Multiple sequence alignment - TraesCS7A01G443200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G443200 chr7A 100.000 2293 0 0 1 2293 637874457 637876749 0.000000e+00 4235
1 TraesCS7A01G443200 chr7A 91.841 429 31 2 1433 1861 683770715 683771139 1.940000e-166 595
2 TraesCS7A01G443200 chr7A 100.000 267 0 0 2654 2920 637877110 637877376 7.270000e-136 494
3 TraesCS7A01G443200 chr7A 94.194 155 9 0 1 155 147913329 147913175 1.350000e-58 237
4 TraesCS7A01G443200 chr7A 93.506 154 10 0 1 154 147920309 147920462 2.260000e-56 230
5 TraesCS7A01G443200 chr7B 87.367 847 55 19 777 1604 597150645 597151458 0.000000e+00 924
6 TraesCS7A01G443200 chr7B 93.258 267 17 1 1657 1923 597185344 597185609 2.730000e-105 392
7 TraesCS7A01G443200 chr7B 95.522 67 3 0 325 391 597148243 597148309 1.110000e-19 108
8 TraesCS7A01G443200 chr7D 88.726 683 43 14 929 1604 552270784 552271439 0.000000e+00 804
9 TraesCS7A01G443200 chr7D 94.410 322 14 2 1604 1924 552271488 552271806 2.610000e-135 492
10 TraesCS7A01G443200 chr7D 94.000 150 9 0 1926 2075 552271899 552272048 8.140000e-56 228
11 TraesCS7A01G443200 chr7D 92.188 128 8 1 771 898 552270661 552270786 2.310000e-41 180
12 TraesCS7A01G443200 chr7D 78.571 252 16 24 315 535 552184677 552184921 6.570000e-27 132
13 TraesCS7A01G443200 chr7D 95.522 67 3 0 325 391 552269799 552269865 1.110000e-19 108
14 TraesCS7A01G443200 chr3A 96.443 253 9 0 2668 2920 735383249 735382997 4.500000e-113 418
15 TraesCS7A01G443200 chr3A 96.172 209 7 1 2085 2293 735383644 735383437 1.000000e-89 340
16 TraesCS7A01G443200 chr6B 94.382 267 15 0 2654 2920 201205360 201205626 7.530000e-111 411
17 TraesCS7A01G443200 chr6B 95.261 211 10 0 2082 2292 201205102 201205312 4.660000e-88 335
18 TraesCS7A01G443200 chr6B 92.258 155 12 0 7 161 661539040 661538886 1.360000e-53 220
19 TraesCS7A01G443200 chr2B 93.633 267 17 0 2654 2920 772226072 772226338 1.630000e-107 399
20 TraesCS7A01G443200 chr2B 96.209 211 8 0 2082 2292 772225815 772226025 2.150000e-91 346
21 TraesCS7A01G443200 chr5B 92.000 250 20 0 2671 2920 693941929 693942178 4.630000e-93 351
22 TraesCS7A01G443200 chr5B 96.209 211 8 0 2082 2292 693941448 693941658 2.150000e-91 346
23 TraesCS7A01G443200 chr2D 87.850 214 26 0 2707 2920 598731153 598730940 4.830000e-63 252
24 TraesCS7A01G443200 chr2A 94.702 151 8 0 4 154 769227737 769227587 4.860000e-58 235
25 TraesCS7A01G443200 chr2A 93.506 154 10 0 1 154 115136734 115136887 2.260000e-56 230
26 TraesCS7A01G443200 chr4A 94.040 151 9 0 4 154 604389301 604389451 2.260000e-56 230
27 TraesCS7A01G443200 chr5A 93.377 151 10 0 4 154 650150629 650150479 1.050000e-54 224
28 TraesCS7A01G443200 chr4D 91.875 160 13 0 1 160 97474214 97474055 1.050000e-54 224
29 TraesCS7A01G443200 chr1B 92.308 156 12 0 5 160 364281516 364281361 3.790000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G443200 chr7A 637874457 637877376 2919 False 2364.5 4235 100.0000 1 2920 2 chr7A.!!$F3 2919
1 TraesCS7A01G443200 chr7B 597148243 597151458 3215 False 516.0 924 91.4445 325 1604 2 chr7B.!!$F2 1279
2 TraesCS7A01G443200 chr7D 552269799 552272048 2249 False 362.4 804 92.9692 325 2075 5 chr7D.!!$F2 1750
3 TraesCS7A01G443200 chr3A 735382997 735383644 647 True 379.0 418 96.3075 2085 2920 2 chr3A.!!$R1 835
4 TraesCS7A01G443200 chr6B 201205102 201205626 524 False 373.0 411 94.8215 2082 2920 2 chr6B.!!$F1 838
5 TraesCS7A01G443200 chr2B 772225815 772226338 523 False 372.5 399 94.9210 2082 2920 2 chr2B.!!$F1 838
6 TraesCS7A01G443200 chr5B 693941448 693942178 730 False 348.5 351 94.1045 2082 2920 2 chr5B.!!$F1 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 457 0.036010 AGGCACAACAATCGGAGAGG 60.036 55.0 0.0 0.0 43.63 3.69 F
675 3026 0.038618 TAACGCTGTGTGCTGACGAT 60.039 50.0 0.0 0.0 40.11 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 3922 0.251165 CACCCCAGGAAATCGTTGGT 60.251 55.000 0.00 0.0 0.0 3.67 R
2661 5238 1.067142 TGGACTGTCAGGCAATCGTAC 60.067 52.381 8.27 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.596562 CGTCAGAAAAACGGTTAAATCGC 59.403 43.478 0.00 0.00 36.51 4.58
27 28 4.609783 CGTCAGAAAAACGGTTAAATCGCT 60.610 41.667 0.00 0.00 36.51 4.93
28 29 5.388682 CGTCAGAAAAACGGTTAAATCGCTA 60.389 40.000 0.00 0.00 36.51 4.26
29 30 6.013689 GTCAGAAAAACGGTTAAATCGCTAG 58.986 40.000 0.00 0.00 0.00 3.42
30 31 5.697633 TCAGAAAAACGGTTAAATCGCTAGT 59.302 36.000 0.00 0.00 0.00 2.57
31 32 6.013689 CAGAAAAACGGTTAAATCGCTAGTC 58.986 40.000 0.00 0.00 0.00 2.59
32 33 5.697633 AGAAAAACGGTTAAATCGCTAGTCA 59.302 36.000 0.00 0.00 0.00 3.41
33 34 4.916099 AAACGGTTAAATCGCTAGTCAC 57.084 40.909 0.00 0.00 0.00 3.67
34 35 2.884827 ACGGTTAAATCGCTAGTCACC 58.115 47.619 0.00 0.00 0.00 4.02
35 36 2.231964 ACGGTTAAATCGCTAGTCACCA 59.768 45.455 0.00 0.00 0.00 4.17
36 37 2.601763 CGGTTAAATCGCTAGTCACCAC 59.398 50.000 0.00 0.00 0.00 4.16
37 38 2.601763 GGTTAAATCGCTAGTCACCACG 59.398 50.000 0.00 0.00 0.00 4.94
38 39 2.572191 TAAATCGCTAGTCACCACGG 57.428 50.000 0.00 0.00 0.00 4.94
39 40 0.108329 AAATCGCTAGTCACCACGGG 60.108 55.000 0.00 0.00 0.00 5.28
40 41 1.255667 AATCGCTAGTCACCACGGGT 61.256 55.000 0.00 0.00 35.62 5.28
41 42 1.255667 ATCGCTAGTCACCACGGGTT 61.256 55.000 0.00 0.00 31.02 4.11
42 43 1.005394 CGCTAGTCACCACGGGTTT 60.005 57.895 0.00 0.00 31.02 3.27
43 44 1.289109 CGCTAGTCACCACGGGTTTG 61.289 60.000 0.00 0.00 31.02 2.93
44 45 0.953960 GCTAGTCACCACGGGTTTGG 60.954 60.000 0.00 0.00 43.04 3.28
45 46 0.321298 CTAGTCACCACGGGTTTGGG 60.321 60.000 0.00 0.00 41.49 4.12
46 47 1.055551 TAGTCACCACGGGTTTGGGT 61.056 55.000 0.00 0.00 41.49 4.51
47 48 1.454295 GTCACCACGGGTTTGGGTT 60.454 57.895 0.00 0.00 41.49 4.11
48 49 1.038681 GTCACCACGGGTTTGGGTTT 61.039 55.000 0.00 0.00 41.49 3.27
49 50 0.324460 TCACCACGGGTTTGGGTTTT 60.324 50.000 0.00 0.00 41.49 2.43
50 51 0.537653 CACCACGGGTTTGGGTTTTT 59.462 50.000 0.00 0.00 41.49 1.94
65 66 3.928343 TTTTTGAAACAGCGGACCG 57.072 47.368 10.29 10.29 0.00 4.79
76 77 4.287580 CGGACCGCATGTTTGGTA 57.712 55.556 0.00 0.00 38.99 3.25
77 78 2.086510 CGGACCGCATGTTTGGTAG 58.913 57.895 0.00 1.84 38.99 3.18
78 79 1.800681 GGACCGCATGTTTGGTAGC 59.199 57.895 6.43 0.00 38.99 3.58
79 80 0.676782 GGACCGCATGTTTGGTAGCT 60.677 55.000 6.43 0.00 38.99 3.32
80 81 1.165270 GACCGCATGTTTGGTAGCTT 58.835 50.000 6.43 0.00 38.99 3.74
81 82 1.539827 GACCGCATGTTTGGTAGCTTT 59.460 47.619 6.43 0.00 38.99 3.51
82 83 1.960689 ACCGCATGTTTGGTAGCTTTT 59.039 42.857 0.00 0.00 36.50 2.27
83 84 2.364002 ACCGCATGTTTGGTAGCTTTTT 59.636 40.909 0.00 0.00 36.50 1.94
84 85 2.730928 CCGCATGTTTGGTAGCTTTTTG 59.269 45.455 0.00 0.00 0.00 2.44
85 86 3.551863 CCGCATGTTTGGTAGCTTTTTGA 60.552 43.478 0.00 0.00 0.00 2.69
86 87 3.670055 CGCATGTTTGGTAGCTTTTTGAG 59.330 43.478 0.00 0.00 0.00 3.02
87 88 4.556501 CGCATGTTTGGTAGCTTTTTGAGA 60.557 41.667 0.00 0.00 0.00 3.27
88 89 5.288804 GCATGTTTGGTAGCTTTTTGAGAA 58.711 37.500 0.00 0.00 0.00 2.87
89 90 5.752955 GCATGTTTGGTAGCTTTTTGAGAAA 59.247 36.000 0.00 0.00 0.00 2.52
