Multiple sequence alignment - TraesCS7A01G444000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G444000 chr7A 100.000 2460 0 0 1 2460 638520511 638518052 0.000000e+00 4543
1 TraesCS7A01G444000 chr7A 85.976 820 111 3 1 818 514976947 514976130 0.000000e+00 874
2 TraesCS7A01G444000 chr7A 90.196 204 18 2 824 1026 372648383 372648181 5.220000e-67 265
3 TraesCS7A01G444000 chr7A 88.785 214 21 3 820 1032 303434217 303434428 2.430000e-65 259
4 TraesCS7A01G444000 chr6B 99.421 1210 7 0 1251 2460 596613747 596612538 0.000000e+00 2196
5 TraesCS7A01G444000 chr7B 99.421 1210 6 1 1251 2460 644445022 644443814 0.000000e+00 2194
6 TraesCS7A01G444000 chr7B 96.748 123 3 1 1127 1248 644195897 644195775 1.150000e-48 204
7 TraesCS7A01G444000 chr2B 99.256 1210 9 0 1251 2460 391237107 391235898 0.000000e+00 2185
8 TraesCS7A01G444000 chr2B 99.256 1210 9 0 1251 2460 799242509 799243718 0.000000e+00 2185
9 TraesCS7A01G444000 chr2B 89.939 815 81 1 5 818 402255044 402254230 0.000000e+00 1050
10 TraesCS7A01G444000 chr7D 99.174 1210 10 0 1251 2460 382074765 382075974 0.000000e+00 2180
11 TraesCS7A01G444000 chr3B 99.174 1210 10 0 1251 2460 92130914 92132123 0.000000e+00 2180
12 TraesCS7A01G444000 chr3B 95.355 818 37 1 1 818 392795662 392794846 0.000000e+00 1299
13 TraesCS7A01G444000 chr3B 86.911 764 95 4 1 762 612407594 612408354 0.000000e+00 852
14 TraesCS7A01G444000 chrUn 99.174 1210 6 1 1251 2460 170996420 170997625 0.000000e+00 2176
15 TraesCS7A01G444000 chrUn 88.732 213 18 5 820 1030 138415873 138415665 3.140000e-64 255
16 TraesCS7A01G444000 chr1D 99.091 1210 10 1 1251 2460 212457451 212456243 0.000000e+00 2172
17 TraesCS7A01G444000 chr1D 96.507 687 24 0 1 687 437427944 437428630 0.000000e+00 1136
18 TraesCS7A01G444000 chr4B 99.008 1210 12 0 1251 2460 623335477 623336686 0.000000e+00 2169
19 TraesCS7A01G444000 chr5A 86.797 818 108 0 1 818 665684314 665683497 0.000000e+00 913
20 TraesCS7A01G444000 chr2A 86.207 812 110 2 8 818 628634842 628634032 0.000000e+00 878
21 TraesCS7A01G444000 chr2A 91.220 205 15 3 820 1023 565815552 565815350 2.410000e-70 276
22 TraesCS7A01G444000 chr6D 85.819 818 116 0 1 818 10901126 10901943 0.000000e+00 869
23 TraesCS7A01G444000 chr4D 85.381 814 112 6 8 818 448181004 448180195 0.000000e+00 837
24 TraesCS7A01G444000 chr3D 87.773 229 24 4 807 1033 484803894 484804120 5.220000e-67 265
25 TraesCS7A01G444000 chr3D 86.207 232 28 4 809 1038 70280424 70280653 5.250000e-62 248
26 TraesCS7A01G444000 chr6A 89.423 208 21 1 820 1026 384090282 384090075 6.750000e-66 261
27 TraesCS7A01G444000 chr3A 89.151 212 20 2 820 1030 163016506 163016715 6.750000e-66 261
28 TraesCS7A01G444000 chr5B 88.679 212 23 1 820 1031 659301518 659301308 8.730000e-65 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G444000 chr7A 638518052 638520511 2459 True 4543 4543 100.000 1 2460 1 chr7A.!!$R3 2459
1 TraesCS7A01G444000 chr7A 514976130 514976947 817 True 874 874 85.976 1 818 1 chr7A.!!$R2 817
2 TraesCS7A01G444000 chr6B 596612538 596613747 1209 True 2196 2196 99.421 1251 2460 1 chr6B.!!$R1 1209
3 TraesCS7A01G444000 chr7B 644443814 644445022 1208 True 2194 2194 99.421 1251 2460 1 chr7B.!!$R2 1209
4 TraesCS7A01G444000 chr2B 391235898 391237107 1209 True 2185 2185 99.256 1251 2460 1 chr2B.!!$R1 1209
5 TraesCS7A01G444000 chr2B 799242509 799243718 1209 False 2185 2185 99.256 1251 2460 1 chr2B.!!$F1 1209
6 TraesCS7A01G444000 chr2B 402254230 402255044 814 True 1050 1050 89.939 5 818 1 chr2B.!!$R2 813
7 TraesCS7A01G444000 chr7D 382074765 382075974 1209 False 2180 2180 99.174 1251 2460 1 chr7D.!!$F1 1209
8 TraesCS7A01G444000 chr3B 92130914 92132123 1209 False 2180 2180 99.174 1251 2460 1 chr3B.!!$F1 1209
9 TraesCS7A01G444000 chr3B 392794846 392795662 816 True 1299 1299 95.355 1 818 1 chr3B.!!$R1 817
10 TraesCS7A01G444000 chr3B 612407594 612408354 760 False 852 852 86.911 1 762 1 chr3B.!!$F2 761
11 TraesCS7A01G444000 chrUn 170996420 170997625 1205 False 2176 2176 99.174 1251 2460 1 chrUn.!!$F1 1209
12 TraesCS7A01G444000 chr1D 212456243 212457451 1208 True 2172 2172 99.091 1251 2460 1 chr1D.!!$R1 1209
13 TraesCS7A01G444000 chr1D 437427944 437428630 686 False 1136 1136 96.507 1 687 1 chr1D.!!$F1 686
14 TraesCS7A01G444000 chr4B 623335477 623336686 1209 False 2169 2169 99.008 1251 2460 1 chr4B.!!$F1 1209
15 TraesCS7A01G444000 chr5A 665683497 665684314 817 True 913 913 86.797 1 818 1 chr5A.!!$R1 817
16 TraesCS7A01G444000 chr2A 628634032 628634842 810 True 878 878 86.207 8 818 1 chr2A.!!$R2 810
17 TraesCS7A01G444000 chr6D 10901126 10901943 817 False 869 869 85.819 1 818 1 chr6D.!!$F1 817
18 TraesCS7A01G444000 chr4D 448180195 448181004 809 True 837 837 85.381 8 818 1 chr4D.!!$R1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 841 0.179045 AACGACAAGACTTGCCTGCT 60.179 50.0 15.24 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1842 2.369394 GTCGAGGATTTCAGGCCAATT 58.631 47.619 5.01 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.032799 CGCCTTGAGTAACTTTGCACAA 59.967 45.455 0.00 0.00 0.00 3.33
92 95 2.731976 CACAAAGAGAGTCAGGCGTAAC 59.268 50.000 0.00 0.00 0.00 2.50
93 96 2.364324 ACAAAGAGAGTCAGGCGTAACA 59.636 45.455 0.00 0.00 0.00 2.41
148 151 5.278169 CCAAGGTTGAACAACTCAAGATCTG 60.278 44.000 15.60 0.00 44.83 2.90
198 201 2.373224 TGTGTCATTGTGTGCCAAGAA 58.627 42.857 0.00 0.00 36.25 2.52
461 467 6.390048 AGATCCAATATCAGATGGCATTCT 57.610 37.500 0.00 0.00 36.62 2.40
546 552 9.186837 CTAGTAGATTCTGGACAACCTTTACTA 57.813 37.037 0.00 0.00 37.04 1.82
720 726 4.225497 GGAGCCACCTGAATTCCG 57.775 61.111 2.27 0.00 35.41 4.30
765 771 2.291217 GGATTTGAGGAGGCCTGAAAGT 60.291 50.000 12.00 0.00 39.80 2.66
818 824 2.198304 ATTGGGTCTCCCTGCCGAAC 62.198 60.000 6.38 0.00 45.70 3.95
819 825 4.452733 GGGTCTCCCTGCCGAACG 62.453 72.222 0.00 0.00 41.34 3.95
820 826 3.379445 GGTCTCCCTGCCGAACGA 61.379 66.667 0.00 0.00 0.00 3.85
821 827 2.126031 GTCTCCCTGCCGAACGAC 60.126 66.667 0.00 0.00 0.00 4.34
822 828 2.599281 TCTCCCTGCCGAACGACA 60.599 61.111 0.00 0.00 0.00 4.35
