Multiple sequence alignment - TraesCS7A01G444300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G444300 chr7A 100.000 6291 0 0 1 6291 638705646 638711936 0.000000e+00 11618.0
1 TraesCS7A01G444300 chr7A 92.105 114 8 1 2087 2199 401657868 401657755 6.530000e-35 159.0
2 TraesCS7A01G444300 chr7D 93.899 3196 113 24 2376 5521 552963309 552966472 0.000000e+00 4747.0
3 TraesCS7A01G444300 chr7D 91.969 1432 65 35 981 2380 552961847 552963260 0.000000e+00 1962.0
4 TraesCS7A01G444300 chr7D 85.642 982 89 21 5351 6291 552987626 552988596 0.000000e+00 985.0
5 TraesCS7A01G444300 chr7D 85.363 977 89 26 3 962 552960919 552961858 0.000000e+00 963.0
6 TraesCS7A01G444300 chr7D 94.000 400 20 2 5684 6082 552966621 552967017 2.510000e-168 603.0
7 TraesCS7A01G444300 chr7D 93.237 414 17 4 5508 5914 553064212 553064621 3.250000e-167 599.0
8 TraesCS7A01G444300 chr7D 97.119 243 7 0 6049 6291 552967017 552967259 1.630000e-110 411.0
9 TraesCS7A01G444300 chr7D 94.815 135 7 0 5087 5221 552987099 552987233 1.780000e-50 211.0
10 TraesCS7A01G444300 chr7D 93.056 144 9 1 5078 5221 553071318 553071460 6.390000e-50 209.0
11 TraesCS7A01G444300 chr7D 94.215 121 5 1 5565 5683 552966473 552966593 3.870000e-42 183.0
12 TraesCS7A01G444300 chr7D 94.937 79 4 0 5400 5478 553062751 553062829 2.380000e-24 124.0
13 TraesCS7A01G444300 chr7B 89.073 3203 249 69 2379 5543 598475929 598479068 0.000000e+00 3882.0
14 TraesCS7A01G444300 chr7B 96.030 1486 53 5 4061 5543 644553999 644555481 0.000000e+00 2412.0
15 TraesCS7A01G444300 chr7B 95.939 1182 45 1 4026 5207 599415147 599416325 0.000000e+00 1914.0
16 TraesCS7A01G444300 chr7B 92.347 1359 63 12 2651 3982 599413509 599414853 0.000000e+00 1895.0
17 TraesCS7A01G444300 chr7B 84.114 1580 145 51 2379 3925 644550537 644552043 0.000000e+00 1430.0
18 TraesCS7A01G444300 chr7B 87.122 1157 80 33 5199 6291 599416617 599417768 0.000000e+00 1247.0
19 TraesCS7A01G444300 chr7B 88.304 1026 67 17 981 1967 644545390 644546401 0.000000e+00 1181.0
20 TraesCS7A01G444300 chr7B 85.957 1061 87 28 5288 6291 599392802 599393857 0.000000e+00 1077.0
21 TraesCS7A01G444300 chr7B 89.062 896 50 19 976 1841 598474262 598475139 0.000000e+00 1068.0
22 TraesCS7A01G444300 chr7B 83.011 983 111 20 5360 6291 599359301 599360278 0.000000e+00 839.0
23 TraesCS7A01G444300 chr7B 96.480 483 16 1 2165 2647 599412929 599413410 0.000000e+00 797.0
24 TraesCS7A01G444300 chr7B 86.727 550 32 18 5546 6067 598479213 598479749 1.970000e-159 573.0
25 TraesCS7A01G444300 chr7B 89.610 385 27 3 5684 6067 644555822 644556194 1.590000e-130 477.0
26 TraesCS7A01G444300 chr7B 88.770 374 31 10 335 699 644544769 644545140 1.240000e-121 448.0
27 TraesCS7A01G444300 chr7B 90.029 341 28 4 3 337 644543882 644544222 2.690000e-118 436.0
28 TraesCS7A01G444300 chr7B 89.826 344 28 4 1 337 598472749 598473092 9.690000e-118 435.0
29 TraesCS7A01G444300 chr7B 94.262 244 14 0 6048 6291 598479769 598480012 2.140000e-99 374.0
30 TraesCS7A01G444300 chr7B 86.328 256 31 4 2126 2380 598475606 598475858 6.210000e-70 276.0
31 TraesCS7A01G444300 chr7B 90.698 172 14 2 791 962 644545232 644545401 1.760000e-55 228.0
32 TraesCS7A01G444300 chr7B 95.652 138 5 1 5546 5683 644555626 644555762 2.950000e-53 220.0
33 TraesCS7A01G444300 chr7B 82.500 200 28 4 1840 2037 598475354 598475548 1.080000e-37 169.0
34 TraesCS7A01G444300 chr1D 81.212 990 123 28 1051 2016 366164928 366163978 0.000000e+00 739.0
35 TraesCS7A01G444300 chr3A 80.177 1019 125 36 1030 2016 733285049 733284076 0.000000e+00 691.0
36 TraesCS7A01G444300 chr3A 81.714 875 100 31 1006 1856 79458359 79457521 0.000000e+00 675.0
37 TraesCS7A01G444300 chr3A 92.105 114 8 1 2087 2199 247166721 247166608 6.530000e-35 159.0
38 TraesCS7A01G444300 chr4B 87.413 429 46 3 1199 1626 98452616 98452195 2.640000e-133 486.0
