chr7D 84.887 311 41 4 1510 1820 554420852 554420548 2.680000e-80 309.0
50 TraesCS7A01G444800 chr7D 93.434 198 7 4 796 990 554500774 554500580 3.490000e-74 289.0
51 TraesCS7A01G444800 chr7D 91.878 197 16 0 1624 1820 554526670 554526474 2.720000e-70 276.0
52 TraesCS7A01G444800 chr7D 91.282 195 8 5 798 989 554475305 554475117 9.850000e-65 257.0
53 TraesCS7A01G444800 chr7D 89.375 160 11 4 1361 1514 554486251 554486092 2.180000e-46 196.0
54 TraesCS7A01G444800 chr7D 86.777 121 9 3 1914 2034 554420559 554420446 8.060000e-26 128.0
55 TraesCS7A01G444800 chr7D 88.679 106 8 2 690 793 554475479 554475376 2.900000e-25 126.0
56 TraesCS7A01G444800 chr7D 86.792 106 10 2 690 793 554531071 554530968 6.270000e-22 115.0
57 TraesCS7A01G444800 chr3D 76.912 667 130 16 2112 2768 582628558 582629210 9.440000e-95 357.0
58 TraesCS7A01G444800 chr3D 86.034 179 21 3 508 685 425154713 425154538 3.640000e-44 189.0
59 TraesCS7A01G444800 chr2A 76.825 630 120 17 2154 2771 154126485 154127100 5.720000e-87 331.0
60 TraesCS7A01G444800 chr2A 92.523 107 8 0 1810 1916 79460457 79460351 1.330000e-33 154.0
61 TraesCS7A01G444800 chr2A 90.909 110 10 0 1808 1917 104784708 104784817 6.180000e-32 148.0
62 TraesCS7A01G444800 chr2A 88.983 118 11 2 1808 1924 733637186 733637070 8.000000e-31 145.0
63 TraesCS7A01G444800 chr3B 76.312 667 127 21 2115 2771 789610726 789610081 7.400000e-86 327.0
64 TraesCS7A01G444800 chr3B 80.788 203 29 6 500 698 446748107 446747911 1.720000e-32 150.0
65 TraesCS7A01G444800 chr4B 89.944 179 17 1 509 686 27243824 27243646 2.150000e-56 230.0
66 TraesCS7A01G444800 chr4B 87.059 170 18 4 508 673 147699472 147699303 3.640000e-44 189.0
67 TraesCS7A01G444800 chr4B 84.293 191 25 4 509 695 667860408 667860219 6.100000e-42 182.0
68 TraesCS7A01G444800 chr5D 86.096 187 19 4 505 685 462454615 462454800 7.830000e-46 195.0
69 TraesCS7A01G444800 chr2B 77.910 335 58 10 2333 2659 13073365 13073691 7.830000e-46 195.0
70 TraesCS7A01G444800 chr2B 91.667 108 9 0 1809 1916 526391751 526391858 1.720000e-32 150.0
71 TraesCS7A01G444800 chr2B 79.679 187 30 7 509 693 487212360 487212180 8.060000e-26 128.0
72 TraesCS7A01G444800 chr3A 86.264 182 19 4 508 686 562912720 562912898 2.820000e-45 193.0
73 TraesCS7A01G444800 chr2D 85.714 175 19 5 508 681 590938003 590937834 2.190000e-41 180.0
74 TraesCS7A01G444800 chr2D 89.655 116 10 2 1806 1919 392160071 392160186 2.220000e-31 147.0
75 TraesCS7A01G444800 chr6D 83.511 188 26 3 506 688 418770984 418770797 1.320000e-38 171.0
76 TraesCS7A01G444800 chr5A 91.818 110 9 0 1807 1916 663713757 663713648 1.330000e-33 154.0
77 TraesCS7A01G444800 chr5A 91.071 112 10 0 1805 1916 574780264 574780153 4.780000e-33 152.0
78 TraesCS7A01G444800 chr5A 92.308 65 5 0 629 693 649857790 649857854 2.940000e-15 93.5
79 TraesCS7A01G444800 chr6A 89.167 120 12 1 1806 1925 13437285 13437167 6.180000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G444800 chr7A 639578301 639581071 2770 False 5118.000000 5118 100.000000 1 2771 1 chr7A.!!$F1 2770
1 TraesCS7A01G444800 chr7A 639596224 639599910 3686 False 505.750000 1284 90.663750 1 2061 4 chr7A.!!$F5 2060
2 TraesCS7A01G444800 chr7A 639740855 639741946 1091 False 399.000000 773 85.640667 796 2033 3 chr7A.!!$F7 1237
3 TraesCS7A01G444800 chr7A 650405442 650406057 615 False 276.000000 276 75.277000 2154 2771 1 chr7A.!!$F3 617
4 TraesCS7A01G444800 chr7A 639645836 639655201 9365 False 221.537500 736 92.788250 93 1432 8 chr7A.!!$F6 1339
5 TraesCS7A01G444800 chr7B 600350941 600352112 1171 False 564.000000 1046 90.298667 798 2166 3 chr7B.!!$F4 1368
6 TraesCS7A01G444800 chr7B 600310488 600312008 1520 False 509.000000 990 91.670000 1 1515 3 chr7B.!!$F3 1514
7 TraesCS7A01G444800 chr7B 600363115 600364635 1520 False 504.666667 996 91.212333 1 1515 3 chr7B.!!$F5 1514
8 TraesCS7A01G444800 chr7B 600028958 600030009 1051 False 469.500000 604 89.700000 1 508 2 chr7B.!!$F1 507
9 TraesCS7A01G444800 chr7B 600388459 600390432 1973 False 435.400000 1024 90.283600 1 2166 5 chr7B.!!$F6 2165
10 TraesCS7A01G444800 chr7B 600093339 600094567 1228 False 404.500000 785 90.346500 798 2166 4 chr7B.!!$F2 1368
11 TraesCS7A01G444800 chr7D 554526474 554531071 4597 True 590.500000 1014 89.190000 690 2771 4 chr7D.!!$R8 2081
12 TraesCS7A01G444800 chr7D 554473947 554475479 1532 True 380.500000 808 90.365500 690 1813 4 chr7D.!!$R6 1123
13 TraesCS7A01G444800 chr7D 554485647 554486251 604 True 279.500000 363 90.962000 1361 2166 2 chr7D.!!$R7 805
14 TraesCS7A01G444800 chr3D 582628558 582629210 652 False 357.000000 357 76.912000 2112 2768 1 chr3D.!!$F1 656
15 TraesCS7A01G444800 chr2A 154126485 154127100 615 False 331.000000 331 76.825000 2154 2771 1 chr2A.!!$F2 617
16 TraesCS7A01G444800 chr3B 789610081 789610726 645 True 327.000000 327 76.312000 2115 2771 1 chr3B.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 1.000496 GATCGGTTAGCTTAGTCCCCG 60.000 57.143 0.0 0.0 36.83 5.73 F
1282 12359 0.531974 GGAGTGTTGCTTCCACGTGA 60.532 55.000 19.3 0.0 37.88 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 12644 0.258194 TCCTCCTTCTCCTCGTACCC 59.742 60.0 0.0 0.0 0.0 3.69 R
2266 13390 0.107831 GTGGGCAGTGTGTGGTCTTA 59.892 55.0 0.0 0.0 0.0 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.870433 TGACGAACAGAACAAACTGAAGTAA 59.130 36.000 0.00 0.00 40.63 2.24
76 77 7.999679 TGACAAGATCATCCAAATTTACATCC 58.000 34.615 0.00 0.00 29.99 3.51
126 127 4.602340 TCTCTGTAGTGAGTTTTGGGAC 57.398 45.455 0.00 0.00 35.68 4.46
171 172 1.000496 GATCGGTTAGCTTAGTCCCCG 60.000 57.143 0.00 0.00 36.83 5.73
174 175 1.066152 CGGTTAGCTTAGTCCCCGTAC 59.934 57.143 0.00 0.00 0.00 3.67
176 177 1.066152 GTTAGCTTAGTCCCCGTACGG 59.934 57.143 27.68 27.68 0.00 4.02