823 829 2.204461 TCTCCCTGCCGAACGACAA 61.204 57.895 0.00 0.00 0.00 3.18
824 830 1.738099 CTCCCTGCCGAACGACAAG 60.738 63.158 0.00 0.00 0.00 3.16
825 831 2.154798 CTCCCTGCCGAACGACAAGA 62.155 60.000 0.00 0.00 0.00 3.02
826 832 2.027625 CCCTGCCGAACGACAAGAC 61.028 63.158 0.00 0.00 0.00 3.01
827 833 1.006102 CCTGCCGAACGACAAGACT 60.006 57.895 0.00 0.00 0.00 3.24
828 834 0.600255 CCTGCCGAACGACAAGACTT 60.600 55.000 0.00 0.00 0.00 3.01
829 835 0.508641 CTGCCGAACGACAAGACTTG 59.491 55.000 13.77 13.77 0.00 3.16
830 836 1.204312 GCCGAACGACAAGACTTGC 59.796 57.895 15.24 7.25 0.00 4.01
831 837 1.860078 CCGAACGACAAGACTTGCC 59.140 57.895 15.24 2.98 0.00 4.52
832 838 0.600255 CCGAACGACAAGACTTGCCT 60.600 55.000 15.24 0.00 0.00 4.75
833 839 0.508641 CGAACGACAAGACTTGCCTG 59.491 55.000 15.24 7.62 0.00 4.85
834 840 0.235926 GAACGACAAGACTTGCCTGC 59.764 55.000 15.24 2.00 0.00 4.85
835 841 0.179045 AACGACAAGACTTGCCTGCT 60.179 50.000 15.24 0.00 0.00 4.24
836 842 0.601311 ACGACAAGACTTGCCTGCTC 60.601 55.000 15.24 4.09 0.00 4.26
837 843 1.294659 CGACAAGACTTGCCTGCTCC 61.295 60.000 15.24 0.00 0.00 4.70
838 844 0.957888 GACAAGACTTGCCTGCTCCC 60.958 60.000 15.24 0.00 0.00 4.30
839 845 1.377994 CAAGACTTGCCTGCTCCCT 59.622 57.895 1.43 0.00 0.00 4.20
840 846 0.251077 CAAGACTTGCCTGCTCCCTT 60.251 55.000 1.43 0.00 0.00 3.95
841 847 1.003580 CAAGACTTGCCTGCTCCCTTA 59.996 52.381 1.43 0.00 0.00 2.69
842 848 0.908198 AGACTTGCCTGCTCCCTTAG 59.092 55.000 0.00 0.00 0.00 2.18
851 857 4.148825 CTCCCTTAGCGTGCGCCT 62.149 66.667 13.21 0.00 43.17 5.52
852 858 2.756691 TCCCTTAGCGTGCGCCTA 60.757 61.111 13.21 0.00 43.17 3.93
853 859 2.088674 CTCCCTTAGCGTGCGCCTAT 62.089 60.000 13.21 0.00 43.17 2.57
854 860 1.664965 CCCTTAGCGTGCGCCTATC 60.665 63.158 13.21 0.00 43.17 2.08
855 861 1.664965 CCTTAGCGTGCGCCTATCC 60.665 63.158 13.21 0.00 43.17 2.59
856 862 2.016704 CTTAGCGTGCGCCTATCCG 61.017 63.158 13.21 0.03 43.17 4.18
857 863 2.679132 CTTAGCGTGCGCCTATCCGT 62.679 60.000 13.21 0.00 43.17 4.69
858 864 2.947118 TTAGCGTGCGCCTATCCGTG 62.947 60.000 13.21 0.00 43.17 4.94
860 866 4.873129 CGTGCGCCTATCCGTGCT 62.873 66.667 4.18 0.00 40.01 4.40
861 867 2.962253 GTGCGCCTATCCGTGCTC 60.962 66.667 4.18 0.00 40.01 4.26
862 868 4.221422 TGCGCCTATCCGTGCTCC 62.221 66.667 4.18 0.00 40.01 4.70
863 869 4.971125 GCGCCTATCCGTGCTCCC 62.971 72.222 0.00 0.00 36.32 4.30
864 870 4.647615 CGCCTATCCGTGCTCCCG 62.648 72.222 0.00 0.00 0.00 5.14
865 871 4.971125 GCCTATCCGTGCTCCCGC 62.971 72.222 0.00 0.00 0.00 6.13
866 872 3.536917 CCTATCCGTGCTCCCGCA 61.537 66.667 0.00 0.00 45.60 5.69
874 880 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
875 881 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
876 882 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
877 883 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
878 884 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
879 885 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
880 886 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
881 887 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
882 888 1.334059 CCGCATACGTGGCATGATTTC 60.334 52.381 14.82 0.00 35.59 2.17
883 889 1.330213 CGCATACGTGGCATGATTTCA 59.670 47.619 14.82 0.00 33.53 2.69
884 890 2.031769 CGCATACGTGGCATGATTTCAT 60.032 45.455 14.82 0.00 33.57 2.57
885 891 3.548616 CGCATACGTGGCATGATTTCATT 60.549 43.478 14.82 0.00 31.89 2.57
886 892 4.319405 CGCATACGTGGCATGATTTCATTA 60.319 41.667 14.82 0.00 31.89 1.90
887 893 5.149273 GCATACGTGGCATGATTTCATTAG 58.851 41.667 14.82 0.00 33.61 1.73
888 894 5.049474 GCATACGTGGCATGATTTCATTAGA 60.049 40.000 14.82 0.00 33.61 2.10
889 895 6.513230 GCATACGTGGCATGATTTCATTAGAA 60.513 38.462 14.82 0.00 33.61 2.10
890 896 7.587629 CATACGTGGCATGATTTCATTAGAAT 58.412 34.615 14.82 0.00 33.61 2.40
891 897 8.720562 CATACGTGGCATGATTTCATTAGAATA 58.279 33.333 14.82 0.00 33.61 1.75
892 898 7.566760 ACGTGGCATGATTTCATTAGAATAA 57.433 32.000 14.82 0.00 33.61 1.40
893 899 7.995289 ACGTGGCATGATTTCATTAGAATAAA 58.005 30.769 14.82 0.00 33.61 1.40
894 900 8.131100 ACGTGGCATGATTTCATTAGAATAAAG 58.869 33.333 14.82 0.00 33.61 1.85
895 901 8.131100 CGTGGCATGATTTCATTAGAATAAAGT 58.869 33.333 0.00 0.00 33.61 2.66
905 911 8.732746 TTCATTAGAATAAAGTAAGGTCCAGC 57.267 34.615 0.00 0.00 0.00 4.85
906 912 7.280356 TCATTAGAATAAAGTAAGGTCCAGCC 58.720 38.462 0.00 0.00 37.58 4.85
907 913 4.505324 AGAATAAAGTAAGGTCCAGCCC 57.495 45.455 0.00 0.00 38.26 5.19
908 914 3.202373 AGAATAAAGTAAGGTCCAGCCCC 59.798 47.826 0.00 0.00 38.26 5.80
909 915 2.047769 TAAAGTAAGGTCCAGCCCCA 57.952 50.000 0.00 0.00 38.26 4.96
910 916 0.404426 AAAGTAAGGTCCAGCCCCAC 59.596 55.000 0.00 0.00 38.26 4.61
911 917 1.498176 AAGTAAGGTCCAGCCCCACC 61.498 60.000 0.00 0.00 38.26 4.61
912 918 2.612746 TAAGGTCCAGCCCCACCC 60.613 66.667 0.00 0.00 38.26 4.61
913 919 3.202591 TAAGGTCCAGCCCCACCCT 62.203 63.158 0.00 0.00 38.26 4.34
916 922 2.936032 GTCCAGCCCCACCCTCTT 60.936 66.667 0.00 0.00 0.00 2.85
917 923 1.615424 GTCCAGCCCCACCCTCTTA 60.615 63.158 0.00 0.00 0.00 2.10
918 924 1.162329 TCCAGCCCCACCCTCTTAA 59.838 57.895 0.00 0.00 0.00 1.85
919 925 0.476808 TCCAGCCCCACCCTCTTAAA 60.477 55.000 0.00 0.00 0.00 1.52
920 926 0.407918 CCAGCCCCACCCTCTTAAAA 59.592 55.000 0.00 0.00 0.00 1.52
921 927 1.007118 CCAGCCCCACCCTCTTAAAAT 59.993 52.381 0.00 0.00 0.00 1.82
922 928 2.379005 CAGCCCCACCCTCTTAAAATC 58.621 52.381 0.00 0.00 0.00 2.17
923 929 2.000048 AGCCCCACCCTCTTAAAATCA 59.000 47.619 0.00 0.00 0.00 2.57
924 930 2.024941 AGCCCCACCCTCTTAAAATCAG 60.025 50.000 0.00 0.00 0.00 2.90
925 931 2.950418 GCCCCACCCTCTTAAAATCAGG 60.950 54.545 0.00 0.00 0.00 3.86
950 956 7.978925 GGGGGAAGATGATTAGATTAGAAAGA 58.021 38.462 0.00 0.00 0.00 2.52
951 957 8.440771 GGGGGAAGATGATTAGATTAGAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
952 958 9.853177 GGGGAAGATGATTAGATTAGAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
970 976 8.178313 AGAAAGAAAAAGAGAAAAAGACAGTCG 58.822 33.333 0.00 0.00 0.00 4.18
971 977 6.986904 AGAAAAAGAGAAAAAGACAGTCGT 57.013 33.333 0.00 0.00 0.00 4.34