39 TraesCS7A01G444300 chr4B 95.000 40 2 0 1561 1600 98452199 98452160 5.270000e-06 63.9
40 TraesCS7A01G444300 chr6B 76.286 700 125 32 4078 4748 164381675 164382362 1.010000e-87 335.0
41 TraesCS7A01G444300 chr6B 91.919 99 8 0 2490 2588 164378656 164378754 8.500000e-29 139.0
42 TraesCS7A01G444300 chr5A 83.569 353 53 4 1190 1542 78912262 78912609 6.080000e-85 326.0
43 TraesCS7A01G444300 chr6D 78.718 390 64 13 4081 4456 86733161 86733545 6.300000e-60 243.0
44 TraesCS7A01G444300 chr6D 91.919 99 8 0 2490 2588 86730937 86731035 8.500000e-29 139.0
45 TraesCS7A01G444300 chr6D 87.619 105 13 0 2490 2594 86643114 86643010 8.560000e-24 122.0
46 TraesCS7A01G444300 chr6D 92.105 76 6 0 2273 2348 86730447 86730522 2.400000e-19 108.0
47 TraesCS7A01G444300 chr6A 77.919 394 66 17 4078 4456 104513646 104514033 6.350000e-55 226.0
48 TraesCS7A01G444300 chr6A 73.538 684 126 42 4093 4748 104305144 104304488 6.390000e-50 209.0
49 TraesCS7A01G444300 chr6A 83.500 200 33 0 4549 4748 104514142 104514341 2.990000e-43 187.0
50 TraesCS7A01G444300 chr6A 92.308 117 7 2 2084 2199 443934699 443934814 1.400000e-36 165.0
51 TraesCS7A01G444300 chr6A 91.919 99 8 0 2490 2588 104511434 104511532 8.500000e-29 139.0
52 TraesCS7A01G444300 chr6A 88.571 105 12 0 2490 2594 104308367 104308263 1.840000e-25 128.0
53 TraesCS7A01G444300 chr6A 88.764 89 10 0 2260 2348 104510933 104511021 6.670000e-20 110.0
54 TraesCS7A01G444300 chr6A 93.151 73 5 0 2276 2348 104308921 104308849 2.400000e-19 108.0
55 TraesCS7A01G444300 chr1A 84.360 211 30 1 5684 5894 85318368 85318161 2.970000e-48 204.0
56 TraesCS7A01G444300 chr5B 92.308 117 7 2 2084 2199 507342014 507342129 1.400000e-36 165.0
57 TraesCS7A01G444300 chr4D 92.105 114 7 2 2087 2199 266759659 266759547 6.530000e-35 159.0
58 TraesCS7A01G444300 chr3B 92.105 114 7 2 2087 2199 247080451 247080339 6.530000e-35 159.0
59 TraesCS7A01G444300 chr2D 92.105 114 7 2 2087 2199 205892564 205892452 6.530000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G444300 chr7A 638705646 638711936 6290 False 11618.000000 11618 100.000000 1 6291 1 chr7A.!!$F1 6290
1 TraesCS7A01G444300 chr7D 552960919 552967259 6340 False 1478.166667 4747 92.760833 3 6291 6 chr7D.!!$F2 6288
2 TraesCS7A01G444300 chr7D 552987099 552988596 1497 False 598.000000 985 90.228500 5087 6291 2 chr7D.!!$F3 1204
3 TraesCS7A01G444300 chr7D 553062751 553064621 1870 False 361.500000 599 94.087000 5400 5914 2 chr7D.!!$F4 514
4 TraesCS7A01G444300 chr7B 599412929 599417768 4839 False 1463.250000 1914 92.972000 2165 6291 4 chr7B.!!$F4 4126
5 TraesCS7A01G444300 chr7B 644550537 644556194 5657 False 1134.750000 2412 91.351500 2379 6067 4 chr7B.!!$F6 3688
6 TraesCS7A01G444300 chr7B 599392802 599393857 1055 False 1077.000000 1077 85.957000 5288 6291 1 chr7B.!!$F2 1003
7 TraesCS7A01G444300 chr7B 598472749 598480012 7263 False 968.142857 3882 88.254000 1 6291 7 chr7B.!!$F3 6290
8 TraesCS7A01G444300 chr7B 599359301 599360278 977 False 839.000000 839 83.011000 5360 6291 1 chr7B.!!$F1 931
9 TraesCS7A01G444300 chr7B 644543882 644546401 2519 False 573.250000 1181 89.450250 3 1967 4 chr7B.!!$F5 1964
10 TraesCS7A01G444300 chr1D 366163978 366164928 950 True 739.000000 739 81.212000 1051 2016 1 chr1D.!!$R1 965
11 TraesCS7A01G444300 chr3A 733284076 733285049 973 True 691.000000 691 80.177000 1030 2016 1 chr3A.!!$R3 986
12 TraesCS7A01G444300 chr3A 79457521 79458359 838 True 675.000000 675 81.714000 1006 1856 1 chr3A.!!$R1 850
13 TraesCS7A01G444300 chr6B 164378656 164382362 3706 False 237.000000 335 84.102500 2490 4748 2 chr6B.!!$F1 2258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 1161 0.313987 GCTTTGCCGCCAAACTTAGT 59.686 50.000 0.00 0.00 36.09 2.24 F
881 1531 0.320374 AAATGAGAACCTGGTCGCGA 59.680 50.000 3.71 3.71 0.00 5.87 F