90 91 6.257630 GCATGTTTGGTAGCTTTTTGAGAAAA 59.742 34.615 0.00 0.00 33.86 2.29
91 92 7.201600 GCATGTTTGGTAGCTTTTTGAGAAAAA 60.202 33.333 0.00 0.00 37.99 1.94
92 93 8.829612 CATGTTTGGTAGCTTTTTGAGAAAAAT 58.170 29.630 0.00 0.00 39.43 1.82
93 94 8.785329 TGTTTGGTAGCTTTTTGAGAAAAATT 57.215 26.923 0.00 0.00 39.43 1.82
94 95 9.877178 TGTTTGGTAGCTTTTTGAGAAAAATTA 57.123 25.926 0.00 0.00 39.43 1.40
134 135 9.465199 TTTTGAAACCTTAACCTGTAAACTAGT 57.535 29.630 0.00 0.00 0.00 2.57
136 137 9.768662 TTGAAACCTTAACCTGTAAACTAGTAG 57.231 33.333 0.00 0.00 0.00 2.57
137 138 8.927411 TGAAACCTTAACCTGTAAACTAGTAGT 58.073 33.333 0.00 0.00 0.00 2.73
138 139 9.770097 GAAACCTTAACCTGTAAACTAGTAGTT 57.230 33.333 9.85 9.85 40.80 2.24
168 169 4.893424 TTTACTCCAACTTGTCAAGTGC 57.107 40.909 18.84 0.00 41.91 4.40
169 170 2.717639 ACTCCAACTTGTCAAGTGCT 57.282 45.000 18.84 1.40 41.91 4.40
170 171 3.004752 ACTCCAACTTGTCAAGTGCTT 57.995 42.857 18.84 0.63 41.91 3.91
171 172 2.684881 ACTCCAACTTGTCAAGTGCTTG 59.315 45.455 18.84 12.96 41.91 4.01
172 173 2.945008 CTCCAACTTGTCAAGTGCTTGA 59.055 45.455 18.84 10.26 46.27 3.02
178 179 2.032528 TCAAGTGCTTGAGGCCCG 59.967 61.111 10.26 0.00 43.90 6.13
179 180 2.032528 CAAGTGCTTGAGGCCCGA 59.967 61.111 0.00 0.00 42.93 5.14
180 181 2.037136 CAAGTGCTTGAGGCCCGAG 61.037 63.158 0.00 1.06 42.93 4.63
191 192 4.319133 GCCCGAGCCAATCTTTGA 57.681 55.556 0.00 0.00 0.00 2.69
192 193 1.803289 GCCCGAGCCAATCTTTGAC 59.197 57.895 0.00 0.00 0.00 3.18
193 194 1.657751 GCCCGAGCCAATCTTTGACC 61.658 60.000 0.00 0.00 0.00 4.02
194 195 0.322456 CCCGAGCCAATCTTTGACCA 60.322 55.000 0.00 0.00 0.00 4.02
195 196 1.683011 CCCGAGCCAATCTTTGACCAT 60.683 52.381 0.00 0.00 0.00 3.55
196 197 1.672881 CCGAGCCAATCTTTGACCATC 59.327 52.381 0.00 0.00 0.00 3.51
197 198 1.672881 CGAGCCAATCTTTGACCATCC 59.327 52.381 0.00 0.00 0.00 3.51
198 199 2.681976 CGAGCCAATCTTTGACCATCCT 60.682 50.000 0.00 0.00 0.00 3.24
199 200 2.948315 GAGCCAATCTTTGACCATCCTC 59.052 50.000 0.00 0.00 0.00 3.71
200 201 2.027385 GCCAATCTTTGACCATCCTCC 58.973 52.381 0.00 0.00 0.00 4.30
201 202 2.292267 CCAATCTTTGACCATCCTCCG 58.708 52.381 0.00 0.00 0.00 4.63
202 203 2.092968 CCAATCTTTGACCATCCTCCGA 60.093 50.000 0.00 0.00 0.00 4.55
203 204 3.609853 CAATCTTTGACCATCCTCCGAA 58.390 45.455 0.00 0.00 0.00 4.30
204 205 4.202441 CAATCTTTGACCATCCTCCGAAT 58.798 43.478 0.00 0.00 0.00 3.34
205 206 4.510167 ATCTTTGACCATCCTCCGAATT 57.490 40.909 0.00 0.00 0.00 2.17
206 207 3.873910 TCTTTGACCATCCTCCGAATTC 58.126 45.455 0.00 0.00 0.00 2.17
207 208 3.263170 TCTTTGACCATCCTCCGAATTCA 59.737 43.478 6.22 0.00 0.00 2.57
208 209 2.691409 TGACCATCCTCCGAATTCAC 57.309 50.000 6.22 0.00 0.00 3.18
209 210 1.134818 TGACCATCCTCCGAATTCACG 60.135 52.381 6.22 0.00 0.00 4.35
227 228 4.757554 GCGTGAACCGGCATTTAC 57.242 55.556 0.00 0.00 36.94 2.01
228 229 1.225908 GCGTGAACCGGCATTTACG 60.226 57.895 15.15 15.15 42.58 3.18
236 237 2.849081 CGGCATTTACGGAACAGGT 58.151 52.632 0.00 0.00 0.00 4.00
237 238 0.446222 CGGCATTTACGGAACAGGTG 59.554 55.000 0.00 0.00 0.00 4.00
238 239 1.816074 GGCATTTACGGAACAGGTGA 58.184 50.000 0.00 0.00 0.00 4.02
239 240 1.737793 GGCATTTACGGAACAGGTGAG 59.262 52.381 0.00 0.00 0.00 3.51
240 241 2.423577 GCATTTACGGAACAGGTGAGT 58.576 47.619 0.00 0.00 0.00 3.41
241 242 2.415512 GCATTTACGGAACAGGTGAGTC 59.584 50.000 0.00 0.00 0.00 3.36
242 243 3.864921 GCATTTACGGAACAGGTGAGTCT 60.865 47.826 0.00 0.00 0.00 3.24
243 244 3.655276 TTTACGGAACAGGTGAGTCTC 57.345 47.619 0.00 0.00 0.00 3.36
244 245 2.281539 TACGGAACAGGTGAGTCTCA 57.718 50.000 0.00 0.00 0.00 3.27
245 246 1.633774 ACGGAACAGGTGAGTCTCAT 58.366 50.000 5.68 0.00 0.00 2.90
246 247 1.971357 ACGGAACAGGTGAGTCTCATT 59.029 47.619 5.68 0.00 0.00 2.57
247 248 2.289072 ACGGAACAGGTGAGTCTCATTG 60.289 50.000 5.68 10.29 0.00 2.82
248 249 2.704572 GGAACAGGTGAGTCTCATTGG 58.295 52.381 5.68 1.22 0.00 3.16
249 250 2.079925 GAACAGGTGAGTCTCATTGGC 58.920 52.381 5.68 2.18 0.00 4.52
250 251 0.326264 ACAGGTGAGTCTCATTGGCC 59.674 55.000 5.68 0.00 0.00 5.36
251 252 0.617413 CAGGTGAGTCTCATTGGCCT 59.383 55.000 5.68 4.88 0.00 5.19
252 253 0.908198 AGGTGAGTCTCATTGGCCTC 59.092 55.000 5.68 0.00 0.00 4.70
253 254 0.908198 GGTGAGTCTCATTGGCCTCT 59.092 55.000 5.68 0.00 0.00 3.69
254 255 1.280421 GGTGAGTCTCATTGGCCTCTT 59.720 52.381 5.68 0.00 0.00 2.85
255 256 2.354259 GTGAGTCTCATTGGCCTCTTG 58.646 52.381 5.68 0.00 0.00 3.02
256 257 1.339438 TGAGTCTCATTGGCCTCTTGC 60.339 52.381 3.32 0.00 40.16 4.01
257 258 0.694771 AGTCTCATTGGCCTCTTGCA 59.305 50.000 3.32 0.00 43.89 4.08
258 259 0.807496 GTCTCATTGGCCTCTTGCAC 59.193 55.000 3.32 0.00 43.89 4.57
259 260 0.674581 TCTCATTGGCCTCTTGCACG 60.675 55.000 3.32 0.00 43.89 5.34
260 261 0.957395 CTCATTGGCCTCTTGCACGT 60.957 55.000 3.32 0.00 43.89 4.49
261 262 1.210931 CATTGGCCTCTTGCACGTG 59.789 57.895 12.28 12.28 43.89 4.49
262 263 1.973281 ATTGGCCTCTTGCACGTGG 60.973 57.895 18.88 6.92 43.89 4.94
263 264 2.697147 ATTGGCCTCTTGCACGTGGT 62.697 55.000 18.88 0.00 43.89 4.16
264 265 3.357079 GGCCTCTTGCACGTGGTG 61.357 66.667 18.88 1.53 43.89 4.17
273 274 2.591429 CACGTGGTGCAAGAGCCA 60.591 61.111 7.95 0.00 41.13 4.75
277 278 4.927557 TGGTGCAAGAGCCACAAT 57.072 50.000 0.00 0.00 41.13 2.71
278 279 3.130264 TGGTGCAAGAGCCACAATT 57.870 47.368 0.00 0.00 41.13 2.32
279 280 0.961019 TGGTGCAAGAGCCACAATTC 59.039 50.000 0.00 0.00 41.13 2.17
280 281 1.251251 GGTGCAAGAGCCACAATTCT 58.749 50.000 0.00 0.00 41.13 2.40
281 282 1.200948 GGTGCAAGAGCCACAATTCTC 59.799 52.381 0.00 0.00 41.13 2.87
282 283 1.200948 GTGCAAGAGCCACAATTCTCC 59.799 52.381 0.00 0.00 41.13 3.71
283 284 0.813821 GCAAGAGCCACAATTCTCCC 59.186 55.000 0.00 0.00 33.58 4.30
284 285 1.887956 GCAAGAGCCACAATTCTCCCA 60.888 52.381 0.00 0.00 33.58 4.37
285 286 2.731572 CAAGAGCCACAATTCTCCCAT 58.268 47.619 0.00 0.00 0.00 4.00
286 287 2.686915 CAAGAGCCACAATTCTCCCATC 59.313 50.000 0.00 0.00 0.00 3.51
287 288 2.203584 AGAGCCACAATTCTCCCATCT 58.796 47.619 0.00 0.00 0.00 2.90
288 289 3.387962 AGAGCCACAATTCTCCCATCTA 58.612 45.455 0.00 0.00 0.00 1.98
289 290 3.979347 AGAGCCACAATTCTCCCATCTAT 59.021 43.478 0.00 0.00 0.00 1.98
290 291 4.414846 AGAGCCACAATTCTCCCATCTATT 59.585 41.667 0.00 0.00 0.00 1.73
291 292 5.103771 AGAGCCACAATTCTCCCATCTATTT 60.104 40.000 0.00 0.00 0.00 1.40
292 293 5.522641 AGCCACAATTCTCCCATCTATTTT 58.477 37.500 0.00 0.00 0.00 1.82
293 294 5.960202 AGCCACAATTCTCCCATCTATTTTT 59.040 36.000 0.00 0.00 0.00 1.94
310 311 1.086696 TTTTGCTGCAGTCTATCCGC 58.913 50.000 16.64 0.00 0.00 5.54
311 312 0.744414 TTTGCTGCAGTCTATCCGCC 60.744 55.000 16.64 0.00 0.00 6.13
312 313 2.659897 GCTGCAGTCTATCCGCCG 60.660 66.667 16.64 0.00 0.00 6.46
313 314 2.808315 CTGCAGTCTATCCGCCGT 59.192 61.111 5.25 0.00 0.00 5.68
314 315 1.299468 CTGCAGTCTATCCGCCGTC 60.299 63.158 5.25 0.00 0.00 4.79
315 316 2.027751 GCAGTCTATCCGCCGTCC 59.972 66.667 0.00 0.00 0.00 4.79
316 317 2.782222 GCAGTCTATCCGCCGTCCA 61.782 63.158 0.00 0.00 0.00 4.02