972 978 6.776094 AGAAAAAGAGAAAAAGACAGTCGTG 58.224 36.000 0.00 0.00 0.00 4.35
973 979 5.485662 AAAAGAGAAAAAGACAGTCGTGG 57.514 39.130 0.00 0.00 0.00 4.94
974 980 3.113260 AGAGAAAAAGACAGTCGTGGG 57.887 47.619 0.00 0.00 0.00 4.61
975 981 2.698797 AGAGAAAAAGACAGTCGTGGGA 59.301 45.455 0.00 0.00 0.00 4.37
976 982 3.325135 AGAGAAAAAGACAGTCGTGGGAT 59.675 43.478 0.00 0.00 0.00 3.85
977 983 4.527038 AGAGAAAAAGACAGTCGTGGGATA 59.473 41.667 0.00 0.00 0.00 2.59
978 984 5.011738 AGAGAAAAAGACAGTCGTGGGATAA 59.988 40.000 0.00 0.00 0.00 1.75
979 985 5.617252 AGAAAAAGACAGTCGTGGGATAAA 58.383 37.500 0.00 0.00 0.00 1.40
980 986 5.701290 AGAAAAAGACAGTCGTGGGATAAAG 59.299 40.000 0.00 0.00 0.00 1.85
981 987 4.618920 AAAGACAGTCGTGGGATAAAGT 57.381 40.909 0.00 0.00 0.00 2.66
982 988 3.594603 AGACAGTCGTGGGATAAAGTG 57.405 47.619 0.00 0.00 0.00 3.16
983 989 3.162666 AGACAGTCGTGGGATAAAGTGA 58.837 45.455 0.00 0.00 0.00 3.41
984 990 3.193691 AGACAGTCGTGGGATAAAGTGAG 59.806 47.826 0.00 0.00 0.00 3.51
985 991 3.162666 ACAGTCGTGGGATAAAGTGAGA 58.837 45.455 0.00 0.00 0.00 3.27
986 992 3.193691 ACAGTCGTGGGATAAAGTGAGAG 59.806 47.826 0.00 0.00 0.00 3.20
987 993 2.166664 AGTCGTGGGATAAAGTGAGAGC 59.833 50.000 0.00 0.00 0.00 4.09
988 994 2.094182 GTCGTGGGATAAAGTGAGAGCA 60.094 50.000 0.00 0.00 0.00 4.26
989 995 2.094182 TCGTGGGATAAAGTGAGAGCAC 60.094 50.000 0.00 0.00 45.49 4.40
999 1005 1.367659 GTGAGAGCACAGATGGAAGC 58.632 55.000 0.00 0.00 44.51 3.86
1000 1006 0.978907 TGAGAGCACAGATGGAAGCA 59.021 50.000 0.00 0.00 0.00 3.91
1001 1007 1.558294 TGAGAGCACAGATGGAAGCAT 59.442 47.619 0.00 0.00 0.00 3.79
1002 1008 1.941294 GAGAGCACAGATGGAAGCATG 59.059 52.381 0.00 0.00 0.00 4.06
1003 1009 1.022735 GAGCACAGATGGAAGCATGG 58.977 55.000 0.00 0.00 0.00 3.66
1004 1010 0.395311 AGCACAGATGGAAGCATGGG 60.395 55.000 0.00 0.00 0.00 4.00
1005 1011 1.389609 GCACAGATGGAAGCATGGGG 61.390 60.000 0.00 0.00 0.00 4.96
1006 1012 0.256752 CACAGATGGAAGCATGGGGA 59.743 55.000 0.00 0.00 0.00 4.81
1007 1013 0.549950 ACAGATGGAAGCATGGGGAG 59.450 55.000 0.00 0.00 0.00 4.30
1008 1014 0.178998 CAGATGGAAGCATGGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1009 1015 1.152368 GATGGAAGCATGGGGAGGG 59.848 63.158 0.00 0.00 0.00 4.30
1010 1016 1.309013 ATGGAAGCATGGGGAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
1011 1017 1.358830 ATGGAAGCATGGGGAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
1012 1018 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
1013 1019 2.614969 AAGCATGGGGAGGGAGCA 60.615 61.111 0.00 0.00 0.00 4.26
1014 1020 2.621517 GAAGCATGGGGAGGGAGCAG 62.622 65.000 0.00 0.00 0.00 4.24
1015 1021 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
1016 1022 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
1017 1023 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
1019 1025 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
1020 1026 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
1021 1027 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
1025 1031 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
1026 1032 2.505982 GAGCAGGCAAGCCGGATA 59.494 61.111 15.46 0.00 41.95 2.59
1027 1033 1.889573 GAGCAGGCAAGCCGGATAC 60.890 63.158 15.46 0.00 41.95 2.24
1028 1034 2.902343 GCAGGCAAGCCGGATACC 60.902 66.667 15.46 4.11 41.95 2.73
1029 1035 2.203209 CAGGCAAGCCGGATACCC 60.203 66.667 5.05 2.24 41.95 3.69
1030 1036 2.366972 AGGCAAGCCGGATACCCT 60.367 61.111 5.05 5.22 41.95 4.34
1031 1037 1.074775 AGGCAAGCCGGATACCCTA 60.075 57.895 5.05 0.00 41.95 3.53
1032 1038 1.070957 GGCAAGCCGGATACCCTAC 59.929 63.158 5.05 0.00 0.00 3.18
1033 1039 1.408453 GGCAAGCCGGATACCCTACT 61.408 60.000 5.05 0.00 0.00 2.57
1034 1040 0.249911 GCAAGCCGGATACCCTACTG 60.250 60.000 5.05 0.00 0.00 2.74
1035 1041 1.410004 CAAGCCGGATACCCTACTGA 58.590 55.000 5.05 0.00 0.00 3.41
1036 1042 1.760613 CAAGCCGGATACCCTACTGAA 59.239 52.381 5.05 0.00 0.00 3.02
1037 1043 2.368875 CAAGCCGGATACCCTACTGAAT 59.631 50.000 5.05 0.00 0.00 2.57
1038 1044 3.537795 AGCCGGATACCCTACTGAATA 57.462 47.619 5.05 0.00 0.00 1.75
1039 1045 3.163467 AGCCGGATACCCTACTGAATAC 58.837 50.000 5.05 0.00 0.00 1.89
1040 1046 2.233186 GCCGGATACCCTACTGAATACC 59.767 54.545 5.05 0.00 0.00 2.73
1041 1047 3.775910 CCGGATACCCTACTGAATACCT 58.224 50.000 0.00 0.00 0.00 3.08
1042 1048 3.762823 CCGGATACCCTACTGAATACCTC 59.237 52.174 0.00 0.00 0.00 3.85
1043 1049 4.508763 CCGGATACCCTACTGAATACCTCT 60.509 50.000 0.00 0.00 0.00 3.69
1044 1050 5.280882 CCGGATACCCTACTGAATACCTCTA 60.281 48.000 0.00 0.00 0.00 2.43
1045 1051 5.881443 CGGATACCCTACTGAATACCTCTAG 59.119 48.000 0.00 0.00 0.00 2.43
1046 1052 6.296317 CGGATACCCTACTGAATACCTCTAGA 60.296 46.154 0.00 0.00 0.00 2.43
1047 1053 7.468496 GGATACCCTACTGAATACCTCTAGAA 58.532 42.308 0.00 0.00 0.00 2.10
1048 1054 7.612633 GGATACCCTACTGAATACCTCTAGAAG 59.387 44.444 0.00 0.00 0.00 2.85
1065 1071 9.961264 CCTCTAGAAGGTTTAAATTCCTTAAGT 57.039 33.333 9.47 2.49 43.12 2.24
1073 1079 8.867097 AGGTTTAAATTCCTTAAGTTTTCTCCC 58.133 33.333 0.97 0.92 31.12 4.30
1074 1080 8.644216 GGTTTAAATTCCTTAAGTTTTCTCCCA 58.356 33.333 0.97 0.00 31.12 4.37
1075 1081 9.472361 GTTTAAATTCCTTAAGTTTTCTCCCAC 57.528 33.333 0.97 0.00 31.12 4.61
1076 1082 9.429109 TTTAAATTCCTTAAGTTTTCTCCCACT 57.571 29.630 0.97 0.00 31.12 4.00
1077 1083 6.901081 AATTCCTTAAGTTTTCTCCCACTG 57.099 37.500 0.97 0.00 0.00 3.66
1078 1084 5.640158 TTCCTTAAGTTTTCTCCCACTGA 57.360 39.130 0.97 0.00 0.00 3.41
1079 1085 5.640158 TCCTTAAGTTTTCTCCCACTGAA 57.360 39.130 0.97 0.00 0.00 3.02
1080 1086 6.008696 TCCTTAAGTTTTCTCCCACTGAAA 57.991 37.500 0.97 0.00 0.00 2.69
1081 1087 6.428295 TCCTTAAGTTTTCTCCCACTGAAAA 58.572 36.000 0.97 0.00 39.96 2.29
1082 1088 6.546034 TCCTTAAGTTTTCTCCCACTGAAAAG 59.454 38.462 0.97 0.00 41.96 2.27
1083 1089 6.546034 CCTTAAGTTTTCTCCCACTGAAAAGA 59.454 38.462 0.97 0.00 41.96 2.52
1084 1090 7.068226 CCTTAAGTTTTCTCCCACTGAAAAGAA 59.932 37.037 0.97 0.00 41.96 2.52
1085 1091 5.836821 AGTTTTCTCCCACTGAAAAGAAC 57.163 39.130 0.00 0.00 41.96 3.01
