Multiple sequence alignment - TraesCS7A01G443100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G443100 chr7A 100.000 3465 0 0 1 3465 637866397 637862933 0.000000e+00 6399.0
1 TraesCS7A01G443100 chr7A 96.066 305 11 1 351 654 89977843 89977539 2.400000e-136 496.0
2 TraesCS7A01G443100 chr7A 80.260 385 43 18 3025 3397 637833958 637833595 3.430000e-65 259.0
3 TraesCS7A01G443100 chr7A 94.059 101 5 1 3022 3122 637826044 637825945 5.990000e-33 152.0
4 TraesCS7A01G443100 chr7A 90.625 96 8 1 3055 3150 637681209 637681115 3.630000e-25 126.0
5 TraesCS7A01G443100 chr7B 89.476 1910 90 55 723 2567 597083317 597081454 0.000000e+00 2311.0
6 TraesCS7A01G443100 chr7B 88.589 333 13 3 2709 3016 597081252 597080920 7.020000e-102 381.0
7 TraesCS7A01G443100 chr7B 81.591 440 42 25 3024 3435 597080823 597080395 9.270000e-86 327.0
8 TraesCS7A01G443100 chr7D 89.212 1928 85 38 723 2567 552165738 552163851 0.000000e+00 2294.0
9 TraesCS7A01G443100 chr7D 85.995 407 33 10 2957 3346 552161692 552161293 6.920000e-112 414.0
10 TraesCS7A01G443100 chr7D 83.298 467 29 13 1669 2135 31127973 31127556 5.420000e-103 385.0
11 TraesCS7A01G443100 chr7D 88.013 317 12 7 2625 2915 552162013 552161697 5.500000e-93 351.0
12 TraesCS7A01G443100 chr7D 84.651 215 24 8 3023 3237 552141411 552141206 4.530000e-49 206.0
13 TraesCS7A01G443100 chr7D 84.651 215 24 8 3023 3237 552154401 552154196 4.530000e-49 206.0
14 TraesCS7A01G443100 chr7D 93.939 66 1 3 653 716 552166026 552165962 2.850000e-16 97.1
15 TraesCS7A01G443100 chr7D 79.851 134 17 6 9 133 552166806 552166674 4.760000e-14 89.8
16 TraesCS7A01G443100 chr3D 87.629 582 55 7 1685 2263 604874498 604875065 0.000000e+00 660.0
17 TraesCS7A01G443100 chr1A 86.218 595 60 10 1669 2263 8377703 8377131 2.940000e-175 625.0
18 TraesCS7A01G443100 chr1A 94.231 312 16 2 345 655 527245994 527245684 3.130000e-130 475.0
19 TraesCS7A01G443100 chr6D 87.527 465 50 8 1426 1884 86602256 86601794 6.580000e-147 531.0
20 TraesCS7A01G443100 chr6D 79.832 238 38 5 2003 2240 86601783 86601556 7.690000e-37 165.0
21 TraesCS7A01G443100 chr6A 87.500 464 52 6 1426 1884 104113771 104113309 6.580000e-147 531.0
22 TraesCS7A01G443100 chr6A 80.488 246 37 8 2000 2244 104113301 104113066 9.880000e-41 178.0
23 TraesCS7A01G443100 chr6B 87.419 461 51 7 1429 1884 164034740 164034282 1.100000e-144 523.0
24 TraesCS7A01G443100 chr6B 80.087 231 37 4 1999 2229 164034275 164034054 2.770000e-36 163.0
25 TraesCS7A01G443100 chrUn 94.904 314 15 1 343 655 56924344 56924657 1.120000e-134 490.0