952 1627 0.328258 ATCCCAACAGTGCCCACTAC 59.672 55.000 0.00 0.00 40.20 2.73 F
1890 2874 1.042559 CCAAGCCCAAGTTGTGTGGT 61.043 55.000 1.45 0.00 34.01 4.16 F
3423 5268 1.026584 GGTTGGCACTGGTACGTTTT 58.973 50.000 0.00 0.00 0.00 2.43 F
4001 7235 1.006519 TGCTCTCTGCTACTCTCCCTT 59.993 52.381 0.00 0.00 43.37 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 3080 0.850100 TCCCCAAGAGGAAGCAACAA 59.150 50.000 0.00 0.00 38.24 2.83 R
2203 3211 1.072489 TCAGGACGCAACCATGGTTTA 59.928 47.619 27.82 3.33 36.00 2.01 R
2597 3679 2.010497 GAGTCAATTCGGAAAGGAGGC 58.990 52.381 0.00 0.00 0.00 4.70 R
3426 5271 0.029834 CGCCAGCAAACTATCATGCC 59.970 55.000 0.00 0.00 43.57 4.40 R
5257 10485 1.075601 TGCAATGGGAGAGAGGGTTT 58.924 50.000 0.00 0.00 0.00 3.27 R
5919 13188 1.275657 CCGCGCGACCATGATAAAC 59.724 57.895 34.63 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 5.536161 AGGACAATATGGTCATGTAAATGGC 59.464 40.000 12.38 0.00 39.59 4.40
93 94 7.288389 ACAATATGGTCATGTAAATGGCAATCT 59.712 33.333 0.00 0.00 0.00 2.40
111 112 6.253727 GGCAATCTTCGTTCGTAGATATATGG 59.746 42.308 12.96 4.79 35.04 2.74
147 152 7.249186 TGACTTGGAAATTTTGCTTTGATTG 57.751 32.000 2.25 0.00 0.00 2.67
245 250 6.839124 TCAAAATGCCTGTCATTAGTCATT 57.161 33.333 0.00 0.00 44.23 2.57
263 268 6.005823 AGTCATTCACTTTTCACATGATCCA 58.994 36.000 0.00 0.00 26.56 3.41
264 269 6.491062 AGTCATTCACTTTTCACATGATCCAA 59.509 34.615 0.00 0.00 26.56 3.53
266 271 7.274904 GTCATTCACTTTTCACATGATCCAATG 59.725 37.037 0.00 0.00 0.00 2.82
267 272 6.897706 TTCACTTTTCACATGATCCAATGA 57.102 33.333 0.00 0.00 0.00 2.57
270 275 6.716173 TCACTTTTCACATGATCCAATGAAGA 59.284 34.615 0.00 0.00 32.90 2.87
347 957 7.392113 TCACAAGAACACCTTTGAAAGAAACTA 59.608 33.333 6.49 0.00 31.42 2.24
378 990 3.442076 ACTAGTCTTGGGGATTCTTCGT 58.558 45.455 0.00 0.00 0.00 3.85
392 1004 2.248248 TCTTCGTCTCCTCCATGTTGT 58.752 47.619 0.00 0.00 0.00 3.32
403 1015 3.584834 CTCCATGTTGTACACACGATGA 58.415 45.455 0.00 0.00 38.61 2.92
504 1118 1.305930 GCCGGTGAGGTCAATCCAAC 61.306 60.000 1.90 0.00 43.70 3.77
507 1121 0.404040 GGTGAGGTCAATCCAACCCA 59.596 55.000 0.00 0.00 38.50 4.51
524 1139 2.128226 AGAAGGACCCATGCCCCT 59.872 61.111 0.00 0.00 0.00 4.79
546 1161 0.313987 GCTTTGCCGCCAAACTTAGT 59.686 50.000 0.00 0.00 36.09 2.24
551 1166 1.375523 CCGCCAAACTTAGTCGGCT 60.376 57.895 19.20 0.00 42.59 5.52
556 1171 2.527100 CCAAACTTAGTCGGCTAGTCG 58.473 52.381 11.33 11.33 0.00 4.18
598 1214 3.479489 TGGTCGCGTATACTCCTAATCA 58.521 45.455 5.77 0.00 0.00 2.57
622 1238 0.523072 AATGCCACGAGTGCACAATC 59.477 50.000 21.04 7.88 42.38 2.67
632 1253 3.482786 GAGTGCACAATCGCTACAAAAG 58.517 45.455 21.04 0.00 0.00 2.27
635 1256 2.096466 TGCACAATCGCTACAAAAGTCG 60.096 45.455 0.00 0.00 0.00 4.18
637 1258 2.073816 ACAATCGCTACAAAAGTCGGG 58.926 47.619 0.00 0.00 0.00 5.14
643 1264 2.288458 CGCTACAAAAGTCGGGAACAAA 59.712 45.455 0.00 0.00 0.00 2.83
665 1286 4.375313 AGGGGATTCCTAGTTTCAGACAT 58.625 43.478 2.01 0.00 45.98 3.06
667 1292 5.970640 AGGGGATTCCTAGTTTCAGACATAA 59.029 40.000 2.01 0.00 45.98 1.90
673 1298 7.827819 TTCCTAGTTTCAGACATAATTGACG 57.172 36.000 0.00 0.00 0.00 4.35
680 1305 2.945008 CAGACATAATTGACGCCATGGT 59.055 45.455 14.67 0.00 0.00 3.55
705 1353 8.677300 GTCATACCAAAATATCAGTTGTGATGT 58.323 33.333 0.00 0.00 43.66 3.06
711 1359 9.507280 CCAAAATATCAGTTGTGATGTTGATAC 57.493 33.333 0.00 0.00 42.06 2.24
717 1367 6.061441 TCAGTTGTGATGTTGATACCAGTTT 58.939 36.000 0.00 0.00 0.00 2.66
726 1376 8.110271 TGATGTTGATACCAGTTTACCCAAATA 58.890 33.333 0.00 0.00 0.00 1.40
729 1379 7.724506 TGTTGATACCAGTTTACCCAAATAACA 59.275 33.333 0.00 0.00 0.00 2.41
751 1401 8.947055 AACACAAATTCAGCAATAGTTTCTTT 57.053 26.923 0.00 0.00 0.00 2.52
752 1402 8.947055 ACACAAATTCAGCAATAGTTTCTTTT 57.053 26.923 0.00 0.00 0.00 2.27