317 318 1.360551 CAGTCTATCCGCCGTCCAG 59.639 63.158 0.00 0.00 0.00 3.86
318 319 1.101635 CAGTCTATCCGCCGTCCAGA 61.102 60.000 0.00 0.00 0.00 3.86
319 320 0.178987 AGTCTATCCGCCGTCCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
320 321 1.073444 AGTCTATCCGCCGTCCAGATA 59.927 52.381 0.00 0.00 0.00 1.98
321 322 1.199558 GTCTATCCGCCGTCCAGATAC 59.800 57.143 0.00 0.00 0.00 2.24
322 323 0.168348 CTATCCGCCGTCCAGATACG 59.832 60.000 0.00 0.00 42.49 3.06
323 324 0.535780 TATCCGCCGTCCAGATACGT 60.536 55.000 0.00 0.00 41.27 3.57
362 363 3.243907 ACTGCTCTTGGTTGACACTACTC 60.244 47.826 0.00 0.00 0.00 2.59
371 372 3.381949 GTTGACACTACTCGCTTTCAGT 58.618 45.455 0.00 0.00 0.00 3.41
391 392 1.194781 TTGGGCCTCAGAGAGTGGAC 61.195 60.000 4.53 0.00 38.23 4.02
392 393 1.610673 GGGCCTCAGAGAGTGGACA 60.611 63.158 0.84 0.00 40.87 4.02
393 394 1.612395 GGGCCTCAGAGAGTGGACAG 61.612 65.000 0.84 0.00 40.87 3.51
395 396 0.613292 GCCTCAGAGAGTGGACAGGA 60.613 60.000 0.00 0.00 32.49 3.86
396 397 1.473258 CCTCAGAGAGTGGACAGGAG 58.527 60.000 0.00 0.00 32.49 3.69
397 398 0.817013 CTCAGAGAGTGGACAGGAGC 59.183 60.000 0.00 0.00 0.00 4.70
400 401 1.217779 GAGAGTGGACAGGAGCAGC 59.782 63.158 0.00 0.00 0.00 5.25
401 402 1.534959 AGAGTGGACAGGAGCAGCA 60.535 57.895 0.00 0.00 0.00 4.41
402 403 1.079266 GAGTGGACAGGAGCAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
403 404 1.825281 GAGTGGACAGGAGCAGCAGT 61.825 60.000 0.00 0.00 0.00 4.40
405 406 0.390472 GTGGACAGGAGCAGCAGTAC 60.390 60.000 0.00 0.00 0.00 2.73
406 407 1.153745 GGACAGGAGCAGCAGTACG 60.154 63.158 0.00 0.00 0.00 3.67
407 408 1.807573 GACAGGAGCAGCAGTACGC 60.808 63.158 0.00 2.08 42.91 4.42
408 409 2.262603 CAGGAGCAGCAGTACGCA 59.737 61.111 11.30 0.00 46.13 5.24
410 411 2.815647 GGAGCAGCAGTACGCACC 60.816 66.667 11.30 2.48 46.13 5.01
411 412 2.048222 GAGCAGCAGTACGCACCA 60.048 61.111 11.30 0.00 46.13 4.17
413 414 3.793144 GCAGCAGTACGCACCAGC 61.793 66.667 11.30 6.59 46.13 4.85
414 415 2.047844 CAGCAGTACGCACCAGCT 60.048 61.111 11.30 0.00 46.13 4.24
415 416 2.097038 CAGCAGTACGCACCAGCTC 61.097 63.158 11.30 0.00 46.13 4.09
416 417 2.048222 GCAGTACGCACCAGCTCA 60.048 61.111 5.07 0.00 41.79 4.26
417 418 2.097038 GCAGTACGCACCAGCTCAG 61.097 63.158 5.07 0.00 41.79 3.35
418 419 1.446792 CAGTACGCACCAGCTCAGG 60.447 63.158 0.00 0.00 39.10 3.86
429 430 2.667418 GCTCAGGCTCAGCTCCAA 59.333 61.111 1.97 0.00 33.75 3.53
430 431 1.744741 GCTCAGGCTCAGCTCCAAC 60.745 63.158 1.97 0.00 33.75 3.77
431 432 1.447489 CTCAGGCTCAGCTCCAACG 60.447 63.158 0.00 0.00 0.00 4.10
432 433 2.435586 CAGGCTCAGCTCCAACGG 60.436 66.667 0.00 0.00 0.00 4.44
433 434 4.400961 AGGCTCAGCTCCAACGGC 62.401 66.667 0.00 0.00 0.00 5.68
435 436 4.742201 GCTCAGCTCCAACGGCGA 62.742 66.667 16.62 0.00 34.52 5.54
436 437 2.048222 CTCAGCTCCAACGGCGAA 60.048 61.111 16.62 0.00 34.52 4.70
437 438 1.667830 CTCAGCTCCAACGGCGAAA 60.668 57.895 16.62 0.00 34.52 3.46
438 439 1.630244 CTCAGCTCCAACGGCGAAAG 61.630 60.000 16.62 6.05 34.52 2.62
439 440 2.358737 AGCTCCAACGGCGAAAGG 60.359 61.111 16.62 12.44 34.52 3.11
450 451 2.712077 GCGAAAGGCACAACAATCG 58.288 52.632 0.00 0.00 42.87 3.34
451 452 0.729140 GCGAAAGGCACAACAATCGG 60.729 55.000 0.00 0.00 42.87 4.18
452 453 0.871722 CGAAAGGCACAACAATCGGA 59.128 50.000 0.00 0.00 0.00 4.55
453 454 1.135972 CGAAAGGCACAACAATCGGAG 60.136 52.381 0.00 0.00 0.00 4.63
454 455 2.151202 GAAAGGCACAACAATCGGAGA 58.849 47.619 0.00 0.00 45.75 3.71
455 456 1.813513 AAGGCACAACAATCGGAGAG 58.186 50.000 0.00 0.00 43.63 3.20
456 457 0.036010 AGGCACAACAATCGGAGAGG 60.036 55.000 0.00 0.00 43.63 3.69
457 458 1.648467 GGCACAACAATCGGAGAGGC 61.648 60.000 0.00 0.00 43.63 4.70
458 459 0.674895 GCACAACAATCGGAGAGGCT 60.675 55.000 0.00 0.00 43.63 4.58
459 460 1.081892 CACAACAATCGGAGAGGCTG 58.918 55.000 0.00 0.00 43.63 4.85
513 2236 5.176406 CAGCAGAACCATCATATGTAAGACG 59.824 44.000 1.90 0.00 0.00 4.18
517 2240 3.728845 ACCATCATATGTAAGACGTGGC 58.271 45.455 1.90 0.00 0.00 5.01
530 2253 6.600032 TGTAAGACGTGGCACCATATAAAAAT 59.400 34.615 12.86 0.00 0.00 1.82
531 2254 5.499139 AGACGTGGCACCATATAAAAATG 57.501 39.130 12.86 0.00 0.00 2.32
534 2257 4.142271 ACGTGGCACCATATAAAAATGTGG 60.142 41.667 12.86 0.16 38.58 4.17
535 2258 4.119136 GTGGCACCATATAAAAATGTGGC 58.881 43.478 6.29 7.46 36.42 5.01
538 2261 4.141959 GGCACCATATAAAAATGTGGCTGT 60.142 41.667 7.18 0.00 36.42 4.40
540 2263 5.977129 GCACCATATAAAAATGTGGCTGTAC 59.023 40.000 1.50 0.00 36.42 2.90
541 2264 6.198687 CACCATATAAAAATGTGGCTGTACG 58.801 40.000 1.50 0.00 36.42 3.67
542 2265 5.883673 ACCATATAAAAATGTGGCTGTACGT 59.116 36.000 0.00 0.00 36.42 3.57
548 2862 4.737855 AAATGTGGCTGTACGTAGATCT 57.262 40.909 0.00 0.00 0.00 2.75
551 2865 2.617308 TGTGGCTGTACGTAGATCTAGC 59.383 50.000 1.64 3.38 0.00 3.42
553 2867 2.879026 TGGCTGTACGTAGATCTAGCAG 59.121 50.000 13.49 13.97 33.05 4.24
557 2871 4.084223 GCTGTACGTAGATCTAGCAGAGTC 60.084 50.000 19.36 2.33 0.00 3.36
568 2882 1.251251 AGCAGAGTCATTTGGTTGGC 58.749 50.000 0.00 0.00 0.00 4.52
572 2886 1.425066 AGAGTCATTTGGTTGGCTGGA 59.575 47.619 0.00 0.00 29.99 3.86
575 2889 2.170166 GTCATTTGGTTGGCTGGATGA 58.830 47.619 0.00 0.00 0.00 2.92
576 2890 2.562298 GTCATTTGGTTGGCTGGATGAA 59.438 45.455 0.00 0.00 0.00 2.57
577 2891 2.562298 TCATTTGGTTGGCTGGATGAAC 59.438 45.455 0.00 0.00 0.00 3.18
578 2892 2.380064 TTTGGTTGGCTGGATGAACT 57.620 45.000 0.00 0.00 0.00 3.01
579 2893 1.619654 TTGGTTGGCTGGATGAACTG 58.380 50.000 0.00 0.00 0.00 3.16
580 2894 0.895100 TGGTTGGCTGGATGAACTGC 60.895 55.000 0.00 0.00 34.94 4.40
581 2895 0.610232 GGTTGGCTGGATGAACTGCT 60.610 55.000 0.00 0.00 35.86 4.24
584 2898 1.246056 TGGCTGGATGAACTGCTTGC 61.246 55.000 0.00 0.00 35.86 4.01
585 2899 0.964358 GGCTGGATGAACTGCTTGCT 60.964 55.000 0.00 0.00 35.86 3.91
587 2901 1.817357 CTGGATGAACTGCTTGCTGA 58.183 50.000 6.50 0.00 0.00 4.26
588 2902 1.738350 CTGGATGAACTGCTTGCTGAG 59.262 52.381 6.50 0.00 0.00 3.35
589 2903 1.093159 GGATGAACTGCTTGCTGAGG 58.907 55.000 6.50 0.00 0.00 3.86
591 2905 1.303799 ATGAACTGCTTGCTGAGGCG 61.304 55.000 6.50 0.00 42.25 5.52
592 2906 2.670934 AACTGCTTGCTGAGGCGG 60.671 61.111 6.50 0.00 42.25 6.13
593 2907 3.182590 AACTGCTTGCTGAGGCGGA 62.183 57.895 6.50 0.00 42.25 5.54
594 2908 2.359107 CTGCTTGCTGAGGCGGAA 60.359 61.111 0.00 0.00 42.25 4.30
595 2909 2.359107 TGCTTGCTGAGGCGGAAG 60.359 61.111 0.00 0.00 42.25 3.46
596 2910 2.046892 GCTTGCTGAGGCGGAAGA 60.047 61.111 0.00 0.00 42.25 2.87
597 2911 1.672356 GCTTGCTGAGGCGGAAGAA 60.672 57.895 0.00 0.00 42.25 2.52
599 2913 1.457346 CTTGCTGAGGCGGAAGAATT 58.543 50.000 0.00 0.00 42.25 2.17
600 2914 1.131883 CTTGCTGAGGCGGAAGAATTG 59.868 52.381 0.00 0.00 42.25 2.32
602 2916 1.028868 GCTGAGGCGGAAGAATTGCT 61.029 55.000 0.00 0.00 32.50 3.91
605 2919 0.741221 GAGGCGGAAGAATTGCTCGT 60.741 55.000 0.00 0.00 32.50 4.18
606 2920 0.741221 AGGCGGAAGAATTGCTCGTC 60.741 55.000 0.00 0.00 32.50 4.20
607 2921 1.345176 GCGGAAGAATTGCTCGTCG 59.655 57.895 0.00 0.00 33.69 5.12