26 TraesCS7A01G443100 chr2B 94.637 317 15 2 340 655 270186555 270186240 1.120000e-134 490.0
27 TraesCS7A01G443100 chr2A 95.146 309 13 2 351 658 777014720 777014413 1.450000e-133 486.0
28 TraesCS7A01G443100 chr2A 95.098 306 14 1 351 655 733160316 733160011 6.730000e-132 481.0
29 TraesCS7A01G443100 chr4A 95.082 305 14 1 351 654 617657432 617657128 2.420000e-131 479.0
30 TraesCS7A01G443100 chr4A 85.649 439 50 6 1825 2263 447541375 447540950 1.900000e-122 449.0
31 TraesCS7A01G443100 chr4A 76.074 326 31 24 2373 2673 374548909 374549212 3.630000e-25 126.0
32 TraesCS7A01G443100 chr4D 94.788 307 15 1 349 654 56741123 56741429 8.700000e-131 477.0
33 TraesCS7A01G443100 chr3B 94.481 308 16 1 349 655 235973316 235973623 1.130000e-129 473.0
34 TraesCS7A01G443100 chr5A 77.301 326 28 22 2373 2673 287632808 287632504 2.150000e-32 150.0
35 TraesCS7A01G443100 chr3A 76.524 328 30 24 2373 2675 196878507 196878202 6.030000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G443100 chr7A 637862933 637866397 3464 True 6399.000000 6399 100.0000 1 3465 1 chr7A.!!$R5 3464
1 TraesCS7A01G443100 chr7B 597080395 597083317 2922 True 1006.333333 2311 86.5520 723 3435 3 chr7B.!!$R1 2712
2 TraesCS7A01G443100 chr7D 552161293 552166806 5513 True 649.180000 2294 87.4020 9 3346 5 chr7D.!!$R4 3337
3 TraesCS7A01G443100 chr3D 604874498 604875065 567 False 660.000000 660 87.6290 1685 2263 1 chr3D.!!$F1 578
4 TraesCS7A01G443100 chr1A 8377131 8377703 572 True 625.000000 625 86.2180 1669 2263 1 chr1A.!!$R1 594
5 TraesCS7A01G443100 chr6D 86601556 86602256 700 True 348.000000 531 83.6795 1426 2240 2 chr6D.!!$R1 814
6 TraesCS7A01G443100 chr6A 104113066 104113771 705 True 354.500000 531 83.9940 1426 2244 2 chr6A.!!$R1 818
7 TraesCS7A01G443100 chr6B 164034054 164034740 686 True 343.000000 523 83.7530 1429 2229 2 chr6B.!!$R1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 158 0.036388 GCCGATGACTCTTCACCCAA 60.036 55.0 0.00 0.0 33.38 4.12 F
603 1053 0.250901 GTGCATGTCACTCCAACCCT 60.251 55.0 11.51 0.0 42.38 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2709 0.526524 CGACGAGATTCAGTCAGGGC 60.527 60.0 11.19 0.0 37.23 5.19 R
2578 5155 0.035820 GTGCCCTCCGGTGTTAATCA 60.036 55.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 79 8.691661 AGTATCTACAAAAATGACTTGGTGTT 57.308 30.769 0.00 0.00 0.00 3.32
113 122 3.069586 TGGATTAACATCGTCTAGCCCAG 59.930 47.826 0.00 0.00 0.00 4.45
115 124 0.750850 TAACATCGTCTAGCCCAGCC 59.249 55.000 0.00 0.00 0.00 4.85
