Multiple sequence alignment - TraesCS7A01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G444500 chr7A 100.000 3228 0 0 1 3228 638852503 638855730 0.000000e+00 5962.0
1 TraesCS7A01G444500 chr7A 92.283 1866 101 18 832 2674 501145869 501144024 0.000000e+00 2608.0
2 TraesCS7A01G444500 chr7A 97.653 554 13 0 2675 3228 290901340 290900787 0.000000e+00 952.0
3 TraesCS7A01G444500 chr7A 97.473 554 14 0 2675 3228 621389378 621388825 0.000000e+00 946.0
4 TraesCS7A01G444500 chr2D 95.629 2082 63 10 619 2674 544195963 544198042 0.000000e+00 3315.0
5 TraesCS7A01G444500 chr2D 93.585 265 16 1 236 500 37526873 37526610 8.390000e-106 394.0
6 TraesCS7A01G444500 chr2D 92.776 263 19 0 236 498 112870950 112871212 6.530000e-102 381.0
7 TraesCS7A01G444500 chr3A 95.284 2078 73 9 620 2673 552543604 552545680 0.000000e+00 3271.0
8 TraesCS7A01G444500 chr3A 93.087 2083 88 14 617 2674 716653337 716655388 0.000000e+00 2998.0
9 TraesCS7A01G444500 chr3A 97.473 554 14 0 2675 3228 572244626 572245179 0.000000e+00 946.0
10 TraesCS7A01G444500 chr1D 94.666 2081 67 18 620 2674 262705050 262702988 0.000000e+00 3188.0
11 TraesCS7A01G444500 chr7B 94.628 2029 84 8 620 2623 670245406 670247434 0.000000e+00 3120.0
12 TraesCS7A01G444500 chr7B 97.000 100 2 1 520 619 599420825 599420923 1.990000e-37 167.0
13 TraesCS7A01G444500 chr3D 94.039 2030 88 10 620 2625 454991148 454989128 0.000000e+00 3048.0
14 TraesCS7A01G444500 chr3D 94.192 1670 59 14 1029 2672 39882246 39880589 0.000000e+00 2512.0
15 TraesCS7A01G444500 chr3D 95.816 956 35 5 1722 2672 316828202 316829157 0.000000e+00 1539.0
16 TraesCS7A01G444500 chr5A 93.803 1904 65 11 619 2499 555245009 555243136 0.000000e+00 2813.0
17 TraesCS7A01G444500 chr5A 97.148 561 12 3 2671 3228 323454066 323454625 0.000000e+00 944.0
18 TraesCS7A01G444500 chr5A 93.487 261 17 0 236 496 585634519 585634779 3.910000e-104 388.0
19 TraesCS7A01G444500 chr2B 91.063 2070 141 30 620 2674 744521878 744523918 0.000000e+00 2758.0
20 TraesCS7A01G444500 chr3B 95.118 1741 64 7 617 2351 129254999 129256724 0.000000e+00 2724.0
21 TraesCS7A01G444500 chr3B 89.023 1075 84 21 657 1702 413421992 413423061 0.000000e+00 1301.0
22 TraesCS7A01G444500 chr3B 93.487 261 13 2 236 496 253893427 253893171 5.050000e-103 385.0
23 TraesCS7A01G444500 chr3B 100.000 31 0 0 1658 1688 129255953 129255983 1.250000e-04 58.4
24 TraesCS7A01G444500 chr2A 92.845 1817 98 9 618 2405 751036342 751034529 0.000000e+00 2606.0
25 TraesCS7A01G444500 chr2A 100.000 33 0 0 1656 1688 740489617 740489649 9.670000e-06 62.1
26 TraesCS7A01G444500 chr1A 97.653 554 13 0 2675 3228 273394326 273393773 0.000000e+00 952.0
27 TraesCS7A01G444500 chr1A 97.117 555 15 1 2674 3228 321465454 321464901 0.000000e+00 935.0
28 TraesCS7A01G444500 chr6A 97.473 554 14 0 2675 3228 358245612 358245059 0.000000e+00 946.0
29 TraesCS7A01G444500 chr6A 97.473 554 14 0 2675 3228 497892082 497891529 0.000000e+00 946.0
30 TraesCS7A01G444500 chr6A 93.487 261 17 0 236 496 138271293 138271033 3.910000e-104 388.0
31 TraesCS7A01G444500 chr4A 97.473 554 14 0 2675 3228 458588722 458589275 0.000000e+00 946.0
32 TraesCS7A01G444500 chr4B 93.536 263 14 3 241 501 56813046 56813307 3.910000e-104 388.0
33 TraesCS7A01G444500 chr4B 91.912 272 22 0 225 496 460331122 460330851 6.530000e-102 381.0
34 TraesCS7A01G444500 chr7D 93.130 262 17 1 236 497 41057259 41057519 1.820000e-102 383.0
35 TraesCS7A01G444500 chr7D 92.481 266 19 1 232 497 98664624 98664360 2.350000e-101 379.0
36 TraesCS7A01G444500 chr7D 92.135 178 13 1 1 178 553216057 553216233 1.920000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G444500 chr7A 638852503 638855730 3227 False 5962.0 5962 100.000 1 3228 1 chr7A.!!$F1 3227
1 TraesCS7A01G444500 chr7A 501144024 501145869 1845 True 2608.0 2608 92.283 832 2674 1 chr7A.!!$R2 1842
2 TraesCS7A01G444500 chr7A 290900787 290901340 553 True 952.0 952 97.653 2675 3228 1 chr7A.!!$R1 553
3 TraesCS7A01G444500 chr7A 621388825 621389378 553 True 946.0 946 97.473 2675 3228 1 chr7A.!!$R3 553
4 TraesCS7A01G444500 chr2D 544195963 544198042 2079 False 3315.0 3315 95.629 619 2674 1 chr2D.!!$F2 2055
5 TraesCS7A01G444500 chr3A 552543604 552545680 2076 False 3271.0 3271 95.284 620 2673 1 chr3A.!!$F1 2053
6 TraesCS7A01G444500 chr3A 716653337 716655388 2051 False 2998.0 2998 93.087 617 2674 1 chr3A.!!$F3 2057
7 TraesCS7A01G444500 chr3A 572244626 572245179 553 False 946.0 946 97.473 2675 3228 1 chr3A.!!$F2 553
8 TraesCS7A01G444500 chr1D 262702988 262705050 2062 True 3188.0 3188 94.666 620 2674 1 chr1D.!!$R1 2054
9 TraesCS7A01G444500 chr7B 670245406 670247434 2028 False 3120.0 3120 94.628 620 2623 1 chr7B.!!$F2 2003
10 TraesCS7A01G444500 chr3D 454989128 454991148 2020 True 3048.0 3048 94.039 620 2625 1 chr3D.!!$R2 2005
11 TraesCS7A01G444500 chr3D 39880589 39882246 1657 True 2512.0 2512 94.192 1029 2672 1 chr3D.!!$R1 1643
12 TraesCS7A01G444500 chr3D 316828202 316829157 955 False 1539.0 1539 95.816 1722 2672 1 chr3D.!!$F1 950
13 TraesCS7A01G444500 chr5A 555243136 555245009 1873 True 2813.0 2813 93.803 619 2499 1 chr5A.!!$R1 1880
14 TraesCS7A01G444500 chr5A 323454066 323454625 559 False 944.0 944 97.148 2671 3228 1 chr5A.!!$F1 557
15 TraesCS7A01G444500 chr2B 744521878 744523918 2040 False 2758.0 2758 91.063 620 2674 1 chr2B.!!$F1 2054
16 TraesCS7A01G444500 chr3B 129254999 129256724 1725 False 1391.2 2724 97.559 617 2351 2 chr3B.!!$F2 1734
17 TraesCS7A01G444500 chr3B 413421992 413423061 1069 False 1301.0 1301 89.023 657 1702 1 chr3B.!!$F1 1045
18 TraesCS7A01G444500 chr2A 751034529 751036342 1813 True 2606.0 2606 92.845 618 2405 1 chr2A.!!$R1 1787
19 TraesCS7A01G444500 chr1A 273393773 273394326 553 True 952.0 952 97.653 2675 3228 1 chr1A.!!$R1 553
20 TraesCS7A01G444500 chr1A 321464901 321465454 553 True 935.0 935 97.117 2674 3228 1 chr1A.!!$R2 554
21 TraesCS7A01G444500 chr6A 358245059 358245612 553 True 946.0 946 97.473 2675 3228 1 chr6A.!!$R2 553