608 2922 1.352156 GCGGAAGAATTGCTCGTCGT 61.352 55.000 0.00 0.00 33.69 4.34
609 2923 0.366871 CGGAAGAATTGCTCGTCGTG 59.633 55.000 0.00 0.00 33.69 4.35
610 2924 0.095417 GGAAGAATTGCTCGTCGTGC 59.905 55.000 12.19 12.19 33.69 5.34
611 2925 0.790207 GAAGAATTGCTCGTCGTGCA 59.210 50.000 17.34 17.34 38.80 4.57
613 2927 0.319900 AGAATTGCTCGTCGTGCAGT 60.320 50.000 19.88 15.51 41.71 4.40
614 2928 0.179240 GAATTGCTCGTCGTGCAGTG 60.179 55.000 19.88 0.00 41.71 3.66
616 2930 3.790334 TTGCTCGTCGTGCAGTGCT 62.790 57.895 19.88 0.00 41.71 4.40
622 2936 4.032987 TCGTGCAGTGCTCGCGTA 62.033 61.111 29.41 13.86 43.69 4.42
623 2937 3.827784 CGTGCAGTGCTCGCGTAC 61.828 66.667 24.52 8.66 38.59 3.67
624 2938 3.827784 GTGCAGTGCTCGCGTACG 61.828 66.667 17.60 11.84 42.01 3.67
625 2939 4.337060 TGCAGTGCTCGCGTACGT 62.337 61.111 17.60 0.00 41.18 3.57
644 2958 2.813908 CGTGCCTACGGGAGCAAC 60.814 66.667 0.00 0.00 46.23 4.17
645 2959 2.345991 GTGCCTACGGGAGCAACA 59.654 61.111 0.00 0.00 41.48 3.33
646 2960 1.741770 GTGCCTACGGGAGCAACAG 60.742 63.158 0.00 0.00 41.48 3.16
647 2961 2.125106 GCCTACGGGAGCAACAGG 60.125 66.667 0.00 0.00 33.58 4.00
648 2962 2.125106 CCTACGGGAGCAACAGGC 60.125 66.667 0.00 0.00 45.30 4.85
650 2964 2.925706 TACGGGAGCAACAGGCCA 60.926 61.111 5.01 0.00 46.50 5.36
651 2965 2.463589 CTACGGGAGCAACAGGCCAA 62.464 60.000 5.01 0.00 46.50 4.52
653 2967 2.203480 GGGAGCAACAGGCCAACA 60.203 61.111 5.01 0.00 46.50 3.33
654 2968 2.270986 GGGAGCAACAGGCCAACAG 61.271 63.158 5.01 0.00 46.50 3.16
655 2969 1.529244 GGAGCAACAGGCCAACAGT 60.529 57.895 5.01 0.00 46.50 3.55
656 2970 1.109323 GGAGCAACAGGCCAACAGTT 61.109 55.000 5.01 0.68 46.50 3.16
657 2971 1.604604 GAGCAACAGGCCAACAGTTA 58.395 50.000 5.01 0.00 46.50 2.24
672 3023 1.070577 CAGTTAACGCTGTGTGCTGAC 60.071 52.381 12.44 0.00 40.11 3.51
673 3024 0.111266 GTTAACGCTGTGTGCTGACG 60.111 55.000 0.00 0.00 40.11 4.35
674 3025 0.249114 TTAACGCTGTGTGCTGACGA 60.249 50.000 0.00 0.00 40.11 4.20
675 3026 0.038618 TAACGCTGTGTGCTGACGAT 60.039 50.000 0.00 0.00 40.11 3.73
676 3027 1.560004 AACGCTGTGTGCTGACGATG 61.560 55.000 0.00 0.00 40.11 3.84
677 3028 2.733671 CGCTGTGTGCTGACGATGG 61.734 63.158 0.00 0.00 40.11 3.51
680 3031 2.347490 GTGTGCTGACGATGGGGT 59.653 61.111 0.00 0.00 0.00 4.95
681 3032 1.741770 GTGTGCTGACGATGGGGTC 60.742 63.158 0.00 0.00 37.45 4.46
682 3033 2.213513 TGTGCTGACGATGGGGTCA 61.214 57.895 0.00 0.00 44.25 4.02
711 3068 6.410540 ACAGATGAAACCTCTGAACCTATTC 58.589 40.000 7.28 0.00 42.22 1.75
713 3070 4.569719 TGAAACCTCTGAACCTATTCCC 57.430 45.455 0.00 0.00 33.49 3.97
716 3073 1.369983 ACCTCTGAACCTATTCCCCCT 59.630 52.381 0.00 0.00 33.49 4.79
735 3092 3.326297 CCCTTTCTCTCTGAACCTGAACT 59.674 47.826 0.00 0.00 33.88 3.01
736 3093 4.562552 CCCTTTCTCTCTGAACCTGAACTC 60.563 50.000 0.00 0.00 33.88 3.01
737 3094 4.562552 CCTTTCTCTCTGAACCTGAACTCC 60.563 50.000 0.00 0.00 33.88 3.85
738 3095 2.163509 TCTCTCTGAACCTGAACTCCG 58.836 52.381 0.00 0.00 0.00 4.63
739 3096 1.203523 CTCTCTGAACCTGAACTCCGG 59.796 57.143 0.00 0.00 0.00 5.14
763 3120 3.206150 GGTTGCTTTCTGTCTCTTCACA 58.794 45.455 0.00 0.00 0.00 3.58
769 3126 5.057149 GCTTTCTGTCTCTTCACAAACCTA 58.943 41.667 0.00 0.00 0.00 3.08
770 3127 5.527582 GCTTTCTGTCTCTTCACAAACCTAA 59.472 40.000 0.00 0.00 0.00 2.69
772 3129 6.479972 TTCTGTCTCTTCACAAACCTAAGA 57.520 37.500 0.00 0.00 0.00 2.10
774 3131 6.692486 TCTGTCTCTTCACAAACCTAAGATC 58.308 40.000 0.00 0.00 0.00 2.75
775 3132 5.470368 TGTCTCTTCACAAACCTAAGATCG 58.530 41.667 0.00 0.00 0.00 3.69
964 3365 4.566004 CCGGGTATAAGTCCATGTACATG 58.434 47.826 26.02 26.02 38.51 3.21
1000 3404 1.590238 CATCGACAACAAGGATCGCTC 59.410 52.381 0.00 0.00 35.82 5.03
1303 3736 4.862092 AGCTCGCCGTGCAGATCG 62.862 66.667 14.01 0.00 0.00 3.69
1335 3768 2.488820 GACCCGCTCTGGTACGTC 59.511 66.667 0.00 0.00 39.24 4.34
1336 3769 2.282674 ACCCGCTCTGGTACGTCA 60.283 61.111 0.00 0.00 36.67 4.35
1339 3772 2.874780 CGCTCTGGTACGTCACGC 60.875 66.667 0.00 0.00 0.00 5.34
1371 3804 3.070018 CAAAGCATGGATACCCTCGATC 58.930 50.000 0.00 0.00 0.00 3.69
1372 3805 0.891373 AGCATGGATACCCTCGATCG 59.109 55.000 9.36 9.36 0.00 3.69
1373 3806 0.737715 GCATGGATACCCTCGATCGC 60.738 60.000 11.09 0.00 0.00 4.58
1403 3836 1.071699 TCCTTCCCTTCTTTGTGACGG 59.928 52.381 0.00 0.00 34.21 4.79
1407 3840 1.237285 CCCTTCTTTGTGACGGCTGG 61.237 60.000 0.00 0.00 33.19 4.85
1408 3841 0.250295 CCTTCTTTGTGACGGCTGGA 60.250 55.000 0.00 0.00 0.00 3.86
1410 3843 0.250295 TTCTTTGTGACGGCTGGAGG 60.250 55.000 0.00 0.00 0.00 4.30
1411 3844 1.118965 TCTTTGTGACGGCTGGAGGA 61.119 55.000 0.00 0.00 0.00 3.71
1413 3846 0.250295 TTTGTGACGGCTGGAGGAAG 60.250 55.000 0.00 0.00 0.00 3.46
1425 3858 4.385088 GGCTGGAGGAAGAAGAAGATGAAT 60.385 45.833 0.00 0.00 0.00 2.57
1426 3859 5.192176 GCTGGAGGAAGAAGAAGATGAATT 58.808 41.667 0.00 0.00 0.00 2.17
1427 3860 5.651576 GCTGGAGGAAGAAGAAGATGAATTT 59.348 40.000 0.00 0.00 0.00 1.82
1428 3861 6.183360 GCTGGAGGAAGAAGAAGATGAATTTC 60.183 42.308 0.00 0.00 0.00 2.17
1429 3862 7.025520 TGGAGGAAGAAGAAGATGAATTTCT 57.974 36.000 0.00 0.00 36.49 2.52
1430 3863 7.465116 TGGAGGAAGAAGAAGATGAATTTCTT 58.535 34.615 0.24 0.24 45.05 2.52
1431 3864 7.946776 TGGAGGAAGAAGAAGATGAATTTCTTT 59.053 33.333 2.20 0.00 43.07 2.52
1432 3865 8.801299 GGAGGAAGAAGAAGATGAATTTCTTTT 58.199 33.333 2.20 0.00 43.07 2.27
1433 3866 9.623350 GAGGAAGAAGAAGATGAATTTCTTTTG 57.377 33.333 2.20 0.00 43.07 2.44
1434 3867 8.583296 AGGAAGAAGAAGATGAATTTCTTTTGG 58.417 33.333 2.20 0.00 43.07 3.28
1435 3868 8.579863 GGAAGAAGAAGATGAATTTCTTTTGGA 58.420 33.333 2.20 0.00 43.07 3.53
1486 3922 0.865769 GAAGCGGTTTTCGAAGCTGA 59.134 50.000 10.04 0.00 42.43 4.26
1496 3932 2.163818 TCGAAGCTGACCAACGATTT 57.836 45.000 0.00 0.00 0.00 2.17
1504 3940 0.037734 GACCAACGATTTCCTGGGGT 59.962 55.000 0.00 0.00 34.31 4.95
1505 3941 0.251165 ACCAACGATTTCCTGGGGTG 60.251 55.000 0.00 0.00 34.31 4.61
1506 3942 0.965363 CCAACGATTTCCTGGGGTGG 60.965 60.000 0.00 0.00 0.00 4.61
1507 3943 0.965363 CAACGATTTCCTGGGGTGGG 60.965 60.000 0.00 0.00 0.00 4.61
1542 3978 1.148157 CGGGCTACATGCTCACGAAG 61.148 60.000 0.00 0.00 43.91 3.79
1543 3979 0.811616 GGGCTACATGCTCACGAAGG 60.812 60.000 0.00 0.00 43.01 3.46
1560 3996 3.080647 GGAATGGCTTCGTTCCGAT 57.919 52.632 2.14 0.00 44.00 4.18
1585 4021 2.587194 CGGCGCAGGAGAAGATGG 60.587 66.667 10.83 0.00 0.00 3.51
1590 4026 0.106335 CGCAGGAGAAGATGGCAGAT 59.894 55.000 0.00 0.00 0.00 2.90
1665 4150 1.836999 ATGTGGACTAACAGCGCCCA 61.837 55.000 2.29 0.00 32.52 5.36
1671 4156 2.224305 GGACTAACAGCGCCCAATCTAT 60.224 50.000 2.29 0.00 0.00 1.98
1673 4158 1.532868 CTAACAGCGCCCAATCTATGC 59.467 52.381 2.29 0.00 0.00 3.14
1688 4173 7.371159 CCAATCTATGCTCGTAGAATTCAGTA 58.629 38.462 8.44 0.00 34.59 2.74
1717 4203 0.713883 CGTCGTTTCATCTTGGACGG 59.286 55.000 4.14 0.00 44.74 4.79
1744 4230 3.849911 TCAGAGATGCAGTAAAGGAACG 58.150 45.455 0.00 0.00 0.00 3.95
1753 4239 3.933332 GCAGTAAAGGAACGCATAACTCT 59.067 43.478 0.00 0.00 0.00 3.24
1771 4257 5.051891 ACTCTATTTCAGTTTGCATGTGC 57.948 39.130 0.00 0.00 42.50 4.57