116 125 2.028190 CATCGTCTAGCCCAGCCG 59.972 66.667 0.00 0.00 0.00 5.52
117 126 3.917760 ATCGTCTAGCCCAGCCGC 61.918 66.667 0.00 0.00 0.00 6.53
119 128 4.577246 CGTCTAGCCCAGCCGCTC 62.577 72.222 0.00 0.00 40.39 5.03
130 139 2.815647 GCCGCTCGGTTCTTCCTG 60.816 66.667 10.24 0.00 37.65 3.86
133 142 2.815647 GCTCGGTTCTTCCTGCCG 60.816 66.667 0.00 0.00 46.12 5.69
139 148 0.250513 GGTTCTTCCTGCCGATGACT 59.749 55.000 0.00 0.00 0.00 3.41
140 149 1.646189 GTTCTTCCTGCCGATGACTC 58.354 55.000 0.00 0.00 0.00 3.36
141 150 1.205893 GTTCTTCCTGCCGATGACTCT 59.794 52.381 0.00 0.00 0.00 3.24
142 151 1.561643 TCTTCCTGCCGATGACTCTT 58.438 50.000 0.00 0.00 0.00 2.85
144 153 1.205655 CTTCCTGCCGATGACTCTTCA 59.794 52.381 0.00 0.00 35.73 3.02
147 156 0.460987 CTGCCGATGACTCTTCACCC 60.461 60.000 0.00 0.00 33.38 4.61
148 157 1.191489 TGCCGATGACTCTTCACCCA 61.191 55.000 0.00 0.00 33.38 4.51
149 158 0.036388 GCCGATGACTCTTCACCCAA 60.036 55.000 0.00 0.00 33.38 4.12
151 160 1.001974 CCGATGACTCTTCACCCAACA 59.998 52.381 0.00 0.00 33.38 3.33
153 162 3.138304 CGATGACTCTTCACCCAACAAA 58.862 45.455 0.00 0.00 33.38 2.83
154 163 3.058914 CGATGACTCTTCACCCAACAAAC 60.059 47.826 0.00 0.00 33.38 2.93
155 164 3.358111 TGACTCTTCACCCAACAAACA 57.642 42.857 0.00 0.00 0.00 2.83
156 165 3.691575 TGACTCTTCACCCAACAAACAA 58.308 40.909 0.00 0.00 0.00 2.83
172 619 4.098807 ACAAACAACAACAACCACTATCCC 59.901 41.667 0.00 0.00 0.00 3.85
177 624 2.173782 ACAACAACCACTATCCCACACA 59.826 45.455 0.00 0.00 0.00 3.72
188 635 4.771577 ACTATCCCACACATGCAAAAATCA 59.228 37.500 0.00 0.00 0.00 2.57
190 637 4.620589 TCCCACACATGCAAAAATCAAT 57.379 36.364 0.00 0.00 0.00 2.57
191 638 5.735285 TCCCACACATGCAAAAATCAATA 57.265 34.783 0.00 0.00 0.00 1.90
197 644 7.231607 CACACATGCAAAAATCAATAAAGCTC 58.768 34.615 0.00 0.00 0.00 4.09
205 652 3.567478 ATCAATAAAGCTCGAAGGCCT 57.433 42.857 0.00 0.00 0.00 5.19
210 657 0.951040 AAAGCTCGAAGGCCTTGTCG 60.951 55.000 26.25 21.98 38.62 4.35
226 673 2.076100 TGTCGAATGCAAGGTGCTTAG 58.924 47.619 0.00 0.00 45.31 2.18
229 676 3.002791 TCGAATGCAAGGTGCTTAGAAG 58.997 45.455 0.00 0.00 45.31 2.85
230 677 3.002791 CGAATGCAAGGTGCTTAGAAGA 58.997 45.455 0.00 0.00 45.31 2.87
231 678 3.063180 CGAATGCAAGGTGCTTAGAAGAG 59.937 47.826 0.00 0.00 45.31 2.85
232 679 2.479566 TGCAAGGTGCTTAGAAGAGG 57.520 50.000 1.43 0.00 45.31 3.69
233 680 1.699634 TGCAAGGTGCTTAGAAGAGGT 59.300 47.619 1.43 0.00 45.31 3.85
234 681 2.079925 GCAAGGTGCTTAGAAGAGGTG 58.920 52.381 0.00 0.00 40.96 4.00
237 684 1.912043 AGGTGCTTAGAAGAGGTGCAT 59.088 47.619 0.00 0.00 36.04 3.96