22 TraesCS7A01G444500 chr6A 497891529 497892082 553 True 946.0 946 97.473 2675 3228 1 chr6A.!!$R3 553
23 TraesCS7A01G444500 chr4A 458588722 458589275 553 False 946.0 946 97.473 2675 3228 1 chr4A.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.038744 TCCGGACGGAGGAAGTAGTT 59.961 55.0 9.76 0.0 39.76 2.24 F
1230 1257 0.037303 AGGGCACTGAACCTGATGTG 59.963 55.0 0.00 0.0 35.30 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1280 1.079819 GCAACACGCCTCTCTGCTA 60.080 57.895 0.0 0.0 32.94 3.49 R
2658 2857 1.888215 TACACTAGGGTCTATCGGCG 58.112 55.000 0.0 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.235939 CAGCTGTGCTATACTACCTCTG 57.764 50.000 5.25 0.00 36.40 3.35
28 29 3.634448 CAGCTGTGCTATACTACCTCTGT 59.366 47.826 5.25 0.00 36.40 3.41
29 30 3.886505 AGCTGTGCTATACTACCTCTGTC 59.113 47.826 0.00 0.00 36.99 3.51
30 31 3.004944 GCTGTGCTATACTACCTCTGTCC 59.995 52.174 0.00 0.00 0.00 4.02
31 32 3.211865 TGTGCTATACTACCTCTGTCCG 58.788 50.000 0.00 0.00 0.00 4.79
32 33 2.553172 GTGCTATACTACCTCTGTCCGG 59.447 54.545 0.00 0.00 0.00 5.14
33 34 2.161030 GCTATACTACCTCTGTCCGGG 58.839 57.143 0.00 0.00 0.00 5.73
34 35 2.488710 GCTATACTACCTCTGTCCGGGT 60.489 54.545 0.00 0.00 39.40 5.28
35 36 2.842645 ATACTACCTCTGTCCGGGTT 57.157 50.000 0.00 0.00 37.07 4.11
36 37 2.610438 TACTACCTCTGTCCGGGTTT 57.390 50.000 0.00 0.00 37.07 3.27
37 38 2.610438 ACTACCTCTGTCCGGGTTTA 57.390 50.000 0.00 0.00 37.07 2.01
38 39 2.893424 ACTACCTCTGTCCGGGTTTAA 58.107 47.619 0.00 0.00 37.07 1.52
39 40 3.447950 ACTACCTCTGTCCGGGTTTAAT 58.552 45.455 0.00 0.00 37.07 1.40
40 41 3.842436 ACTACCTCTGTCCGGGTTTAATT 59.158 43.478 0.00 0.00 37.07 1.40
41 42 5.025453 ACTACCTCTGTCCGGGTTTAATTA 58.975 41.667 0.00 0.00 37.07 1.40
42 43 4.482952 ACCTCTGTCCGGGTTTAATTAG 57.517 45.455 0.00 0.00 30.80 1.73
43 44 3.842436 ACCTCTGTCCGGGTTTAATTAGT 59.158 43.478 0.00 0.00 30.80 2.24
44 45 4.081254 ACCTCTGTCCGGGTTTAATTAGTC 60.081 45.833 0.00 0.00 30.80 2.59
45 46 4.439968 CTCTGTCCGGGTTTAATTAGTCC 58.560 47.826 0.00 0.98 0.00 3.85
46 47 3.198417 TCTGTCCGGGTTTAATTAGTCCC 59.802 47.826 0.00 13.74 36.82 4.46
47 48 2.239402 TGTCCGGGTTTAATTAGTCCCC 59.761 50.000 16.41 11.60 36.84 4.81
48 49 1.845791 TCCGGGTTTAATTAGTCCCCC 59.154 52.381 16.41 9.72 36.84 5.40
49 50 1.848388 CCGGGTTTAATTAGTCCCCCT 59.152 52.381 16.41 0.00 36.84 4.79
50 51 2.242965 CCGGGTTTAATTAGTCCCCCTT 59.757 50.000 16.41 0.00 36.84 3.95
51 52 3.284617 CGGGTTTAATTAGTCCCCCTTG 58.715 50.000 16.41 4.42 36.84 3.61
52 53 3.308617 CGGGTTTAATTAGTCCCCCTTGT 60.309 47.826 16.41 0.00 36.84 3.16
53 54 4.080413 CGGGTTTAATTAGTCCCCCTTGTA 60.080 45.833 16.41 0.00 36.84 2.41
54 55 5.398239 CGGGTTTAATTAGTCCCCCTTGTAT 60.398 44.000 16.41 0.00 36.84 2.29
55 56 6.437755 GGGTTTAATTAGTCCCCCTTGTATT 58.562 40.000 13.09 0.00 34.32 1.89
56 57 6.899075 GGGTTTAATTAGTCCCCCTTGTATTT 59.101 38.462 13.09 0.00 34.32 1.40
57 58 7.400915 GGGTTTAATTAGTCCCCCTTGTATTTT 59.599 37.037 13.09 0.00 34.32 1.82
58 59 8.255206 GGTTTAATTAGTCCCCCTTGTATTTTG 58.745 37.037 0.00 0.00 0.00 2.44
59 60 9.027202 GTTTAATTAGTCCCCCTTGTATTTTGA 57.973 33.333 0.00 0.00 0.00 2.69
60 61 9.603189 TTTAATTAGTCCCCCTTGTATTTTGAA 57.397 29.630 0.00 0.00 0.00 2.69
61 62 9.777008 TTAATTAGTCCCCCTTGTATTTTGAAT 57.223 29.630 0.00 0.00 0.00 2.57
62 63 7.898014 ATTAGTCCCCCTTGTATTTTGAATC 57.102 36.000 0.00 0.00 0.00 2.52
63 64 5.269554 AGTCCCCCTTGTATTTTGAATCA 57.730 39.130 0.00 0.00 0.00 2.57
64 65 5.650283 AGTCCCCCTTGTATTTTGAATCAA 58.350 37.500 0.00 0.00 0.00 2.57
65 66 6.081356 AGTCCCCCTTGTATTTTGAATCAAA 58.919 36.000 4.03 4.03 0.00 2.69
66 67 6.730507 AGTCCCCCTTGTATTTTGAATCAAAT 59.269 34.615 9.41 3.07 33.19 2.32
67 68 7.237471 AGTCCCCCTTGTATTTTGAATCAAATT 59.763 33.333 9.41 8.61 33.19 1.82
68 69 7.882791 GTCCCCCTTGTATTTTGAATCAAATTT 59.117 33.333 9.41 3.42 33.19 1.82
69 70 8.443979 TCCCCCTTGTATTTTGAATCAAATTTT 58.556 29.630 9.41 1.04 33.19 1.82
70 71 8.513774 CCCCCTTGTATTTTGAATCAAATTTTG 58.486 33.333 9.41 2.59 33.19 2.44
71 72 9.282569 CCCCTTGTATTTTGAATCAAATTTTGA 57.717 29.630 13.88 13.88 45.01 2.69
93 94 9.973450 TTTGATCATAGATCTAACTAGCAGAAC 57.027 33.333 6.52 0.00 0.00 3.01
94 95 8.697507 TGATCATAGATCTAACTAGCAGAACA 57.302 34.615 6.52 0.03 0.00 3.18
95 96 8.572185 TGATCATAGATCTAACTAGCAGAACAC 58.428 37.037 6.52 0.00 0.00 3.32
96 97 7.881775 TCATAGATCTAACTAGCAGAACACA 57.118 36.000 6.52 0.00 0.00 3.72
97 98 8.293699 TCATAGATCTAACTAGCAGAACACAA 57.706 34.615 6.52 0.00 0.00 3.33
98 99 8.409371 TCATAGATCTAACTAGCAGAACACAAG 58.591 37.037 6.52 0.00 0.00 3.16
99 100 6.597832 AGATCTAACTAGCAGAACACAAGT 57.402 37.500 0.00 0.00 0.00 3.16
100 101 6.998802 AGATCTAACTAGCAGAACACAAGTT 58.001 36.000 0.00 0.00 41.64 2.66
101 102 8.123639 AGATCTAACTAGCAGAACACAAGTTA 57.876 34.615 0.00 0.00 38.30 2.24
102 103 8.247562 AGATCTAACTAGCAGAACACAAGTTAG 58.752 37.037 12.24 12.24 45.61 2.34
104 105 8.123639 TCTAACTAGCAGAACACAAGTTAGAT 57.876 34.615 15.61 0.00 46.78 1.98
105 106 8.029522 TCTAACTAGCAGAACACAAGTTAGATG 58.970 37.037 15.61 0.00 46.78 2.90
106 107 4.932200 ACTAGCAGAACACAAGTTAGATGC 59.068 41.667 0.00 0.00 39.85 3.91
107 108 3.077359 AGCAGAACACAAGTTAGATGCC 58.923 45.455 0.00 0.00 40.15 4.40
108 109 2.813754 GCAGAACACAAGTTAGATGCCA 59.186 45.455 0.00 0.00 38.30 4.92
109 110 3.365364 GCAGAACACAAGTTAGATGCCAC 60.365 47.826 0.00 0.00 38.30 5.01
110 111 3.814842 CAGAACACAAGTTAGATGCCACA 59.185 43.478 0.00 0.00 38.30 4.17
111 112 4.275689 CAGAACACAAGTTAGATGCCACAA 59.724 41.667 0.00 0.00 38.30 3.33
112 113 4.887071 AGAACACAAGTTAGATGCCACAAA 59.113 37.500 0.00 0.00 38.30 2.83
113 114 5.359576 AGAACACAAGTTAGATGCCACAAAA 59.640 36.000 0.00 0.00 38.30 2.44
114 115 5.590530 ACACAAGTTAGATGCCACAAAAA 57.409 34.783 0.00 0.00 0.00 1.94
146 147 9.912634 ATTGTCGATTCATATTTGAACAAAAGT 57.087 25.926 0.33 0.00 44.36 2.66
147 148 9.743057 TTGTCGATTCATATTTGAACAAAAGTT 57.257 25.926 0.33 0.00 44.36 2.66
148 149 9.743057 TGTCGATTCATATTTGAACAAAAGTTT 57.257 25.926 0.33 0.00 44.36 2.66