1086 1092 5.261216 AGTTTTCTCCCACTGAAAAGAACA 58.739 37.500 0.00 0.00 41.96 3.18
1087 1093 5.358160 AGTTTTCTCCCACTGAAAAGAACAG 59.642 40.000 0.00 0.00 41.96 3.16
1088 1094 4.771114 TTCTCCCACTGAAAAGAACAGA 57.229 40.909 0.00 0.00 38.55 3.41
1089 1095 4.342862 TCTCCCACTGAAAAGAACAGAG 57.657 45.455 0.00 0.00 38.55 3.35
1090 1096 3.967326 TCTCCCACTGAAAAGAACAGAGA 59.033 43.478 0.00 0.00 38.55 3.10
1091 1097 4.408921 TCTCCCACTGAAAAGAACAGAGAA 59.591 41.667 0.00 0.00 38.55 2.87
1092 1098 4.708177 TCCCACTGAAAAGAACAGAGAAG 58.292 43.478 0.00 0.00 38.55 2.85
1093 1099 3.817647 CCCACTGAAAAGAACAGAGAAGG 59.182 47.826 0.00 0.00 38.55 3.46
1094 1100 4.444876 CCCACTGAAAAGAACAGAGAAGGA 60.445 45.833 0.00 0.00 38.55 3.36
1095 1101 4.754114 CCACTGAAAAGAACAGAGAAGGAG 59.246 45.833 0.00 0.00 38.55 3.69
1096 1102 5.453903 CCACTGAAAAGAACAGAGAAGGAGA 60.454 44.000 0.00 0.00 38.55 3.71
1097 1103 6.229733 CACTGAAAAGAACAGAGAAGGAGAT 58.770 40.000 0.00 0.00 38.55 2.75
1098 1104 6.709846 CACTGAAAAGAACAGAGAAGGAGATT 59.290 38.462 0.00 0.00 38.55 2.40
1099 1105 7.228308 CACTGAAAAGAACAGAGAAGGAGATTT 59.772 37.037 0.00 0.00 38.55 2.17
1100 1106 7.228308 ACTGAAAAGAACAGAGAAGGAGATTTG 59.772 37.037 0.00 0.00 38.55 2.32
1101 1107 6.488006 TGAAAAGAACAGAGAAGGAGATTTGG 59.512 38.462 0.00 0.00 0.00 3.28
1102 1108 5.832539 AAGAACAGAGAAGGAGATTTGGA 57.167 39.130 0.00 0.00 0.00 3.53
1103 1109 5.419239 AGAACAGAGAAGGAGATTTGGAG 57.581 43.478 0.00 0.00 0.00 3.86
1104 1110 5.090139 AGAACAGAGAAGGAGATTTGGAGA 58.910 41.667 0.00 0.00 0.00 3.71
1105 1111 5.187576 AGAACAGAGAAGGAGATTTGGAGAG 59.812 44.000 0.00 0.00 0.00 3.20
1106 1112 4.424842 ACAGAGAAGGAGATTTGGAGAGT 58.575 43.478 0.00 0.00 0.00 3.24
1107 1113 4.222588 ACAGAGAAGGAGATTTGGAGAGTG 59.777 45.833 0.00 0.00 0.00 3.51
1108 1114 3.197549 AGAGAAGGAGATTTGGAGAGTGC 59.802 47.826 0.00 0.00 0.00 4.40
1109 1115 2.093764 AGAAGGAGATTTGGAGAGTGCG 60.094 50.000 0.00 0.00 0.00 5.34
1110 1116 1.561643 AGGAGATTTGGAGAGTGCGA 58.438 50.000 0.00 0.00 0.00 5.10
1111 1117 1.480137 AGGAGATTTGGAGAGTGCGAG 59.520 52.381 0.00 0.00 0.00 5.03
1112 1118 1.478510 GGAGATTTGGAGAGTGCGAGA 59.521 52.381 0.00 0.00 0.00 4.04
1113 1119 2.481104 GGAGATTTGGAGAGTGCGAGAG 60.481 54.545 0.00 0.00 0.00 3.20
1114 1120 2.425312 GAGATTTGGAGAGTGCGAGAGA 59.575 50.000 0.00 0.00 0.00 3.10
1115 1121 2.828520 AGATTTGGAGAGTGCGAGAGAA 59.171 45.455 0.00 0.00 0.00 2.87
1116 1122 3.259374 AGATTTGGAGAGTGCGAGAGAAA 59.741 43.478 0.00 0.00 0.00 2.52
1117 1123 3.685139 TTTGGAGAGTGCGAGAGAAAT 57.315 42.857 0.00 0.00 0.00 2.17
1118 1124 3.685139 TTGGAGAGTGCGAGAGAAATT 57.315 42.857 0.00 0.00 0.00 1.82
1119 1125 3.238108 TGGAGAGTGCGAGAGAAATTC 57.762 47.619 0.00 0.00 0.00 2.17
1120 1126 2.093973 TGGAGAGTGCGAGAGAAATTCC 60.094 50.000 0.00 0.00 0.00 3.01
1121 1127 2.093973 GGAGAGTGCGAGAGAAATTCCA 60.094 50.000 0.00 0.00 0.00 3.53
1122 1128 3.589988 GAGAGTGCGAGAGAAATTCCAA 58.410 45.455 0.00 0.00 0.00 3.53
1123 1129 3.997021 GAGAGTGCGAGAGAAATTCCAAA 59.003 43.478 0.00 0.00 0.00 3.28
1124 1130 3.748568 AGAGTGCGAGAGAAATTCCAAAC 59.251 43.478 0.00 0.00 0.00 2.93
1125 1131 3.744660 AGTGCGAGAGAAATTCCAAACT 58.255 40.909 0.00 0.00 0.00 2.66
1126 1132 3.499918 AGTGCGAGAGAAATTCCAAACTG 59.500 43.478 0.00 0.00 0.00 3.16
1127 1133 2.813754 TGCGAGAGAAATTCCAAACTGG 59.186 45.455 0.00 0.00 39.43 4.00
1128 1134 2.414691 GCGAGAGAAATTCCAAACTGGC 60.415 50.000 0.00 0.00 37.47 4.85
1129 1135 2.162408 CGAGAGAAATTCCAAACTGGCC 59.838 50.000 0.00 0.00 37.47 5.36
1130 1136 2.493675 GAGAGAAATTCCAAACTGGCCC 59.506 50.000 0.00 0.00 37.47 5.80
1131 1137 2.158325 AGAGAAATTCCAAACTGGCCCA 60.158 45.455 0.00 0.00 37.47 5.36
1132 1138 2.632512 GAGAAATTCCAAACTGGCCCAA 59.367 45.455 0.00 0.00 37.47 4.12
1133 1139 3.044894 AGAAATTCCAAACTGGCCCAAA 58.955 40.909 0.00 0.00 37.47 3.28
1134 1140 3.071457 AGAAATTCCAAACTGGCCCAAAG 59.929 43.478 0.00 0.00 37.47 2.77
1135 1141 2.101640 ATTCCAAACTGGCCCAAAGT 57.898 45.000 0.00 0.00 37.47 2.66
1136 1142 1.408969 TTCCAAACTGGCCCAAAGTC 58.591 50.000 0.00 0.00 37.47 3.01
1137 1143 0.555769 TCCAAACTGGCCCAAAGTCT 59.444 50.000 0.00 0.00 37.47 3.24
1138 1144 0.961753 CCAAACTGGCCCAAAGTCTC 59.038 55.000 0.00 0.00 0.00 3.36
1139 1145 0.593128 CAAACTGGCCCAAAGTCTCG 59.407 55.000 0.00 0.00 0.00 4.04
1140 1146 1.172812 AAACTGGCCCAAAGTCTCGC 61.173 55.000 0.00 0.00 0.00 5.03
1141 1147 3.121030 CTGGCCCAAAGTCTCGCG 61.121 66.667 0.00 0.00 0.00 5.87
1142 1148 3.589654 CTGGCCCAAAGTCTCGCGA 62.590 63.158 9.26 9.26 0.00 5.87
1143 1149 2.358247 GGCCCAAAGTCTCGCGAA 60.358 61.111 11.33 0.00 0.00 4.70
1144 1150 2.391389 GGCCCAAAGTCTCGCGAAG 61.391 63.158 11.33 4.62 0.00 3.79
1158 1164 2.093216 CGAAGCTTCACATCAGCCC 58.907 57.895 25.47 0.00 38.09 5.19
1159 1165 0.674581 CGAAGCTTCACATCAGCCCA 60.675 55.000 25.47 0.00 38.09 5.36
1160 1166 0.807496 GAAGCTTCACATCAGCCCAC 59.193 55.000 21.67 0.00 38.09 4.61
1161 1167 0.957395 AAGCTTCACATCAGCCCACG 60.957 55.000 0.00 0.00 38.09 4.94
1162 1168 1.672356 GCTTCACATCAGCCCACGT 60.672 57.895 0.00 0.00 0.00 4.49
1163 1169 0.391130 GCTTCACATCAGCCCACGTA 60.391 55.000 0.00 0.00 0.00 3.57
1164 1170 1.359848 CTTCACATCAGCCCACGTAC 58.640 55.000 0.00 0.00 0.00 3.67
1165 1171 0.389296 TTCACATCAGCCCACGTACG 60.389 55.000 15.01 15.01 0.00 3.67
1166 1172 1.809619 CACATCAGCCCACGTACGG 60.810 63.158 21.06 8.46 0.00 4.02
1167 1173 1.980232 ACATCAGCCCACGTACGGA 60.980 57.895 21.06 6.15 0.00 4.69
1168 1174 1.226974 CATCAGCCCACGTACGGAG 60.227 63.158 21.06 11.52 0.00 4.63
1169 1175 3.077519 ATCAGCCCACGTACGGAGC 62.078 63.158 21.06 18.06 0.00 4.70
1172 1178 4.849329 GCCCACGTACGGAGCGAG 62.849 72.222 21.06 3.05 0.00 5.03
1173 1179 4.849329 CCCACGTACGGAGCGAGC 62.849 72.222 21.06 0.00 0.00 5.03
1175 1181 4.156622 CACGTACGGAGCGAGCGA 62.157 66.667 21.06 0.00 33.88 4.93
1176 1182 4.157958 ACGTACGGAGCGAGCGAC 62.158 66.667 21.06 0.00 33.88 5.19
1177 1183 4.883300 CGTACGGAGCGAGCGACC 62.883 72.222 7.57 4.78 32.33 4.79
1194 1200 2.478746 CGACGCGGGTTGGAATTG 59.521 61.111 12.47 0.00 0.00 2.32
1195 1201 2.874751 GACGCGGGTTGGAATTGG 59.125 61.111 12.47 0.00 0.00 3.16