753 1403 9.382275 ACACAAATTCAGCAATAGTTTCTTTTT 57.618 25.926 0.00 0.00 0.00 1.94
780 1430 9.705290 TTTAAGGGAAAATTCAGCAATAGTTTC 57.295 29.630 0.00 0.00 0.00 2.78
781 1431 7.544804 AAGGGAAAATTCAGCAATAGTTTCT 57.455 32.000 0.00 0.00 0.00 2.52
782 1432 6.928520 AGGGAAAATTCAGCAATAGTTTCTG 58.071 36.000 0.00 0.00 0.00 3.02
783 1433 6.071165 AGGGAAAATTCAGCAATAGTTTCTGG 60.071 38.462 0.00 0.00 0.00 3.86
784 1434 6.101997 GGAAAATTCAGCAATAGTTTCTGGG 58.898 40.000 0.00 0.00 0.00 4.45
785 1435 6.071391 GGAAAATTCAGCAATAGTTTCTGGGA 60.071 38.462 0.00 0.00 0.00 4.37
786 1436 6.521151 AAATTCAGCAATAGTTTCTGGGAG 57.479 37.500 0.00 0.00 0.00 4.30
787 1437 2.991250 TCAGCAATAGTTTCTGGGAGC 58.009 47.619 0.00 0.00 0.00 4.70
788 1438 2.305635 TCAGCAATAGTTTCTGGGAGCA 59.694 45.455 0.00 0.00 0.00 4.26
789 1439 3.054139 TCAGCAATAGTTTCTGGGAGCAT 60.054 43.478 0.00 0.00 0.00 3.79
807 1457 3.819337 AGCATGATCATCTTCCCATTTCG 59.181 43.478 4.86 0.00 0.00 3.46
809 1459 2.575532 TGATCATCTTCCCATTTCGGC 58.424 47.619 0.00 0.00 0.00 5.54
826 1476 7.543868 CCATTTCGGCTGTGTAAATATTTTTGA 59.456 33.333 5.91 0.00 0.00 2.69
831 1481 8.465999 TCGGCTGTGTAAATATTTTTGATGAAT 58.534 29.630 5.91 0.00 0.00 2.57
865 1515 4.497473 TGACGAAATTTCCGCTGAAAAT 57.503 36.364 12.54 0.00 43.37 1.82
881 1531 0.320374 AAATGAGAACCTGGTCGCGA 59.680 50.000 3.71 3.71 0.00 5.87
949 1624 0.678048 GAGATCCCAACAGTGCCCAC 60.678 60.000 0.00 0.00 0.00 4.61
950 1625 1.136329 AGATCCCAACAGTGCCCACT 61.136 55.000 0.00 0.00 43.61 4.00
951 1626 0.618458 GATCCCAACAGTGCCCACTA 59.382 55.000 0.00 0.00 40.20 2.74
952 1627 0.328258 ATCCCAACAGTGCCCACTAC 59.672 55.000 0.00 0.00 40.20 2.73
953 1628 1.303317 CCCAACAGTGCCCACTACC 60.303 63.158 0.00 0.00 40.20 3.18
954 1629 1.303317 CCAACAGTGCCCACTACCC 60.303 63.158 0.00 0.00 40.20 3.69
955 1630 1.671054 CAACAGTGCCCACTACCCG 60.671 63.158 0.00 0.00 40.20 5.28
956 1631 3.546714 AACAGTGCCCACTACCCGC 62.547 63.158 0.00 0.00 40.20 6.13
957 1632 4.015406 CAGTGCCCACTACCCGCA 62.015 66.667 0.00 0.00 40.20 5.69
958 1633 3.246112 AGTGCCCACTACCCGCAA 61.246 61.111 0.00 0.00 40.43 4.85
959 1634 3.053896 GTGCCCACTACCCGCAAC 61.054 66.667 0.00 0.00 33.57 4.17
960 1635 4.338710 TGCCCACTACCCGCAACC 62.339 66.667 0.00 0.00 0.00 3.77
973 1648 3.414700 CAACCGCGGCACACTCTC 61.415 66.667 28.58 0.00 0.00 3.20
974 1649 4.681978 AACCGCGGCACACTCTCC 62.682 66.667 28.58 0.00 0.00 3.71
976 1651 4.379243 CCGCGGCACACTCTCCTT 62.379 66.667 14.67 0.00 0.00 3.36
977 1652 2.357517 CGCGGCACACTCTCCTTT 60.358 61.111 0.00 0.00 0.00 3.11
978 1653 2.383527 CGCGGCACACTCTCCTTTC 61.384 63.158 0.00 0.00 0.00 2.62
979 1654 2.035442 GCGGCACACTCTCCTTTCC 61.035 63.158 0.00 0.00 0.00 3.13
1126 1819 3.539593 TTCCTCTCCTCCCCACGCA 62.540 63.158 0.00 0.00 0.00 5.24
1127 1820 3.465403 CCTCTCCTCCCCACGCAG 61.465 72.222 0.00 0.00 0.00 5.18
1128 1821 4.154347 CTCTCCTCCCCACGCAGC 62.154 72.222 0.00 0.00 0.00 5.25
1192 1885 2.151307 TCCGCTCCACCAGAGGTACT 62.151 60.000 0.00 0.00 42.69 2.73
1354 2047 1.644372 CTCGTGAGTCCTCGATCCG 59.356 63.158 7.73 0.00 37.61 4.18
1367 2060 3.458388 GATCCGGTCGATCTTCGTC 57.542 57.895 0.00 0.00 43.65 4.20
1416 2109 3.730662 GCTGACATTCGTGTTGTTGTTGT 60.731 43.478 0.00 0.00 0.00 3.32
1417 2110 4.411327 CTGACATTCGTGTTGTTGTTGTT 58.589 39.130 0.00 0.00 0.00 2.83
1418 2111 4.162072 TGACATTCGTGTTGTTGTTGTTG 58.838 39.130 0.00 0.00 0.00 3.33
1692 2415 4.214437 CCGAATAGAAATGCGATGAAAGC 58.786 43.478 0.00 0.00 36.08 3.51
1710 2435 4.732285 AAGCTGTTTCATAACTGTGACG 57.268 40.909 0.00 0.00 36.08 4.35
1832 2597 9.774742 CTCAAGACCATAAGTAAATTTAACAGC 57.225 33.333 0.00 0.00 0.00 4.40
1877 2861 6.377146 TGTTTGGTTAGAAGATATTCCAAGCC 59.623 38.462 7.75 4.08 36.07 4.35
1885 2869 4.322057 AGATATTCCAAGCCCAAGTTGT 57.678 40.909 1.45 0.00 0.00 3.32
1890 2874 1.042559 CCAAGCCCAAGTTGTGTGGT 61.043 55.000 1.45 0.00 34.01 4.16