192 193 9.705290 ACTGTATCAAAATTTGACCCAAAATAC 57.295 29.630 10.91 8.22 43.48 1.89
193 194 9.703892 CTGTATCAAAATTTGACCCAAAATACA 57.296 29.630 10.91 11.94 43.48 2.29
196 197 8.620116 ATCAAAATTTGACCCAAAATACAAGG 57.380 30.769 10.91 0.00 43.48 3.61
215 216 4.701651 AGGGGACTTAATAAATCCGGAC 57.298 45.455 6.12 0.00 37.44 4.79
216 217 3.070590 AGGGGACTTAATAAATCCGGACG 59.929 47.826 6.12 0.00 37.44 4.79
217 218 3.396560 GGGACTTAATAAATCCGGACGG 58.603 50.000 6.12 3.96 32.90 4.79
226 227 4.651867 TCCGGACGGAGGAAGTAG 57.348 61.111 9.76 0.00 39.76 2.57
227 228 1.687612 TCCGGACGGAGGAAGTAGT 59.312 57.895 9.76 0.00 39.76 2.73
228 229 0.038744 TCCGGACGGAGGAAGTAGTT 59.961 55.000 9.76 0.00 39.76 2.24
229 230 0.172803 CCGGACGGAGGAAGTAGTTG 59.827 60.000 4.40 0.00 37.50 3.16
230 231 0.886563 CGGACGGAGGAAGTAGTTGT 59.113 55.000 0.00 0.00 0.00 3.32
231 232 1.271656 CGGACGGAGGAAGTAGTTGTT 59.728 52.381 0.00 0.00 0.00 2.83
232 233 2.288640 CGGACGGAGGAAGTAGTTGTTT 60.289 50.000 0.00 0.00 0.00 2.83
233 234 3.064931 GGACGGAGGAAGTAGTTGTTTG 58.935 50.000 0.00 0.00 0.00 2.93
234 235 3.493873 GGACGGAGGAAGTAGTTGTTTGT 60.494 47.826 0.00 0.00 0.00 2.83
235 236 4.124970 GACGGAGGAAGTAGTTGTTTGTT 58.875 43.478 0.00 0.00 0.00 2.83
236 237 5.280654 ACGGAGGAAGTAGTTGTTTGTTA 57.719 39.130 0.00 0.00 0.00 2.41
237 238 5.052481 ACGGAGGAAGTAGTTGTTTGTTAC 58.948 41.667 0.00 0.00 0.00 2.50
238 239 5.163374 ACGGAGGAAGTAGTTGTTTGTTACT 60.163 40.000 0.00 0.00 0.00 2.24
239 240 5.404667 CGGAGGAAGTAGTTGTTTGTTACTC 59.595 44.000 0.00 0.00 0.00 2.59
240 241 5.699915 GGAGGAAGTAGTTGTTTGTTACTCC 59.300 44.000 0.00 0.00 33.68 3.85
241 242 5.618236 AGGAAGTAGTTGTTTGTTACTCCC 58.382 41.667 0.00 0.00 0.00 4.30
242 243 5.368816 AGGAAGTAGTTGTTTGTTACTCCCT 59.631 40.000 0.00 0.00 0.00 4.20
243 244 5.699915 GGAAGTAGTTGTTTGTTACTCCCTC 59.300 44.000 0.00 0.00 0.00 4.30
244 245 6.464039 GGAAGTAGTTGTTTGTTACTCCCTCT 60.464 42.308 0.00 0.00 0.00 3.69
245 246 5.855045 AGTAGTTGTTTGTTACTCCCTCTG 58.145 41.667 0.00 0.00 0.00 3.35
246 247 4.772886 AGTTGTTTGTTACTCCCTCTGT 57.227 40.909 0.00 0.00 0.00 3.41
247 248 5.112129 AGTTGTTTGTTACTCCCTCTGTT 57.888 39.130 0.00 0.00 0.00 3.16
248 249 5.506708 AGTTGTTTGTTACTCCCTCTGTTT 58.493 37.500 0.00 0.00 0.00 2.83
249 250 5.589050 AGTTGTTTGTTACTCCCTCTGTTTC 59.411 40.000 0.00 0.00 0.00 2.78
250 251 5.367945 TGTTTGTTACTCCCTCTGTTTCT 57.632 39.130 0.00 0.00 0.00 2.52
251 252 5.751586 TGTTTGTTACTCCCTCTGTTTCTT 58.248 37.500 0.00 0.00 0.00 2.52
252 253 6.184789 TGTTTGTTACTCCCTCTGTTTCTTT 58.815 36.000 0.00 0.00 0.00 2.52
253 254 6.661805 TGTTTGTTACTCCCTCTGTTTCTTTT 59.338 34.615 0.00 0.00 0.00 2.27
254 255 7.177744 TGTTTGTTACTCCCTCTGTTTCTTTTT 59.822 33.333 0.00 0.00 0.00 1.94
255 256 8.680001 GTTTGTTACTCCCTCTGTTTCTTTTTA 58.320 33.333 0.00 0.00 0.00 1.52
256 257 8.446599 TTGTTACTCCCTCTGTTTCTTTTTAG 57.553 34.615 0.00 0.00 0.00 1.85
257 258 7.571025 TGTTACTCCCTCTGTTTCTTTTTAGT 58.429 34.615 0.00 0.00 0.00 2.24
258 259 7.713942 TGTTACTCCCTCTGTTTCTTTTTAGTC 59.286 37.037 0.00 0.00 0.00 2.59
259 260 6.502074 ACTCCCTCTGTTTCTTTTTAGTCT 57.498 37.500 0.00 0.00 0.00 3.24
260 261 6.292150 ACTCCCTCTGTTTCTTTTTAGTCTG 58.708 40.000 0.00 0.00 0.00 3.51
261 262 5.063880 TCCCTCTGTTTCTTTTTAGTCTGC 58.936 41.667 0.00 0.00 0.00 4.26
262 263 4.821805 CCCTCTGTTTCTTTTTAGTCTGCA 59.178 41.667 0.00 0.00 0.00 4.41
263 264 5.474876 CCCTCTGTTTCTTTTTAGTCTGCAT 59.525 40.000 0.00 0.00 0.00 3.96
264 265 6.655003 CCCTCTGTTTCTTTTTAGTCTGCATA 59.345 38.462 0.00 0.00 0.00 3.14
265 266 7.337942 CCCTCTGTTTCTTTTTAGTCTGCATAT 59.662 37.037 0.00 0.00 0.00 1.78
266 267 9.383519 CCTCTGTTTCTTTTTAGTCTGCATATA 57.616 33.333 0.00 0.00 0.00 0.86
277 278 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
278 279 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
279 280 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
280 281 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
281 282 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
282 283 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
283 284 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
284 285 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
285 286 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
286 287 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
292 293 9.750125 AAGATTTGGTCAAAGTCAAACTTTATC 57.250 29.630 4.86 4.34 45.84 1.75
293 294 8.912988 AGATTTGGTCAAAGTCAAACTTTATCA 58.087 29.630 4.86 2.37 45.84 2.15
294 295 9.528018 GATTTGGTCAAAGTCAAACTTTATCAA 57.472 29.630 4.86 7.28 45.84 2.57
295 296 8.696410 TTTGGTCAAAGTCAAACTTTATCAAC 57.304 30.769 4.86 2.68 45.84 3.18
296 297 7.639113 TGGTCAAAGTCAAACTTTATCAACT 57.361 32.000 4.86 0.00 45.84 3.16
297 298 8.062065 TGGTCAAAGTCAAACTTTATCAACTT 57.938 30.769 4.86 0.00 45.84 2.66
298 299 8.527810 TGGTCAAAGTCAAACTTTATCAACTTT 58.472 29.630 4.86 0.00 45.84 2.66
299 300 8.807581 GGTCAAAGTCAAACTTTATCAACTTTG 58.192 33.333 15.91 15.91 45.84 2.77
458 459 7.846644 ACTTTGCAAAGTTTGATTTTGATCA 57.153 28.000 33.85 2.20 46.52 2.92
459 460 8.266392 ACTTTGCAAAGTTTGATTTTGATCAA 57.734 26.923 33.85 3.38 46.52 2.57
460 461 8.728833 ACTTTGCAAAGTTTGATTTTGATCAAA 58.271 25.926 33.85 16.91 46.52 2.69
487 488 9.834628 TCTTATATGCAAACTAAAAAGAAACGG 57.165 29.630 0.00 0.00 0.00 4.44
488 489 9.834628 CTTATATGCAAACTAAAAAGAAACGGA 57.165 29.630 0.00 0.00 0.00 4.69
489 490 9.834628 TTATATGCAAACTAAAAAGAAACGGAG 57.165 29.630 0.00 0.00 0.00 4.63
490 491 4.927422 TGCAAACTAAAAAGAAACGGAGG 58.073 39.130 0.00 0.00 0.00 4.30
491 492 4.202070 TGCAAACTAAAAAGAAACGGAGGG 60.202 41.667 0.00 0.00 0.00 4.30
492 493 4.037089 GCAAACTAAAAAGAAACGGAGGGA 59.963 41.667 0.00 0.00 0.00 4.20
493 494 5.758924 CAAACTAAAAAGAAACGGAGGGAG 58.241 41.667 0.00 0.00 0.00 4.30
494 495 4.701651 ACTAAAAAGAAACGGAGGGAGT 57.298 40.909 0.00 0.00 0.00 3.85
495 496 5.813513 ACTAAAAAGAAACGGAGGGAGTA 57.186 39.130 0.00 0.00 0.00 2.59
496 497 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