178 179 2.810403 CTTAGTCCCCGTACGGCC 59.190 66.667 29.15 17.55 0.00 6.13
203 748 2.512286 CGCGTGATCCATGGTGCT 60.512 61.111 12.58 0.00 0.00 4.40
252 797 1.735571 CCTACATACACAACAACGGCC 59.264 52.381 0.00 0.00 0.00 6.13
271 816 2.673368 GCCGAACAATCTAAGTCCACAG 59.327 50.000 0.00 0.00 0.00 3.66
278 823 4.593206 ACAATCTAAGTCCACAGAGAACCA 59.407 41.667 0.00 0.00 0.00 3.67
289 834 3.677121 CACAGAGAACCAGATCGACAAAG 59.323 47.826 0.00 0.00 0.00 2.77
384 2839 5.007234 TCTGTTGAACTGTGTATTTCCGTTG 59.993 40.000 0.00 0.00 0.00 4.10
394 2849 8.662141 ACTGTGTATTTCCGTTGTGAATATAAC 58.338 33.333 0.00 0.00 0.00 1.89
489 7595 3.861276 CATGTGCCTCATCAAACATGT 57.139 42.857 0.00 0.00 43.08 3.21
500 7606 5.970592 TCATCAAACATGTGGTTCAAACAA 58.029 33.333 0.00 0.00 39.29 2.83
501 7607 6.401394 TCATCAAACATGTGGTTCAAACAAA 58.599 32.000 0.00 0.00 39.29 2.83
502 7608 6.875726 TCATCAAACATGTGGTTCAAACAAAA 59.124 30.769 0.00 0.00 39.29 2.44
503 7609 7.388776 TCATCAAACATGTGGTTCAAACAAAAA 59.611 29.630 0.00 0.00 39.29 1.94
526 7632 7.840342 AAAATACAGTCATGCTAAGTCTCAG 57.160 36.000 0.00 0.00 0.00 3.35
527 7633 6.537453 AATACAGTCATGCTAAGTCTCAGT 57.463 37.500 0.00 0.00 0.00 3.41
528 7634 4.448537 ACAGTCATGCTAAGTCTCAGTC 57.551 45.455 0.00 0.00 0.00 3.51
529 7635 3.119673 ACAGTCATGCTAAGTCTCAGTCG 60.120 47.826 0.00 0.00 0.00 4.18
530 7636 3.127721 CAGTCATGCTAAGTCTCAGTCGA 59.872 47.826 0.00 0.00 0.00 4.20
531 7637 3.127895 AGTCATGCTAAGTCTCAGTCGAC 59.872 47.826 7.70 7.70 0.00 4.20
532 7638 3.127895 GTCATGCTAAGTCTCAGTCGACT 59.872 47.826 13.58 13.58 45.73 4.18
533 7639 4.333095 GTCATGCTAAGTCTCAGTCGACTA 59.667 45.833 19.57 0.00 43.14 2.59
534 7640 4.941873 TCATGCTAAGTCTCAGTCGACTAA 59.058 41.667 19.57 1.94 43.14 2.24
535 7641 4.948608 TGCTAAGTCTCAGTCGACTAAG 57.051 45.455 19.57 14.47 43.14 2.18
536 7642 4.576879 TGCTAAGTCTCAGTCGACTAAGA 58.423 43.478 19.57 17.01 43.14 2.10
537 7643 4.392445 TGCTAAGTCTCAGTCGACTAAGAC 59.608 45.833 33.03 33.03 43.14 3.01
541 7647 3.680937 AGTCTCAGTCGACTAAGACTTCG 59.319 47.826 35.84 15.67 46.73 3.79
542 7648 4.800249 AGTCTCAGTCGACTAAGACTTCGT 60.800 45.833 35.84 20.46 46.73 3.85
543 7649 6.255330 AGTCTCAGTCGACTAAGACTTCGTT 61.255 44.000 35.84 20.14 46.73 3.85
544 7650 7.013787 AGTCTCAGTCGACTAAGACTTCGTTA 61.014 42.308 35.84 5.55 46.73 3.18
545 7651 8.428410 AGTCTCAGTCGACTAAGACTTCGTTAA 61.428 40.741 35.84 4.85 46.73 2.01
560 7666 7.608308 ACTTCGTTAAGTCTTAGTCGATACT 57.392 36.000 16.76 0.00 42.42 2.12
561 7667 8.709386 ACTTCGTTAAGTCTTAGTCGATACTA 57.291 34.615 16.76 6.86 42.42 1.82
562 7668 9.323985 ACTTCGTTAAGTCTTAGTCGATACTAT 57.676 33.333 16.76 5.14 42.42 2.12
591 7697 9.006839 TCATAAGATTTACATTGAGATCCATGC 57.993 33.333 0.00 0.00 0.00 4.06
592 7698 8.789762 CATAAGATTTACATTGAGATCCATGCA 58.210 33.333 0.00 0.00 0.00 3.96
593 7699 7.649533 AAGATTTACATTGAGATCCATGCAA 57.350 32.000 0.00 0.00 0.00 4.08
594 7700 7.649533 AGATTTACATTGAGATCCATGCAAA 57.350 32.000 0.00 0.00 0.00 3.68
595 7701 8.070034 AGATTTACATTGAGATCCATGCAAAA 57.930 30.769 0.00 0.00 0.00 2.44
596 7702 8.701895 AGATTTACATTGAGATCCATGCAAAAT 58.298 29.630 0.00 7.17 0.00 1.82
597 7703 9.321562 GATTTACATTGAGATCCATGCAAAATT 57.678 29.630 0.00 0.00 0.00 1.82
598 7704 9.675464 ATTTACATTGAGATCCATGCAAAATTT 57.325 25.926 0.00 0.00 0.00 1.82
600 7706 9.585099 TTACATTGAGATCCATGCAAAATTTAC 57.415 29.630 0.00 0.00 0.00 2.01
601 7707 7.844009 ACATTGAGATCCATGCAAAATTTACT 58.156 30.769 0.00 0.00 0.00 2.24
602 7708 8.316214 ACATTGAGATCCATGCAAAATTTACTT 58.684 29.630 0.00 0.00 0.00 2.24
603 7709 9.158233 CATTGAGATCCATGCAAAATTTACTTT 57.842 29.630 0.00 0.00 0.00 2.66
604 7710 9.729281 ATTGAGATCCATGCAAAATTTACTTTT 57.271 25.926 0.00 0.00 37.54 2.27
605 7711 8.761575 TGAGATCCATGCAAAATTTACTTTTC 57.238 30.769 0.00 0.00 34.80 2.29
606 7712 8.366401 TGAGATCCATGCAAAATTTACTTTTCA 58.634 29.630 0.00 0.00 34.80 2.69
607 7713 8.767478 AGATCCATGCAAAATTTACTTTTCAG 57.233 30.769 0.00 0.00 34.80 3.02
608 7714 8.370182 AGATCCATGCAAAATTTACTTTTCAGT 58.630 29.630 0.00 0.00 34.80 3.41
609 7715 8.907222 ATCCATGCAAAATTTACTTTTCAGTT 57.093 26.923 0.00 0.00 34.80 3.16
610 7716 8.729805 TCCATGCAAAATTTACTTTTCAGTTT 57.270 26.923 0.00 0.00 34.80 2.66
611 7717 9.171877 TCCATGCAAAATTTACTTTTCAGTTTT 57.828 25.926 0.00 0.00 34.80 2.43
612 7718 9.437045 CCATGCAAAATTTACTTTTCAGTTTTC 57.563 29.630 0.00 0.00 34.80 2.29
615 7721 9.651913 TGCAAAATTTACTTTTCAGTTTTCTCT 57.348 25.926 0.00 0.00 34.80 3.10
623 7729 7.240414 ACTTTTCAGTTTTCTCTCTCTTTCG 57.760 36.000 0.00 0.00 0.00 3.46
624 7730 5.659048 TTTCAGTTTTCTCTCTCTTTCGC 57.341 39.130 0.00 0.00 0.00 4.70
625 7731 4.322080 TCAGTTTTCTCTCTCTTTCGCA 57.678 40.909 0.00 0.00 0.00 5.10
626 7732 4.887748 TCAGTTTTCTCTCTCTTTCGCAT 58.112 39.130 0.00 0.00 0.00 4.73
627 7733 4.687948 TCAGTTTTCTCTCTCTTTCGCATG 59.312 41.667 0.00 0.00 0.00 4.06
628 7734 3.999663 AGTTTTCTCTCTCTTTCGCATGG 59.000 43.478 0.00 0.00 0.00 3.66
629 7735 3.685139 TTTCTCTCTCTTTCGCATGGT 57.315 42.857 0.00 0.00 0.00 3.55
630 7736 4.801330 TTTCTCTCTCTTTCGCATGGTA 57.199 40.909 0.00 0.00 0.00 3.25
631 7737 5.344743 TTTCTCTCTCTTTCGCATGGTAT 57.655 39.130 0.00 0.00 0.00 2.73
632 7738 4.313277 TCTCTCTCTTTCGCATGGTATG 57.687 45.455 0.00 0.00 0.00 2.39
633 7739 3.701542 TCTCTCTCTTTCGCATGGTATGT 59.298 43.478 0.00 0.00 0.00 2.29
634 7740 4.046938 TCTCTCTTTCGCATGGTATGTC 57.953 45.455 0.00 0.00 0.00 3.06
635 7741 3.447229 TCTCTCTTTCGCATGGTATGTCA 59.553 43.478 0.00 0.00 0.00 3.58
636 7742 4.081697 TCTCTCTTTCGCATGGTATGTCAA 60.082 41.667 0.00 0.00 0.00 3.18
637 7743 4.769688 TCTCTTTCGCATGGTATGTCAAT 58.230 39.130 0.00 0.00 0.00 2.57
638 7744 5.185454 TCTCTTTCGCATGGTATGTCAATT 58.815 37.500 0.00 0.00 0.00 2.32