238 685 3.107601 AGGTGCTTAGAAGAGGTGCATA 58.892 45.455 0.00 0.00 36.04 3.14
240 687 4.019321 AGGTGCTTAGAAGAGGTGCATAAA 60.019 41.667 0.00 0.00 36.04 1.40
241 688 4.700213 GGTGCTTAGAAGAGGTGCATAAAA 59.300 41.667 0.00 0.00 36.04 1.52
242 689 5.183140 GGTGCTTAGAAGAGGTGCATAAAAA 59.817 40.000 0.00 0.00 36.04 1.94
261 708 2.403252 AAATACTAGCGCTGGTGCTT 57.597 45.000 33.55 23.29 44.46 3.91
266 713 2.009774 ACTAGCGCTGGTGCTTATTTG 58.990 47.619 26.69 0.00 44.46 2.32
267 714 2.009774 CTAGCGCTGGTGCTTATTTGT 58.990 47.619 22.90 0.00 44.46 2.83
271 718 2.030946 GCGCTGGTGCTTATTTGTAGAG 59.969 50.000 0.00 0.00 36.97 2.43
272 719 2.609459 CGCTGGTGCTTATTTGTAGAGG 59.391 50.000 0.00 0.00 36.97 3.69
273 720 3.610911 GCTGGTGCTTATTTGTAGAGGT 58.389 45.455 0.00 0.00 36.03 3.85
274 721 4.679639 CGCTGGTGCTTATTTGTAGAGGTA 60.680 45.833 0.00 0.00 36.97 3.08
275 722 5.183228 GCTGGTGCTTATTTGTAGAGGTAA 58.817 41.667 0.00 0.00 36.03 2.85
278 725 6.535540 TGGTGCTTATTTGTAGAGGTAAACA 58.464 36.000 0.00 0.00 0.00 2.83
279 726 7.172342 TGGTGCTTATTTGTAGAGGTAAACAT 58.828 34.615 0.00 0.00 0.00 2.71
288 735 7.989416 TTGTAGAGGTAAACATTTACTTGGG 57.011 36.000 12.90 0.00 42.00 4.12
292 739 4.736473 AGGTAAACATTTACTTGGGCACT 58.264 39.130 12.90 0.00 42.00 4.40
293 740 5.144832 AGGTAAACATTTACTTGGGCACTT 58.855 37.500 12.90 0.00 42.00 3.16
296 743 5.869649 AAACATTTACTTGGGCACTTCTT 57.130 34.783 0.00 0.00 0.00 2.52
297 744 5.869649 AACATTTACTTGGGCACTTCTTT 57.130 34.783 0.00 0.00 0.00 2.52
304 751 8.561738 TTTACTTGGGCACTTCTTTTATAGAG 57.438 34.615 0.00 0.00 33.51 2.43
305 752 5.501156 ACTTGGGCACTTCTTTTATAGAGG 58.499 41.667 0.00 0.00 36.12 3.69
312 759 6.037281 GGCACTTCTTTTATAGAGGTAAGCAC 59.963 42.308 0.00 0.00 40.89 4.40
313 760 6.037281 GCACTTCTTTTATAGAGGTAAGCACC 59.963 42.308 0.00 0.00 40.89 5.01
362 812 3.100207 CCCATTTAAGGGCTCCTTTGA 57.900 47.619 11.15 2.66 41.69 2.69
363 813 3.646534 CCCATTTAAGGGCTCCTTTGAT 58.353 45.455 11.15 4.53 41.69 2.57
364 814 4.033009 CCCATTTAAGGGCTCCTTTGATT 58.967 43.478 11.15 0.00 41.69 2.57
365 815 4.100035 CCCATTTAAGGGCTCCTTTGATTC 59.900 45.833 11.15 0.00 41.69 2.52
366 816 4.711355 CCATTTAAGGGCTCCTTTGATTCA 59.289 41.667 11.15 0.00 41.69 2.57
367 817 5.187576 CCATTTAAGGGCTCCTTTGATTCAA 59.812 40.000 11.15 0.00 41.69 2.69
368 818 6.295802 CCATTTAAGGGCTCCTTTGATTCAAA 60.296 38.462 11.19 11.19 41.69 2.69
389 839 9.632638 TTCAAAGGAATTCTATAGGATTTCTGG 57.367 33.333 14.48 10.44 35.70 3.86
390 840 9.003145 TCAAAGGAATTCTATAGGATTTCTGGA 57.997 33.333 14.48 12.28 35.70 3.86