497 498 4.426736 AAAAAGAAACGGAGGGAGTACA 57.573 40.909 0.00 0.00 0.00 2.90
498 499 4.426736 AAAAGAAACGGAGGGAGTACAA 57.573 40.909 0.00 0.00 0.00 2.41
499 500 4.635699 AAAGAAACGGAGGGAGTACAAT 57.364 40.909 0.00 0.00 0.00 2.71
500 501 4.635699 AAGAAACGGAGGGAGTACAATT 57.364 40.909 0.00 0.00 0.00 2.32
501 502 4.203654 AGAAACGGAGGGAGTACAATTC 57.796 45.455 0.00 0.00 0.00 2.17
502 503 3.838903 AGAAACGGAGGGAGTACAATTCT 59.161 43.478 0.00 0.00 0.00 2.40
503 504 3.889520 AACGGAGGGAGTACAATTCTC 57.110 47.619 0.00 0.00 0.00 2.87
504 505 3.103080 ACGGAGGGAGTACAATTCTCT 57.897 47.619 0.00 0.00 33.06 3.10
505 506 4.246712 ACGGAGGGAGTACAATTCTCTA 57.753 45.455 0.00 0.00 33.06 2.43
506 507 4.208746 ACGGAGGGAGTACAATTCTCTAG 58.791 47.826 0.00 0.00 33.06 2.43
507 508 3.004944 CGGAGGGAGTACAATTCTCTAGC 59.995 52.174 0.00 0.00 33.06 3.42
508 509 3.961408 GGAGGGAGTACAATTCTCTAGCA 59.039 47.826 0.00 0.00 33.06 3.49
509 510 4.406003 GGAGGGAGTACAATTCTCTAGCAA 59.594 45.833 0.00 0.00 33.06 3.91
510 511 5.346181 AGGGAGTACAATTCTCTAGCAAC 57.654 43.478 0.00 0.00 33.06 4.17
511 512 4.113354 GGGAGTACAATTCTCTAGCAACG 58.887 47.826 0.00 0.00 33.06 4.10
512 513 4.142227 GGGAGTACAATTCTCTAGCAACGA 60.142 45.833 0.00 0.00 33.06 3.85
513 514 5.452077 GGGAGTACAATTCTCTAGCAACGAT 60.452 44.000 0.00 0.00 33.06 3.73
514 515 5.688176 GGAGTACAATTCTCTAGCAACGATC 59.312 44.000 0.00 0.00 33.06 3.69
515 516 6.208988 AGTACAATTCTCTAGCAACGATCA 57.791 37.500 0.00 0.00 0.00 2.92
516 517 6.631016 AGTACAATTCTCTAGCAACGATCAA 58.369 36.000 0.00 0.00 0.00 2.57
517 518 7.268586 AGTACAATTCTCTAGCAACGATCAAT 58.731 34.615 0.00 0.00 0.00 2.57
518 519 8.414003 AGTACAATTCTCTAGCAACGATCAATA 58.586 33.333 0.00 0.00 0.00 1.90
519 520 7.706281 ACAATTCTCTAGCAACGATCAATAG 57.294 36.000 0.00 0.00 0.00 1.73
520 521 6.201806 ACAATTCTCTAGCAACGATCAATAGC 59.798 38.462 0.00 0.00 0.00 2.97
521 522 4.244425 TCTCTAGCAACGATCAATAGCC 57.756 45.455 0.00 0.00 0.00 3.93
522 523 3.891977 TCTCTAGCAACGATCAATAGCCT 59.108 43.478 0.00 0.00 0.00 4.58
523 524 3.982475 TCTAGCAACGATCAATAGCCTG 58.018 45.455 0.00 0.00 0.00 4.85
524 525 2.698855 AGCAACGATCAATAGCCTGT 57.301 45.000 0.00 0.00 0.00 4.00
525 526 3.819564 AGCAACGATCAATAGCCTGTA 57.180 42.857 0.00 0.00 0.00 2.74
526 527 4.342862 AGCAACGATCAATAGCCTGTAT 57.657 40.909 0.00 0.00 0.00 2.29
527 528 4.060900 AGCAACGATCAATAGCCTGTATG 58.939 43.478 0.00 0.00 0.00 2.39
528 529 4.058124 GCAACGATCAATAGCCTGTATGA 58.942 43.478 0.00 0.00 0.00 2.15
529 530 4.084328 GCAACGATCAATAGCCTGTATGAC 60.084 45.833 0.00 0.00 0.00 3.06
530 531 3.902150 ACGATCAATAGCCTGTATGACG 58.098 45.455 0.00 0.00 0.00 4.35
531 532 3.318275 ACGATCAATAGCCTGTATGACGT 59.682 43.478 0.00 0.00 0.00 4.34
532 533 3.914966 CGATCAATAGCCTGTATGACGTC 59.085 47.826 9.11 9.11 0.00 4.34
533 534 4.556699 CGATCAATAGCCTGTATGACGTCA 60.557 45.833 22.48 22.48 0.00 4.35
534 535 4.041740 TCAATAGCCTGTATGACGTCAC 57.958 45.455 22.71 10.01 0.00 3.67
535 536 3.445805 TCAATAGCCTGTATGACGTCACA 59.554 43.478 22.71 14.48 0.00 3.58
536 537 4.099419 TCAATAGCCTGTATGACGTCACAT 59.901 41.667 22.71 8.85 0.00 3.21
537 538 4.672587 ATAGCCTGTATGACGTCACATT 57.327 40.909 22.71 8.01 0.00 2.71
538 539 5.784578 ATAGCCTGTATGACGTCACATTA 57.215 39.130 22.71 6.85 0.00 1.90
539 540 4.672587 AGCCTGTATGACGTCACATTAT 57.327 40.909 22.71 7.17 0.00 1.28
540 541 5.023533 AGCCTGTATGACGTCACATTATT 57.976 39.130 22.71 6.34 0.00 1.40
541 542 4.811024 AGCCTGTATGACGTCACATTATTG 59.189 41.667 22.71 7.62 0.00 1.90
542 543 4.570772 GCCTGTATGACGTCACATTATTGT 59.429 41.667 22.71 4.68 36.15 2.71
543 544 5.276868 GCCTGTATGACGTCACATTATTGTC 60.277 44.000 22.71 0.00 32.34 3.18
544 545 6.042777 CCTGTATGACGTCACATTATTGTCT 58.957 40.000 22.71 3.05 32.34 3.41
545 546 6.535150 CCTGTATGACGTCACATTATTGTCTT 59.465 38.462 22.71 2.47 32.34 3.01
546 547 7.064609 CCTGTATGACGTCACATTATTGTCTTT 59.935 37.037 22.71 2.24 32.34 2.52
547 548 8.317891 TGTATGACGTCACATTATTGTCTTTT 57.682 30.769 22.71 1.75 32.34 2.27
548 549 8.440059 TGTATGACGTCACATTATTGTCTTTTC 58.560 33.333 22.71 0.00 32.34 2.29
549 550 6.236017 TGACGTCACATTATTGTCTTTTCC 57.764 37.500 15.76 0.00 32.34 3.13
550 551 5.995282 TGACGTCACATTATTGTCTTTTCCT 59.005 36.000 15.76 0.00 32.34 3.36
551 552 7.156000 TGACGTCACATTATTGTCTTTTCCTA 58.844 34.615 15.76 0.00 32.34 2.94
552 553 7.658167 TGACGTCACATTATTGTCTTTTCCTAA 59.342 33.333 15.76 0.00 32.34 2.69
553 554 8.385898 ACGTCACATTATTGTCTTTTCCTAAA 57.614 30.769 0.00 0.00 32.34 1.85
554 555 8.504005 ACGTCACATTATTGTCTTTTCCTAAAG 58.496 33.333 0.00 0.00 41.74 1.85
555 556 8.717821 CGTCACATTATTGTCTTTTCCTAAAGA 58.282 33.333 0.00 0.00 45.68 2.52
567 568 8.383318 TCTTTTCCTAAAGAACACAAGAGATG 57.617 34.615 0.00 0.00 45.08 2.90
568 569 8.210946 TCTTTTCCTAAAGAACACAAGAGATGA 58.789 33.333 0.00 0.00 45.08 2.92
569 570 8.746052 TTTTCCTAAAGAACACAAGAGATGAA 57.254 30.769 0.00 0.00 32.95 2.57
570 571 8.924511 TTTCCTAAAGAACACAAGAGATGAAT 57.075 30.769 0.00 0.00 32.95 2.57
576 577 8.443953 AAAGAACACAAGAGATGAATATAGGC 57.556 34.615 0.00 0.00 0.00 3.93
577 578 7.129457 AGAACACAAGAGATGAATATAGGCA 57.871 36.000 0.00 0.00 0.00 4.75
578 579 7.743749 AGAACACAAGAGATGAATATAGGCAT 58.256 34.615 0.00 0.00 0.00 4.40
579 580 8.874156 AGAACACAAGAGATGAATATAGGCATA 58.126 33.333 0.00 0.00 0.00 3.14
580 581 9.494271 GAACACAAGAGATGAATATAGGCATAA 57.506 33.333 0.00 0.00 0.00 1.90
581 582 9.499479 AACACAAGAGATGAATATAGGCATAAG 57.501 33.333 0.00 0.00 0.00 1.73
582 583 8.654997 ACACAAGAGATGAATATAGGCATAAGT 58.345 33.333 0.00 0.00 0.00 2.24
583 584 9.499479 CACAAGAGATGAATATAGGCATAAGTT 57.501 33.333 0.00 0.00 0.00 2.66
681 683 4.201783 GCAGGAACCACACATATACGAAAC 60.202 45.833 0.00 0.00 0.00 2.78
810 819 1.383523 TGGCAACATTGTTCACACGA 58.616 45.000 0.00 0.00 46.17 4.35
884 905 4.038080 CAAACACCCCGAAGCGGC 62.038 66.667 0.00 0.00 46.86 6.53
949 974 2.989253 TCTGCTCCCGCTCGTTCA 60.989 61.111 0.00 0.00 36.97 3.18
1184 1211 0.622665 CCTTTGCACCTCCAGATCCT 59.377 55.000 0.00 0.00 0.00 3.24
1230 1257 0.037303 AGGGCACTGAACCTGATGTG 59.963 55.000 0.00 0.00 35.30 3.21