639 7745 5.065090 TCTCTTTCGCATGGTATGTCAATTG 59.935 40.000 0.00 0.00 0.00 2.32
640 7746 4.940654 TCTTTCGCATGGTATGTCAATTGA 59.059 37.500 3.38 3.38 0.00 2.57
641 7747 4.614555 TTCGCATGGTATGTCAATTGAC 57.385 40.909 28.10 28.10 44.97 3.18
642 7748 3.872696 TCGCATGGTATGTCAATTGACT 58.127 40.909 32.57 22.18 44.99 3.41
643 7749 3.622612 TCGCATGGTATGTCAATTGACTG 59.377 43.478 32.57 23.59 44.99 3.51
644 7750 3.622612 CGCATGGTATGTCAATTGACTGA 59.377 43.478 32.57 20.56 44.99 3.41
645 7751 4.260497 CGCATGGTATGTCAATTGACTGAG 60.260 45.833 32.57 21.22 44.99 3.35
646 7752 4.877823 GCATGGTATGTCAATTGACTGAGA 59.122 41.667 32.57 17.42 44.99 3.27
647 7753 5.220739 GCATGGTATGTCAATTGACTGAGAC 60.221 44.000 32.57 22.35 44.99 3.36
648 7754 5.745312 TGGTATGTCAATTGACTGAGACT 57.255 39.130 32.57 16.01 44.99 3.24
649 7755 6.114187 TGGTATGTCAATTGACTGAGACTT 57.886 37.500 32.57 14.75 44.99 3.01
650 7756 5.934043 TGGTATGTCAATTGACTGAGACTTG 59.066 40.000 32.57 0.00 44.99 3.16
651 7757 5.352569 GGTATGTCAATTGACTGAGACTTGG 59.647 44.000 32.57 0.00 44.99 3.61
652 7758 4.422073 TGTCAATTGACTGAGACTTGGT 57.578 40.909 32.57 0.00 44.99 3.67
653 7759 4.780815 TGTCAATTGACTGAGACTTGGTT 58.219 39.130 32.57 0.00 44.99 3.67
654 7760 5.924356 TGTCAATTGACTGAGACTTGGTTA 58.076 37.500 32.57 10.54 44.99 2.85
655 7761 6.353323 TGTCAATTGACTGAGACTTGGTTAA 58.647 36.000 32.57 10.14 44.99 2.01
656 7762 6.826231 TGTCAATTGACTGAGACTTGGTTAAA 59.174 34.615 32.57 9.55 44.99 1.52
657 7763 7.502226 TGTCAATTGACTGAGACTTGGTTAAAT 59.498 33.333 32.57 0.00 44.99 1.40
658 7764 8.017946 GTCAATTGACTGAGACTTGGTTAAATC 58.982 37.037 27.66 0.00 41.65 2.17
659 7765 7.939039 TCAATTGACTGAGACTTGGTTAAATCT 59.061 33.333 3.38 0.00 0.00 2.40
660 7766 7.913674 ATTGACTGAGACTTGGTTAAATCTC 57.086 36.000 0.00 0.00 38.46 2.75
661 7767 6.419484 TGACTGAGACTTGGTTAAATCTCA 57.581 37.500 3.03 3.03 44.05 3.27
665 7771 5.470368 TGAGACTTGGTTAAATCTCAGTCG 58.530 41.667 0.00 0.00 41.99 4.18
666 7772 5.243060 TGAGACTTGGTTAAATCTCAGTCGA 59.757 40.000 0.00 0.00 41.99 4.20
667 7773 6.071334 TGAGACTTGGTTAAATCTCAGTCGAT 60.071 38.462 0.00 0.00 41.99 3.59
668 7774 6.702329 AGACTTGGTTAAATCTCAGTCGATT 58.298 36.000 0.00 0.00 35.23 3.34
669 7775 7.837863 AGACTTGGTTAAATCTCAGTCGATTA 58.162 34.615 0.00 0.00 33.47 1.75
670 7776 8.311836 AGACTTGGTTAAATCTCAGTCGATTAA 58.688 33.333 0.00 0.00 33.47 1.40
671 7777 8.480643 ACTTGGTTAAATCTCAGTCGATTAAG 57.519 34.615 0.00 0.00 33.47 1.85
672 7778 8.311836 ACTTGGTTAAATCTCAGTCGATTAAGA 58.688 33.333 0.00 0.00 33.47 2.10
673 7779 8.475331 TTGGTTAAATCTCAGTCGATTAAGAC 57.525 34.615 0.00 0.00 41.23 3.01
674 7780 7.039882 TGGTTAAATCTCAGTCGATTAAGACC 58.960 38.462 0.00 0.00 41.83 3.85
675 7781 7.093465 TGGTTAAATCTCAGTCGATTAAGACCT 60.093 37.037 0.00 0.00 41.83 3.85
676 7782 8.411683 GGTTAAATCTCAGTCGATTAAGACCTA 58.588 37.037 0.00 0.00 41.83 3.08
677 7783 9.453325 GTTAAATCTCAGTCGATTAAGACCTAG 57.547 37.037 0.00 0.00 41.83 3.02
678 7784 5.699097 ATCTCAGTCGATTAAGACCTAGC 57.301 43.478 0.00 0.00 41.83 3.42
679 7785 3.884091 TCTCAGTCGATTAAGACCTAGCC 59.116 47.826 0.00 0.00 41.83 3.93
680 7786 3.628008 TCAGTCGATTAAGACCTAGCCA 58.372 45.455 0.00 0.00 41.83 4.75
681 7787 3.380637 TCAGTCGATTAAGACCTAGCCAC 59.619 47.826 0.00 0.00 41.83 5.01
682 7788 3.130516 CAGTCGATTAAGACCTAGCCACA 59.869 47.826 0.00 0.00 41.83 4.17
683 7789 3.130693 AGTCGATTAAGACCTAGCCACAC 59.869 47.826 0.00 0.00 41.83 3.82
684 7790 2.429610 TCGATTAAGACCTAGCCACACC 59.570 50.000 0.00 0.00 0.00 4.16
685 7791 2.483188 CGATTAAGACCTAGCCACACCC 60.483 54.545 0.00 0.00 0.00 4.61
758 11286 7.146648 TGCTATTTTTCGTTTCCCGTATTTTT 58.853 30.769 0.00 0.00 37.94 1.94
784 11316 9.613428 TTCCAACAAATATGATAAGTAGGTGAG 57.387 33.333 0.00 0.00 0.00 3.51
921 11523 3.188100 CGGCGTCGATGCACACAT 61.188 61.111 29.46 0.00 39.98 3.21
1282 12359 0.531974 GGAGTGTTGCTTCCACGTGA 60.532 55.000 19.30 0.00 37.88 4.35
1521 12640 2.316108 GAGGAGAAGGAGGATGAGGAC 58.684 57.143 0.00 0.00 0.00 3.85
1522 12641 1.036707 GGAGAAGGAGGATGAGGACG 58.963 60.000 0.00 0.00 0.00 4.79
1523 12642 1.410365 GGAGAAGGAGGATGAGGACGA 60.410 57.143 0.00 0.00 0.00 4.20
1524 12643 1.679153 GAGAAGGAGGATGAGGACGAC 59.321 57.143 0.00 0.00 0.00 4.34
1525 12644 0.382515 GAAGGAGGATGAGGACGACG 59.617 60.000 0.00 0.00 0.00 5.12
1526 12645 1.038130 AAGGAGGATGAGGACGACGG 61.038 60.000 0.00 0.00 0.00 4.79
1527 12646 2.491022 GGAGGATGAGGACGACGGG 61.491 68.421 0.00 0.00 0.00 5.28
1528 12647 1.753463 GAGGATGAGGACGACGGGT 60.753 63.158 0.00 0.00 0.00 5.28
1529 12648 0.465097 GAGGATGAGGACGACGGGTA 60.465 60.000 0.00 0.00 0.00 3.69
1530 12649 0.750911 AGGATGAGGACGACGGGTAC 60.751 60.000 0.00 0.00 0.00 3.34
1532 12651 1.078214 ATGAGGACGACGGGTACGA 60.078 57.895 0.00 0.00 44.60 3.43
1533 12652 1.094073 ATGAGGACGACGGGTACGAG 61.094 60.000 0.00 0.00 44.60 4.18
1534 12653 2.437359 AGGACGACGGGTACGAGG 60.437 66.667 0.00 0.00 44.60 4.63
1535 12654 2.436646 GGACGACGGGTACGAGGA 60.437 66.667 0.00 0.00 44.60 3.71
1536 12655 2.467826 GGACGACGGGTACGAGGAG 61.468 68.421 0.00 0.00 44.60 3.69
1537 12656 1.448540 GACGACGGGTACGAGGAGA 60.449 63.158 0.00 0.00 44.60 3.71
1538 12657 1.003355 ACGACGGGTACGAGGAGAA 60.003 57.895 0.00 0.00 44.60 2.87
1539 12658 1.023513 ACGACGGGTACGAGGAGAAG 61.024 60.000 0.00 0.00 44.60 2.85
1540 12659 1.712977 CGACGGGTACGAGGAGAAGG 61.713 65.000 0.00 0.00 44.60 3.46
1541 12660 0.393537 GACGGGTACGAGGAGAAGGA 60.394 60.000 0.00 0.00 44.60 3.36
1542 12661 0.394080 ACGGGTACGAGGAGAAGGAG 60.394 60.000 0.00 0.00 44.60 3.69
1543 12662 1.102222 CGGGTACGAGGAGAAGGAGG 61.102 65.000 0.00 0.00 44.60 4.30
1544 12663 0.258194 GGGTACGAGGAGAAGGAGGA 59.742 60.000 0.00 0.00 0.00 3.71
1545 12664 1.133419 GGGTACGAGGAGAAGGAGGAT 60.133 57.143 0.00 0.00 0.00 3.24