1196 1202 1.969589 GACGCGGGTTGGAATTGGT 60.970 57.895 12.47 0.00 0.00 3.67
1197 1203 1.520600 GACGCGGGTTGGAATTGGTT 61.521 55.000 12.47 0.00 0.00 3.67
1198 1204 1.080839 CGCGGGTTGGAATTGGTTG 60.081 57.895 0.00 0.00 0.00 3.77
1199 1205 1.374125 GCGGGTTGGAATTGGTTGC 60.374 57.895 0.00 0.00 0.00 4.17
1200 1206 1.291906 CGGGTTGGAATTGGTTGCC 59.708 57.895 0.00 0.00 0.00 4.52
1201 1207 1.676968 GGGTTGGAATTGGTTGCCC 59.323 57.895 0.00 0.00 0.00 5.36
1202 1208 0.835971 GGGTTGGAATTGGTTGCCCT 60.836 55.000 0.00 0.00 0.00 5.19
1203 1209 0.321346 GGTTGGAATTGGTTGCCCTG 59.679 55.000 0.00 0.00 0.00 4.45
1204 1210 1.337118 GTTGGAATTGGTTGCCCTGA 58.663 50.000 0.00 0.00 0.00 3.86
1205 1211 1.691434 GTTGGAATTGGTTGCCCTGAA 59.309 47.619 0.00 0.00 0.00 3.02
1206 1212 1.337118 TGGAATTGGTTGCCCTGAAC 58.663 50.000 0.00 0.00 0.00 3.18
1207 1213 1.133199 TGGAATTGGTTGCCCTGAACT 60.133 47.619 0.00 0.00 0.00 3.01
1208 1214 2.109128 TGGAATTGGTTGCCCTGAACTA 59.891 45.455 0.00 0.00 0.00 2.24
1209 1215 2.492088 GGAATTGGTTGCCCTGAACTAC 59.508 50.000 0.00 0.00 0.00 2.73
1210 1216 2.969821 ATTGGTTGCCCTGAACTACA 57.030 45.000 0.00 0.00 0.00 2.74
1211 1217 2.738587 TTGGTTGCCCTGAACTACAA 57.261 45.000 0.00 0.00 0.00 2.41
1212 1218 1.975660 TGGTTGCCCTGAACTACAAC 58.024 50.000 0.00 0.00 41.26 3.32
1214 1220 1.975660 GTTGCCCTGAACTACAACCA 58.024 50.000 0.00 0.00 37.11 3.67
1215 1221 2.303175 GTTGCCCTGAACTACAACCAA 58.697 47.619 0.00 0.00 37.11 3.67
1216 1222 2.890945 GTTGCCCTGAACTACAACCAAT 59.109 45.455 0.00 0.00 37.11 3.16
1217 1223 3.237268 TGCCCTGAACTACAACCAATT 57.763 42.857 0.00 0.00 0.00 2.32
1218 1224 2.890311 TGCCCTGAACTACAACCAATTG 59.110 45.455 0.00 0.00 41.98 2.32
2266 2272 2.915604 AGTTCCCAGTGAAGGATGATGT 59.084 45.455 0.00 0.00 32.37 3.06
2397 2403 2.441750 AGGGTGCCAAAGTACTCTTCAA 59.558 45.455 0.00 0.00 35.65 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.181469 TGTTTGTTACGCCTGACTCTCTT 60.181 43.478 0.00 0.00 0.00 2.85
92 95 0.249405 ACAGGCATGGCGTTTGTTTG 60.249 50.000 14.30 7.23 0.00 2.93
93 96 0.031994 GACAGGCATGGCGTTTGTTT 59.968 50.000 14.30 0.00 0.00 2.83
124 127 4.823989 AGATCTTGAGTTGTTCAACCTTGG 59.176 41.667 11.38 2.27 40.82 3.61
148 151 2.496470 AGTACGGAGGACTTGGATTCAC 59.504 50.000 0.00 0.00 0.00 3.18
216 219 2.653115 GGCAGCAAAGAGGGCAAC 59.347 61.111 0.00 0.00 0.00 4.17
461 467 9.193133 CTGAAACTCTTAACGAAAAGTATCTGA 57.807 33.333 0.00 0.00 0.00 3.27
720 726 1.291877 ATCAGTCGTCGCAAGTTGGC 61.292 55.000 4.75 0.00 39.48 4.52
765 771 0.902984 TCTTGTTAGCAGCGGAGGGA 60.903 55.000 0.00 0.00 0.00 4.20
818 824 1.294659 GGAGCAGGCAAGTCTTGTCG 61.295 60.000 14.03 9.10 41.01 4.35
819 825 0.957888 GGGAGCAGGCAAGTCTTGTC 60.958 60.000 9.25 9.25 34.90 3.18
820 826 1.073897 GGGAGCAGGCAAGTCTTGT 59.926 57.895 14.03 0.00 0.00 3.16
821 827 0.251077 AAGGGAGCAGGCAAGTCTTG 60.251 55.000 8.31 8.31 0.00 3.02
822 828 1.280421 CTAAGGGAGCAGGCAAGTCTT 59.720 52.381 0.00 0.00 0.00 3.01
823 829 0.908198 CTAAGGGAGCAGGCAAGTCT 59.092 55.000 0.00 0.00 0.00 3.24
824 830 3.467776 CTAAGGGAGCAGGCAAGTC 57.532 57.895 0.00 0.00 0.00 3.01
834 840 2.088674 ATAGGCGCACGCTAAGGGAG 62.089 60.000 15.36 0.00 41.60 4.30
835 841 2.083835 GATAGGCGCACGCTAAGGGA 62.084 60.000 15.36 0.00 41.60 4.20
836 842 1.664965 GATAGGCGCACGCTAAGGG 60.665 63.158 15.36 0.00 41.60 3.95
837 843 1.664965 GGATAGGCGCACGCTAAGG 60.665 63.158 15.36 0.00 41.60 2.69
838 844 2.016704 CGGATAGGCGCACGCTAAG 61.017 63.158 15.36 0.00 41.60 2.18
839 845 2.027024 CGGATAGGCGCACGCTAA 59.973 61.111 15.36 3.68 41.60 3.09
840 846 3.214123 ACGGATAGGCGCACGCTA 61.214 61.111 15.36 1.27 41.60 4.26
841 847 4.873129 CACGGATAGGCGCACGCT 62.873 66.667 15.36 0.00 41.60 5.07
843 849 4.873129 AGCACGGATAGGCGCACG 62.873 66.667 10.83 7.96 34.54 5.34
844 850 2.962253 GAGCACGGATAGGCGCAC 60.962 66.667 10.83 0.00 34.54 5.34
845 851 4.221422 GGAGCACGGATAGGCGCA 62.221 66.667 10.83 0.00 34.54 6.09
846 852 4.971125 GGGAGCACGGATAGGCGC 62.971 72.222 0.00 0.00 34.54 6.53
847 853 4.647615 CGGGAGCACGGATAGGCG 62.648 72.222 0.00 0.00 34.54 5.52
859 865 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
860 866 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
861 867 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
862 868 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
863 869 1.330213 TGAAATCATGCCACGTATGCG 59.670 47.619 0.19 0.19 44.93 4.73
864 870 3.631145 ATGAAATCATGCCACGTATGC 57.369 42.857 2.46 2.46 34.83 3.14
865 871 6.544038 TCTAATGAAATCATGCCACGTATG 57.456 37.500 0.00 0.00 36.56 2.39
866 872 7.750229 ATTCTAATGAAATCATGCCACGTAT 57.250 32.000 0.00 0.00 36.56 3.06
867 873 8.669946 TTATTCTAATGAAATCATGCCACGTA 57.330 30.769 0.00 0.00 36.56 3.57
868 874 7.566760 TTATTCTAATGAAATCATGCCACGT 57.433 32.000 0.00 0.00 36.56 4.49
869 875 8.131100 ACTTTATTCTAATGAAATCATGCCACG 58.869 33.333 0.00 0.00 36.56 4.94
879 885 9.174166 GCTGGACCTTACTTTATTCTAATGAAA 57.826 33.333 0.00 0.00 35.63 2.69
880 886 7.773690 GGCTGGACCTTACTTTATTCTAATGAA 59.226 37.037 0.00 0.00 34.08 2.57
881 887 7.280356 GGCTGGACCTTACTTTATTCTAATGA 58.720 38.462 0.00 0.00 34.51 2.57
882 888 6.486993 GGGCTGGACCTTACTTTATTCTAATG 59.513 42.308 0.00 0.00 39.10 1.90
883 889 6.410504 GGGGCTGGACCTTACTTTATTCTAAT 60.411 42.308 0.00 0.00 39.10 1.73
884 890 5.104235 GGGGCTGGACCTTACTTTATTCTAA 60.104 44.000 0.00 0.00 39.10 2.10
885 891 4.411212 GGGGCTGGACCTTACTTTATTCTA 59.589 45.833 0.00 0.00 39.10 2.10
886 892 3.202373 GGGGCTGGACCTTACTTTATTCT 59.798 47.826 0.00 0.00 39.10 2.40
887 893 3.053917 TGGGGCTGGACCTTACTTTATTC 60.054 47.826 0.00 0.00 39.10 1.75
888 894 2.923629 TGGGGCTGGACCTTACTTTATT 59.076 45.455 0.00 0.00 39.10 1.40
889 895 2.241430 GTGGGGCTGGACCTTACTTTAT 59.759 50.000 0.00 0.00 39.10 1.40
890 896 1.631898 GTGGGGCTGGACCTTACTTTA 59.368 52.381 0.00 0.00 39.10 1.85
891 897 0.404426 GTGGGGCTGGACCTTACTTT 59.596 55.000 0.00 0.00 39.10 2.66
892 898 1.498176 GGTGGGGCTGGACCTTACTT 61.498 60.000 0.00 0.00 39.10 2.24
893 899 1.923909 GGTGGGGCTGGACCTTACT 60.924 63.158 0.00 0.00 39.10 2.24