1913 2897 4.710324 TGGAGAAATAAAACGTGACTGGT 58.290 39.130 0.00 0.00 0.00 4.00
1917 2901 6.072673 GGAGAAATAAAACGTGACTGGTTGAT 60.073 38.462 0.00 0.00 0.00 2.57
2037 3022 6.318144 GGCTAGTTTAATTCTTGTTACCCCTC 59.682 42.308 0.00 0.00 0.00 4.30
2043 3028 7.996098 TTAATTCTTGTTACCCCTCTTTCTG 57.004 36.000 0.00 0.00 0.00 3.02
2059 3044 1.578897 TCTGCCCATAGCCTAACACA 58.421 50.000 0.00 0.00 42.71 3.72
2063 3048 2.434336 TGCCCATAGCCTAACACAGTAG 59.566 50.000 0.00 0.00 42.71 2.57
2203 3211 7.666623 ACGAAAATATGAAAACCATTCACCTT 58.333 30.769 0.00 0.00 36.71 3.50
2360 3368 1.405105 TGTACGTACGTGCCCTATTCC 59.595 52.381 30.25 7.38 0.00 3.01
2647 4068 4.869861 GCTTATGCCCCTTTGTAATTTGTG 59.130 41.667 0.00 0.00 0.00 3.33
2962 4603 8.752254 GCTTTCTTTTGTAGTAAAATCAACACC 58.248 33.333 0.00 0.00 0.00 4.16
3228 4886 2.003301 GCGACCTGAGTTTTGAGGATC 58.997 52.381 0.00 0.00 33.16 3.36
3296 4966 5.589855 TCTGCTCATTTTCTCTTTGTGACAA 59.410 36.000 0.00 0.00 0.00 3.18
3329 4999 5.689835 TCATTAGGTAATGTTGCCATGCTA 58.310 37.500 9.10 0.00 42.70 3.49
3365 5119 9.635520 GTAATCCTAGTTCATTATAGCGCTTTA 57.364 33.333 18.68 9.95 0.00 1.85
3376 5221 9.241317 TCATTATAGCGCTTTAAACTACAGTAC 57.759 33.333 18.68 0.00 0.00 2.73
3423 5268 1.026584 GGTTGGCACTGGTACGTTTT 58.973 50.000 0.00 0.00 0.00 2.43
3424 5269 1.406180 GGTTGGCACTGGTACGTTTTT 59.594 47.619 0.00 0.00 0.00 1.94
3498 5559 4.894784 TGGTTTATCTGCCGGATAAGATC 58.105 43.478 5.05 0.00 44.61 2.75
3539 5601 2.290641 TGCCAATTTCCGTGACTACCAT 60.291 45.455 0.00 0.00 0.00 3.55
3546 5608 2.092323 TCCGTGACTACCATCTGTGAG 58.908 52.381 0.00 0.00 0.00 3.51
3578 5641 1.524961 CCAGCAATACCGCCACCTA 59.475 57.895 0.00 0.00 0.00 3.08
3781 6843 1.729149 GCACCAGCGCAGTTTTATGTC 60.729 52.381 11.47 0.00 0.00 3.06
3805 6867 7.169982 GTCGATAATGTACTTCCAAGGATCAAG 59.830 40.741 0.00 0.00 0.00 3.02
3918 6980 8.654230 TTCTGTTCATATATCTTCAGACTTGC 57.346 34.615 8.74 0.00 32.80 4.01
3957 7183 5.107298 GCACAGTGACTAGTTCTTCACATTC 60.107 44.000 4.15 0.00 43.94 2.67
3993 7227 6.422400 GGTCAAGTAATATTGCTCTCTGCTAC 59.578 42.308 6.52 0.00 43.37 3.58
4001 7235 1.006519 TGCTCTCTGCTACTCTCCCTT 59.993 52.381 0.00 0.00 43.37 3.95
4044 8952 4.580580 CCACCCAGTTTATTCCTTGCTATC 59.419 45.833 0.00 0.00 0.00 2.08
4068 8976 6.430925 TCTTGTTCACTTCCATTGACTTATGG 59.569 38.462 0.00 0.00 45.34 2.74
4079 8987 6.044287 TCCATTGACTTATGGCCATAGTGTAT 59.956 38.462 24.19 15.04 43.94 2.29
4514 9432 4.287067 AGCCTGAAGAGAATAAGGTCACAA 59.713 41.667 0.00 0.00 32.06 3.33
4528 9446 4.632153 AGGTCACAAAGTACAGTGCTTAG 58.368 43.478 4.09 0.00 35.76 2.18
4827 9752 4.206609 GGACATAACGCGAAACTACAGATC 59.793 45.833 15.93 0.00 0.00 2.75
4966 9894 2.159043 CGCAAGCAAGGAGGAGATAGAA 60.159 50.000 0.00 0.00 0.00 2.10
5257 10485 0.824109 CGCACTATGACCTCTGGGAA 59.176 55.000 0.00 0.00 36.25 3.97
5473 11023 6.018507 GCTGATGCATATGAATTTCCCAAAAC 60.019 38.462 6.97 0.00 39.41 2.43
5493 11049 8.649841 CCAAAACTAGTTTGTGCATAATGATTG 58.350 33.333 21.22 10.50 44.46 2.67
5637 12808 7.656948 TCCTTCAGCAAAACAAATAATTTCTGG 59.343 33.333 0.00 0.00 0.00 3.86
5666 12837 5.639506 CAGCTAGTTGCACATTTGTACTACT 59.360 40.000 0.00 4.01 45.94 2.57
5746 12991 1.444553 CACGAGGACGCTCTCCAAC 60.445 63.158 0.00 0.00 42.46 3.77
5841 13086 0.337428 AAGCAGATGGGGCAATCCTT 59.663 50.000 0.00 0.00 35.33 3.36
5872 13117 4.083862 ACCCTCCTTCGCTTCGCC 62.084 66.667 0.00 0.00 0.00 5.54
5936 13205 0.315059 GTGTTTATCATGGTCGCGCG 60.315 55.000 26.76 26.76 0.00 6.86
5973 13244 1.452651 CAGCTCCATGCCGGTGAAT 60.453 57.895 1.90 0.00 44.23 2.57
6182 13492 0.976073 CCGGGGTATATCAGCCGGAT 60.976 60.000 12.97 0.00 46.54 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 6.806739 TGCCATATATCTACGAACGAAGATTG 59.193 38.462 0.14 0.00 34.36 2.67
93 94 7.956420 AAAATGCCATATATCTACGAACGAA 57.044 32.000 0.14 0.00 0.00 3.85