1546 12665 1.957877 GGTACGAGGAGAAGGAGGATG 59.042 57.143 0.00 0.00 0.00 3.51
1547 12666 2.423088 GGTACGAGGAGAAGGAGGATGA 60.423 54.545 0.00 0.00 0.00 2.92
1548 12667 2.065899 ACGAGGAGAAGGAGGATGAG 57.934 55.000 0.00 0.00 0.00 2.90
1549 12668 1.327303 CGAGGAGAAGGAGGATGAGG 58.673 60.000 0.00 0.00 0.00 3.86
1550 12669 1.133637 CGAGGAGAAGGAGGATGAGGA 60.134 57.143 0.00 0.00 0.00 3.71
1650 12770 3.103911 GTTGACCGAGACGTGGCG 61.104 66.667 0.00 0.00 0.00 5.69
1697 12817 0.603975 AAGGAGCTTCGACAGGTTGC 60.604 55.000 0.00 0.00 31.44 4.17
1717 12837 3.996363 TGCAGCTATAACTATGGCATTCG 59.004 43.478 4.78 0.00 41.92 3.34
1744 12864 4.034975 GCATCCTTTTGTCTGTCTCTATGC 59.965 45.833 0.00 0.00 0.00 3.14
1783 12905 6.680148 TGATAATGTAATCGGGAATCCAGA 57.320 37.500 4.29 4.29 0.00 3.86
1805 12927 1.374252 GGGTGAACTGCGTCGTCAT 60.374 57.895 0.00 0.00 0.00 3.06
1809 12931 1.260561 GTGAACTGCGTCGTCATTTGT 59.739 47.619 0.00 0.00 0.00 2.83
1810 12932 2.473609 GTGAACTGCGTCGTCATTTGTA 59.526 45.455 0.00 0.00 0.00 2.41
1811 12933 2.473609 TGAACTGCGTCGTCATTTGTAC 59.526 45.455 0.00 0.00 0.00 2.90
1812 12934 2.433868 ACTGCGTCGTCATTTGTACT 57.566 45.000 0.00 0.00 0.00 2.73
1813 12935 2.750948 ACTGCGTCGTCATTTGTACTT 58.249 42.857 0.00 0.00 0.00 2.24
1814 12936 2.729882 ACTGCGTCGTCATTTGTACTTC 59.270 45.455 0.00 0.00 0.00 3.01
1815 12937 2.063266 TGCGTCGTCATTTGTACTTCC 58.937 47.619 0.00 0.00 0.00 3.46
1816 12938 2.288579 TGCGTCGTCATTTGTACTTCCT 60.289 45.455 0.00 0.00 0.00 3.36
1817 12939 2.735134 GCGTCGTCATTTGTACTTCCTT 59.265 45.455 0.00 0.00 0.00 3.36
1818 12940 3.185797 GCGTCGTCATTTGTACTTCCTTT 59.814 43.478 0.00 0.00 0.00 3.11
1819 12941 4.698276 CGTCGTCATTTGTACTTCCTTTG 58.302 43.478 0.00 0.00 0.00 2.77
1820 12942 4.210537 CGTCGTCATTTGTACTTCCTTTGT 59.789 41.667 0.00 0.00 0.00 2.83
1821 12943 5.277154 CGTCGTCATTTGTACTTCCTTTGTT 60.277 40.000 0.00 0.00 0.00 2.83
1822 12944 6.492254 GTCGTCATTTGTACTTCCTTTGTTT 58.508 36.000 0.00 0.00 0.00 2.83
1823 12945 6.631636 GTCGTCATTTGTACTTCCTTTGTTTC 59.368 38.462 0.00 0.00 0.00 2.78
1824 12946 5.619607 CGTCATTTGTACTTCCTTTGTTTCG 59.380 40.000 0.00 0.00 0.00 3.46
1825 12947 6.510478 CGTCATTTGTACTTCCTTTGTTTCGA 60.510 38.462 0.00 0.00 0.00 3.71
1826 12948 7.190871 GTCATTTGTACTTCCTTTGTTTCGAA 58.809 34.615 0.00 0.00 0.00 3.71
1827 12949 7.860872 GTCATTTGTACTTCCTTTGTTTCGAAT 59.139 33.333 0.00 0.00 0.00 3.34
1828 12950 8.410141 TCATTTGTACTTCCTTTGTTTCGAATT 58.590 29.630 0.00 0.00 0.00 2.17
1829 12951 9.672086 CATTTGTACTTCCTTTGTTTCGAATTA 57.328 29.630 0.00 0.00 0.00 1.40
1830 12952 9.673454 ATTTGTACTTCCTTTGTTTCGAATTAC 57.327 29.630 0.00 0.00 0.00 1.89
1831 12953 8.441312 TTGTACTTCCTTTGTTTCGAATTACT 57.559 30.769 0.00 0.00 0.00 2.24
1832 12954 8.441312 TGTACTTCCTTTGTTTCGAATTACTT 57.559 30.769 0.00 0.00 0.00 2.24
1833 12955 8.339714 TGTACTTCCTTTGTTTCGAATTACTTG 58.660 33.333 0.00 0.00 0.00 3.16
1834 12956 7.329588 ACTTCCTTTGTTTCGAATTACTTGT 57.670 32.000 0.00 0.00 0.00 3.16
1835 12957 7.415229 ACTTCCTTTGTTTCGAATTACTTGTC 58.585 34.615 0.00 0.00 0.00 3.18
1836 12958 5.981174 TCCTTTGTTTCGAATTACTTGTCG 58.019 37.500 0.00 0.00 38.62 4.35
1837 12959 4.611366 CCTTTGTTTCGAATTACTTGTCGC 59.389 41.667 0.00 0.00 37.19 5.19
1838 12960 4.797693 TTGTTTCGAATTACTTGTCGCA 57.202 36.364 0.00 0.00 37.19 5.10
1839 12961 4.383774 TGTTTCGAATTACTTGTCGCAG 57.616 40.909 0.00 0.00 37.19 5.18
1840 12962 3.185594 TGTTTCGAATTACTTGTCGCAGG 59.814 43.478 0.00 0.00 37.19 4.85
1841 12963 2.736144 TCGAATTACTTGTCGCAGGT 57.264 45.000 0.00 0.91 37.19 4.00
1842 12964 3.853831 TCGAATTACTTGTCGCAGGTA 57.146 42.857 0.00 0.00 37.19 3.08
1843 12965 4.380841 TCGAATTACTTGTCGCAGGTAT 57.619 40.909 3.46 0.00 37.19 2.73
1844 12966 4.109766 TCGAATTACTTGTCGCAGGTATG 58.890 43.478 3.46 0.00 37.19 2.39
1845 12967 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
1846 12968 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
1847 12969 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
1848 12970 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
1849 12971 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
1850 12972 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
1851 12973 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
1852 12974 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
1853 12975 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
1854 12976 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
1855 12977 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
1856 12978 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
1857 12979 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
1858 12980 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
1859 12981 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
1860 12982 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
1861 12983 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
1862 12984 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
1893 13015 9.878667 TTTTAGATACATCCATTTCTACAACGA 57.121 29.630 0.00 0.00 0.00 3.85
1894 13016 9.529325 TTTAGATACATCCATTTCTACAACGAG 57.471 33.333 0.00 0.00 0.00 4.18
1895 13017 7.113658 AGATACATCCATTTCTACAACGAGT 57.886 36.000 0.00 0.00 0.00 4.18
1896 13018 8.234136 AGATACATCCATTTCTACAACGAGTA 57.766 34.615 0.00 0.00 0.00 2.59
1897 13019 8.692710 AGATACATCCATTTCTACAACGAGTAA 58.307 33.333 0.00 0.00 30.92 2.24
1898 13020 9.477484 GATACATCCATTTCTACAACGAGTAAT 57.523 33.333 0.00 0.00 30.92 1.89
1899 13021 9.832445 ATACATCCATTTCTACAACGAGTAATT 57.168 29.630 0.00 0.00 30.92 1.40
1900 13022 8.561738 ACATCCATTTCTACAACGAGTAATTT 57.438 30.769 0.00 0.00 30.92 1.82