1791 4277 9.409312 CATGTGCTAGAGAGATTTAGTTGATAG 57.591 37.037 0.00 0.00 0.00 2.08
1842 4328 6.401955 GCAAAACAGAACTTGCAGTTTTTA 57.598 33.333 8.92 0.00 45.81 1.52
1864 4350 1.478510 CTGCGTGGGATTCTGTACTCT 59.521 52.381 0.00 0.00 0.00 3.24
1946 4523 2.162408 GCTGCTAGCTTTACCCAAGTTG 59.838 50.000 17.23 0.00 38.45 3.16
1947 4524 3.412386 CTGCTAGCTTTACCCAAGTTGT 58.588 45.455 17.23 0.00 34.56 3.32
1963 4540 6.183360 CCCAAGTTGTCAAACAAAAACATCAG 60.183 38.462 1.45 0.00 40.15 2.90
1969 4546 5.879223 TGTCAAACAAAAACATCAGCCAAAT 59.121 32.000 0.00 0.00 0.00 2.32
1972 4549 8.063630 GTCAAACAAAAACATCAGCCAAATAAG 58.936 33.333 0.00 0.00 0.00 1.73
2067 4644 9.741168 CGAATAGGCTATTATGTAATCAAAACG 57.259 33.333 19.27 10.06 0.00 3.60
2077 4654 9.787532 ATTATGTAATCAAAACGATCTTGTTGG 57.212 29.630 2.51 0.00 31.11 3.77
2078 4655 6.627395 TGTAATCAAAACGATCTTGTTGGT 57.373 33.333 2.51 0.00 31.11 3.67
2079 4656 6.664515 TGTAATCAAAACGATCTTGTTGGTC 58.335 36.000 2.51 0.00 31.11 4.02
2080 4657 5.766150 AATCAAAACGATCTTGTTGGTCA 57.234 34.783 2.51 0.00 31.11 4.02
2122 4699 2.327325 AGGAAACTACTCTGCAGGGA 57.673 50.000 23.49 3.46 40.61 4.20
2146 4723 6.690194 AGACAAATTCAGCTATCATCAACC 57.310 37.500 0.00 0.00 0.00 3.77
2695 5272 4.042062 TGACAGTCCAGTTCCAAGATCAAT 59.958 41.667 0.00 0.00 0.00 2.57
2712 5289 9.868277 CAAGATCAATGGACCTCTATAGTATTC 57.132 37.037 0.00 0.00 0.00 1.75
2761 5338 3.605749 TTTTGCCTCGGCCTCCTCG 62.606 63.158 0.00 0.00 41.09 4.63
2881 5458 4.666512 ACTGGAAGGCAACATCTGTATTT 58.333 39.130 0.00 0.00 39.30 1.40
2906 5483 4.563580 GCTTCACAACATCTCCTACTGGAA 60.564 45.833 0.00 0.00 42.66 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.596562 GCGATTTAACCGTTTTTCTGACG 59.403 43.478 0.00 0.00 40.05 4.35
5 6 4.779987 AGCGATTTAACCGTTTTTCTGAC 58.220 39.130 0.00 0.00 0.00 3.51
6 7 5.697633 ACTAGCGATTTAACCGTTTTTCTGA 59.302 36.000 0.00 0.00 0.00 3.27
7 8 5.923665 ACTAGCGATTTAACCGTTTTTCTG 58.076 37.500 0.00 0.00 0.00 3.02
8 9 5.697633 TGACTAGCGATTTAACCGTTTTTCT 59.302 36.000 0.00 0.00 0.00 2.52
9 10 5.787062 GTGACTAGCGATTTAACCGTTTTTC 59.213 40.000 0.00 0.00 0.00 2.29
10 11 5.334337 GGTGACTAGCGATTTAACCGTTTTT 60.334 40.000 0.00 0.00 0.00 1.94
11 12 4.152938 GGTGACTAGCGATTTAACCGTTTT 59.847 41.667 0.00 0.00 0.00 2.43
12 13 3.681417 GGTGACTAGCGATTTAACCGTTT 59.319 43.478 0.00 0.00 0.00 3.60
13 14 3.256558 GGTGACTAGCGATTTAACCGTT 58.743 45.455 0.00 0.00 0.00 4.44
14 15 2.231964 TGGTGACTAGCGATTTAACCGT 59.768 45.455 0.00 0.00 0.00 4.83
15 16 2.601763 GTGGTGACTAGCGATTTAACCG 59.398 50.000 0.00 0.00 0.00 4.44
16 17 2.601763 CGTGGTGACTAGCGATTTAACC 59.398 50.000 0.00 0.00 0.00 2.85
17 18 2.601763 CCGTGGTGACTAGCGATTTAAC 59.398 50.000 0.00 0.00 0.00 2.01
18 19 2.417651 CCCGTGGTGACTAGCGATTTAA 60.418 50.000 0.00 0.00 0.00 1.52
19 20 1.135527 CCCGTGGTGACTAGCGATTTA 59.864 52.381 0.00 0.00 0.00 1.40
20 21 0.108329 CCCGTGGTGACTAGCGATTT 60.108 55.000 0.00 0.00 0.00 2.17
21 22 1.255667 ACCCGTGGTGACTAGCGATT 61.256 55.000 0.00 0.00 32.98 3.34
22 23 1.255667 AACCCGTGGTGACTAGCGAT 61.256 55.000 0.00 0.00 35.34 4.58
23 24 1.466025 AAACCCGTGGTGACTAGCGA 61.466 55.000 0.00 0.00 35.34 4.93
24 25 1.005394 AAACCCGTGGTGACTAGCG 60.005 57.895 0.00 0.00 35.34 4.26
25 26 0.953960 CCAAACCCGTGGTGACTAGC 60.954 60.000 0.00 0.00 35.34 3.42
26 27 0.321298 CCCAAACCCGTGGTGACTAG 60.321 60.000 0.00 0.00 35.34 2.57
27 28 1.055551 ACCCAAACCCGTGGTGACTA 61.056 55.000 0.00 0.00 35.34 2.59
28 29 1.928714 AACCCAAACCCGTGGTGACT 61.929 55.000 0.00 0.00 35.34 3.41
29 30 1.038681 AAACCCAAACCCGTGGTGAC 61.039 55.000 0.00 0.00 35.34 3.67
30 31 0.324460 AAAACCCAAACCCGTGGTGA 60.324 50.000 0.00 0.00 35.34 4.02
31 32 0.537653 AAAAACCCAAACCCGTGGTG 59.462 50.000 0.00 0.00 35.34 4.17
32 33 2.993977 AAAAACCCAAACCCGTGGT 58.006 47.368 0.00 0.00 36.90 4.16
47 48 3.928343 CGGTCCGCTGTTTCAAAAA 57.072 47.368 0.00 0.00 0.00 1.94
59 60 1.977594 GCTACCAAACATGCGGTCCG 61.978 60.000 6.99 6.99 36.69 4.79
60 61 0.676782 AGCTACCAAACATGCGGTCC 60.677 55.000 5.39 0.11 36.69 4.46
61 62 1.165270 AAGCTACCAAACATGCGGTC 58.835 50.000 5.39 0.00 36.69 4.79
62 63 1.616159 AAAGCTACCAAACATGCGGT 58.384 45.000 7.19 7.19 39.41 5.68
63 64 2.723124 AAAAGCTACCAAACATGCGG 57.277 45.000 0.00 0.00 0.00 5.69
64 65 3.637432 TCAAAAAGCTACCAAACATGCG 58.363 40.909 0.00 0.00 0.00 4.73
65 66 4.870363 TCTCAAAAAGCTACCAAACATGC 58.130 39.130 0.00 0.00 0.00 4.06
66 67 7.769272 TTTTCTCAAAAAGCTACCAAACATG 57.231 32.000 0.00 0.00 30.90 3.21
67 68 8.962884 ATTTTTCTCAAAAAGCTACCAAACAT 57.037 26.923 0.00 0.00 42.97 2.71
68 69 8.785329 AATTTTTCTCAAAAAGCTACCAAACA 57.215 26.923 0.00 0.00 42.97 2.83
108 109 9.465199 ACTAGTTTACAGGTTAAGGTTTCAAAA 57.535 29.630 0.00 0.00 0.00 2.44
110 111 9.768662 CTACTAGTTTACAGGTTAAGGTTTCAA 57.231 33.333 0.00 0.00 0.00 2.69
111 112 8.927411 ACTACTAGTTTACAGGTTAAGGTTTCA 58.073 33.333 0.00 0.00 0.00 2.69
112 113 9.770097 AACTACTAGTTTACAGGTTAAGGTTTC 57.230 33.333 0.00 0.00 34.11 2.78
142 143 8.726988 GCACTTGACAAGTTGGAGTAAATAATA 58.273 33.333 18.27 0.00 40.46 0.98
143 144 7.448469 AGCACTTGACAAGTTGGAGTAAATAAT 59.552 33.333 18.27 0.00 40.46 1.28
144 145 6.770785 AGCACTTGACAAGTTGGAGTAAATAA 59.229 34.615 18.27 0.00 40.46 1.40
145 146 6.296026 AGCACTTGACAAGTTGGAGTAAATA 58.704 36.000 18.27 0.00 40.46 1.40
146 147 5.133221 AGCACTTGACAAGTTGGAGTAAAT 58.867 37.500 18.27 0.00 40.46 1.40
147 148 4.523083 AGCACTTGACAAGTTGGAGTAAA 58.477 39.130 18.27 0.00 40.46 2.01
148 149 4.150897 AGCACTTGACAAGTTGGAGTAA 57.849 40.909 18.27 0.00 40.46 2.24
149 150 3.838244 AGCACTTGACAAGTTGGAGTA 57.162 42.857 18.27 0.00 40.46 2.59
150 151 2.684881 CAAGCACTTGACAAGTTGGAGT 59.315 45.455 18.27 5.50 42.93 3.85
151 152 2.945008 TCAAGCACTTGACAAGTTGGAG 59.055 45.455 18.27 8.41 43.90 3.86
152 153 2.945008 CTCAAGCACTTGACAAGTTGGA 59.055 45.455 18.27 7.44 43.90 3.53
153 154 2.033801 CCTCAAGCACTTGACAAGTTGG 59.966 50.000 18.27 9.47 43.90 3.77
154 155 2.542411 GCCTCAAGCACTTGACAAGTTG 60.542 50.000 18.27 14.08 43.90 3.16
155 156 1.678101 GCCTCAAGCACTTGACAAGTT 59.322 47.619 18.27 2.25 43.90 2.66
156 157 1.312815 GCCTCAAGCACTTGACAAGT 58.687 50.000 15.23 15.23 43.90 3.16
157 158 0.595095 GGCCTCAAGCACTTGACAAG 59.405 55.000 13.77 13.77 43.90 3.16
158 159 0.823356 GGGCCTCAAGCACTTGACAA 60.823 55.000 8.99 0.00 43.83 3.18
159 160 1.228245 GGGCCTCAAGCACTTGACA 60.228 57.895 8.99 0.00 43.83 3.58
160 161 2.328099 CGGGCCTCAAGCACTTGAC 61.328 63.158 8.99 1.20 45.64 3.18
161 162 2.032528 CGGGCCTCAAGCACTTGA 59.967 61.111 12.29 12.29 45.64 3.02
162 163 2.032528 TCGGGCCTCAAGCACTTG 59.967 61.111 0.84 3.94 45.64 3.16
163 164 2.348998 CTCGGGCCTCAAGCACTT 59.651 61.111 0.84 0.00 45.64 3.16
164 165 4.400961 GCTCGGGCCTCAAGCACT 62.401 66.667 16.40 0.00 45.64 4.40
174 175 1.657751 GGTCAAAGATTGGCTCGGGC 61.658 60.000 0.00 0.00 35.12 6.13
175 176 0.322456 TGGTCAAAGATTGGCTCGGG 60.322 55.000 0.00 0.00 35.12 5.14
176 177 1.672881 GATGGTCAAAGATTGGCTCGG 59.327 52.381 0.00 0.00 35.12 4.63