120 121 6.405538 TCAAAGCAAAATTTCCAAGTCAACT 58.594 32.000 0.00 0.00 0.00 3.16
122 123 7.336427 ACAATCAAAGCAAAATTTCCAAGTCAA 59.664 29.630 0.00 0.00 0.00 3.18
123 124 6.822676 ACAATCAAAGCAAAATTTCCAAGTCA 59.177 30.769 0.00 0.00 0.00 3.41
124 125 7.250445 ACAATCAAAGCAAAATTTCCAAGTC 57.750 32.000 0.00 0.00 0.00 3.01
125 126 7.628769 AACAATCAAAGCAAAATTTCCAAGT 57.371 28.000 0.00 0.00 0.00 3.16
132 137 8.450180 ACGAAAAGAAACAATCAAAGCAAAATT 58.550 25.926 0.00 0.00 0.00 1.82
245 250 6.716173 TCTTCATTGGATCATGTGAAAAGTGA 59.284 34.615 0.00 0.00 30.96 3.41
322 329 6.389906 AGTTTCTTTCAAAGGTGTTCTTGTG 58.610 36.000 0.00 0.00 35.55 3.33
347 957 9.628500 GAATCCCCAAGACTAGTTTGTAATTAT 57.372 33.333 0.00 0.00 0.00 1.28
378 990 2.029380 CGTGTGTACAACATGGAGGAGA 60.029 50.000 0.00 0.00 41.97 3.71
403 1015 1.339929 GGTGGGAAGCAATTTTCACGT 59.660 47.619 0.00 0.00 33.08 4.49
451 1065 2.175069 AGTTAGATGGCCTCCTCGACTA 59.825 50.000 3.32 0.00 0.00 2.59
457 1071 1.127343 GCAGAGTTAGATGGCCTCCT 58.873 55.000 3.32 3.19 0.00 3.69
504 1118 2.276740 GGCATGGGTCCTTCTGGG 59.723 66.667 0.00 0.00 0.00 4.45
507 1121 1.544917 AAGGGGCATGGGTCCTTCT 60.545 57.895 0.00 0.00 39.39 2.85
537 1152 3.482722 TCGACTAGCCGACTAAGTTTG 57.517 47.619 0.00 0.00 33.14 2.93
546 1161 0.098200 CGTGTCATTCGACTAGCCGA 59.902 55.000 0.00 0.00 43.06 5.54
551 1166 1.135489 GGCACTCGTGTCATTCGACTA 60.135 52.381 0.00 0.00 43.06 2.59
556 1171 3.559238 AAATTGGCACTCGTGTCATTC 57.441 42.857 5.07 0.00 45.43 2.67
581 1196 7.448228 CATTTGATTGATTAGGAGTATACGCG 58.552 38.462 3.53 3.53 0.00 6.01
598 1214 1.068333 GTGCACTCGTGGCATTTGATT 60.068 47.619 10.32 0.00 44.11 2.57
622 1238 1.504359 TGTTCCCGACTTTTGTAGCG 58.496 50.000 0.00 0.00 0.00 4.26
632 1253 1.460504 GAATCCCCTTTGTTCCCGAC 58.539 55.000 0.00 0.00 0.00 4.79
635 1256 2.581246 ACTAGGAATCCCCTTTGTTCCC 59.419 50.000 0.00 0.00 44.85 3.97
637 1258 5.321927 TGAAACTAGGAATCCCCTTTGTTC 58.678 41.667 0.00 0.00 44.85 3.18
660 1281 3.206150 GACCATGGCGTCAATTATGTCT 58.794 45.455 13.04 0.00 32.74 3.41
665 1286 3.118223 TGGTATGACCATGGCGTCAATTA 60.118 43.478 13.04 0.00 44.79 1.40
667 1292 1.211703 TGGTATGACCATGGCGTCAAT 59.788 47.619 13.04 0.99 44.79 2.57
680 1305 8.806429 ACATCACAACTGATATTTTGGTATGA 57.194 30.769 11.91 0.00 35.17 2.15
692 1317 5.809001 ACTGGTATCAACATCACAACTGAT 58.191 37.500 0.00 0.00 37.65 2.90
705 1353 7.724506 TGTGTTATTTGGGTAAACTGGTATCAA 59.275 33.333 0.00 0.00 0.00 2.57
711 1359 7.928706 TGAATTTGTGTTATTTGGGTAAACTGG 59.071 33.333 0.00 0.00 0.00 4.00
717 1367 6.656632 TGCTGAATTTGTGTTATTTGGGTA 57.343 33.333 0.00 0.00 0.00 3.69
726 1376 8.947055 AAAGAAACTATTGCTGAATTTGTGTT 57.053 26.923 0.00 0.00 0.00 3.32
754 1404 9.705290 GAAACTATTGCTGAATTTTCCCTTAAA 57.295 29.630 0.00 0.00 0.00 1.52
755 1405 9.088987 AGAAACTATTGCTGAATTTTCCCTTAA 57.911 29.630 0.00 0.00 0.00 1.85
756 1406 8.522830 CAGAAACTATTGCTGAATTTTCCCTTA 58.477 33.333 0.00 0.00 0.00 2.69
757 1407 7.381323 CAGAAACTATTGCTGAATTTTCCCTT 58.619 34.615 0.00 0.00 0.00 3.95
759 1409 6.101997 CCAGAAACTATTGCTGAATTTTCCC 58.898 40.000 0.00 0.00 0.00 3.97
760 1410 6.071391 TCCCAGAAACTATTGCTGAATTTTCC 60.071 38.462 0.00 0.00 0.00 3.13
761 1411 6.924111 TCCCAGAAACTATTGCTGAATTTTC 58.076 36.000 0.00 0.00 0.00 2.29
763 1413 5.105595 GCTCCCAGAAACTATTGCTGAATTT 60.106 40.000 0.00 0.00 0.00 1.82
765 1415 3.950395 GCTCCCAGAAACTATTGCTGAAT 59.050 43.478 0.00 0.00 0.00 2.57
769 1419 3.054139 TCATGCTCCCAGAAACTATTGCT 60.054 43.478 0.00 0.00 0.00 3.91
770 1420 3.282021 TCATGCTCCCAGAAACTATTGC 58.718 45.455 0.00 0.00 0.00 3.56
771 1421 5.128205 TGATCATGCTCCCAGAAACTATTG 58.872 41.667 0.00 0.00 0.00 1.90
772 1422 5.378230 TGATCATGCTCCCAGAAACTATT 57.622 39.130 0.00 0.00 0.00 1.73
773 1423 5.310068 AGATGATCATGCTCCCAGAAACTAT 59.690 40.000 14.30 0.00 0.00 2.12