1901 13023 8.450964 ACATCCATTTCTACAACGAGTAATTTG 58.549 33.333 0.00 0.00 30.92 2.32
1902 13024 8.664798 CATCCATTTCTACAACGAGTAATTTGA 58.335 33.333 0.00 0.00 30.92 2.69
1903 13025 8.610248 TCCATTTCTACAACGAGTAATTTGAA 57.390 30.769 0.00 0.00 30.92 2.69
1904 13026 9.058174 TCCATTTCTACAACGAGTAATTTGAAA 57.942 29.630 0.00 0.00 31.71 2.69
1905 13027 9.113876 CCATTTCTACAACGAGTAATTTGAAAC 57.886 33.333 0.00 0.00 30.65 2.78
1906 13028 9.878599 CATTTCTACAACGAGTAATTTGAAACT 57.121 29.630 0.00 0.00 30.65 2.66
1910 13032 9.199982 TCTACAACGAGTAATTTGAAACTAAGG 57.800 33.333 0.00 0.00 30.92 2.69
1911 13033 9.199982 CTACAACGAGTAATTTGAAACTAAGGA 57.800 33.333 0.00 0.00 30.92 3.36
1912 13034 8.441312 ACAACGAGTAATTTGAAACTAAGGAA 57.559 30.769 0.00 0.00 0.00 3.36
1913 13035 8.557029 ACAACGAGTAATTTGAAACTAAGGAAG 58.443 33.333 0.00 0.00 0.00 3.46
1940 13062 6.811253 TTGATTTGAAGGTATAAACGTGCT 57.189 33.333 0.00 0.00 0.00 4.40
1948 13070 5.991328 AGGTATAAACGTGCTCAATCATG 57.009 39.130 0.00 0.00 0.00 3.07
2102 13224 0.749649 ATCTCTGATGCGACCCTCAC 59.250 55.000 0.00 0.00 0.00 3.51
2119 13242 2.276201 TCACACGCCTGCATATGTTAC 58.724 47.619 4.29 0.00 0.00 2.50
2220 13344 9.125026 GAGGTTCATCAATATGGTTACATTCTT 57.875 33.333 0.00 0.00 38.53 2.52
2225 13349 8.723365 TCATCAATATGGTTACATTCTTAGGGT 58.277 33.333 0.00 0.00 38.53 4.34
2228 13352 6.989155 ATATGGTTACATTCTTAGGGTCGA 57.011 37.500 0.00 0.00 38.53 4.20
2243 13367 1.076559 TCGAGGCCTGATTACGGGA 60.077 57.895 12.00 0.00 44.87 5.14
2245 13369 1.392710 CGAGGCCTGATTACGGGAGT 61.393 60.000 12.00 0.00 44.87 3.85
2251 13375 2.355818 GCCTGATTACGGGAGTTCCTTT 60.356 50.000 0.00 0.00 44.87 3.11
2260 13384 2.356125 CGGGAGTTCCTTTCCATGACAT 60.356 50.000 0.00 0.00 36.40 3.06
2266 13390 4.130118 GTTCCTTTCCATGACATCGCTAT 58.870 43.478 0.00 0.00 0.00 2.97
2273 13397 3.895041 TCCATGACATCGCTATAAGACCA 59.105 43.478 0.00 0.00 0.00 4.02
2286 13410 1.635817 AAGACCACACACTGCCCACT 61.636 55.000 0.00 0.00 0.00 4.00
2314 13438 2.046988 CACACGCCATCTGCTCCA 60.047 61.111 0.00 0.00 38.05 3.86
2320 13444 1.153025 GCCATCTGCTCCATCTGCA 60.153 57.895 0.00 0.00 38.81 4.41
2322 13446 1.271217 GCCATCTGCTCCATCTGCATA 60.271 52.381 0.00 0.00 39.86 3.14
2324 13448 3.687125 CCATCTGCTCCATCTGCATATT 58.313 45.455 0.00 0.00 39.86 1.28
2326 13450 4.523173 CCATCTGCTCCATCTGCATATTTT 59.477 41.667 0.00 0.00 39.86 1.82
2350 13474 7.403312 TTGCTATTATGTTGGCATAAGTTGT 57.597 32.000 6.27 0.00 46.80 3.32
2364 13488 7.143340 GGCATAAGTTGTATCGTGTATCTACA 58.857 38.462 0.00 0.00 0.00 2.74
2394 13524 9.693739 CATACATAAGAGACCTAGGATATGTCT 57.306 37.037 17.98 7.23 46.95 3.41
2414 13545 7.437713 TGTCTTATTAGGACATGACTCCATT 57.562 36.000 0.00 0.00 38.57 3.16
2504 13637 4.154195 CCCTAACAAACTTCATCTTGACGG 59.846 45.833 0.00 0.00 0.00 4.79
2516 13649 4.100035 TCATCTTGACGGATATTCTGCACT 59.900 41.667 0.00 0.00 0.00 4.40
2529 13662 3.334583 TCTGCACTACCTTGGATTCAC 57.665 47.619 0.00 0.00 0.00 3.18
2586 13720 5.938710 CAGATTATTCCATGAGCACTGCTAT 59.061 40.000 2.71 0.00 39.88 2.97
2593 13727 3.070734 CCATGAGCACTGCTATTACTCCT 59.929 47.826 2.71 0.00 39.88 3.69
2635 13771 3.937706 CTGCAACTGTAGATCCTTCCTTG 59.062 47.826 0.00 0.00 0.00 3.61
2659 13797 3.438781 TGTCTTTTTCGCAGTCAACACTT 59.561 39.130 0.00 0.00 0.00 3.16
2702 13841 5.278071 CGTTACTTTATGTTGTGCTCCCAAA 60.278 40.000 0.00 0.00 0.00 3.28
2719 13858 6.019779 TCCCAAATTTCAAAGTATCCGTTG 57.980 37.500 0.00 0.00 0.00 4.10
2758 13898 3.013276 TCACTGTCTGCGTGAAAGTAG 57.987 47.619 2.57 0.00 41.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.586841 TCATGGTTTGATCGGGTTTTCTTT 59.413 37.500 0.00 0.00 0.00 2.52
126 127 2.507484 TGTTTTGATCAGGCACAGGAG 58.493 47.619 0.00 0.00 0.00 3.69
155 156 1.066152 CGTACGGGGACTAAGCTAACC 59.934 57.143 7.57 0.00 0.00 2.85
178 179 4.899239 GGATCACGCGGCCTGGAG 62.899 72.222 12.47 0.00 0.00 3.86
183 728 4.856801 ACCATGGATCACGCGGCC 62.857 66.667 21.47 6.85 0.00 6.13
252 797 5.060662 TCTCTGTGGACTTAGATTGTTCG 57.939 43.478 0.00 0.00 0.00 3.95
271 816 3.914312 TGACTTTGTCGATCTGGTTCTC 58.086 45.455 0.00 0.00 34.95 2.87
278 823 6.652481 AGATGTGAATTTGACTTTGTCGATCT 59.348 34.615 0.00 0.00 34.95 2.75
289 834 7.639039 TGTTCTGTGTAAGATGTGAATTTGAC 58.361 34.615 0.00 0.00 33.93 3.18
384 2839 3.547746 TGCCCCTTTCCGTTATATTCAC 58.452 45.455 0.00 0.00 0.00 3.18
431 7536 6.764308 ATCCTCATTGTGATCATTTCGTTT 57.236 33.333 0.00 0.00 0.00 3.60
446 7551 4.576463 GCTCGTATGTCCAAAATCCTCATT 59.424 41.667 0.00 0.00 0.00 2.57
501 7607 7.880195 ACTGAGACTTAGCATGACTGTATTTTT 59.120 33.333 0.00 0.00 0.00 1.94
502 7608 7.390027 ACTGAGACTTAGCATGACTGTATTTT 58.610 34.615 0.00 0.00 0.00 1.82
503 7609 6.940739 ACTGAGACTTAGCATGACTGTATTT 58.059 36.000 0.00 0.00 0.00 1.40
504 7610 6.537453 ACTGAGACTTAGCATGACTGTATT 57.463 37.500 0.00 0.00 0.00 1.89
505 7611 5.220951 CGACTGAGACTTAGCATGACTGTAT 60.221 44.000 0.00 0.00 0.00 2.29
506 7612 4.095036 CGACTGAGACTTAGCATGACTGTA 59.905 45.833 0.00 0.00 0.00 2.74
507 7613 3.119673 CGACTGAGACTTAGCATGACTGT 60.120 47.826 0.00 0.00 0.00 3.55
508 7614 3.127721 TCGACTGAGACTTAGCATGACTG 59.872 47.826 0.00 0.00 0.00 3.51
509 7615 3.127895 GTCGACTGAGACTTAGCATGACT 59.872 47.826 8.70 0.00 38.09 3.41
510 7616 3.430931 GTCGACTGAGACTTAGCATGAC 58.569 50.000 8.70 0.00 38.09 3.06
511 7617 3.766676 GTCGACTGAGACTTAGCATGA 57.233 47.619 8.70 0.00 38.09 3.07
521 7627 3.661944 ACGAAGTCTTAGTCGACTGAGA 58.338 45.455 30.05 30.05 43.14 3.27
522 7628 4.407496 AACGAAGTCTTAGTCGACTGAG 57.593 45.455 26.80 26.80 45.00 3.35
523 7629 5.468072 ACTTAACGAAGTCTTAGTCGACTGA 59.532 40.000 28.12 19.13 45.00 3.41
524 7630 5.687828 ACTTAACGAAGTCTTAGTCGACTG 58.312 41.667 28.12 12.46 45.00 3.51
525 7631 5.938438 ACTTAACGAAGTCTTAGTCGACT 57.062 39.130 23.66 23.66 45.00 4.18