894 900 2.675371 GGTGGGGCTGGACCTTAC 59.325 66.667 0.00 0.00 39.10 2.34
895 901 2.612746 GGGTGGGGCTGGACCTTA 60.613 66.667 0.00 0.00 39.10 2.69
896 902 4.617595 AGGGTGGGGCTGGACCTT 62.618 66.667 0.00 0.00 39.10 3.50
899 905 1.205460 TTAAGAGGGTGGGGCTGGAC 61.205 60.000 0.00 0.00 0.00 4.02
900 906 0.476808 TTTAAGAGGGTGGGGCTGGA 60.477 55.000 0.00 0.00 0.00 3.86
901 907 0.407918 TTTTAAGAGGGTGGGGCTGG 59.592 55.000 0.00 0.00 0.00 4.85
902 908 2.291540 TGATTTTAAGAGGGTGGGGCTG 60.292 50.000 0.00 0.00 0.00 4.85
903 909 2.000048 TGATTTTAAGAGGGTGGGGCT 59.000 47.619 0.00 0.00 0.00 5.19
904 910 2.379005 CTGATTTTAAGAGGGTGGGGC 58.621 52.381 0.00 0.00 0.00 5.80
905 911 2.358195 CCCTGATTTTAAGAGGGTGGGG 60.358 54.545 0.00 0.00 41.58 4.96
906 912 2.358195 CCCCTGATTTTAAGAGGGTGGG 60.358 54.545 0.00 0.00 44.63 4.61
907 913 2.358195 CCCCCTGATTTTAAGAGGGTGG 60.358 54.545 0.00 0.00 44.63 4.61
908 914 3.018423 CCCCCTGATTTTAAGAGGGTG 57.982 52.381 0.00 0.00 44.63 4.61
925 931 7.978925 TCTTTCTAATCTAATCATCTTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
926 932 9.853177 TTTCTTTCTAATCTAATCATCTTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
944 950 8.178313 CGACTGTCTTTTTCTCTTTTTCTTTCT 58.822 33.333 6.21 0.00 0.00 2.52
945 951 7.963465 ACGACTGTCTTTTTCTCTTTTTCTTTC 59.037 33.333 6.21 0.00 0.00 2.62
946 952 7.750903 CACGACTGTCTTTTTCTCTTTTTCTTT 59.249 33.333 6.21 0.00 0.00 2.52
947 953 7.244192 CACGACTGTCTTTTTCTCTTTTTCTT 58.756 34.615 6.21 0.00 0.00 2.52
948 954 6.183360 CCACGACTGTCTTTTTCTCTTTTTCT 60.183 38.462 6.21 0.00 0.00 2.52
949 955 5.965918 CCACGACTGTCTTTTTCTCTTTTTC 59.034 40.000 6.21 0.00 0.00 2.29
950 956 5.163652 CCCACGACTGTCTTTTTCTCTTTTT 60.164 40.000 6.21 0.00 0.00 1.94
951 957 4.335594 CCCACGACTGTCTTTTTCTCTTTT 59.664 41.667 6.21 0.00 0.00 2.27
952 958 3.877508 CCCACGACTGTCTTTTTCTCTTT 59.122 43.478 6.21 0.00 0.00 2.52
953 959 3.134081 TCCCACGACTGTCTTTTTCTCTT 59.866 43.478 6.21 0.00 0.00 2.85
954 960 2.698797 TCCCACGACTGTCTTTTTCTCT 59.301 45.455 6.21 0.00 0.00 3.10
955 961 3.107642 TCCCACGACTGTCTTTTTCTC 57.892 47.619 6.21 0.00 0.00 2.87
956 962 3.771577 ATCCCACGACTGTCTTTTTCT 57.228 42.857 6.21 0.00 0.00 2.52
957 963 5.469084 ACTTTATCCCACGACTGTCTTTTTC 59.531 40.000 6.21 0.00 0.00 2.29
958 964 5.238650 CACTTTATCCCACGACTGTCTTTTT 59.761 40.000 6.21 0.00 0.00 1.94
959 965 4.755123 CACTTTATCCCACGACTGTCTTTT 59.245 41.667 6.21 0.00 0.00 2.27
960 966 4.039973 TCACTTTATCCCACGACTGTCTTT 59.960 41.667 6.21 0.00 0.00 2.52
961 967 3.576982 TCACTTTATCCCACGACTGTCTT 59.423 43.478 6.21 0.00 0.00 3.01
962 968 3.162666 TCACTTTATCCCACGACTGTCT 58.837 45.455 6.21 0.00 0.00 3.41
963 969 3.192844 TCTCACTTTATCCCACGACTGTC 59.807 47.826 0.00 0.00 0.00 3.51
964 970 3.162666 TCTCACTTTATCCCACGACTGT 58.837 45.455 0.00 0.00 0.00 3.55
965 971 3.775202 CTCTCACTTTATCCCACGACTG 58.225 50.000 0.00 0.00 0.00 3.51
966 972 2.166664 GCTCTCACTTTATCCCACGACT 59.833 50.000 0.00 0.00 0.00 4.18
967 973 2.094182 TGCTCTCACTTTATCCCACGAC 60.094 50.000 0.00 0.00 0.00 4.34
968 974 2.094182 GTGCTCTCACTTTATCCCACGA 60.094 50.000 0.00 0.00 40.03 4.35
969 975 2.271800 GTGCTCTCACTTTATCCCACG 58.728 52.381 0.00 0.00 40.03 4.94
970 976 3.055819 TCTGTGCTCTCACTTTATCCCAC 60.056 47.826 0.00 0.00 43.49 4.61
971 977 3.173151 TCTGTGCTCTCACTTTATCCCA 58.827 45.455 0.00 0.00 43.49 4.37
972 978 3.895232 TCTGTGCTCTCACTTTATCCC 57.105 47.619 0.00 0.00 43.49 3.85
973 979 4.125703 CCATCTGTGCTCTCACTTTATCC 58.874 47.826 0.00 0.00 43.49 2.59
974 980 5.016051 TCCATCTGTGCTCTCACTTTATC 57.984 43.478 0.00 0.00 43.49 1.75
975 981 5.426504 CTTCCATCTGTGCTCTCACTTTAT 58.573 41.667 0.00 0.00 43.49 1.40
976 982 4.825422 CTTCCATCTGTGCTCTCACTTTA 58.175 43.478 0.00 0.00 43.49 1.85
977 983 3.672808 CTTCCATCTGTGCTCTCACTTT 58.327 45.455 0.00 0.00 43.49 2.66
978 984 2.614987 GCTTCCATCTGTGCTCTCACTT 60.615 50.000 0.00 0.00 43.49 3.16
979 985 1.066286 GCTTCCATCTGTGCTCTCACT 60.066 52.381 0.00 0.00 43.49 3.41
980 986 1.338484 TGCTTCCATCTGTGCTCTCAC 60.338 52.381 0.00 0.00 43.40 3.51
981 987 0.978907 TGCTTCCATCTGTGCTCTCA 59.021 50.000 0.00 0.00 0.00 3.27
982 988 1.941294 CATGCTTCCATCTGTGCTCTC 59.059 52.381 0.00 0.00 0.00 3.20
983 989 1.408405 CCATGCTTCCATCTGTGCTCT 60.408 52.381 0.00 0.00 0.00 4.09
984 990 1.022735 CCATGCTTCCATCTGTGCTC 58.977 55.000 0.00 0.00 0.00 4.26
985 991 0.395311 CCCATGCTTCCATCTGTGCT 60.395 55.000 0.00 0.00 0.00 4.40
986 992 1.389609 CCCCATGCTTCCATCTGTGC 61.390 60.000 0.00 0.00 0.00 4.57
987 993 0.256752 TCCCCATGCTTCCATCTGTG 59.743 55.000 0.00 0.00 0.00 3.66
988 994 0.549950 CTCCCCATGCTTCCATCTGT 59.450 55.000 0.00 0.00 0.00 3.41
989 995 0.178998 CCTCCCCATGCTTCCATCTG 60.179 60.000 0.00 0.00 0.00 2.90
990 996 1.358830 CCCTCCCCATGCTTCCATCT 61.359 60.000 0.00 0.00 0.00 2.90
991 997 1.152368 CCCTCCCCATGCTTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
992 998 1.309013 TCCCTCCCCATGCTTCCAT 60.309 57.895 0.00 0.00 0.00 3.41
993 999 2.002977 CTCCCTCCCCATGCTTCCA 61.003 63.158 0.00 0.00 0.00 3.53
994 1000 2.922234 CTCCCTCCCCATGCTTCC 59.078 66.667 0.00 0.00 0.00 3.46
995 1001 2.194326 GCTCCCTCCCCATGCTTC 59.806 66.667 0.00 0.00 0.00 3.86
996 1002 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
997 1003 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
998 1004 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
999 1005 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
1000 1006 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
1002 1008 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
1003 1009 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
1004 1010 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
1008 1014 3.106986 TATCCGGCTTGCCTGCTCC 62.107 63.158 10.12 0.00 0.00 4.70
1009 1015 1.889573 GTATCCGGCTTGCCTGCTC 60.890 63.158 10.12 0.00 0.00 4.26
1010 1016 2.190578 GTATCCGGCTTGCCTGCT 59.809 61.111 10.12 0.00 0.00 4.24
1011 1017 2.902343 GGTATCCGGCTTGCCTGC 60.902 66.667 10.12 0.00 0.00 4.85
1012 1018 1.407656 TAGGGTATCCGGCTTGCCTG 61.408 60.000 10.12 3.29 38.33 4.85