391 841 9.282569 CAAAGGAATTCTATAGGATTTCTGGAG 57.717 37.037 14.48 5.15 35.70 3.86
392 842 7.566658 AGGAATTCTATAGGATTTCTGGAGG 57.433 40.000 13.18 0.00 35.70 4.30
393 843 7.316841 AGGAATTCTATAGGATTTCTGGAGGA 58.683 38.462 13.18 0.00 35.70 3.71
394 844 7.966593 AGGAATTCTATAGGATTTCTGGAGGAT 59.033 37.037 13.18 0.00 35.70 3.24
395 845 8.610369 GGAATTCTATAGGATTTCTGGAGGATT 58.390 37.037 7.72 0.00 35.70 3.01
396 846 9.447157 GAATTCTATAGGATTTCTGGAGGATTG 57.553 37.037 7.72 0.00 33.80 2.67
397 847 8.748179 ATTCTATAGGATTTCTGGAGGATTGA 57.252 34.615 0.00 0.00 0.00 2.57
398 848 8.567198 TTCTATAGGATTTCTGGAGGATTGAA 57.433 34.615 0.00 0.00 0.00 2.69
399 849 8.567198 TCTATAGGATTTCTGGAGGATTGAAA 57.433 34.615 0.00 0.00 34.75 2.69
400 850 9.175577 TCTATAGGATTTCTGGAGGATTGAAAT 57.824 33.333 0.00 0.00 41.37 2.17
408 858 9.705103 ATTTCTGGAGGATTGAAATCATTAAGA 57.295 29.630 5.46 3.17 36.13 2.10
409 859 9.532494 TTTCTGGAGGATTGAAATCATTAAGAA 57.468 29.630 5.46 8.10 37.15 2.52
410 860 9.705103 TTCTGGAGGATTGAAATCATTAAGAAT 57.295 29.630 5.46 0.00 37.15 2.40
411 861 9.705103 TCTGGAGGATTGAAATCATTAAGAATT 57.295 29.630 5.46 0.00 37.15 2.17
427 877 9.586435 CATTAAGAATTTTTCCTATGTTGGTCC 57.414 33.333 0.00 0.00 0.00 4.46
428 878 8.950007 TTAAGAATTTTTCCTATGTTGGTCCT 57.050 30.769 0.00 0.00 0.00 3.85
429 879 7.855784 AAGAATTTTTCCTATGTTGGTCCTT 57.144 32.000 0.00 0.00 0.00 3.36
430 880 7.855784 AGAATTTTTCCTATGTTGGTCCTTT 57.144 32.000 0.00 0.00 0.00 3.11
431 881 7.670364 AGAATTTTTCCTATGTTGGTCCTTTG 58.330 34.615 0.00 0.00 0.00 2.77
432 882 7.508977 AGAATTTTTCCTATGTTGGTCCTTTGA 59.491 33.333 0.00 0.00 0.00 2.69
433 883 7.797121 ATTTTTCCTATGTTGGTCCTTTGAT 57.203 32.000 0.00 0.00 0.00 2.57
434 884 7.610580 TTTTTCCTATGTTGGTCCTTTGATT 57.389 32.000 0.00 0.00 0.00 2.57
435 885 7.610580 TTTTCCTATGTTGGTCCTTTGATTT 57.389 32.000 0.00 0.00 0.00 2.17
436 886 8.713708 TTTTCCTATGTTGGTCCTTTGATTTA 57.286 30.769 0.00 0.00 0.00 1.40
437 887 8.893563 TTTCCTATGTTGGTCCTTTGATTTAT 57.106 30.769 0.00 0.00 0.00 1.40
438 888 9.983024 TTTCCTATGTTGGTCCTTTGATTTATA 57.017 29.630 0.00 0.00 0.00 0.98
439 889 9.627123 TTCCTATGTTGGTCCTTTGATTTATAG 57.373 33.333 0.00 0.00 0.00 1.31
440 890 8.217799 TCCTATGTTGGTCCTTTGATTTATAGG 58.782 37.037 0.00 0.00 36.41 2.57
441 891 8.217799 CCTATGTTGGTCCTTTGATTTATAGGA 58.782 37.037 0.00 0.00 36.93 2.94
442 892 9.799106 CTATGTTGGTCCTTTGATTTATAGGAT 57.201 33.333 0.00 0.00 40.05 3.24
444 894 8.292444 TGTTGGTCCTTTGATTTATAGGATTG 57.708 34.615 0.00 0.00 40.05 2.67