535 7641 7.683746 AGTATCGACTAAGACTTAACGAAGTC 58.316 38.462 20.16 13.54 46.63 3.01
536 7642 7.608308 AGTATCGACTAAGACTTAACGAAGT 57.392 36.000 20.16 7.52 40.65 3.01
565 7671 9.006839 GCATGGATCTCAATGTAAATCTTATGA 57.993 33.333 0.00 0.00 0.00 2.15
566 7672 8.789762 TGCATGGATCTCAATGTAAATCTTATG 58.210 33.333 0.00 0.00 0.00 1.90
567 7673 8.929260 TGCATGGATCTCAATGTAAATCTTAT 57.071 30.769 0.00 0.00 0.00 1.73
568 7674 8.750515 TTGCATGGATCTCAATGTAAATCTTA 57.249 30.769 0.00 0.00 0.00 2.10
569 7675 7.649533 TTGCATGGATCTCAATGTAAATCTT 57.350 32.000 0.00 0.00 0.00 2.40
570 7676 7.649533 TTTGCATGGATCTCAATGTAAATCT 57.350 32.000 6.70 0.00 0.00 2.40
571 7677 8.882415 ATTTTGCATGGATCTCAATGTAAATC 57.118 30.769 10.42 0.00 30.98 2.17
572 7678 9.675464 AAATTTTGCATGGATCTCAATGTAAAT 57.325 25.926 10.42 7.42 30.98 1.40
574 7680 9.585099 GTAAATTTTGCATGGATCTCAATGTAA 57.415 29.630 0.00 0.00 0.00 2.41
575 7681 8.970020 AGTAAATTTTGCATGGATCTCAATGTA 58.030 29.630 0.00 0.00 0.00 2.29
576 7682 7.844009 AGTAAATTTTGCATGGATCTCAATGT 58.156 30.769 0.00 0.00 0.00 2.71
577 7683 8.712285 AAGTAAATTTTGCATGGATCTCAATG 57.288 30.769 0.00 0.00 0.00 2.82
578 7684 9.729281 AAAAGTAAATTTTGCATGGATCTCAAT 57.271 25.926 0.00 0.00 39.67 2.57
579 7685 9.206870 GAAAAGTAAATTTTGCATGGATCTCAA 57.793 29.630 0.00 0.00 41.24 3.02
580 7686 8.366401 TGAAAAGTAAATTTTGCATGGATCTCA 58.634 29.630 0.00 0.00 41.24 3.27
581 7687 8.761575 TGAAAAGTAAATTTTGCATGGATCTC 57.238 30.769 0.00 0.00 41.24 2.75
582 7688 8.370182 ACTGAAAAGTAAATTTTGCATGGATCT 58.630 29.630 0.00 0.00 41.24 2.75
583 7689 8.538409 ACTGAAAAGTAAATTTTGCATGGATC 57.462 30.769 0.00 0.00 41.24 3.36
584 7690 8.907222 AACTGAAAAGTAAATTTTGCATGGAT 57.093 26.923 0.00 0.00 41.24 3.41
585 7691 8.729805 AAACTGAAAAGTAAATTTTGCATGGA 57.270 26.923 0.00 0.00 41.24 3.41
586 7692 9.437045 GAAAACTGAAAAGTAAATTTTGCATGG 57.563 29.630 0.00 0.00 41.24 3.66
589 7695 9.651913 AGAGAAAACTGAAAAGTAAATTTTGCA 57.348 25.926 0.00 0.00 41.24 4.08
597 7703 8.818057 CGAAAGAGAGAGAAAACTGAAAAGTAA 58.182 33.333 0.00 0.00 0.00 2.24
598 7704 7.042658 GCGAAAGAGAGAGAAAACTGAAAAGTA 60.043 37.037 0.00 0.00 0.00 2.24
599 7705 6.238239 GCGAAAGAGAGAGAAAACTGAAAAGT 60.238 38.462 0.00 0.00 0.00 2.66
600 7706 6.132724 GCGAAAGAGAGAGAAAACTGAAAAG 58.867 40.000 0.00 0.00 0.00 2.27
601 7707 5.584649 TGCGAAAGAGAGAGAAAACTGAAAA 59.415 36.000 0.00 0.00 0.00 2.29
602 7708 5.116180 TGCGAAAGAGAGAGAAAACTGAAA 58.884 37.500 0.00 0.00 0.00 2.69
603 7709 4.693283 TGCGAAAGAGAGAGAAAACTGAA 58.307 39.130 0.00 0.00 0.00 3.02
604 7710 4.322080 TGCGAAAGAGAGAGAAAACTGA 57.678 40.909 0.00 0.00 0.00 3.41
605 7711 4.142945 CCATGCGAAAGAGAGAGAAAACTG 60.143 45.833 0.00 0.00 0.00 3.16
606 7712 3.999663 CCATGCGAAAGAGAGAGAAAACT 59.000 43.478 0.00 0.00 0.00 2.66
607 7713 3.748568 ACCATGCGAAAGAGAGAGAAAAC 59.251 43.478 0.00 0.00 0.00 2.43
608 7714 4.008074 ACCATGCGAAAGAGAGAGAAAA 57.992 40.909 0.00 0.00 0.00 2.29
609 7715 3.685139 ACCATGCGAAAGAGAGAGAAA 57.315 42.857 0.00 0.00 0.00 2.52
610 7716 4.160439 ACATACCATGCGAAAGAGAGAGAA 59.840 41.667 0.00 0.00 0.00 2.87
611 7717 3.701542 ACATACCATGCGAAAGAGAGAGA 59.298 43.478 0.00 0.00 0.00 3.10
612 7718 4.047822 GACATACCATGCGAAAGAGAGAG 58.952 47.826 0.00 0.00 0.00 3.20
613 7719 3.447229 TGACATACCATGCGAAAGAGAGA 59.553 43.478 0.00 0.00 0.00 3.10
614 7720 3.785486 TGACATACCATGCGAAAGAGAG 58.215 45.455 0.00 0.00 0.00 3.20
615 7721 3.885724 TGACATACCATGCGAAAGAGA 57.114 42.857 0.00 0.00 0.00 3.10
616 7722 5.065090 TCAATTGACATACCATGCGAAAGAG 59.935 40.000 3.38 0.00 0.00 2.85
617 7723 4.940654 TCAATTGACATACCATGCGAAAGA 59.059 37.500 3.38 0.00 0.00 2.52
618 7724 5.030295 GTCAATTGACATACCATGCGAAAG 58.970 41.667 29.43 0.00 44.18 2.62
619 7725 4.980590 GTCAATTGACATACCATGCGAAA 58.019 39.130 29.43 0.00 44.18 3.46
620 7726 4.614555 GTCAATTGACATACCATGCGAA 57.385 40.909 29.43 0.00 44.18 4.70
632 7738 6.861065 TTAACCAAGTCTCAGTCAATTGAC 57.139 37.500 27.69 27.69 45.08 3.18
633 7739 7.939039 AGATTTAACCAAGTCTCAGTCAATTGA 59.061 33.333 3.38 3.38 0.00 2.57
634 7740 8.103948 AGATTTAACCAAGTCTCAGTCAATTG 57.896 34.615 0.00 0.00 0.00 2.32
635 7741 7.939039 TGAGATTTAACCAAGTCTCAGTCAATT 59.061 33.333 8.09 0.00 46.61 2.32
636 7742 7.453393 TGAGATTTAACCAAGTCTCAGTCAAT 58.547 34.615 8.09 0.00 46.61 2.57
637 7743 6.826668 TGAGATTTAACCAAGTCTCAGTCAA 58.173 36.000 8.09 0.00 46.61 3.18
638 7744 6.419484 TGAGATTTAACCAAGTCTCAGTCA 57.581 37.500 8.09 0.00 46.61 3.41
643 7749 5.710984 TCGACTGAGATTTAACCAAGTCTC 58.289 41.667 3.67 3.67 44.01 3.36
644 7750 5.723672 TCGACTGAGATTTAACCAAGTCT 57.276 39.130 0.00 0.00 33.74 3.24
645 7751 6.969828 AATCGACTGAGATTTAACCAAGTC 57.030 37.500 0.00 0.00 37.56 3.01
646 7752 8.311836 TCTTAATCGACTGAGATTTAACCAAGT 58.688 33.333 7.99 0.00 40.83 3.16
647 7753 8.596380 GTCTTAATCGACTGAGATTTAACCAAG 58.404 37.037 0.00 6.28 40.83 3.61
648 7754 7.548075 GGTCTTAATCGACTGAGATTTAACCAA 59.452 37.037 0.00 0.00 40.83 3.67
649 7755 7.039882 GGTCTTAATCGACTGAGATTTAACCA 58.960 38.462 0.00 0.00 40.83 3.67
650 7756 7.266400 AGGTCTTAATCGACTGAGATTTAACC 58.734 38.462 0.00 11.36 40.83 2.85
651 7757 9.453325 CTAGGTCTTAATCGACTGAGATTTAAC 57.547 37.037 0.00 5.48 40.83 2.01
652 7758 8.136165 GCTAGGTCTTAATCGACTGAGATTTAA 58.864 37.037 0.00 0.00 40.83 1.52
653 7759 7.255520 GGCTAGGTCTTAATCGACTGAGATTTA 60.256 40.741 0.00 0.00 40.83 1.40
654 7760 6.461788 GGCTAGGTCTTAATCGACTGAGATTT 60.462 42.308 0.00 0.00 40.83 2.17
655 7761 5.010213 GGCTAGGTCTTAATCGACTGAGATT 59.990 44.000 0.00 7.85 42.77 2.40
656 7762 4.521256 GGCTAGGTCTTAATCGACTGAGAT 59.479 45.833 0.00 0.00 34.38 2.75
657 7763 3.884091 GGCTAGGTCTTAATCGACTGAGA 59.116 47.826 0.00 0.00 34.38 3.27