1013 1019 1.074775 TAGGGTATCCGGCTTGCCT 60.075 57.895 10.12 0.00 38.33 4.75
1014 1020 1.070957 GTAGGGTATCCGGCTTGCC 59.929 63.158 0.00 0.75 38.33 4.52
1015 1021 0.249911 CAGTAGGGTATCCGGCTTGC 60.250 60.000 0.00 0.00 38.33 4.01
1016 1022 1.410004 TCAGTAGGGTATCCGGCTTG 58.590 55.000 0.00 0.00 38.33 4.01
1017 1023 2.170012 TTCAGTAGGGTATCCGGCTT 57.830 50.000 0.00 0.00 38.33 4.35
1018 1024 2.400467 ATTCAGTAGGGTATCCGGCT 57.600 50.000 0.00 0.00 38.33 5.52
1019 1025 2.233186 GGTATTCAGTAGGGTATCCGGC 59.767 54.545 0.00 0.00 38.33 6.13
1020 1026 3.762823 GAGGTATTCAGTAGGGTATCCGG 59.237 52.174 0.00 0.00 38.33 5.14
1021 1027 4.664392 AGAGGTATTCAGTAGGGTATCCG 58.336 47.826 0.00 0.00 38.33 4.18
1022 1028 7.030234 TCTAGAGGTATTCAGTAGGGTATCC 57.970 44.000 0.00 0.00 0.00 2.59
1023 1029 7.612633 CCTTCTAGAGGTATTCAGTAGGGTATC 59.387 44.444 0.71 0.00 40.95 2.24
1024 1030 7.471890 CCTTCTAGAGGTATTCAGTAGGGTAT 58.528 42.308 0.71 0.00 40.95 2.73
1025 1031 6.850234 CCTTCTAGAGGTATTCAGTAGGGTA 58.150 44.000 0.71 0.00 40.95 3.69
1026 1032 5.707495 CCTTCTAGAGGTATTCAGTAGGGT 58.293 45.833 0.71 0.00 40.95 4.34
1047 1053 8.867097 GGGAGAAAACTTAAGGAATTTAAACCT 58.133 33.333 7.53 0.00 38.23 3.50
1048 1054 8.644216 TGGGAGAAAACTTAAGGAATTTAAACC 58.356 33.333 7.53 8.15 31.12 3.27
1049 1055 9.472361 GTGGGAGAAAACTTAAGGAATTTAAAC 57.528 33.333 7.53 1.66 31.12 2.01
1050 1056 9.429109 AGTGGGAGAAAACTTAAGGAATTTAAA 57.571 29.630 7.53 0.00 31.12 1.52
1051 1057 8.856103 CAGTGGGAGAAAACTTAAGGAATTTAA 58.144 33.333 7.53 0.00 0.00 1.52
1052 1058 8.221944 TCAGTGGGAGAAAACTTAAGGAATTTA 58.778 33.333 7.53 0.00 0.00 1.40
1053 1059 7.066781 TCAGTGGGAGAAAACTTAAGGAATTT 58.933 34.615 7.53 5.26 0.00 1.82
1054 1060 6.610830 TCAGTGGGAGAAAACTTAAGGAATT 58.389 36.000 7.53 0.00 0.00 2.17
1055 1061 6.200878 TCAGTGGGAGAAAACTTAAGGAAT 57.799 37.500 7.53 0.00 0.00 3.01
1056 1062 5.640158 TCAGTGGGAGAAAACTTAAGGAA 57.360 39.130 7.53 0.00 0.00 3.36
1057 1063 5.640158 TTCAGTGGGAGAAAACTTAAGGA 57.360 39.130 7.53 0.00 0.00 3.36
1058 1064 6.546034 TCTTTTCAGTGGGAGAAAACTTAAGG 59.454 38.462 7.53 0.00 39.34 2.69
1059 1065 7.568199 TCTTTTCAGTGGGAGAAAACTTAAG 57.432 36.000 0.00 0.00 39.34 1.85
1060 1066 7.394923 TGTTCTTTTCAGTGGGAGAAAACTTAA 59.605 33.333 0.00 0.00 39.34 1.85
1061 1067 6.887545 TGTTCTTTTCAGTGGGAGAAAACTTA 59.112 34.615 0.00 0.00 39.34 2.24
1062 1068 5.714806 TGTTCTTTTCAGTGGGAGAAAACTT 59.285 36.000 0.00 0.00 39.34 2.66
1063 1069 5.261216 TGTTCTTTTCAGTGGGAGAAAACT 58.739 37.500 0.00 0.00 39.34 2.66
1064 1070 5.357032 TCTGTTCTTTTCAGTGGGAGAAAAC 59.643 40.000 0.00 0.00 39.34 2.43
1065 1071 5.505780 TCTGTTCTTTTCAGTGGGAGAAAA 58.494 37.500 0.00 0.00 41.27 2.29
1066 1072 5.104527 TCTCTGTTCTTTTCAGTGGGAGAAA 60.105 40.000 5.66 0.00 34.86 2.52
1067 1073 4.408921 TCTCTGTTCTTTTCAGTGGGAGAA 59.591 41.667 0.00 0.00 34.86 2.87
1068 1074 3.967326 TCTCTGTTCTTTTCAGTGGGAGA 59.033 43.478 0.00 0.00 34.86 3.71
1069 1075 4.342862 TCTCTGTTCTTTTCAGTGGGAG 57.657 45.455 0.00 0.00 34.86 4.30
1070 1076 4.444876 CCTTCTCTGTTCTTTTCAGTGGGA 60.445 45.833 0.00 0.00 34.86 4.37
1071 1077 3.817647 CCTTCTCTGTTCTTTTCAGTGGG 59.182 47.826 0.00 0.00 34.86 4.61
1072 1078 4.708177 TCCTTCTCTGTTCTTTTCAGTGG 58.292 43.478 0.00 0.00 34.86 4.00
1073 1079 5.605534 TCTCCTTCTCTGTTCTTTTCAGTG 58.394 41.667 0.00 0.00 34.86 3.66
1074 1080 5.878406 TCTCCTTCTCTGTTCTTTTCAGT 57.122 39.130 0.00 0.00 34.86 3.41
1075 1081 7.308469 CCAAATCTCCTTCTCTGTTCTTTTCAG 60.308 40.741 0.00 0.00 0.00 3.02
1076 1082 6.488006 CCAAATCTCCTTCTCTGTTCTTTTCA 59.512 38.462 0.00 0.00 0.00 2.69
1077 1083 6.712547 TCCAAATCTCCTTCTCTGTTCTTTTC 59.287 38.462 0.00 0.00 0.00 2.29
1078 1084 6.605119 TCCAAATCTCCTTCTCTGTTCTTTT 58.395 36.000 0.00 0.00 0.00 2.27
1079 1085 6.043706 TCTCCAAATCTCCTTCTCTGTTCTTT 59.956 38.462 0.00 0.00 0.00 2.52
1080 1086 5.545723 TCTCCAAATCTCCTTCTCTGTTCTT 59.454 40.000 0.00 0.00 0.00 2.52
1081 1087 5.090139 TCTCCAAATCTCCTTCTCTGTTCT 58.910 41.667 0.00 0.00 0.00 3.01
1082 1088 5.046663 ACTCTCCAAATCTCCTTCTCTGTTC 60.047 44.000 0.00 0.00 0.00 3.18
1083 1089 4.843516 ACTCTCCAAATCTCCTTCTCTGTT 59.156 41.667 0.00 0.00 0.00 3.16
1084 1090 4.222588 CACTCTCCAAATCTCCTTCTCTGT 59.777 45.833 0.00 0.00 0.00 3.41
1085 1091 4.757594 CACTCTCCAAATCTCCTTCTCTG 58.242 47.826 0.00 0.00 0.00 3.35
1086 1092 3.197549 GCACTCTCCAAATCTCCTTCTCT 59.802 47.826 0.00 0.00 0.00 3.10
1087 1093 3.530535 GCACTCTCCAAATCTCCTTCTC 58.469 50.000 0.00 0.00 0.00 2.87
1088 1094 2.093764 CGCACTCTCCAAATCTCCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
1089 1095 2.093973 TCGCACTCTCCAAATCTCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
1090 1096 1.902508 TCGCACTCTCCAAATCTCCTT 59.097 47.619 0.00 0.00 0.00 3.36
1091 1097 1.480137 CTCGCACTCTCCAAATCTCCT 59.520 52.381 0.00 0.00 0.00 3.69
1092 1098 1.478510 TCTCGCACTCTCCAAATCTCC 59.521 52.381 0.00 0.00 0.00 3.71
1093 1099 2.425312 TCTCTCGCACTCTCCAAATCTC 59.575 50.000 0.00 0.00 0.00 2.75
1094 1100 2.451490 TCTCTCGCACTCTCCAAATCT 58.549 47.619 0.00 0.00 0.00 2.40
1095 1101 2.949451 TCTCTCGCACTCTCCAAATC 57.051 50.000 0.00 0.00 0.00 2.17
1096 1102 3.685139 TTTCTCTCGCACTCTCCAAAT 57.315 42.857 0.00 0.00 0.00 2.32
1097 1103 3.685139 ATTTCTCTCGCACTCTCCAAA 57.315 42.857 0.00 0.00 0.00 3.28
1098 1104 3.589988 GAATTTCTCTCGCACTCTCCAA 58.410 45.455 0.00 0.00 0.00 3.53
1099 1105 2.093973 GGAATTTCTCTCGCACTCTCCA 60.094 50.000 0.00 0.00 0.00 3.86
1100 1106 2.093973 TGGAATTTCTCTCGCACTCTCC 60.094 50.000 0.00 0.00 0.00 3.71
1101 1107 3.238108 TGGAATTTCTCTCGCACTCTC 57.762 47.619 0.00 0.00 0.00 3.20
1102 1108 3.685139 TTGGAATTTCTCTCGCACTCT 57.315 42.857 0.00 0.00 0.00 3.24
1103 1109 3.748568 AGTTTGGAATTTCTCTCGCACTC 59.251 43.478 0.00 0.00 0.00 3.51
1104 1110 3.499918 CAGTTTGGAATTTCTCTCGCACT 59.500 43.478 0.00 0.00 0.00 4.40
1105 1111 3.365364 CCAGTTTGGAATTTCTCTCGCAC 60.365 47.826 0.00 0.00 40.96 5.34
1106 1112 2.813754 CCAGTTTGGAATTTCTCTCGCA 59.186 45.455 0.00 0.00 40.96 5.10
1107 1113 2.414691 GCCAGTTTGGAATTTCTCTCGC 60.415 50.000 0.00 0.00 40.96 5.03