445 895 7.341769 TGTTGGTCCTTTGATTTATAGGATTGG 59.658 37.037 0.00 0.00 40.05 3.16
446 896 7.219601 TGGTCCTTTGATTTATAGGATTGGA 57.780 36.000 0.00 0.00 40.05 3.53
447 897 7.825709 TGGTCCTTTGATTTATAGGATTGGAT 58.174 34.615 0.00 0.00 40.05 3.41
448 898 7.944554 TGGTCCTTTGATTTATAGGATTGGATC 59.055 37.037 0.00 0.00 40.05 3.36
449 899 8.166726 GGTCCTTTGATTTATAGGATTGGATCT 58.833 37.037 0.00 0.00 40.05 2.75
450 900 9.225436 GTCCTTTGATTTATAGGATTGGATCTC 57.775 37.037 0.00 0.00 40.05 2.75
451 901 8.948362 TCCTTTGATTTATAGGATTGGATCTCA 58.052 33.333 0.00 0.00 33.23 3.27
452 902 9.750783 CCTTTGATTTATAGGATTGGATCTCAT 57.249 33.333 0.00 0.00 0.00 2.90
456 906 9.788815 TGATTTATAGGATTGGATCTCATAGGA 57.211 33.333 0.00 0.00 0.00 2.94
512 962 9.847224 TTTTATAGGAAATCTAACATCCACTCC 57.153 33.333 0.00 0.00 35.62 3.85
513 963 8.561536 TTATAGGAAATCTAACATCCACTCCA 57.438 34.615 0.00 0.00 35.62 3.86
514 964 5.779241 AGGAAATCTAACATCCACTCCAA 57.221 39.130 0.00 0.00 35.62 3.53
515 965 5.501156 AGGAAATCTAACATCCACTCCAAC 58.499 41.667 0.00 0.00 35.62 3.77
516 966 4.640647 GGAAATCTAACATCCACTCCAACC 59.359 45.833 0.00 0.00 33.30 3.77
517 967 5.501156 GAAATCTAACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
518 968 4.762289 ATCTAACATCCACTCCAACCTC 57.238 45.455 0.00 0.00 0.00 3.85
519 969 3.791320 TCTAACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
520 970 4.168101 TCTAACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
521 971 3.884037 AACATCCACTCCAACCTCTTT 57.116 42.857 0.00 0.00 0.00 2.52
522 972 3.884037 ACATCCACTCCAACCTCTTTT 57.116 42.857 0.00 0.00 0.00 2.27
523 973 4.184649 ACATCCACTCCAACCTCTTTTT 57.815 40.909 0.00 0.00 0.00 1.94
524 974 5.319043 ACATCCACTCCAACCTCTTTTTA 57.681 39.130 0.00 0.00 0.00 1.52
525 975 5.070685 ACATCCACTCCAACCTCTTTTTAC 58.929 41.667 0.00 0.00 0.00 2.01
526 976 4.781775 TCCACTCCAACCTCTTTTTACA 57.218 40.909 0.00 0.00 0.00 2.41
527 977 5.118729 TCCACTCCAACCTCTTTTTACAA 57.881 39.130 0.00 0.00 0.00 2.41
528 978 5.701224 TCCACTCCAACCTCTTTTTACAAT 58.299 37.500 0.00 0.00 0.00 2.71
529 979 6.133356 TCCACTCCAACCTCTTTTTACAATT 58.867 36.000 0.00 0.00 0.00 2.32
530 980 6.264518 TCCACTCCAACCTCTTTTTACAATTC 59.735 38.462 0.00 0.00 0.00 2.17
531 981 6.447162 CACTCCAACCTCTTTTTACAATTCC 58.553 40.000 0.00 0.00 0.00 3.01
532 982 6.265422 CACTCCAACCTCTTTTTACAATTCCT 59.735 38.462 0.00 0.00 0.00 3.36
533 983 6.839134 ACTCCAACCTCTTTTTACAATTCCTT 59.161 34.615 0.00 0.00 0.00 3.36
534 984 7.344612 ACTCCAACCTCTTTTTACAATTCCTTT 59.655 33.333 0.00 0.00 0.00 3.11