774 1424 4.657504 AGATGATCATGCTCCCAGAAACTA 59.342 41.667 14.30 0.00 0.00 2.24
775 1425 3.458857 AGATGATCATGCTCCCAGAAACT 59.541 43.478 14.30 0.00 0.00 2.66
776 1426 3.818180 AGATGATCATGCTCCCAGAAAC 58.182 45.455 14.30 0.00 0.00 2.78
777 1427 4.458397 GAAGATGATCATGCTCCCAGAAA 58.542 43.478 14.30 0.00 0.00 2.52
778 1428 3.181447 GGAAGATGATCATGCTCCCAGAA 60.181 47.826 14.30 0.00 0.00 3.02
779 1429 2.371179 GGAAGATGATCATGCTCCCAGA 59.629 50.000 14.30 0.00 0.00 3.86
780 1430 2.552591 GGGAAGATGATCATGCTCCCAG 60.553 54.545 30.55 0.00 37.85 4.45
781 1431 1.422781 GGGAAGATGATCATGCTCCCA 59.577 52.381 30.55 0.00 37.85 4.37
782 1432 1.422781 TGGGAAGATGATCATGCTCCC 59.577 52.381 29.63 29.63 38.18 4.30
783 1433 2.945080 TGGGAAGATGATCATGCTCC 57.055 50.000 14.30 17.06 0.00 4.70
784 1434 4.083431 CGAAATGGGAAGATGATCATGCTC 60.083 45.833 14.30 8.88 0.00 4.26
785 1435 3.819337 CGAAATGGGAAGATGATCATGCT 59.181 43.478 14.30 7.35 0.00 3.79
786 1436 3.057736 CCGAAATGGGAAGATGATCATGC 60.058 47.826 14.30 5.02 0.00 4.06
787 1437 3.057736 GCCGAAATGGGAAGATGATCATG 60.058 47.826 14.30 0.00 38.63 3.07
788 1438 3.152341 GCCGAAATGGGAAGATGATCAT 58.848 45.455 8.25 8.25 38.63 2.45
789 1439 2.173356 AGCCGAAATGGGAAGATGATCA 59.827 45.455 0.00 0.00 38.63 2.92
865 1515 0.320374 AATTCGCGACCAGGTTCTCA 59.680 50.000 9.15 0.00 0.00 3.27
881 1531 1.375551 GGTGTGGGTAATCGCGAATT 58.624 50.000 15.24 10.88 0.00 2.17
916 1566 1.658686 GATCTCCCGAGTGACGTGCT 61.659 60.000 0.00 0.00 40.78 4.40
956 1631 3.414700 GAGAGTGTGCCGCGGTTG 61.415 66.667 28.70 0.72 0.00 3.77
957 1632 4.681978 GGAGAGTGTGCCGCGGTT 62.682 66.667 28.70 7.51 0.00 4.44
959 1634 3.883744 AAAGGAGAGTGTGCCGCGG 62.884 63.158 24.05 24.05 0.00 6.46
960 1635 2.357517 AAAGGAGAGTGTGCCGCG 60.358 61.111 0.00 0.00 0.00 6.46
961 1636 2.035442 GGAAAGGAGAGTGTGCCGC 61.035 63.158 0.00 0.00 0.00 6.53
962 1637 1.376037 GGGAAAGGAGAGTGTGCCG 60.376 63.158 0.00 0.00 0.00 5.69
963 1638 0.035915 GAGGGAAAGGAGAGTGTGCC 60.036 60.000 0.00 0.00 0.00 5.01
964 1639 0.035915 GGAGGGAAAGGAGAGTGTGC 60.036 60.000 0.00 0.00 0.00 4.57
965 1640 1.552792 GAGGAGGGAAAGGAGAGTGTG 59.447 57.143 0.00 0.00 0.00 3.82
966 1641 1.893210 CGAGGAGGGAAAGGAGAGTGT 60.893 57.143 0.00 0.00 0.00 3.55
967 1642 0.820871 CGAGGAGGGAAAGGAGAGTG 59.179 60.000 0.00 0.00 0.00 3.51
968 1643 0.973496 GCGAGGAGGGAAAGGAGAGT 60.973 60.000 0.00 0.00 0.00 3.24
969 1644 0.972983 TGCGAGGAGGGAAAGGAGAG 60.973 60.000 0.00 0.00 0.00 3.20
970 1645 1.078528 TGCGAGGAGGGAAAGGAGA 59.921 57.895 0.00 0.00 0.00 3.71
971 1646 1.219393 GTGCGAGGAGGGAAAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
972 1647 2.291043 GGTGCGAGGAGGGAAAGGA 61.291 63.158 0.00 0.00 0.00 3.36
973 1648 2.269241 GGTGCGAGGAGGGAAAGG 59.731 66.667 0.00 0.00 0.00 3.11
974 1649 2.125512 CGGTGCGAGGAGGGAAAG 60.126 66.667 0.00 0.00 0.00 2.62
975 1650 2.602267 TCGGTGCGAGGAGGGAAA 60.602 61.111 0.00 0.00 0.00 3.13
976 1651 3.379445 GTCGGTGCGAGGAGGGAA 61.379 66.667 0.00 0.00 36.23 3.97
1354 2047 1.933519 GACGCGACGAAGATCGACC 60.934 63.158 15.93 0.00 45.13 4.79
1416 2109 2.263540 GCGCGTTCTAGGGTCCAA 59.736 61.111 8.43 0.00 0.00 3.53
1417 2110 3.766691 GGCGCGTTCTAGGGTCCA 61.767 66.667 8.43 0.00 0.00 4.02
1418 2111 4.525949 GGGCGCGTTCTAGGGTCC 62.526 72.222 8.43 0.00 41.54 4.46
1671 2373 4.902448 CAGCTTTCATCGCATTTCTATTCG 59.098 41.667 0.00 0.00 0.00 3.34
1692 2415 6.100004 AGATACCGTCACAGTTATGAAACAG 58.900 40.000 0.00 0.00 38.12 3.16
1736 2461 5.912892 TCAAGATACATGAAGATACCGCAA 58.087 37.500 0.00 0.00 0.00 4.85
1826 2591 6.307776 ACTATATCTAGCAGGTCAGCTGTTA 58.692 40.000 14.67 2.71 46.11 2.41
1832 2597 8.031864 CCAAACATACTATATCTAGCAGGTCAG 58.968 40.741 0.00 0.00 0.00 3.51
1877 2861 2.051334 TCTCCAACCACACAACTTGG 57.949 50.000 0.00 0.00 40.32 3.61