177 178 1.672881 GGATGGTCAAAGATTGGCTCG 59.327 52.381 0.00 0.00 35.12 5.03
178 179 2.948315 GAGGATGGTCAAAGATTGGCTC 59.052 50.000 0.00 0.00 35.12 4.70
179 180 2.357569 GGAGGATGGTCAAAGATTGGCT 60.358 50.000 0.00 0.00 35.12 4.75
180 181 2.027385 GGAGGATGGTCAAAGATTGGC 58.973 52.381 0.00 0.00 33.62 4.52
181 182 2.092968 TCGGAGGATGGTCAAAGATTGG 60.093 50.000 0.00 0.00 0.00 3.16
182 183 3.266510 TCGGAGGATGGTCAAAGATTG 57.733 47.619 0.00 0.00 0.00 2.67
183 184 4.510167 ATTCGGAGGATGGTCAAAGATT 57.490 40.909 0.00 0.00 0.00 2.40
184 185 4.080356 TGAATTCGGAGGATGGTCAAAGAT 60.080 41.667 0.04 0.00 0.00 2.40
185 186 3.263170 TGAATTCGGAGGATGGTCAAAGA 59.737 43.478 0.04 0.00 0.00 2.52
186 187 3.375299 GTGAATTCGGAGGATGGTCAAAG 59.625 47.826 0.04 0.00 0.00 2.77
187 188 3.343617 GTGAATTCGGAGGATGGTCAAA 58.656 45.455 0.04 0.00 0.00 2.69
188 189 2.676750 CGTGAATTCGGAGGATGGTCAA 60.677 50.000 0.04 0.00 0.00 3.18
189 190 1.134818 CGTGAATTCGGAGGATGGTCA 60.135 52.381 0.04 0.00 0.00 4.02
190 191 1.571919 CGTGAATTCGGAGGATGGTC 58.428 55.000 0.04 0.00 0.00 4.02
191 192 3.760693 CGTGAATTCGGAGGATGGT 57.239 52.632 0.04 0.00 0.00 3.55
199 200 3.556625 TTCACGCCGTGAATTCGG 58.443 55.556 27.27 0.72 45.88 4.30
209 210 1.135939 GTAAATGCCGGTTCACGCC 59.864 57.895 1.90 0.00 42.52 5.68
210 211 1.225908 CGTAAATGCCGGTTCACGC 60.226 57.895 1.90 0.00 42.52 5.34
211 212 1.015085 TCCGTAAATGCCGGTTCACG 61.015 55.000 1.90 6.28 45.63 4.35
212 213 1.135888 GTTCCGTAAATGCCGGTTCAC 60.136 52.381 1.90 0.00 45.63 3.18
213 214 1.158434 GTTCCGTAAATGCCGGTTCA 58.842 50.000 1.90 0.00 45.63 3.18
214 215 1.129811 CTGTTCCGTAAATGCCGGTTC 59.870 52.381 1.90 0.00 45.63 3.62
215 216 1.161843 CTGTTCCGTAAATGCCGGTT 58.838 50.000 1.90 0.00 45.63 4.44
216 217 0.675522 CCTGTTCCGTAAATGCCGGT 60.676 55.000 1.90 0.00 45.63 5.28
217 218 0.675522 ACCTGTTCCGTAAATGCCGG 60.676 55.000 0.00 0.00 46.83 6.13
218 219 0.446222 CACCTGTTCCGTAAATGCCG 59.554 55.000 0.00 0.00 0.00 5.69
219 220 1.737793 CTCACCTGTTCCGTAAATGCC 59.262 52.381 0.00 0.00 0.00 4.40
220 221 2.415512 GACTCACCTGTTCCGTAAATGC 59.584 50.000 0.00 0.00 0.00 3.56
221 222 3.926616 AGACTCACCTGTTCCGTAAATG 58.073 45.455 0.00 0.00 0.00 2.32
222 223 3.576982 TGAGACTCACCTGTTCCGTAAAT 59.423 43.478 0.00 0.00 0.00 1.40
223 224 2.960384 TGAGACTCACCTGTTCCGTAAA 59.040 45.455 0.00 0.00 0.00 2.01
224 225 2.589720 TGAGACTCACCTGTTCCGTAA 58.410 47.619 0.00 0.00 0.00 3.18
225 226 2.281539 TGAGACTCACCTGTTCCGTA 57.718 50.000 0.00 0.00 0.00 4.02
226 227 1.633774 ATGAGACTCACCTGTTCCGT 58.366 50.000 7.47 0.00 0.00 4.69
227 228 2.341257 CAATGAGACTCACCTGTTCCG 58.659 52.381 7.47 0.00 0.00 4.30
228 229 2.704572 CCAATGAGACTCACCTGTTCC 58.295 52.381 7.47 0.00 0.00 3.62
229 230 2.079925 GCCAATGAGACTCACCTGTTC 58.920 52.381 7.47 0.00 0.00 3.18
230 231 1.271597 GGCCAATGAGACTCACCTGTT 60.272 52.381 7.47 0.00 0.00 3.16
231 232 0.326264 GGCCAATGAGACTCACCTGT 59.674 55.000 7.47 0.00 0.00 4.00
232 233 0.617413 AGGCCAATGAGACTCACCTG 59.383 55.000 7.47 8.25 0.00 4.00
233 234 0.908198 GAGGCCAATGAGACTCACCT 59.092 55.000 7.47 9.68 0.00 4.00
234 235 0.908198 AGAGGCCAATGAGACTCACC 59.092 55.000 7.47 4.45 32.52 4.02
235 236 2.354259 CAAGAGGCCAATGAGACTCAC 58.646 52.381 7.47 0.00 32.52 3.51
236 237 1.339438 GCAAGAGGCCAATGAGACTCA 60.339 52.381 7.80 7.80 36.11 3.41
237 238 1.339438 TGCAAGAGGCCAATGAGACTC 60.339 52.381 5.01 0.00 43.89 3.36
238 239 0.694771 TGCAAGAGGCCAATGAGACT 59.305 50.000 5.01 0.00 43.89 3.24
239 240 0.807496 GTGCAAGAGGCCAATGAGAC 59.193 55.000 5.01 0.00 43.89 3.36
240 241 0.674581 CGTGCAAGAGGCCAATGAGA 60.675 55.000 5.01 0.00 43.89 3.27
241 242 0.957395 ACGTGCAAGAGGCCAATGAG 60.957 55.000 5.01 0.00 43.89 2.90
242 243 1.073025 ACGTGCAAGAGGCCAATGA 59.927 52.632 5.01 0.00 43.89 2.57
243 244 1.210931 CACGTGCAAGAGGCCAATG 59.789 57.895 5.01 1.07 43.89 2.82
244 245 1.973281 CCACGTGCAAGAGGCCAAT 60.973 57.895 10.91 0.00 43.89 3.16
245 246 2.594303 CCACGTGCAAGAGGCCAA 60.594 61.111 10.91 0.00 43.89 4.52
246 247 3.872603 ACCACGTGCAAGAGGCCA 61.873 61.111 15.47 0.00 43.89 5.36
247 248 3.357079 CACCACGTGCAAGAGGCC 61.357 66.667 15.47 0.00 43.89 5.19
256 257 2.591429 TGGCTCTTGCACCACGTG 60.591 61.111 9.08 9.08 41.91 4.49
257 258 2.591715 GTGGCTCTTGCACCACGT 60.592 61.111 8.32 0.00 46.32 4.49
260 261 0.961019 GAATTGTGGCTCTTGCACCA 59.039 50.000 0.00 0.00 41.91 4.17
261 262 1.200948 GAGAATTGTGGCTCTTGCACC 59.799 52.381 0.00 0.00 41.91 5.01
262 263 1.200948 GGAGAATTGTGGCTCTTGCAC 59.799 52.381 0.00 0.00 41.91 4.57
263 264 1.538047 GGAGAATTGTGGCTCTTGCA 58.462 50.000 0.00 0.00 41.91 4.08
264 265 0.813821 GGGAGAATTGTGGCTCTTGC 59.186 55.000 0.00 0.00 38.76 4.01
265 266 2.205022 TGGGAGAATTGTGGCTCTTG 57.795 50.000 0.00 0.00 0.00 3.02
266 267 2.579860 AGATGGGAGAATTGTGGCTCTT 59.420 45.455 0.00 0.00 0.00 2.85
267 268 2.203584 AGATGGGAGAATTGTGGCTCT 58.796 47.619 0.00 0.00 0.00 4.09
268 269 2.725221 AGATGGGAGAATTGTGGCTC 57.275 50.000 0.00 0.00 0.00 4.70
269 270 4.803329 AATAGATGGGAGAATTGTGGCT 57.197 40.909 0.00 0.00 0.00 4.75
270 271 5.859205 AAAATAGATGGGAGAATTGTGGC 57.141 39.130 0.00 0.00 0.00 5.01
299 300 1.101635 TCTGGACGGCGGATAGACTG 61.102 60.000 13.24 0.00 0.00 3.51
300 301 0.178987 ATCTGGACGGCGGATAGACT 60.179 55.000 13.24 0.00 0.00 3.24
301 302 1.199558 GTATCTGGACGGCGGATAGAC 59.800 57.143 13.24 0.00 0.00 2.59
302 303 1.531423 GTATCTGGACGGCGGATAGA 58.469 55.000 13.24 11.69 0.00 1.98
303 304 0.168348 CGTATCTGGACGGCGGATAG 59.832 60.000 13.24 6.01 39.19 2.08
304 305 2.250646 CGTATCTGGACGGCGGATA 58.749 57.895 13.24 5.64 39.19 2.59
305 306 3.039988 CGTATCTGGACGGCGGAT 58.960 61.111 13.24 6.73 39.19 4.18
312 313 5.107607 CCGCACAAATAATACGTATCTGGAC 60.108 44.000 8.86 1.29 0.00 4.02
313 314 4.986034 CCGCACAAATAATACGTATCTGGA 59.014 41.667 8.86 0.00 0.00 3.86
314 315 4.377022 GCCGCACAAATAATACGTATCTGG 60.377 45.833 8.86 0.30 0.00 3.86
315 316 4.447724 AGCCGCACAAATAATACGTATCTG 59.552 41.667 8.86 6.91 0.00 2.90
316 317 4.628074 AGCCGCACAAATAATACGTATCT 58.372 39.130 8.86 2.28 0.00 1.98
317 318 4.446385 TGAGCCGCACAAATAATACGTATC 59.554 41.667 8.86 0.00 0.00 2.24
318 319 4.210537 GTGAGCCGCACAAATAATACGTAT 59.789 41.667 1.14 1.14 46.91 3.06
319 320 3.552699 GTGAGCCGCACAAATAATACGTA 59.447 43.478 0.00 0.00 46.91 3.57
320 321 2.350498 GTGAGCCGCACAAATAATACGT 59.650 45.455 0.00 0.00 46.91 3.57
321 322 2.969055 GTGAGCCGCACAAATAATACG 58.031 47.619 0.00 0.00 46.91 3.06
362 363 1.172180 TGAGGCCCAAACTGAAAGCG 61.172 55.000 0.00 0.00 37.60 4.68
371 372 0.473694 TCCACTCTCTGAGGCCCAAA 60.474 55.000 0.00 0.00 33.35 3.28
391 392 2.097038 GTGCGTACTGCTGCTCCTG 61.097 63.158 0.00 0.00 46.63 3.86
392 393 2.262915 GTGCGTACTGCTGCTCCT 59.737 61.111 0.00 0.00 46.63 3.69
393 394 2.815647 GGTGCGTACTGCTGCTCC 60.816 66.667 3.01 4.07 46.63 4.70
395 396 2.047844 CTGGTGCGTACTGCTGCT 60.048 61.111 3.01 0.00 46.63 4.24
396 397 3.793144 GCTGGTGCGTACTGCTGC 61.793 66.667 3.01 0.00 46.63 5.25
397 398 2.047844 AGCTGGTGCGTACTGCTG 60.048 61.111 19.08 3.82 46.63 4.41