1108 1114 2.162408 GGCCAGTTTGGAATTTCTCTCG 59.838 50.000 0.00 0.00 40.96 4.04
1109 1115 2.493675 GGGCCAGTTTGGAATTTCTCTC 59.506 50.000 4.39 0.00 40.96 3.20
1110 1116 2.158325 TGGGCCAGTTTGGAATTTCTCT 60.158 45.455 0.00 0.00 40.96 3.10
1111 1117 2.247358 TGGGCCAGTTTGGAATTTCTC 58.753 47.619 0.00 0.00 40.96 2.87
1112 1118 2.397044 TGGGCCAGTTTGGAATTTCT 57.603 45.000 0.00 0.00 40.96 2.52
1113 1119 3.181455 ACTTTGGGCCAGTTTGGAATTTC 60.181 43.478 6.23 0.00 40.96 2.17
1114 1120 2.777114 ACTTTGGGCCAGTTTGGAATTT 59.223 40.909 6.23 0.00 40.96 1.82
1115 1121 2.368548 GACTTTGGGCCAGTTTGGAATT 59.631 45.455 6.23 0.00 40.96 2.17
1116 1122 1.970640 GACTTTGGGCCAGTTTGGAAT 59.029 47.619 6.23 0.00 40.96 3.01
1117 1123 1.063266 AGACTTTGGGCCAGTTTGGAA 60.063 47.619 6.23 0.00 40.96 3.53
1118 1124 0.555769 AGACTTTGGGCCAGTTTGGA 59.444 50.000 6.23 0.00 40.96 3.53
1119 1125 0.961753 GAGACTTTGGGCCAGTTTGG 59.038 55.000 6.23 0.00 41.55 3.28
1120 1126 0.593128 CGAGACTTTGGGCCAGTTTG 59.407 55.000 6.23 0.77 0.00 2.93
1121 1127 1.172812 GCGAGACTTTGGGCCAGTTT 61.173 55.000 6.23 0.00 0.00 2.66
1122 1128 1.600916 GCGAGACTTTGGGCCAGTT 60.601 57.895 6.23 0.00 0.00 3.16
1123 1129 2.032681 GCGAGACTTTGGGCCAGT 59.967 61.111 6.23 1.15 0.00 4.00
1124 1130 3.121030 CGCGAGACTTTGGGCCAG 61.121 66.667 6.23 0.00 0.00 4.85
1125 1131 3.171828 TTCGCGAGACTTTGGGCCA 62.172 57.895 9.59 0.00 41.84 5.36
1126 1132 2.358247 TTCGCGAGACTTTGGGCC 60.358 61.111 9.59 0.00 41.84 5.80
1127 1133 3.028366 GCTTCGCGAGACTTTGGGC 62.028 63.158 9.59 1.59 41.84 5.36
1128 1134 0.951040 AAGCTTCGCGAGACTTTGGG 60.951 55.000 17.06 1.36 41.84 4.12
1129 1135 0.440371 GAAGCTTCGCGAGACTTTGG 59.560 55.000 21.79 5.47 41.84 3.28
1130 1136 1.136502 GTGAAGCTTCGCGAGACTTTG 60.137 52.381 23.20 6.95 41.84 2.77
1131 1137 1.140816 GTGAAGCTTCGCGAGACTTT 58.859 50.000 23.20 10.95 41.84 2.66
1132 1138 0.032130 TGTGAAGCTTCGCGAGACTT 59.968 50.000 29.40 21.25 41.84 3.01
1133 1139 0.244994 ATGTGAAGCTTCGCGAGACT 59.755 50.000 29.40 8.14 41.84 3.24
1134 1140 0.642800 GATGTGAAGCTTCGCGAGAC 59.357 55.000 29.40 18.43 41.84 3.36
1135 1141 0.243636 TGATGTGAAGCTTCGCGAGA 59.756 50.000 29.40 16.44 40.46 4.04
1136 1142 0.644331 CTGATGTGAAGCTTCGCGAG 59.356 55.000 29.40 21.75 40.46 5.03
1137 1143 1.354337 GCTGATGTGAAGCTTCGCGA 61.354 55.000 29.40 20.56 40.46 5.87
1138 1144 1.059994 GCTGATGTGAAGCTTCGCG 59.940 57.895 29.40 18.63 40.46 5.87
1139 1145 1.427020 GGCTGATGTGAAGCTTCGC 59.573 57.895 29.02 29.02 40.64 4.70
1140 1146 0.674581 TGGGCTGATGTGAAGCTTCG 60.675 55.000 21.11 7.16 40.64 3.79
1141 1147 0.807496 GTGGGCTGATGTGAAGCTTC 59.193 55.000 19.89 19.89 40.64 3.86
1142 1148 0.957395 CGTGGGCTGATGTGAAGCTT 60.957 55.000 0.00 0.00 40.64 3.74
1143 1149 1.376424 CGTGGGCTGATGTGAAGCT 60.376 57.895 0.00 0.00 40.64 3.74
1144 1150 0.391130 TACGTGGGCTGATGTGAAGC 60.391 55.000 0.00 0.00 40.06 3.86
1145 1151 1.359848 GTACGTGGGCTGATGTGAAG 58.640 55.000 0.00 0.00 0.00 3.02
1146 1152 0.389296 CGTACGTGGGCTGATGTGAA 60.389 55.000 7.22 0.00 0.00 3.18
1147 1153 1.214325 CGTACGTGGGCTGATGTGA 59.786 57.895 7.22 0.00 0.00 3.58
1148 1154 1.809619 CCGTACGTGGGCTGATGTG 60.810 63.158 15.21 0.00 0.00 3.21
1149 1155 1.945354 CTCCGTACGTGGGCTGATGT 61.945 60.000 15.21 0.00 0.00 3.06
1150 1156 1.226974 CTCCGTACGTGGGCTGATG 60.227 63.158 15.21 0.00 0.00 3.07
1151 1157 3.077519 GCTCCGTACGTGGGCTGAT 62.078 63.158 17.86 0.00 0.00 2.90
1152 1158 3.755628 GCTCCGTACGTGGGCTGA 61.756 66.667 17.86 5.60 0.00 4.26
1155 1161 4.849329 CTCGCTCCGTACGTGGGC 62.849 72.222 15.21 15.61 0.00 5.36
1156 1162 4.849329 GCTCGCTCCGTACGTGGG 62.849 72.222 15.21 14.25 0.00 4.61
1158 1164 4.156622 TCGCTCGCTCCGTACGTG 62.157 66.667 15.21 7.80 0.00 4.49
1159 1165 4.157958 GTCGCTCGCTCCGTACGT 62.158 66.667 15.21 0.00 0.00 3.57
1160 1166 4.883300 GGTCGCTCGCTCCGTACG 62.883 72.222 8.69 8.69 0.00 3.67
1161 1167 4.883300 CGGTCGCTCGCTCCGTAC 62.883 72.222 13.93 0.00 39.51 3.67
1174 1180 3.945304 ATTCCAACCCGCGTCGGTC 62.945 63.158 15.38 0.00 46.80 4.79
1175 1181 3.540367 AATTCCAACCCGCGTCGGT 62.540 57.895 15.38 2.60 46.80 4.69
1177 1183 2.478746 CAATTCCAACCCGCGTCG 59.521 61.111 4.92 0.00 0.00 5.12
1178 1184 1.520600 AACCAATTCCAACCCGCGTC 61.521 55.000 4.92 0.00 0.00 5.19
1179 1185 1.529713 AACCAATTCCAACCCGCGT 60.530 52.632 4.92 0.00 0.00 6.01
1180 1186 1.080839 CAACCAATTCCAACCCGCG 60.081 57.895 0.00 0.00 0.00 6.46
1181 1187 1.374125 GCAACCAATTCCAACCCGC 60.374 57.895 0.00 0.00 0.00 6.13
1182 1188 1.291906 GGCAACCAATTCCAACCCG 59.708 57.895 0.00 0.00 0.00 5.28
1195 1201 1.975660 TGGTTGTAGTTCAGGGCAAC 58.024 50.000 0.00 0.00 40.08 4.17
1196 1202 2.738587 TTGGTTGTAGTTCAGGGCAA 57.261 45.000 0.00 0.00 0.00 4.52
1197 1203 2.890311 CAATTGGTTGTAGTTCAGGGCA 59.110 45.455 0.00 0.00 0.00 5.36
1198 1204 2.890945 ACAATTGGTTGTAGTTCAGGGC 59.109 45.455 10.83 0.00 46.37 5.19
1238 1244 5.894964 TGGCCACCTAAGAAAAAGTACTTTT 59.105 36.000 24.66 24.66 43.88 2.27
1239 1245 5.451354 TGGCCACCTAAGAAAAAGTACTTT 58.549 37.500 15.22 15.22 0.00 2.66
1240 1246 5.056553 TGGCCACCTAAGAAAAAGTACTT 57.943 39.130 0.00 1.12 0.00 2.24
1241 1247 4.717279 TGGCCACCTAAGAAAAAGTACT 57.283 40.909 0.00 0.00 0.00 2.73
1242 1248 5.067954 TCTTGGCCACCTAAGAAAAAGTAC 58.932 41.667 3.88 0.00 30.49 2.73
1243 1249 5.313280 TCTTGGCCACCTAAGAAAAAGTA 57.687 39.130 3.88 0.00 30.49 2.24
1244 1250 4.145052 CTCTTGGCCACCTAAGAAAAAGT 58.855 43.478 3.88 0.00 32.96 2.66
1245 1251 3.507622 CCTCTTGGCCACCTAAGAAAAAG 59.492 47.826 3.88 0.00 32.96 2.27
1246 1252 3.496331 CCTCTTGGCCACCTAAGAAAAA 58.504 45.455 3.88 0.00 32.96 1.94
1247 1253 2.225017 CCCTCTTGGCCACCTAAGAAAA 60.225 50.000 3.88 0.00 32.96 2.29
1248 1254 1.354368 CCCTCTTGGCCACCTAAGAAA 59.646 52.381 3.88 0.00 32.96 2.52
1249 1255 0.991920 CCCTCTTGGCCACCTAAGAA 59.008 55.000 3.88 0.00 32.96 2.52
1836 1842 2.369394 GTCGAGGATTTCAGGCCAATT 58.631 47.619 5.01 0.00 0.00 2.32
2266 2272 7.344093 TCCAAATAAAATGCATCATAGACCCAA 59.656 33.333 0.00 0.00 0.00 4.12
2397 2403 3.711704 TGTCCCAAAGAGAGTTCTTCAGT 59.288 43.478 0.00 0.00 42.80 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.