1253 1280 0.111061 TGCAATGAACACTCCCTGCT 59.889 50.000 0.00 0.00 32.15 4.24
1344 1371 8.704849 AGGTATGTGCCAAATTTATGCTAATA 57.295 30.769 11.74 7.67 0.00 0.98
1533 1563 6.207417 AGGTCATTGTTTATATGCCAGTATGC 59.793 38.462 0.00 0.00 31.97 3.14
1554 1584 0.107017 CATAGGGTTGGGAGCACTGG 60.107 60.000 0.00 0.00 0.00 4.00
1805 1858 1.838112 TCCATTTTGGCCAGCTACAG 58.162 50.000 5.11 0.00 37.47 2.74
1821 1874 3.881688 GCTACAGTGGAGAATGCATTGAT 59.118 43.478 18.59 4.91 46.83 2.57
1864 1917 0.252479 AGTGCAGGAGGAGCAAGATG 59.748 55.000 0.00 0.00 44.64 2.90
1876 1929 3.389329 GGAGCAAGATGGAGGACAATCTA 59.611 47.826 0.00 0.00 0.00 1.98
1977 2030 2.362889 CGGCCTTTTGGATGCCCT 60.363 61.111 0.00 0.00 42.29 5.19
2218 2272 4.722220 TCAAGGCCATCTTAGATGAATGG 58.278 43.478 22.42 9.34 33.68 3.16
2460 2536 3.706594 TGCTATTGGTTGGTTGGTTTTGA 59.293 39.130 0.00 0.00 0.00 2.69
2477 2553 1.951209 TGACAATGCCTAGAGACCCA 58.049 50.000 0.00 0.00 0.00 4.51
2540 2738 3.426615 ACTCACTTGGTTGGTTTTGTCA 58.573 40.909 0.00 0.00 0.00 3.58
2583 2781 2.158667 ACTTTGGTGGGTTTCTCGATGT 60.159 45.455 0.00 0.00 0.00 3.06
2658 2857 1.602377 CACTTTGGTGGGTTTCTCGAC 59.398 52.381 0.00 0.00 39.59 4.20
2664 2863 2.183555 GGGTTTCTCGACGCCGAT 59.816 61.111 0.00 0.00 44.62 4.18
2665 2864 1.314534 TGGGTTTCTCGACGCCGATA 61.315 55.000 0.00 0.00 44.62 2.92
2767 2966 5.181811 TGTGTTTGTGAGAATTGCAGGATAG 59.818 40.000 0.00 0.00 0.00 2.08
2848 3047 6.902341 TGTATGAAGACATTGAAGTCAAAGC 58.098 36.000 0.00 0.00 40.98 3.51
2923 3122 0.100682 GACTATGGAGCGCGAAGACA 59.899 55.000 12.10 2.41 0.00 3.41
3176 3377 2.158219 TCAGTTCCTTAGTGACCCAGGA 60.158 50.000 0.00 0.00 34.72 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.432326 GGTAGTATAGCACAGCTGCCTTT 60.432 47.826 15.27 8.29 45.53 3.11
3 4 1.689273 GGTAGTATAGCACAGCTGCCT 59.311 52.381 15.27 13.10 45.53 4.75
5 6 2.625790 AGAGGTAGTATAGCACAGCTGC 59.374 50.000 15.27 0.57 42.67 5.25
6 7 3.634448 ACAGAGGTAGTATAGCACAGCTG 59.366 47.826 13.48 13.48 42.67 4.24
7 8 3.886505 GACAGAGGTAGTATAGCACAGCT 59.113 47.826 0.00 0.00 42.67 4.24
8 9 3.004944 GGACAGAGGTAGTATAGCACAGC 59.995 52.174 0.00 0.00 42.67 4.40
9 10 3.251245 CGGACAGAGGTAGTATAGCACAG 59.749 52.174 0.00 0.00 42.67 3.66
10 11 3.211865 CGGACAGAGGTAGTATAGCACA 58.788 50.000 0.00 0.00 42.67 4.57
11 12 2.553172 CCGGACAGAGGTAGTATAGCAC 59.447 54.545 0.00 0.00 42.67 4.40
12 13 2.488528 CCCGGACAGAGGTAGTATAGCA 60.489 54.545 0.73 0.00 42.67 3.49
13 14 2.161030 CCCGGACAGAGGTAGTATAGC 58.839 57.143 0.73 0.00 39.93 2.97
14 15 3.505480 ACCCGGACAGAGGTAGTATAG 57.495 52.381 0.73 0.00 33.52 1.31
15 16 3.959495 AACCCGGACAGAGGTAGTATA 57.041 47.619 0.73 0.00 34.45 1.47
16 17 2.842645 AACCCGGACAGAGGTAGTAT 57.157 50.000 0.73 0.00 34.45 2.12
17 18 2.610438 AAACCCGGACAGAGGTAGTA 57.390 50.000 0.73 0.00 34.45 1.82
18 19 2.610438 TAAACCCGGACAGAGGTAGT 57.390 50.000 0.73 0.00 34.45 2.73
19 20 4.482952 AATTAAACCCGGACAGAGGTAG 57.517 45.455 0.73 0.00 34.45 3.18
20 21 5.025453 ACTAATTAAACCCGGACAGAGGTA 58.975 41.667 0.73 0.00 34.45 3.08
21 22 3.842436 ACTAATTAAACCCGGACAGAGGT 59.158 43.478 0.73 0.00 38.27 3.85
22 23 4.439968 GACTAATTAAACCCGGACAGAGG 58.560 47.826 0.73 0.00 0.00 3.69
23 24 4.439968 GGACTAATTAAACCCGGACAGAG 58.560 47.826 0.73 0.00 0.00 3.35
24 25 3.198417 GGGACTAATTAAACCCGGACAGA 59.802 47.826 0.73 0.00 32.73 3.41
25 26 3.538591 GGGACTAATTAAACCCGGACAG 58.461 50.000 0.73 0.00 32.73 3.51
26 27 2.239402 GGGGACTAATTAAACCCGGACA 59.761 50.000 0.73 0.00 42.90 4.02
27 28 2.421952 GGGGGACTAATTAAACCCGGAC 60.422 54.545 0.73 8.59 42.42 4.79
28 29 1.845791 GGGGGACTAATTAAACCCGGA 59.154 52.381 0.73 0.00 42.42 5.14
29 30 1.848388 AGGGGGACTAATTAAACCCGG 59.152 52.381 15.88 0.00 42.95 5.73
30 31 3.284617 CAAGGGGGACTAATTAAACCCG 58.715 50.000 15.88 3.93 42.95 5.28
31 32 4.326600 ACAAGGGGGACTAATTAAACCC 57.673 45.455 14.72 14.72 41.41 4.11
32 33 7.966339 AAATACAAGGGGGACTAATTAAACC 57.034 36.000 0.00 0.00 0.00 3.27
33 34 9.027202 TCAAAATACAAGGGGGACTAATTAAAC 57.973 33.333 0.00 0.00 0.00 2.01
34 35 9.603189 TTCAAAATACAAGGGGGACTAATTAAA 57.397 29.630 0.00 0.00 0.00 1.52
35 36 9.777008 ATTCAAAATACAAGGGGGACTAATTAA 57.223 29.630 0.00 0.00 0.00 1.40
36 37 9.416284 GATTCAAAATACAAGGGGGACTAATTA 57.584 33.333 0.00 0.00 0.00 1.40
37 38 7.898636 TGATTCAAAATACAAGGGGGACTAATT 59.101 33.333 0.00 0.00 0.00 1.40
38 39 7.418378 TGATTCAAAATACAAGGGGGACTAAT 58.582 34.615 0.00 0.00 0.00 1.73
39 40 6.795590 TGATTCAAAATACAAGGGGGACTAA 58.204 36.000 0.00 0.00 0.00 2.24
40 41 6.395780 TGATTCAAAATACAAGGGGGACTA 57.604 37.500 0.00 0.00 0.00 2.59
41 42 5.269554 TGATTCAAAATACAAGGGGGACT 57.730 39.130 0.00 0.00 0.00 3.85
42 43 5.993748 TTGATTCAAAATACAAGGGGGAC 57.006 39.130 0.00 0.00 0.00 4.46
43 44 7.566658 AATTTGATTCAAAATACAAGGGGGA 57.433 32.000 15.34 0.00 36.90 4.81
44 45 8.513774 CAAAATTTGATTCAAAATACAAGGGGG 58.486 33.333 15.34 0.00 36.90 5.40
45 46 9.282569 TCAAAATTTGATTCAAAATACAAGGGG 57.717 29.630 15.34 0.78 36.90 4.79
67 68 9.973450 GTTCTGCTAGTTAGATCTATGATCAAA 57.027 33.333 2.58 0.00 0.00 2.69
68 69 9.136323 TGTTCTGCTAGTTAGATCTATGATCAA 57.864 33.333 2.58 0.00 0.00 2.57
69 70 8.572185 GTGTTCTGCTAGTTAGATCTATGATCA 58.428 37.037 2.58 0.00 0.00 2.92
70 71 8.572185 TGTGTTCTGCTAGTTAGATCTATGATC 58.428 37.037 2.58 0.00 0.00 2.92
71 72 8.470657 TGTGTTCTGCTAGTTAGATCTATGAT 57.529 34.615 2.58 0.00 0.00 2.45
72 73 7.881775 TGTGTTCTGCTAGTTAGATCTATGA 57.118 36.000 2.58 0.00 0.00 2.15
73 74 8.194104 ACTTGTGTTCTGCTAGTTAGATCTATG 58.806 37.037 2.58 0.00 0.00 2.23
74 75 8.299990 ACTTGTGTTCTGCTAGTTAGATCTAT 57.700 34.615 2.58 0.00 0.00 1.98
75 76 7.704578 ACTTGTGTTCTGCTAGTTAGATCTA 57.295 36.000 0.00 0.00 0.00 1.98
76 77 6.597832 ACTTGTGTTCTGCTAGTTAGATCT 57.402 37.500 0.00 0.00 0.00 2.75
77 78 8.244802 TCTAACTTGTGTTCTGCTAGTTAGATC 58.755 37.037 18.12 0.00 45.91 2.75
78 79 8.123639 TCTAACTTGTGTTCTGCTAGTTAGAT 57.876 34.615 18.12 0.00 45.91 1.98
80 81 7.201478 GCATCTAACTTGTGTTCTGCTAGTTAG 60.201 40.741 15.31 15.31 44.73 2.34