658 7764 3.632604 TGGCTAGGTCTTAATCGACTGAG 59.367 47.826 0.00 0.00 34.38 3.35
659 7765 3.380637 GTGGCTAGGTCTTAATCGACTGA 59.619 47.826 0.00 0.00 34.38 3.41
660 7766 3.130516 TGTGGCTAGGTCTTAATCGACTG 59.869 47.826 0.00 0.00 34.38 3.51
661 7767 3.130693 GTGTGGCTAGGTCTTAATCGACT 59.869 47.826 0.00 0.00 34.38 4.18
662 7768 3.445857 GTGTGGCTAGGTCTTAATCGAC 58.554 50.000 0.00 0.00 0.00 4.20
663 7769 2.429610 GGTGTGGCTAGGTCTTAATCGA 59.570 50.000 0.00 0.00 0.00 3.59
664 7770 2.483188 GGGTGTGGCTAGGTCTTAATCG 60.483 54.545 0.00 0.00 0.00 3.34
665 7771 2.504175 TGGGTGTGGCTAGGTCTTAATC 59.496 50.000 0.00 0.00 0.00 1.75
666 7772 2.557869 TGGGTGTGGCTAGGTCTTAAT 58.442 47.619 0.00 0.00 0.00 1.40
667 7773 2.032965 TGGGTGTGGCTAGGTCTTAA 57.967 50.000 0.00 0.00 0.00 1.85
668 7774 2.032965 TTGGGTGTGGCTAGGTCTTA 57.967 50.000 0.00 0.00 0.00 2.10
669 7775 1.073923 CTTTGGGTGTGGCTAGGTCTT 59.926 52.381 0.00 0.00 0.00 3.01
670 7776 0.693049 CTTTGGGTGTGGCTAGGTCT 59.307 55.000 0.00 0.00 0.00 3.85
671 7777 0.690762 TCTTTGGGTGTGGCTAGGTC 59.309 55.000 0.00 0.00 0.00 3.85
672 7778 1.145571 TTCTTTGGGTGTGGCTAGGT 58.854 50.000 0.00 0.00 0.00 3.08
673 7779 2.286365 TTTCTTTGGGTGTGGCTAGG 57.714 50.000 0.00 0.00 0.00 3.02
674 7780 5.418840 ACATTATTTCTTTGGGTGTGGCTAG 59.581 40.000 0.00 0.00 0.00 3.42
675 7781 5.184864 CACATTATTTCTTTGGGTGTGGCTA 59.815 40.000 0.00 0.00 33.69 3.93
676 7782 4.021192 CACATTATTTCTTTGGGTGTGGCT 60.021 41.667 0.00 0.00 33.69 4.75
677 7783 4.244862 CACATTATTTCTTTGGGTGTGGC 58.755 43.478 0.00 0.00 33.69 5.01
678 7784 5.229423 CACACATTATTTCTTTGGGTGTGG 58.771 41.667 12.71 0.00 46.45 4.17
680 7786 4.283212 CCCACACATTATTTCTTTGGGTGT 59.717 41.667 4.09 0.00 42.01 4.16
681 7787 4.526262 TCCCACACATTATTTCTTTGGGTG 59.474 41.667 3.74 0.00 42.96 4.61
682 7788 4.746466 TCCCACACATTATTTCTTTGGGT 58.254 39.130 3.74 0.00 42.55 4.51
683 7789 5.421693 TCATCCCACACATTATTTCTTTGGG 59.578 40.000 0.00 0.00 43.21 4.12
684 7790 6.377996 TCTCATCCCACACATTATTTCTTTGG 59.622 38.462 0.00 0.00 0.00 3.28
685 7791 7.121759 AGTCTCATCCCACACATTATTTCTTTG 59.878 37.037 0.00 0.00 0.00 2.77
758 11286 9.613428 CTCACCTACTTATCATATTTGTTGGAA 57.387 33.333 0.00 0.00 0.00 3.53
759 11287 8.988060 TCTCACCTACTTATCATATTTGTTGGA 58.012 33.333 0.00 0.00 0.00 3.53
793 11325 2.277084 AGCGATTCCGATTTGTACCAC 58.723 47.619 0.00 0.00 38.22 4.16
794 11326 2.546778 GAGCGATTCCGATTTGTACCA 58.453 47.619 0.00 0.00 38.22 3.25
921 11523 3.043713 CGTGGCTGAAGCGCTTGA 61.044 61.111 30.47 19.90 43.26 3.02
1521 12640 1.712977 CCTTCTCCTCGTACCCGTCG 61.713 65.000 0.00 0.00 35.01 5.12
1522 12641 0.393537 TCCTTCTCCTCGTACCCGTC 60.394 60.000 0.00 0.00 35.01 4.79
1523 12642 0.394080 CTCCTTCTCCTCGTACCCGT 60.394 60.000 0.00 0.00 35.01 5.28
1524 12643 1.102222 CCTCCTTCTCCTCGTACCCG 61.102 65.000 0.00 0.00 0.00 5.28
1525 12644 0.258194 TCCTCCTTCTCCTCGTACCC 59.742 60.000 0.00 0.00 0.00 3.69
1526 12645 1.957877 CATCCTCCTTCTCCTCGTACC 59.042 57.143 0.00 0.00 0.00 3.34
1527 12646 2.882137 CTCATCCTCCTTCTCCTCGTAC 59.118 54.545 0.00 0.00 0.00 3.67
1528 12647 2.158593 CCTCATCCTCCTTCTCCTCGTA 60.159 54.545 0.00 0.00 0.00 3.43
1529 12648 1.410932 CCTCATCCTCCTTCTCCTCGT 60.411 57.143 0.00 0.00 0.00 4.18
1530 12649 1.133637 TCCTCATCCTCCTTCTCCTCG 60.134 57.143 0.00 0.00 0.00 4.63
1531 12650 2.316108 GTCCTCATCCTCCTTCTCCTC 58.684 57.143 0.00 0.00 0.00 3.71
1532 12651 1.410932 CGTCCTCATCCTCCTTCTCCT 60.411 57.143 0.00 0.00 0.00 3.69
1533 12652 1.036707 CGTCCTCATCCTCCTTCTCC 58.963 60.000 0.00 0.00 0.00 3.71
1534 12653 1.679153 GTCGTCCTCATCCTCCTTCTC 59.321 57.143 0.00 0.00 0.00 2.87
1535 12654 1.770294 GTCGTCCTCATCCTCCTTCT 58.230 55.000 0.00 0.00 0.00 2.85
1536 12655 0.382515 CGTCGTCCTCATCCTCCTTC 59.617 60.000 0.00 0.00 0.00 3.46
1537 12656 1.668101 GCGTCGTCCTCATCCTCCTT 61.668 60.000 0.00 0.00 0.00 3.36
1538 12657 2.122167 GCGTCGTCCTCATCCTCCT 61.122 63.158 0.00 0.00 0.00 3.69
1539 12658 2.413765 GCGTCGTCCTCATCCTCC 59.586 66.667 0.00 0.00 0.00 4.30
1540 12659 2.024871 CGCGTCGTCCTCATCCTC 59.975 66.667 0.00 0.00 0.00 3.71
1541 12660 3.518998 CCGCGTCGTCCTCATCCT 61.519 66.667 4.92 0.00 0.00 3.24
1542 12661 3.471244 CTCCGCGTCGTCCTCATCC 62.471 68.421 4.92 0.00 0.00 3.51
1543 12662 2.024871 CTCCGCGTCGTCCTCATC 59.975 66.667 4.92 0.00 0.00 2.92
1544 12663 3.518998 CCTCCGCGTCGTCCTCAT 61.519 66.667 4.92 0.00 0.00 2.90
1545 12664 4.710167 TCCTCCGCGTCGTCCTCA 62.710 66.667 4.92 0.00 0.00 3.86
1546 12665 3.878519 CTCCTCCGCGTCGTCCTC 61.879 72.222 4.92 0.00 0.00 3.71
1549 12668 3.878519 CTCCTCCTCCGCGTCGTC 61.879 72.222 4.92 0.00 0.00 4.20
1697 12817 5.807520 CCTACGAATGCCATAGTTATAGCTG 59.192 44.000 0.00 0.00 0.00 4.24
1717 12837 3.935828 GAGACAGACAAAAGGATGCCTAC 59.064 47.826 0.00 0.00 31.13 3.18
1744 12864 6.169094 ACATTATCAATCCGAGGAATGCTAG 58.831 40.000 2.39 0.00 35.62 3.42
1805 12927 8.895737 AGTAATTCGAAACAAAGGAAGTACAAA 58.104 29.630 0.00 0.00 41.24 2.83
1809 12931 8.441312 ACAAGTAATTCGAAACAAAGGAAGTA 57.559 30.769 0.00 0.00 0.00 2.24
1810 12932 7.329588 ACAAGTAATTCGAAACAAAGGAAGT 57.670 32.000 0.00 0.00 0.00 3.01
1811 12933 6.573725 CGACAAGTAATTCGAAACAAAGGAAG 59.426 38.462 0.00 0.00 37.43 3.46
1812 12934 6.423862 CGACAAGTAATTCGAAACAAAGGAA 58.576 36.000 0.00 0.00 37.43 3.36
1813 12935 5.559417 GCGACAAGTAATTCGAAACAAAGGA 60.559 40.000 0.00 0.00 37.43 3.36
1814 12936 4.611366 GCGACAAGTAATTCGAAACAAAGG 59.389 41.667 0.00 0.00 37.43 3.11
1815 12937 5.201910 TGCGACAAGTAATTCGAAACAAAG 58.798 37.500 0.00 0.00 37.43 2.77
1816 12938 5.158101 TGCGACAAGTAATTCGAAACAAA 57.842 34.783 0.00 0.00 37.43 2.83
1817 12939 4.319190 CCTGCGACAAGTAATTCGAAACAA 60.319 41.667 0.00 0.00 37.43 2.83
1818 12940 3.185594 CCTGCGACAAGTAATTCGAAACA 59.814 43.478 0.00 0.00 37.43 2.83