1885 2869 4.882427 TCACGTTTTATTTCTCCAACCACA 59.118 37.500 0.00 0.00 0.00 4.17
1890 2874 5.127491 ACCAGTCACGTTTTATTTCTCCAA 58.873 37.500 0.00 0.00 0.00 3.53
2037 3022 2.945668 GTGTTAGGCTATGGGCAGAAAG 59.054 50.000 5.19 0.00 44.01 2.62
2043 3028 2.807108 GCTACTGTGTTAGGCTATGGGC 60.807 54.545 0.00 0.00 40.90 5.36
2059 3044 3.808728 TGAAGAAAGCTTGTGTGCTACT 58.191 40.909 0.00 0.00 43.24 2.57
2063 3048 3.631145 TCATGAAGAAAGCTTGTGTGC 57.369 42.857 0.00 0.00 33.61 4.57
2095 3080 0.850100 TCCCCAAGAGGAAGCAACAA 59.150 50.000 0.00 0.00 38.24 2.83
2203 3211 1.072489 TCAGGACGCAACCATGGTTTA 59.928 47.619 27.82 3.33 36.00 2.01
2247 3255 5.069648 CACAAGATCTGCAGAATAGTAGGGA 59.930 44.000 22.50 0.00 0.00 4.20
2360 3368 8.830201 TTGTCCTTCAACAAATTGATAAATGG 57.170 30.769 0.00 0.00 44.36 3.16
2597 3679 2.010497 GAGTCAATTCGGAAAGGAGGC 58.990 52.381 0.00 0.00 0.00 4.70
2598 3680 2.237392 AGGAGTCAATTCGGAAAGGAGG 59.763 50.000 0.00 0.00 0.00 4.30
2647 4068 5.449177 GCCAGGAGCTAACATGATAACAAAC 60.449 44.000 0.00 0.00 38.99 2.93
3228 4886 3.393800 CCCAGCAGTACAATCTTATCGG 58.606 50.000 0.00 0.00 0.00 4.18
3329 4999 8.466617 AATGAACTAGGATTACAGTATCGACT 57.533 34.615 0.00 0.00 35.80 4.18
3376 5221 4.126437 TGAATAACACATATGACAGCGGG 58.874 43.478 10.38 0.00 0.00 6.13
3423 5268 2.094078 GCCAGCAAACTATCATGCCAAA 60.094 45.455 0.00 0.00 43.57 3.28
3424 5269 1.477700 GCCAGCAAACTATCATGCCAA 59.522 47.619 0.00 0.00 43.57 4.52
3425 5270 1.105457 GCCAGCAAACTATCATGCCA 58.895 50.000 0.00 0.00 43.57 4.92
3426 5271 0.029834 CGCCAGCAAACTATCATGCC 59.970 55.000 0.00 0.00 43.57 4.40
3428 5273 1.331756 GTCCGCCAGCAAACTATCATG 59.668 52.381 0.00 0.00 0.00 3.07
3429 5274 1.065491 TGTCCGCCAGCAAACTATCAT 60.065 47.619 0.00 0.00 0.00 2.45
3431 5276 1.668419 ATGTCCGCCAGCAAACTATC 58.332 50.000 0.00 0.00 0.00 2.08
3432 5277 2.838736 CTATGTCCGCCAGCAAACTAT 58.161 47.619 0.00 0.00 0.00 2.12
3433 5278 1.742411 GCTATGTCCGCCAGCAAACTA 60.742 52.381 0.00 0.00 35.35 2.24
3436 5281 0.539518 TAGCTATGTCCGCCAGCAAA 59.460 50.000 0.00 0.00 37.78 3.68
3498 5559 8.514136 TTGGCAAAATTTTAATCACTACGAAG 57.486 30.769 2.44 0.00 0.00 3.79
3517 5579 2.156098 GGTAGTCACGGAAATTGGCAA 58.844 47.619 0.68 0.68 0.00 4.52
3781 6843 6.425114 CCTTGATCCTTGGAAGTACATTATCG 59.575 42.308 0.00 0.00 0.00 2.92
3918 6980 8.256611 AGTCACTGTGCTAAACAATTATGTAG 57.743 34.615 2.12 0.00 39.40 2.74
3957 7183 7.456253 CAATATTACTTGACCACAAAGACTCG 58.544 38.462 0.00 0.00 35.49 4.18
3993 7227 2.002625 CCAAGGGGGAAAGGGAGAG 58.997 63.158 0.00 0.00 40.01 3.20
4001 7235 2.211575 TGTAGGGCCAAGGGGGAA 59.788 61.111 6.18 0.00 40.01 3.97
4044 8952 6.615088 CCATAAGTCAATGGAAGTGAACAAG 58.385 40.000 0.00 0.00 45.34 3.16
4068 8976 7.786178 TGATGAGTTTACAATACACTATGGC 57.214 36.000 0.00 0.00 0.00 4.40
4079 8987 6.883756 TCATACCTGCAATGATGAGTTTACAA 59.116 34.615 0.00 0.00 0.00 2.41
4623 9548 4.022416 TGCACGCAGAATGAAACCTATTTT 60.022 37.500 0.00 0.00 39.69 1.82
4966 9894 5.565439 GCTGGTTACATGCTTCTTGAAATGT 60.565 40.000 0.00 6.12 37.11 2.71
5179 10107 3.548745 GTGATCATCACATCCTCCACA 57.451 47.619 13.26 0.00 46.22 4.17
5257 10485 1.075601 TGCAATGGGAGAGAGGGTTT 58.924 50.000 0.00 0.00 0.00 3.27
5430 10980 6.037500 GCATCAGCTGAACTTTCATACACATA 59.962 38.462 22.50 0.00 36.46 2.29
5435 10985 4.952262 TGCATCAGCTGAACTTTCATAC 57.048 40.909 22.50 0.00 42.74 2.39
5493 11049 7.632721 AGTGAAAATTGTTTGTTCAATCATGC 58.367 30.769 0.00 0.00 37.09 4.06
5637 12808 4.023707 ACAAATGTGCAACTAGCTGTTCTC 60.024 41.667 0.00 0.00 45.94 2.87
5666 12837 4.539152 GTCGACGTTCGGCAAGTA 57.461 55.556 0.00 0.00 45.01 2.24
5746 12991 3.499737 GTCTTCCATGGCGCGTGG 61.500 66.667 20.80 20.80 41.56 4.94
5800 13045 4.838486 CTGCTCGAGGGCGACGAC 62.838 72.222 15.58 0.00 42.51 4.34
5919 13188 1.275657 CCGCGCGACCATGATAAAC 59.724 57.895 34.63 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.