81 82 6.590292 GCATCTAACTTGTGTTCTGCTAGTTA 59.410 38.462 0.00 0.00 37.59 2.24
82 83 5.409826 GCATCTAACTTGTGTTCTGCTAGTT 59.590 40.000 0.00 0.00 37.59 2.24
83 84 4.932200 GCATCTAACTTGTGTTCTGCTAGT 59.068 41.667 0.00 0.00 37.59 2.57
84 85 4.331168 GGCATCTAACTTGTGTTCTGCTAG 59.669 45.833 0.00 0.00 36.89 3.42
85 86 4.253685 GGCATCTAACTTGTGTTCTGCTA 58.746 43.478 0.00 0.00 36.89 3.49
86 87 3.077359 GGCATCTAACTTGTGTTCTGCT 58.923 45.455 0.00 0.00 36.89 4.24
87 88 2.813754 TGGCATCTAACTTGTGTTCTGC 59.186 45.455 0.00 0.00 37.59 4.26
88 89 3.814842 TGTGGCATCTAACTTGTGTTCTG 59.185 43.478 0.00 0.00 37.59 3.02
89 90 4.085357 TGTGGCATCTAACTTGTGTTCT 57.915 40.909 0.00 0.00 37.59 3.01
90 91 4.829064 TTGTGGCATCTAACTTGTGTTC 57.171 40.909 0.00 0.00 37.59 3.18
91 92 5.590530 TTTTGTGGCATCTAACTTGTGTT 57.409 34.783 0.00 0.00 39.98 3.32
92 93 5.590530 TTTTTGTGGCATCTAACTTGTGT 57.409 34.783 0.00 0.00 0.00 3.72
120 121 9.912634 ACTTTTGTTCAAATATGAATCGACAAT 57.087 25.926 0.00 0.00 46.67 2.71
121 122 9.743057 AACTTTTGTTCAAATATGAATCGACAA 57.257 25.926 0.00 0.00 46.67 3.18
122 123 9.743057 AAACTTTTGTTCAAATATGAATCGACA 57.257 25.926 0.00 0.00 46.67 4.35
166 167 9.705290 GTATTTTGGGTCAAATTTTGATACAGT 57.295 29.630 14.54 9.21 42.47 3.55
167 168 9.703892 TGTATTTTGGGTCAAATTTTGATACAG 57.296 29.630 14.54 0.00 42.47 2.74
170 171 9.717942 CCTTGTATTTTGGGTCAAATTTTGATA 57.282 29.630 14.54 2.99 42.47 2.15
171 172 7.665145 CCCTTGTATTTTGGGTCAAATTTTGAT 59.335 33.333 14.54 0.44 42.47 2.57
172 173 6.995091 CCCTTGTATTTTGGGTCAAATTTTGA 59.005 34.615 7.74 7.74 36.32 2.69
173 174 6.206438 CCCCTTGTATTTTGGGTCAAATTTTG 59.794 38.462 2.59 2.59 39.31 2.44
174 175 6.101881 TCCCCTTGTATTTTGGGTCAAATTTT 59.898 34.615 0.00 0.00 39.31 1.82
175 176 5.608860 TCCCCTTGTATTTTGGGTCAAATTT 59.391 36.000 0.00 0.00 39.31 1.82
176 177 5.012664 GTCCCCTTGTATTTTGGGTCAAATT 59.987 40.000 0.00 0.00 39.31 1.82
177 178 4.530553 GTCCCCTTGTATTTTGGGTCAAAT 59.469 41.667 0.00 0.00 39.31 2.32
178 179 3.898741 GTCCCCTTGTATTTTGGGTCAAA 59.101 43.478 0.00 0.00 39.31 2.69
179 180 3.141272 AGTCCCCTTGTATTTTGGGTCAA 59.859 43.478 0.00 0.00 39.31 3.18
180 181 2.719705 AGTCCCCTTGTATTTTGGGTCA 59.280 45.455 0.00 0.00 39.31 4.02
181 182 3.451402 AGTCCCCTTGTATTTTGGGTC 57.549 47.619 0.00 0.00 39.31 4.46
182 183 3.915346 AAGTCCCCTTGTATTTTGGGT 57.085 42.857 0.00 0.00 39.31 4.51
183 184 7.964666 TTATTAAGTCCCCTTGTATTTTGGG 57.035 36.000 0.00 0.00 40.59 4.12
186 187 8.909923 CGGATTTATTAAGTCCCCTTGTATTTT 58.090 33.333 11.23 0.00 31.89 1.82
187 188 7.504574 CCGGATTTATTAAGTCCCCTTGTATTT 59.495 37.037 11.23 0.00 31.89 1.40
188 189 7.002276 CCGGATTTATTAAGTCCCCTTGTATT 58.998 38.462 11.23 0.00 31.89 1.89
189 190 6.330778 TCCGGATTTATTAAGTCCCCTTGTAT 59.669 38.462 0.00 0.00 31.89 2.29
190 191 5.666718 TCCGGATTTATTAAGTCCCCTTGTA 59.333 40.000 0.00 0.00 31.89 2.41
191 192 4.475747 TCCGGATTTATTAAGTCCCCTTGT 59.524 41.667 0.00 0.00 31.89 3.16
192 193 4.820173 GTCCGGATTTATTAAGTCCCCTTG 59.180 45.833 7.81 0.00 31.89 3.61
193 194 4.443881 CGTCCGGATTTATTAAGTCCCCTT 60.444 45.833 7.81 0.00 34.56 3.95
194 195 3.070590 CGTCCGGATTTATTAAGTCCCCT 59.929 47.826 7.81 0.00 0.00 4.79
195 196 3.396560 CGTCCGGATTTATTAAGTCCCC 58.603 50.000 7.81 0.00 0.00 4.81
196 197 3.070015 TCCGTCCGGATTTATTAAGTCCC 59.930 47.826 7.81 0.00 39.76 4.46
197 198 4.304939 CTCCGTCCGGATTTATTAAGTCC 58.695 47.826 7.81 7.69 44.24 3.85
198 199 4.038402 TCCTCCGTCCGGATTTATTAAGTC 59.962 45.833 7.81 0.00 44.24 3.01
199 200 3.962718 TCCTCCGTCCGGATTTATTAAGT 59.037 43.478 7.81 0.00 44.24 2.24
200 201 4.595762 TCCTCCGTCCGGATTTATTAAG 57.404 45.455 7.81 0.00 44.24 1.85
201 202 4.406649 ACTTCCTCCGTCCGGATTTATTAA 59.593 41.667 7.81 0.00 44.24 1.40
202 203 3.962718 ACTTCCTCCGTCCGGATTTATTA 59.037 43.478 7.81 0.00 44.24 0.98
203 204 2.770232 ACTTCCTCCGTCCGGATTTATT 59.230 45.455 7.81 0.00 44.24 1.40
204 205 2.395619 ACTTCCTCCGTCCGGATTTAT 58.604 47.619 7.81 0.00 44.24 1.40
205 206 1.856629 ACTTCCTCCGTCCGGATTTA 58.143 50.000 7.81 0.00 44.24 1.40
206 207 1.755380 CTACTTCCTCCGTCCGGATTT 59.245 52.381 7.81 0.00 44.24 2.17
207 208 1.341778 ACTACTTCCTCCGTCCGGATT 60.342 52.381 7.81 0.00 44.24 3.01
208 209 0.258194 ACTACTTCCTCCGTCCGGAT 59.742 55.000 7.81 0.00 44.24 4.18
209 210 0.038744 AACTACTTCCTCCGTCCGGA 59.961 55.000 0.00 0.00 42.90 5.14
210 211 0.172803 CAACTACTTCCTCCGTCCGG 59.827 60.000 0.00 0.00 0.00 5.14
211 212 0.886563 ACAACTACTTCCTCCGTCCG 59.113 55.000 0.00 0.00 0.00 4.79
212 213 3.064931 CAAACAACTACTTCCTCCGTCC 58.935 50.000 0.00 0.00 0.00 4.79
213 214 3.725490 ACAAACAACTACTTCCTCCGTC 58.275 45.455 0.00 0.00 0.00 4.79
214 215 3.832615 ACAAACAACTACTTCCTCCGT 57.167 42.857 0.00 0.00 0.00 4.69
215 216 5.295152 AGTAACAAACAACTACTTCCTCCG 58.705 41.667 0.00 0.00 0.00 4.63
216 217 5.699915 GGAGTAACAAACAACTACTTCCTCC 59.300 44.000 0.00 0.00 0.00 4.30
217 218 5.699915 GGGAGTAACAAACAACTACTTCCTC 59.300 44.000 0.00 0.00 38.04 3.71
218 219 5.368816 AGGGAGTAACAAACAACTACTTCCT 59.631 40.000 2.93 2.93 43.93 3.36
219 220 5.618236 AGGGAGTAACAAACAACTACTTCC 58.382 41.667 0.00 0.00 40.42 3.46
220 221 6.424207 CAGAGGGAGTAACAAACAACTACTTC 59.576 42.308 0.00 0.00 33.87 3.01
221 222 6.126854 ACAGAGGGAGTAACAAACAACTACTT 60.127 38.462 0.00 0.00 0.00 2.24
222 223 5.365895 ACAGAGGGAGTAACAAACAACTACT 59.634 40.000 0.00 0.00 0.00 2.57
223 224 5.608449 ACAGAGGGAGTAACAAACAACTAC 58.392 41.667 0.00 0.00 0.00 2.73
224 225 5.881923 ACAGAGGGAGTAACAAACAACTA 57.118 39.130 0.00 0.00 0.00 2.24
225 226 4.772886 ACAGAGGGAGTAACAAACAACT 57.227 40.909 0.00 0.00 0.00 3.16
226 227 5.589050 AGAAACAGAGGGAGTAACAAACAAC 59.411 40.000 0.00 0.00 0.00 3.32
227 228 5.751586 AGAAACAGAGGGAGTAACAAACAA 58.248 37.500 0.00 0.00 0.00 2.83
228 229 5.367945 AGAAACAGAGGGAGTAACAAACA 57.632 39.130 0.00 0.00 0.00 2.83
229 230 6.694877 AAAGAAACAGAGGGAGTAACAAAC 57.305 37.500 0.00 0.00 0.00 2.93
230 231 7.712204 AAAAAGAAACAGAGGGAGTAACAAA 57.288 32.000 0.00 0.00 0.00 2.83