1819 12941 3.185797 ACCTGCGACAAGTAATTCGAAAC 59.814 43.478 0.00 0.00 37.43 2.78
1820 12942 3.395639 ACCTGCGACAAGTAATTCGAAA 58.604 40.909 0.00 0.00 37.43 3.46
1821 12943 3.034721 ACCTGCGACAAGTAATTCGAA 57.965 42.857 0.00 0.00 37.43 3.71
1822 12944 2.736144 ACCTGCGACAAGTAATTCGA 57.264 45.000 0.00 0.00 37.43 3.71
1823 12945 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1824 12946 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
1825 12947 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
1826 12948 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1827 12949 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1828 12950 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
1829 12951 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
1830 12952 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
1831 12953 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
1832 12954 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
1833 12955 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
1834 12956 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1835 12957 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1836 12958 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
1867 12989 9.878667 TCGTTGTAGAAATGGATGTATCTAAAA 57.121 29.630 0.00 0.00 0.00 1.52
1868 12990 9.529325 CTCGTTGTAGAAATGGATGTATCTAAA 57.471 33.333 0.00 0.00 0.00 1.85
1869 12991 8.692710 ACTCGTTGTAGAAATGGATGTATCTAA 58.307 33.333 0.00 0.00 0.00 2.10
1870 12992 8.234136 ACTCGTTGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 0.00 1.98
1871 12993 7.113658 ACTCGTTGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 0.00 1.98
1872 12994 8.867112 TTACTCGTTGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 32.08 2.24
1873 12995 9.832445 AATTACTCGTTGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 32.08 2.29
1874 12996 9.661563 AAATTACTCGTTGTAGAAATGGATGTA 57.338 29.630 0.00 0.00 32.08 2.29
1875 12997 8.450964 CAAATTACTCGTTGTAGAAATGGATGT 58.549 33.333 0.00 0.00 32.08 3.06
1876 12998 8.664798 TCAAATTACTCGTTGTAGAAATGGATG 58.335 33.333 0.00 0.00 32.08 3.51
1877 12999 8.786826 TCAAATTACTCGTTGTAGAAATGGAT 57.213 30.769 0.00 0.00 32.08 3.41
1878 13000 8.610248 TTCAAATTACTCGTTGTAGAAATGGA 57.390 30.769 0.00 0.00 32.08 3.41
1879 13001 9.113876 GTTTCAAATTACTCGTTGTAGAAATGG 57.886 33.333 0.00 0.00 30.08 3.16
1880 13002 9.878599 AGTTTCAAATTACTCGTTGTAGAAATG 57.121 29.630 0.00 0.00 30.08 2.32
1884 13006 9.199982 CCTTAGTTTCAAATTACTCGTTGTAGA 57.800 33.333 0.00 0.00 32.08 2.59
1885 13007 9.199982 TCCTTAGTTTCAAATTACTCGTTGTAG 57.800 33.333 0.00 0.00 32.08 2.74
1886 13008 9.545105 TTCCTTAGTTTCAAATTACTCGTTGTA 57.455 29.630 0.00 0.00 0.00 2.41
1887 13009 8.441312 TTCCTTAGTTTCAAATTACTCGTTGT 57.559 30.769 0.00 0.00 0.00 3.32
1888 13010 8.557029 ACTTCCTTAGTTTCAAATTACTCGTTG 58.443 33.333 0.00 0.00 31.29 4.10
1889 13011 8.672823 ACTTCCTTAGTTTCAAATTACTCGTT 57.327 30.769 0.00 0.00 31.29 3.85
1890 13012 9.939802 ATACTTCCTTAGTTTCAAATTACTCGT 57.060 29.630 0.00 0.00 38.33 4.18
1903 13025 9.588096 ACCTTCAAATCAAATACTTCCTTAGTT 57.412 29.630 0.00 0.00 38.33 2.24
1913 13035 9.006215 GCACGTTTATACCTTCAAATCAAATAC 57.994 33.333 0.00 0.00 0.00 1.89
1940 13062 5.707764 TCGATTAAACCAACACCATGATTGA 59.292 36.000 0.00 0.00 0.00 2.57
1948 13070 4.320870 TCCTCTTCGATTAAACCAACACC 58.679 43.478 0.00 0.00 0.00 4.16
2070 13192 4.622695 GCATCAGAGATGCCCTTATAGACC 60.623 50.000 18.60 0.00 39.01 3.85
2102 13224 3.969117 ATTGTAACATATGCAGGCGTG 57.031 42.857 1.58 1.01 0.00 5.34
2119 13242 5.063204 TCAACTATGCCCTCGGATTAATTG 58.937 41.667 0.00 0.00 0.00 2.32
2220 13344 1.700955 GTAATCAGGCCTCGACCCTA 58.299 55.000 0.00 0.00 0.00 3.53
2221 13345 1.392710 CGTAATCAGGCCTCGACCCT 61.393 60.000 0.00 0.00 0.00 4.34
2225 13349 1.076559 TCCCGTAATCAGGCCTCGA 60.077 57.895 0.00 4.56 0.00 4.04
2228 13352 0.831307 GAACTCCCGTAATCAGGCCT 59.169 55.000 0.00 0.00 0.00 5.19
2245 13369 2.787473 AGCGATGTCATGGAAAGGAA 57.213 45.000 0.00 0.00 0.00 3.36
2251 13375 3.895041 TGGTCTTATAGCGATGTCATGGA 59.105 43.478 0.00 0.00 0.00 3.41
2260 13384 2.416836 GCAGTGTGTGGTCTTATAGCGA 60.417 50.000 0.00 0.00 0.00 4.93
2266 13390 0.107831 GTGGGCAGTGTGTGGTCTTA 59.892 55.000 0.00 0.00 0.00 2.10
2306 13430 4.202080 GCAAAAATATGCAGATGGAGCAGA 60.202 41.667 0.00 0.00 46.36 4.26
2322 13446 9.889128 AACTTATGCCAACATAATAGCAAAAAT 57.111 25.926 0.00 0.00 45.41 1.82
2324 13448 8.310382 ACAACTTATGCCAACATAATAGCAAAA 58.690 29.630 0.00 0.00 45.41 2.44
2326 13450 7.403312 ACAACTTATGCCAACATAATAGCAA 57.597 32.000 0.00 0.00 45.41 3.91
2345 13469 7.329588 TGTGATGTAGATACACGATACAACT 57.670 36.000 0.00 0.00 39.30 3.16
2405 13535 8.078060 TGATGTGTAGATAGAAAATGGAGTCA 57.922 34.615 0.00 0.00 0.00 3.41
2414 13545 8.446599 TGAGTCGTATGATGTGTAGATAGAAA 57.553 34.615 0.00 0.00 0.00 2.52
2478 13611 6.425721 CGTCAAGATGAAGTTTGTTAGGGTTA 59.574 38.462 0.00 0.00 0.00 2.85
2493 13626 4.100035 AGTGCAGAATATCCGTCAAGATGA 59.900 41.667 0.00 0.00 0.00 2.92
2496 13629 4.202121 GGTAGTGCAGAATATCCGTCAAGA 60.202 45.833 0.00 0.00 0.00 3.02
2504 13637 6.203723 GTGAATCCAAGGTAGTGCAGAATATC 59.796 42.308 0.00 0.00 0.00 1.63
2529 13662 5.937540 TGTACATGGAGTTTTGACACATAGG 59.062 40.000 0.00 0.00 0.00 2.57
2586 13720 5.645497 GGAGTCACGTTTAGTCTAGGAGTAA 59.355 44.000 0.00 0.00 0.00 2.24
2593 13727 3.504906 CAGGTGGAGTCACGTTTAGTCTA 59.495 47.826 0.00 0.00 44.50 2.59
2635 13771 3.542310 GTGTTGACTGCGAAAAAGACAAC 59.458 43.478 10.44 10.44 44.87 3.32
2688 13826 4.081198 ACTTTGAAATTTGGGAGCACAACA 60.081 37.500 0.00 0.00 0.00 3.33
2719 13858 3.669122 GTGATCGGTGTATGATAGCGTTC 59.331 47.826 0.00 0.00 39.76 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.