400 401 1.446792 CCTGAGCTGGTGCGTACTG 60.447 63.158 3.01 0.00 45.42 2.74
401 402 2.973899 CCTGAGCTGGTGCGTACT 59.026 61.111 3.01 0.00 45.42 2.73
402 403 2.815647 GCCTGAGCTGGTGCGTAC 60.816 66.667 0.00 0.00 45.42 3.67
413 414 1.447489 CGTTGGAGCTGAGCCTGAG 60.447 63.158 0.00 0.00 0.00 3.35
414 415 2.659016 CGTTGGAGCTGAGCCTGA 59.341 61.111 0.00 0.00 0.00 3.86
415 416 2.435586 CCGTTGGAGCTGAGCCTG 60.436 66.667 0.00 0.00 0.00 4.85
416 417 4.400961 GCCGTTGGAGCTGAGCCT 62.401 66.667 0.00 0.00 0.00 4.58
418 419 4.742201 TCGCCGTTGGAGCTGAGC 62.742 66.667 0.00 0.00 0.00 4.26
420 421 1.667830 CTTTCGCCGTTGGAGCTGA 60.668 57.895 0.00 0.00 0.00 4.26
421 422 2.680913 CCTTTCGCCGTTGGAGCTG 61.681 63.158 0.00 0.00 0.00 4.24
422 423 2.358737 CCTTTCGCCGTTGGAGCT 60.359 61.111 0.00 0.00 0.00 4.09
423 424 4.103103 GCCTTTCGCCGTTGGAGC 62.103 66.667 0.00 0.00 0.00 4.70
424 425 2.668212 TGCCTTTCGCCGTTGGAG 60.668 61.111 0.00 0.00 36.24 3.86
425 426 2.975799 GTGCCTTTCGCCGTTGGA 60.976 61.111 0.00 0.00 36.24 3.53
426 427 2.840066 TTGTGCCTTTCGCCGTTGG 61.840 57.895 0.00 0.00 36.24 3.77
427 428 1.657181 GTTGTGCCTTTCGCCGTTG 60.657 57.895 0.00 0.00 36.24 4.10
428 429 1.658686 TTGTTGTGCCTTTCGCCGTT 61.659 50.000 0.00 0.00 36.24 4.44
429 430 1.452145 ATTGTTGTGCCTTTCGCCGT 61.452 50.000 0.00 0.00 36.24 5.68
430 431 0.729140 GATTGTTGTGCCTTTCGCCG 60.729 55.000 0.00 0.00 36.24 6.46
431 432 0.729140 CGATTGTTGTGCCTTTCGCC 60.729 55.000 0.00 0.00 36.24 5.54
432 433 0.729140 CCGATTGTTGTGCCTTTCGC 60.729 55.000 0.00 0.00 38.31 4.70
433 434 0.871722 TCCGATTGTTGTGCCTTTCG 59.128 50.000 0.00 0.00 0.00 3.46
434 435 2.151202 TCTCCGATTGTTGTGCCTTTC 58.849 47.619 0.00 0.00 0.00 2.62
435 436 2.154462 CTCTCCGATTGTTGTGCCTTT 58.846 47.619 0.00 0.00 0.00 3.11
436 437 1.611673 CCTCTCCGATTGTTGTGCCTT 60.612 52.381 0.00 0.00 0.00 4.35
437 438 0.036010 CCTCTCCGATTGTTGTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
438 439 1.648467 GCCTCTCCGATTGTTGTGCC 61.648 60.000 0.00 0.00 0.00 5.01
439 440 0.674895 AGCCTCTCCGATTGTTGTGC 60.675 55.000 0.00 0.00 0.00 4.57
440 441 1.081892 CAGCCTCTCCGATTGTTGTG 58.918 55.000 0.00 0.00 0.00 3.33
441 442 0.976641 TCAGCCTCTCCGATTGTTGT 59.023 50.000 0.00 0.00 0.00 3.32
442 443 1.734465 GTTCAGCCTCTCCGATTGTTG 59.266 52.381 0.00 0.00 0.00 3.33
443 444 1.347707 TGTTCAGCCTCTCCGATTGTT 59.652 47.619 0.00 0.00 0.00 2.83
444 445 0.976641 TGTTCAGCCTCTCCGATTGT 59.023 50.000 0.00 0.00 0.00 2.71
445 446 1.066573 ACTGTTCAGCCTCTCCGATTG 60.067 52.381 0.00 0.00 0.00 2.67
446 447 1.205893 GACTGTTCAGCCTCTCCGATT 59.794 52.381 0.00 0.00 0.00 3.34
447 448 0.820871 GACTGTTCAGCCTCTCCGAT 59.179 55.000 0.00 0.00 0.00 4.18
448 449 1.587043 CGACTGTTCAGCCTCTCCGA 61.587 60.000 0.00 0.00 0.00 4.55
449 450 1.153939 CGACTGTTCAGCCTCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
450 451 1.216710 CCGACTGTTCAGCCTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
451 452 0.603569 TTCCGACTGTTCAGCCTCTC 59.396 55.000 0.00 0.00 0.00 3.20
452 453 1.048601 TTTCCGACTGTTCAGCCTCT 58.951 50.000 0.00 0.00 0.00 3.69
453 454 1.878953 TTTTCCGACTGTTCAGCCTC 58.121 50.000 0.00 0.00 0.00 4.70
454 455 2.341846 TTTTTCCGACTGTTCAGCCT 57.658 45.000 0.00 0.00 0.00 4.58
504 508 3.838244 ATATGGTGCCACGTCTTACAT 57.162 42.857 0.00 0.00 0.00 2.29
513 2236 4.119136 GCCACATTTTTATATGGTGCCAC 58.881 43.478 0.00 0.00 34.50 5.01
517 2240 6.183360 ACGTACAGCCACATTTTTATATGGTG 60.183 38.462 0.00 0.00 34.50 4.17
530 2253 2.617308 GCTAGATCTACGTACAGCCACA 59.383 50.000 0.00 0.00 0.00 4.17
531 2254 2.617308 TGCTAGATCTACGTACAGCCAC 59.383 50.000 9.80 0.00 0.00 5.01
534 2257 3.810941 ACTCTGCTAGATCTACGTACAGC 59.189 47.826 0.00 1.95 0.00 4.40
535 2258 5.051153 TGACTCTGCTAGATCTACGTACAG 58.949 45.833 0.00 4.91 0.00 2.74
538 2261 6.017026 CCAAATGACTCTGCTAGATCTACGTA 60.017 42.308 0.00 0.00 0.00 3.57
540 2263 5.218885 CCAAATGACTCTGCTAGATCTACG 58.781 45.833 0.00 0.00 0.00 3.51
541 2264 6.155475 ACCAAATGACTCTGCTAGATCTAC 57.845 41.667 0.00 0.00 0.00 2.59
542 2265 6.407412 CCAACCAAATGACTCTGCTAGATCTA 60.407 42.308 1.69 1.69 0.00 1.98
548 2862 2.040278 AGCCAACCAAATGACTCTGCTA 59.960 45.455 0.00 0.00 0.00 3.49
551 2865 1.542915 CCAGCCAACCAAATGACTCTG 59.457 52.381 0.00 0.00 0.00 3.35
553 2867 1.909700 TCCAGCCAACCAAATGACTC 58.090 50.000 0.00 0.00 0.00 3.36
557 2871 2.564062 AGTTCATCCAGCCAACCAAATG 59.436 45.455 0.00 0.00 0.00 2.32
568 2882 1.738350 CTCAGCAAGCAGTTCATCCAG 59.262 52.381 0.00 0.00 0.00 3.86
572 2886 1.303799 CGCCTCAGCAAGCAGTTCAT 61.304 55.000 0.00 0.00 39.83 2.57
575 2889 2.670934 CCGCCTCAGCAAGCAGTT 60.671 61.111 0.00 0.00 39.83 3.16
576 2890 3.182590 TTCCGCCTCAGCAAGCAGT 62.183 57.895 0.00 0.00 39.83 4.40
577 2891 2.359107 TTCCGCCTCAGCAAGCAG 60.359 61.111 0.00 0.00 39.83 4.24
578 2892 2.359107 CTTCCGCCTCAGCAAGCA 60.359 61.111 0.00 0.00 39.83 3.91
579 2893 1.028868 ATTCTTCCGCCTCAGCAAGC 61.029 55.000 0.00 0.00 39.83 4.01
580 2894 1.131883 CAATTCTTCCGCCTCAGCAAG 59.868 52.381 0.00 0.00 39.83 4.01
581 2895 1.167851 CAATTCTTCCGCCTCAGCAA 58.832 50.000 0.00 0.00 39.83 3.91
584 2898 1.012841 GAGCAATTCTTCCGCCTCAG 58.987 55.000 0.00 0.00 0.00 3.35
585 2899 0.740868 CGAGCAATTCTTCCGCCTCA 60.741 55.000 0.00 0.00 0.00 3.86
587 2901 0.741221 GACGAGCAATTCTTCCGCCT 60.741 55.000 0.00 0.00 0.00 5.52
588 2902 1.716172 GACGAGCAATTCTTCCGCC 59.284 57.895 0.00 0.00 0.00 6.13
589 2903 1.345176 CGACGAGCAATTCTTCCGC 59.655 57.895 0.00 0.00 0.00 5.54
591 2905 0.095417 GCACGACGAGCAATTCTTCC 59.905 55.000 12.54 0.00 0.00 3.46
592 2906 0.790207 TGCACGACGAGCAATTCTTC 59.210 50.000 17.66 0.00 39.39 2.87
593 2907 0.792640 CTGCACGACGAGCAATTCTT 59.207 50.000 20.13 0.00 42.17 2.52
594 2908 0.319900 ACTGCACGACGAGCAATTCT 60.320 50.000 20.13 1.62 42.17 2.40
595 2909 0.179240 CACTGCACGACGAGCAATTC 60.179 55.000 20.13 0.00 42.17 2.17
596 2910 1.862123 CACTGCACGACGAGCAATT 59.138 52.632 20.13 8.15 42.17 2.32
597 2911 2.671177 GCACTGCACGACGAGCAAT 61.671 57.895 20.13 8.49 42.17 3.56
599 2913 4.284860 AGCACTGCACGACGAGCA 62.285 61.111 18.75 18.75 40.19 4.26
600 2914 3.474034 GAGCACTGCACGACGAGC 61.474 66.667 10.50 10.50 0.00 5.03
605 2919 4.032987 TACGCGAGCACTGCACGA 62.033 61.111 22.78 1.11 44.57 4.35
606 2920 3.827784 GTACGCGAGCACTGCACG 61.828 66.667 15.93 15.54 44.60 5.34
607 2921 3.827784 CGTACGCGAGCACTGCAC 61.828 66.667 15.93 0.00 41.33 4.57
608 2922 2.968639 TACGTACGCGAGCACTGCA 61.969 57.895 15.93 0.00 42.00 4.41
609 2923 2.202388 TACGTACGCGAGCACTGC 60.202 61.111 15.93 0.00 42.00 4.40
610 2924 2.206487 CGTACGTACGCGAGCACTG 61.206 63.158 32.36 6.15 43.14 3.66
611 2925 2.097160 CGTACGTACGCGAGCACT 59.903 61.111 32.36 0.00 43.14 4.40
620 2934 4.670606 CCGTAGGCACGTACGTAC 57.329 61.111 22.34 16.05 46.14 3.67
631 2945 2.125106 GCCTGTTGCTCCCGTAGG 60.125 66.667 0.00 0.00 42.89 3.18
633 2947 2.521451 TTGGCCTGTTGCTCCCGTA 61.521 57.895 3.32 0.00 40.92 4.02
634 2948 3.884774 TTGGCCTGTTGCTCCCGT 61.885 61.111 3.32 0.00 40.92 5.28