231 232 8.050930 ACTAAAAAGAAACAGAGGGAGTAACAA 58.949 33.333 0.00 0.00 0.00 2.83
232 233 7.571025 ACTAAAAAGAAACAGAGGGAGTAACA 58.429 34.615 0.00 0.00 0.00 2.41
233 234 7.932491 AGACTAAAAAGAAACAGAGGGAGTAAC 59.068 37.037 0.00 0.00 0.00 2.50
234 235 7.931948 CAGACTAAAAAGAAACAGAGGGAGTAA 59.068 37.037 0.00 0.00 0.00 2.24
235 236 7.442656 CAGACTAAAAAGAAACAGAGGGAGTA 58.557 38.462 0.00 0.00 0.00 2.59
236 237 6.292150 CAGACTAAAAAGAAACAGAGGGAGT 58.708 40.000 0.00 0.00 0.00 3.85
237 238 5.180304 GCAGACTAAAAAGAAACAGAGGGAG 59.820 44.000 0.00 0.00 0.00 4.30
238 239 5.063880 GCAGACTAAAAAGAAACAGAGGGA 58.936 41.667 0.00 0.00 0.00 4.20
239 240 4.821805 TGCAGACTAAAAAGAAACAGAGGG 59.178 41.667 0.00 0.00 0.00 4.30
240 241 6.566197 ATGCAGACTAAAAAGAAACAGAGG 57.434 37.500 0.00 0.00 0.00 3.69
251 252 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
252 253 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
253 254 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
254 255 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
255 256 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
256 257 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
257 258 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
258 259 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
259 260 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
260 261 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
266 267 9.750125 GATAAAGTTTGACTTTGACCAAATCTT 57.250 29.630 14.50 0.70 46.83 2.40
267 268 8.912988 TGATAAAGTTTGACTTTGACCAAATCT 58.087 29.630 14.50 0.00 46.83 2.40
268 269 9.528018 TTGATAAAGTTTGACTTTGACCAAATC 57.472 29.630 14.50 9.44 46.83 2.17
269 270 9.313118 GTTGATAAAGTTTGACTTTGACCAAAT 57.687 29.630 14.50 1.30 46.83 2.32
270 271 8.527810 AGTTGATAAAGTTTGACTTTGACCAAA 58.472 29.630 14.50 0.00 46.83 3.28
271 272 8.062065 AGTTGATAAAGTTTGACTTTGACCAA 57.938 30.769 14.50 12.01 46.83 3.67
272 273 7.639113 AGTTGATAAAGTTTGACTTTGACCA 57.361 32.000 14.50 7.82 46.83 4.02
273 274 8.926715 AAAGTTGATAAAGTTTGACTTTGACC 57.073 30.769 14.50 5.82 46.83 4.02
434 435 7.846644 TGATCAAAATCAAACTTTGCAAAGT 57.153 28.000 33.85 33.85 42.57 2.66
461 462 9.834628 CCGTTTCTTTTTAGTTTGCATATAAGA 57.165 29.630 0.00 0.00 0.00 2.10
462 463 9.834628 TCCGTTTCTTTTTAGTTTGCATATAAG 57.165 29.630 0.00 0.00 0.00 1.73
463 464 9.834628 CTCCGTTTCTTTTTAGTTTGCATATAA 57.165 29.630 0.00 0.00 0.00 0.98
464 465 8.455682 CCTCCGTTTCTTTTTAGTTTGCATATA 58.544 33.333 0.00 0.00 0.00 0.86
465 466 7.312899 CCTCCGTTTCTTTTTAGTTTGCATAT 58.687 34.615 0.00 0.00 0.00 1.78
466 467 6.294286 CCCTCCGTTTCTTTTTAGTTTGCATA 60.294 38.462 0.00 0.00 0.00 3.14
467 468 5.508994 CCCTCCGTTTCTTTTTAGTTTGCAT 60.509 40.000 0.00 0.00 0.00 3.96
468 469 4.202070 CCCTCCGTTTCTTTTTAGTTTGCA 60.202 41.667 0.00 0.00 0.00 4.08
469 470 4.037089 TCCCTCCGTTTCTTTTTAGTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
470 471 5.298527 ACTCCCTCCGTTTCTTTTTAGTTTG 59.701 40.000 0.00 0.00 0.00 2.93
471 472 5.443283 ACTCCCTCCGTTTCTTTTTAGTTT 58.557 37.500 0.00 0.00 0.00 2.66
472 473 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
473 474 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
474 475 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
475 476 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
476 477 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
477 478 4.426736 TTGTACTCCCTCCGTTTCTTTT 57.573 40.909 0.00 0.00 0.00 2.27
478 479 4.635699 ATTGTACTCCCTCCGTTTCTTT 57.364 40.909 0.00 0.00 0.00 2.52
479 480 4.286291 AGAATTGTACTCCCTCCGTTTCTT 59.714 41.667 0.00 0.00 0.00 2.52
480 481 3.838903 AGAATTGTACTCCCTCCGTTTCT 59.161 43.478 0.00 0.00 0.00 2.52
481 482 4.081586 AGAGAATTGTACTCCCTCCGTTTC 60.082 45.833 0.00 0.00 35.27 2.78
482 483 3.838903 AGAGAATTGTACTCCCTCCGTTT 59.161 43.478 0.00 0.00 35.27 3.60
483 484 3.442076 AGAGAATTGTACTCCCTCCGTT 58.558 45.455 0.00 0.00 35.27 4.44
484 485 3.103080 AGAGAATTGTACTCCCTCCGT 57.897 47.619 0.00 0.00 35.27 4.69
485 486 3.004944 GCTAGAGAATTGTACTCCCTCCG 59.995 52.174 0.00 0.00 35.27 4.63
486 487 3.961408 TGCTAGAGAATTGTACTCCCTCC 59.039 47.826 0.00 0.00 35.27 4.30
487 488 5.353111 GTTGCTAGAGAATTGTACTCCCTC 58.647 45.833 0.00 0.00 35.27 4.30
488 489 4.142138 CGTTGCTAGAGAATTGTACTCCCT 60.142 45.833 0.00 0.00 35.27 4.20
489 490 4.113354 CGTTGCTAGAGAATTGTACTCCC 58.887 47.826 0.00 0.00 35.27 4.30
490 491 4.995124 TCGTTGCTAGAGAATTGTACTCC 58.005 43.478 0.00 0.00 35.27 3.85
491 492 6.266323 TGATCGTTGCTAGAGAATTGTACTC 58.734 40.000 0.00 0.00 34.95 2.59
492 493 6.208988 TGATCGTTGCTAGAGAATTGTACT 57.791 37.500 0.00 0.00 0.00 2.73
493 494 6.887376 TTGATCGTTGCTAGAGAATTGTAC 57.113 37.500 0.00 0.00 0.00 2.90
494 495 7.382488 GCTATTGATCGTTGCTAGAGAATTGTA 59.618 37.037 0.00 0.00 0.00 2.41
495 496 6.201806 GCTATTGATCGTTGCTAGAGAATTGT 59.798 38.462 0.00 0.00 0.00 2.71
496 497 6.347240 GGCTATTGATCGTTGCTAGAGAATTG 60.347 42.308 0.00 0.00 0.00 2.32
497 498 5.698545 GGCTATTGATCGTTGCTAGAGAATT 59.301 40.000 0.00 0.00 0.00 2.17
498 499 5.011533 AGGCTATTGATCGTTGCTAGAGAAT 59.988 40.000 0.00 0.00 0.00 2.40
499 500 4.342378 AGGCTATTGATCGTTGCTAGAGAA 59.658 41.667 0.00 0.00 0.00 2.87
500 501 3.891977 AGGCTATTGATCGTTGCTAGAGA 59.108 43.478 0.00 0.00 0.00 3.10
501 502 3.986572 CAGGCTATTGATCGTTGCTAGAG 59.013 47.826 0.00 0.00 0.00 2.43
502 503 3.384789 ACAGGCTATTGATCGTTGCTAGA 59.615 43.478 0.00 0.00 0.00 2.43
503 504 3.722147 ACAGGCTATTGATCGTTGCTAG 58.278 45.455 0.00 0.00 0.00 3.42
504 505 3.819564 ACAGGCTATTGATCGTTGCTA 57.180 42.857 0.00 0.00 0.00 3.49
505 506 2.698855 ACAGGCTATTGATCGTTGCT 57.301 45.000 0.00 0.00 0.00 3.91
506 507 4.058124 TCATACAGGCTATTGATCGTTGC 58.942 43.478 0.00 0.00 0.00 4.17
507 508 4.148871 CGTCATACAGGCTATTGATCGTTG 59.851 45.833 0.00 0.00 0.00 4.10
508 509 4.202121 ACGTCATACAGGCTATTGATCGTT 60.202 41.667 0.00 0.00 0.00 3.85
509 510 3.318275 ACGTCATACAGGCTATTGATCGT 59.682 43.478 0.00 1.70 0.00 3.73
510 511 3.902150 ACGTCATACAGGCTATTGATCG 58.098 45.455 0.00 1.12 0.00 3.69
511 512 4.681942 GTGACGTCATACAGGCTATTGATC 59.318 45.833 23.12 0.00 0.00 2.92
512 513 4.099419 TGTGACGTCATACAGGCTATTGAT 59.901 41.667 23.12 0.00 0.00 2.57
513 514 3.445805 TGTGACGTCATACAGGCTATTGA 59.554 43.478 23.12 0.00 0.00 2.57
514 515 3.780902 TGTGACGTCATACAGGCTATTG 58.219 45.455 23.12 0.00 0.00 1.90
515 516 4.672587 ATGTGACGTCATACAGGCTATT 57.327 40.909 23.12 0.00 0.00 1.73
516 517 4.672587 AATGTGACGTCATACAGGCTAT 57.327 40.909 23.12 0.00 0.00 2.97
517 518 5.784578 ATAATGTGACGTCATACAGGCTA 57.215 39.130 23.12 9.18 0.00 3.93
518 519 4.672587 ATAATGTGACGTCATACAGGCT 57.327 40.909 23.12 0.00 0.00 4.58
519 520 4.570772 ACAATAATGTGACGTCATACAGGC 59.429 41.667 23.12 8.13 38.69 4.85
520 521 6.042777 AGACAATAATGTGACGTCATACAGG 58.957 40.000 23.12 10.76 40.74 4.00
521 522 7.525688 AAGACAATAATGTGACGTCATACAG 57.474 36.000 23.12 10.59 40.74 2.74
522 523 7.899178 AAAGACAATAATGTGACGTCATACA 57.101 32.000 23.12 16.34 40.74 2.29
523 524 7.903431 GGAAAAGACAATAATGTGACGTCATAC 59.097 37.037 23.12 10.51 40.74 2.39
524 525 7.822334 AGGAAAAGACAATAATGTGACGTCATA 59.178 33.333 23.12 20.30 40.74 2.15
525 526 6.655003 AGGAAAAGACAATAATGTGACGTCAT 59.345 34.615 23.12 8.58 40.74 3.06
526 527 5.995282 AGGAAAAGACAATAATGTGACGTCA 59.005 36.000 15.76 15.76 40.74 4.35
527 528 6.481954 AGGAAAAGACAATAATGTGACGTC 57.518 37.500 9.11 9.11 40.74 4.34
528 529 7.972832 TTAGGAAAAGACAATAATGTGACGT 57.027 32.000 0.00 0.00 40.74 4.34
529 530 8.717821 TCTTTAGGAAAAGACAATAATGTGACG 58.282 33.333 0.00 0.00 44.85 4.35
543 544 8.383318 TCATCTCTTGTGTTCTTTAGGAAAAG 57.617 34.615 0.00 0.00 42.99 2.27
544 545 8.746052 TTCATCTCTTGTGTTCTTTAGGAAAA 57.254 30.769 0.00 0.00 35.51 2.29
545 546 8.924511 ATTCATCTCTTGTGTTCTTTAGGAAA 57.075 30.769 0.00 0.00 35.51 3.13
550 551 9.547753 GCCTATATTCATCTCTTGTGTTCTTTA 57.452 33.333 0.00 0.00 0.00 1.85
551 552 8.049117 TGCCTATATTCATCTCTTGTGTTCTTT 58.951 33.333 0.00 0.00 0.00 2.52
552 553 7.568349 TGCCTATATTCATCTCTTGTGTTCTT 58.432 34.615 0.00 0.00 0.00 2.52
553 554 7.129457 TGCCTATATTCATCTCTTGTGTTCT 57.871 36.000 0.00 0.00 0.00 3.01
554 555 7.976135 ATGCCTATATTCATCTCTTGTGTTC 57.024 36.000 0.00 0.00 0.00 3.18
555 556 9.499479 CTTATGCCTATATTCATCTCTTGTGTT 57.501 33.333 0.00 0.00 0.00 3.32
556 557 8.654997 ACTTATGCCTATATTCATCTCTTGTGT 58.345 33.333 0.00 0.00 0.00 3.72
557 558 9.499479 AACTTATGCCTATATTCATCTCTTGTG 57.501 33.333 0.00 0.00 0.00 3.33
594 595 9.023962 TCTCCACATGTAAGCAAGAAAATAAAT 57.976 29.630 0.00 0.00 0.00 1.40
595 596 8.402798 TCTCCACATGTAAGCAAGAAAATAAA 57.597 30.769 0.00 0.00 0.00 1.40
596 597 7.665559 ACTCTCCACATGTAAGCAAGAAAATAA 59.334 33.333 0.00 0.00 0.00 1.40
597 598 7.119699 CACTCTCCACATGTAAGCAAGAAAATA 59.880 37.037 0.00 0.00 0.00 1.40
598 599 6.006449 ACTCTCCACATGTAAGCAAGAAAAT 58.994 36.000 0.00 0.00 0.00 1.82
599 600 5.239306 CACTCTCCACATGTAAGCAAGAAAA 59.761 40.000 0.00 0.00 0.00 2.29
600 601 4.756642 CACTCTCCACATGTAAGCAAGAAA 59.243 41.667 0.00 0.00 0.00 2.52
601 602 4.040339 TCACTCTCCACATGTAAGCAAGAA 59.960 41.667 0.00 0.00 0.00 2.52
602 603 3.578282 TCACTCTCCACATGTAAGCAAGA 59.422 43.478 0.00 0.00 0.00 3.02
603 604 3.930336 TCACTCTCCACATGTAAGCAAG 58.070 45.455 0.00 0.00 0.00 4.01
604 605 4.350368 TTCACTCTCCACATGTAAGCAA 57.650 40.909 0.00 0.00 0.00 3.91
605 606 4.558226 ATTCACTCTCCACATGTAAGCA 57.442 40.909 0.00 0.00 0.00 3.91
606 607 4.437930 GCAATTCACTCTCCACATGTAAGC 60.438 45.833 0.00 0.00 0.00 3.09
607 608 4.696877 TGCAATTCACTCTCCACATGTAAG 59.303 41.667 0.00 0.00 0.00 2.34
608 609 4.650734 TGCAATTCACTCTCCACATGTAA 58.349 39.130 0.00 0.00 0.00 2.41
609 610 4.284829 TGCAATTCACTCTCCACATGTA 57.715 40.909 0.00 0.00 0.00 2.29
610 611 3.144657 TGCAATTCACTCTCCACATGT 57.855 42.857 0.00 0.00 0.00 3.21
611 612 4.508461 TTTGCAATTCACTCTCCACATG 57.492 40.909 0.00 0.00 0.00 3.21
612 613 5.534207 TTTTTGCAATTCACTCTCCACAT 57.466 34.783 0.00 0.00 0.00 3.21
613 614 4.998671 TTTTTGCAATTCACTCTCCACA 57.001 36.364 0.00 0.00 0.00 4.17
799 808 1.716760 GGCGTTGTCGTGTGAACAA 59.283 52.632 0.00 0.00 39.49 2.83
994 1020 1.077663 AGACCAGGAAACCATGGCAAT 59.922 47.619 13.04 0.00 40.45 3.56
996 1022 0.251297 CAGACCAGGAAACCATGGCA 60.251 55.000 13.04 0.00 40.45 4.92
1184 1211 1.405463 CGGAGTCATCGATGGTCTCAA 59.595 52.381 31.60 13.46 33.94 3.02
1230 1257 1.956477 AGGGAGTGTTCATTGCACAAC 59.044 47.619 0.00 0.00 39.17 3.32
1253 1280 1.079819 GCAACACGCCTCTCTGCTA 60.080 57.895 0.00 0.00 32.94 3.49
1344 1371 9.959721 ATAAAATCAGTACTAAACAGTGACCAT 57.040 29.630 0.00 0.00 0.00 3.55
1533 1563 1.819632 GTGCTCCCAACCCTATGCG 60.820 63.158 0.00 0.00 0.00 4.73
1554 1584 9.372369 ACATGCTATAAAGTAAGAAGTCTCAAC 57.628 33.333 0.00 0.00 0.00 3.18
1805 1858 4.978083 ACTTGATCAATGCATTCTCCAC 57.022 40.909 9.53 0.71 0.00 4.02
1821 1874 7.038302 ACTCTTCATACTTATCCCACAACTTGA 60.038 37.037 0.00 0.00 0.00 3.02
1864 1917 4.744795 TGAGCTTTCTAGATTGTCCTCC 57.255 45.455 0.00 0.00 0.00 4.30
1876 1929 5.581126 TGTGAACAACAAATGAGCTTTCT 57.419 34.783 0.00 0.00 35.24 2.52
1987 2040 2.373335 TACCTCTCTCCATCTGAGCC 57.627 55.000 0.00 0.00 41.18 4.70
2218 2272 6.992063 AGCAGCATATTACATTATACTGCC 57.008 37.500 11.27 0.00 44.67 4.85
2442 2518 4.559862 TTGTCAAAACCAACCAACCAAT 57.440 36.364 0.00 0.00 0.00 3.16
2460 2536 2.237392 GTCTTGGGTCTCTAGGCATTGT 59.763 50.000 0.00 0.00 0.00 2.71
2540 2738 3.054287 TGAGTCTAGGGTCTCTCGTCATT 60.054 47.826 10.22 0.00 0.00 2.57
2583 2781 2.110901 GTGAGTCTAGGGTCACTCGA 57.889 55.000 14.70 0.00 41.81 4.04
2658 2857 1.888215 TACACTAGGGTCTATCGGCG 58.112 55.000 0.00 0.00 0.00 6.46
2664 2863 4.868268 AGATGCACTTACACTAGGGTCTA 58.132 43.478 0.00 0.00 0.00 2.59
2665 2864 3.714144 AGATGCACTTACACTAGGGTCT 58.286 45.455 0.00 0.00 0.00 3.85
2767 2966 4.345257 TCAATGAGGGACTTCTACCTATGC 59.655 45.833 0.00 0.00 41.55 3.14
2923 3122 7.242914 AGAAAAAGAACGACGAAACAACTAT 57.757 32.000 0.00 0.00 0.00 2.12
3176 3377 4.588899 TGACCTGATTTGTCCGAAATGAT 58.411 39.130 0.00 0.00 31.60 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.