637 2951 1.109323 AACTGTTGGCCTGTTGCTCC 61.109 55.000 3.32 0.00 40.92 4.70
638 2952 1.604604 TAACTGTTGGCCTGTTGCTC 58.395 50.000 3.32 0.00 40.92 4.26
641 2955 1.599419 GCGTTAACTGTTGGCCTGTTG 60.599 52.381 3.32 0.00 36.68 3.33
642 2956 0.666374 GCGTTAACTGTTGGCCTGTT 59.334 50.000 3.32 6.76 38.57 3.16
644 2958 0.238289 CAGCGTTAACTGTTGGCCTG 59.762 55.000 3.32 1.27 32.78 4.85
645 2959 2.629002 CAGCGTTAACTGTTGGCCT 58.371 52.632 3.32 0.00 32.78 5.19
672 3023 1.811266 CTGTTCGCTGACCCCATCG 60.811 63.158 0.00 0.00 33.63 3.84
673 3024 0.179000 ATCTGTTCGCTGACCCCATC 59.821 55.000 0.00 0.00 0.00 3.51
674 3025 0.107508 CATCTGTTCGCTGACCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
675 3026 1.191489 TCATCTGTTCGCTGACCCCA 61.191 55.000 0.00 0.00 0.00 4.96
676 3027 0.036388 TTCATCTGTTCGCTGACCCC 60.036 55.000 0.00 0.00 0.00 4.95
677 3028 1.464997 GTTTCATCTGTTCGCTGACCC 59.535 52.381 0.00 0.00 0.00 4.46
680 3031 2.300152 AGAGGTTTCATCTGTTCGCTGA 59.700 45.455 0.00 0.00 0.00 4.26
681 3032 2.414481 CAGAGGTTTCATCTGTTCGCTG 59.586 50.000 3.69 0.00 39.48 5.18
682 3033 2.300152 TCAGAGGTTTCATCTGTTCGCT 59.700 45.455 10.39 0.00 43.79 4.93
683 3034 2.688507 TCAGAGGTTTCATCTGTTCGC 58.311 47.619 10.39 0.00 43.79 4.70
684 3035 3.433615 GGTTCAGAGGTTTCATCTGTTCG 59.566 47.826 10.39 0.00 43.79 3.95
685 3036 4.646572 AGGTTCAGAGGTTTCATCTGTTC 58.353 43.478 10.39 5.96 43.79 3.18
686 3037 4.713792 AGGTTCAGAGGTTTCATCTGTT 57.286 40.909 10.39 0.00 43.79 3.16
711 3068 1.280421 CAGGTTCAGAGAGAAAGGGGG 59.720 57.143 0.00 0.00 38.13 5.40
713 3070 3.326297 AGTTCAGGTTCAGAGAGAAAGGG 59.674 47.826 0.00 0.00 38.13 3.95
716 3073 3.005897 CGGAGTTCAGGTTCAGAGAGAAA 59.994 47.826 0.00 0.00 38.13 2.52
736 3093 3.737172 CAGAAAGCAACCGGCCGG 61.737 66.667 42.17 42.17 46.50 6.13
737 3094 2.966309 GACAGAAAGCAACCGGCCG 61.966 63.158 21.04 21.04 46.50 6.13
738 3095 1.578206 GAGACAGAAAGCAACCGGCC 61.578 60.000 0.00 0.00 46.50 6.13
739 3096 0.603975 AGAGACAGAAAGCAACCGGC 60.604 55.000 0.00 0.00 45.30 6.13
763 3120 3.635373 TGCTACGATCCGATCTTAGGTTT 59.365 43.478 18.66 0.00 33.22 3.27
769 3126 2.577700 AGAGTGCTACGATCCGATCTT 58.422 47.619 6.81 0.00 0.00 2.40
770 3127 2.264005 AGAGTGCTACGATCCGATCT 57.736 50.000 6.81 0.00 0.00 2.75
772 3129 2.783828 CAAGAGTGCTACGATCCGAT 57.216 50.000 0.00 0.00 0.00 4.18
823 3224 2.320587 CCAGACTGCACCTGCGTTC 61.321 63.158 0.00 0.00 45.83 3.95
824 3225 2.281070 CCAGACTGCACCTGCGTT 60.281 61.111 0.00 0.00 45.83 4.84
825 3226 2.996168 GAACCAGACTGCACCTGCGT 62.996 60.000 0.00 3.75 45.83 5.24
918 3319 1.229241 TGTATGGGGGTGTCCGACA 60.229 57.895 0.00 0.00 36.01 4.35
964 3365 4.741239 TGGAGGGGAGGCTGGGTC 62.741 72.222 0.00 0.00 0.00 4.46
1245 3678 1.002011 GAACCCCTCCTTGGTGAGC 60.002 63.158 0.00 0.00 35.88 4.26
1253 3686 2.593956 GCGTTCTGGAACCCCTCCT 61.594 63.158 7.74 0.00 45.64 3.69
1339 3772 3.976701 ATGCTTTGGTCGAGGGGCG 62.977 63.158 0.00 0.00 42.69 6.13
1352 3785 1.273606 CGATCGAGGGTATCCATGCTT 59.726 52.381 10.26 0.00 34.83 3.91
1364 3797 3.905705 GATCAGCCGGCGATCGAGG 62.906 68.421 31.03 21.29 42.43 4.63
1371 3804 2.279784 GAAGGAGATCAGCCGGCG 60.280 66.667 23.20 16.49 0.00 6.46
1372 3805 2.110006 GGAAGGAGATCAGCCGGC 59.890 66.667 21.89 21.89 0.00 6.13
1373 3806 1.341156 AAGGGAAGGAGATCAGCCGG 61.341 60.000 0.00 0.00 0.00 6.13
1403 3836 3.902881 TCATCTTCTTCTTCCTCCAGC 57.097 47.619 0.00 0.00 0.00 4.85
1407 3840 9.623350 CAAAAGAAATTCATCTTCTTCTTCCTC 57.377 33.333 0.00 0.00 41.24 3.71
1408 3841 8.583296 CCAAAAGAAATTCATCTTCTTCTTCCT 58.417 33.333 0.00 0.00 41.24 3.36
1425 3858 9.947433 AATTCATATCAGCAAATCCAAAAGAAA 57.053 25.926 0.00 0.00 0.00 2.52
1426 3859 9.947433 AAATTCATATCAGCAAATCCAAAAGAA 57.053 25.926 0.00 0.00 0.00 2.52
1427 3860 9.590451 GAAATTCATATCAGCAAATCCAAAAGA 57.410 29.630 0.00 0.00 0.00 2.52
1428 3861 8.537223 CGAAATTCATATCAGCAAATCCAAAAG 58.463 33.333 0.00 0.00 0.00 2.27
1429 3862 8.034215 ACGAAATTCATATCAGCAAATCCAAAA 58.966 29.630 0.00 0.00 0.00 2.44
1430 3863 7.546358 ACGAAATTCATATCAGCAAATCCAAA 58.454 30.769 0.00 0.00 0.00 3.28
1431 3864 7.099266 ACGAAATTCATATCAGCAAATCCAA 57.901 32.000 0.00 0.00 0.00 3.53
1432 3865 6.698008 ACGAAATTCATATCAGCAAATCCA 57.302 33.333 0.00 0.00 0.00 3.41
1433 3866 6.074676 GCAACGAAATTCATATCAGCAAATCC 60.075 38.462 0.00 0.00 0.00 3.01
1434 3867 6.473131 TGCAACGAAATTCATATCAGCAAATC 59.527 34.615 0.00 0.00 0.00 2.17
1435 3868 6.331845 TGCAACGAAATTCATATCAGCAAAT 58.668 32.000 0.00 0.00 0.00 2.32
1486 3922 0.251165 CACCCCAGGAAATCGTTGGT 60.251 55.000 0.00 0.00 0.00 3.67
1553 3989 1.594564 GCCGCCTCCTTATCGGAAC 60.595 63.158 3.91 0.00 45.53 3.62
1573 4009 2.806019 CGGAATCTGCCATCTTCTCCTG 60.806 54.545 0.00 0.00 0.00 3.86
1585 4021 1.656652 ACTACACATGCGGAATCTGC 58.343 50.000 7.19 7.19 0.00 4.26
1590 4026 2.753055 TGCTAACTACACATGCGGAA 57.247 45.000 0.00 0.00 0.00 4.30
1632 4117 4.371681 AGTCCACATTGGGGAAGTACTAT 58.628 43.478 9.81 0.00 38.32 2.12
1633 4118 3.798515 AGTCCACATTGGGGAAGTACTA 58.201 45.455 9.81 0.00 38.32 1.82
1634 4119 2.632537 AGTCCACATTGGGGAAGTACT 58.367 47.619 9.81 0.00 38.32 2.73
1665 4150 9.988815 ATTTACTGAATTCTACGAGCATAGATT 57.011 29.630 7.05 0.00 31.25 2.40
1671 4156 5.515270 CGACATTTACTGAATTCTACGAGCA 59.485 40.000 7.05 0.00 0.00 4.26
1673 4158 6.196724 GGTCGACATTTACTGAATTCTACGAG 59.803 42.308 18.91 0.00 0.00 4.18
1688 4173 1.855513 TGAAACGACGGTCGACATTT 58.144 45.000 34.40 23.80 43.74 2.32
1717 4203 4.092091 CCTTTACTGCATCTCTGAACGAAC 59.908 45.833 0.00 0.00 0.00 3.95
1744 4230 7.219535 CACATGCAAACTGAAATAGAGTTATGC 59.780 37.037 0.00 0.00 37.63 3.14
1753 4239 6.172630 TCTCTAGCACATGCAAACTGAAATA 58.827 36.000 6.64 0.00 45.16 1.40
1791 4277 3.245048 CCAAACACGCAAGAAAATGAACC 59.755 43.478 0.00 0.00 43.62 3.62
1804 4290 1.565305 TTTGCATCAACCAAACACGC 58.435 45.000 0.00 0.00 0.00 5.34
1842 4328 1.623811 AGTACAGAATCCCACGCAGTT 59.376 47.619 0.00 0.00 41.61 3.16
1864 4350 7.700234 GCAATACAATTTCGATCAACCATAACA 59.300 33.333 0.00 0.00 0.00 2.41
1936 4513 6.097915 TGTTTTTGTTTGACAACTTGGGTA 57.902 33.333 0.00 0.00 37.90 3.69
1939 4516 6.672836 GCTGATGTTTTTGTTTGACAACTTGG 60.673 38.462 0.00 0.00 37.90 3.61
1946 4523 5.793026 TTTGGCTGATGTTTTTGTTTGAC 57.207 34.783 0.00 0.00 0.00 3.18
1947 4524 7.254727 GCTTATTTGGCTGATGTTTTTGTTTGA 60.255 33.333 0.00 0.00 0.00 2.69
1963 4540 8.716646 AATATTAACTTGTTGGCTTATTTGGC 57.283 30.769 0.00 0.00 0.00 4.52
2051 4628 9.787532 CCAACAAGATCGTTTTGATTACATAAT 57.212 29.630 8.82 0.00 37.47 1.28
2122 4699 6.183360 CGGTTGATGATAGCTGAATTTGTCTT 60.183 38.462 0.00 0.00 0.00 3.01
2211 4788 2.429610 CAATGCTCTTGCCCATAAGCTT 59.570 45.455 3.48 3.48 38.71 3.74
2661 5238 1.067142 TGGACTGTCAGGCAATCGTAC 60.067 52.381 8.27 0.00 0.00 3.67
2695 5272 5.946972 GCTAGCAGAATACTATAGAGGTCCA 59.053 44.000 10.63 0.00 0.00 4.02
2761 5338 3.607370 GACCCCCAGCCGAACTGTC 62.607 68.421 4.95 0.00 45.68 3.51
2881 5458 4.160439 CCAGTAGGAGATGTTGTGAAGCTA 59.840 45.833 0.00 0.00 36.89 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.