535 985 7.496747 TCCAACCTCTTTTTACAATTCCTTTG 58.503 34.615 0.00 0.00 41.36 2.77
536 986 6.202762 CCAACCTCTTTTTACAATTCCTTTGC 59.797 38.462 0.00 0.00 39.03 3.68
537 987 6.731292 ACCTCTTTTTACAATTCCTTTGCT 57.269 33.333 0.00 0.00 39.03 3.91
538 988 7.124573 ACCTCTTTTTACAATTCCTTTGCTT 57.875 32.000 0.00 0.00 39.03 3.91
539 989 7.564793 ACCTCTTTTTACAATTCCTTTGCTTT 58.435 30.769 0.00 0.00 39.03 3.51
540 990 8.046708 ACCTCTTTTTACAATTCCTTTGCTTTT 58.953 29.630 0.00 0.00 39.03 2.27
541 991 8.892723 CCTCTTTTTACAATTCCTTTGCTTTTT 58.107 29.630 0.00 0.00 39.03 1.94
564 1014 4.494350 GTGTCATCAAACACTTCATGCT 57.506 40.909 0.09 0.00 44.90 3.79
565 1015 5.611796 GTGTCATCAAACACTTCATGCTA 57.388 39.130 0.09 0.00 44.90 3.49
566 1016 6.000891 GTGTCATCAAACACTTCATGCTAA 57.999 37.500 0.09 0.00 44.90 3.09
567 1017 6.615088 GTGTCATCAAACACTTCATGCTAAT 58.385 36.000 0.09 0.00 44.90 1.73
568 1018 7.086376 GTGTCATCAAACACTTCATGCTAATT 58.914 34.615 0.09 0.00 44.90 1.40
569 1019 7.272084 GTGTCATCAAACACTTCATGCTAATTC 59.728 37.037 0.09 0.00 44.90 2.17
570 1020 7.175467 TGTCATCAAACACTTCATGCTAATTCT 59.825 33.333 0.00 0.00 0.00 2.40
571 1021 7.484007 GTCATCAAACACTTCATGCTAATTCTG 59.516 37.037 0.00 0.00 0.00 3.02
572 1022 6.882610 TCAAACACTTCATGCTAATTCTGT 57.117 33.333 0.00 0.00 0.00 3.41
573 1023 7.977789 TCAAACACTTCATGCTAATTCTGTA 57.022 32.000 0.00 0.00 0.00 2.74
574 1024 8.032952 TCAAACACTTCATGCTAATTCTGTAG 57.967 34.615 0.00 0.00 0.00 2.74
575 1025 6.992063 AACACTTCATGCTAATTCTGTAGG 57.008 37.500 0.00 0.00 0.00 3.18
576 1026 6.299805 ACACTTCATGCTAATTCTGTAGGA 57.700 37.500 0.00 0.00 0.00 2.94
577 1027 6.893583 ACACTTCATGCTAATTCTGTAGGAT 58.106 36.000 0.00 0.00 32.85 3.24
578 1028 7.341805 ACACTTCATGCTAATTCTGTAGGATT 58.658 34.615 0.00 0.00 30.44 3.01
579 1029 7.497249 ACACTTCATGCTAATTCTGTAGGATTC 59.503 37.037 0.00 0.00 30.44 2.52
580 1030 7.496920 CACTTCATGCTAATTCTGTAGGATTCA 59.503 37.037 0.00 0.00 30.44 2.57
581 1031 8.216423 ACTTCATGCTAATTCTGTAGGATTCAT 58.784 33.333 0.00 0.00 30.44 2.57
582 1032 7.974482 TCATGCTAATTCTGTAGGATTCATG 57.026 36.000 7.68 7.68 30.44 3.07
583 1033 7.512130 TCATGCTAATTCTGTAGGATTCATGT 58.488 34.615 11.40 0.00 30.44 3.21
584 1034 7.443272 TCATGCTAATTCTGTAGGATTCATGTG 59.557 37.037 11.40 1.07 30.44 3.21
585 1035 6.653020 TGCTAATTCTGTAGGATTCATGTGT 58.347 36.000 0.00 0.00 0.00 3.72
586 1036 6.539826 TGCTAATTCTGTAGGATTCATGTGTG 59.460 38.462 0.00 0.00 0.00 3.82
587 1037 5.824904 AATTCTGTAGGATTCATGTGTGC 57.175 39.130 0.00 0.00 0.00 4.57
588 1038 3.979101 TCTGTAGGATTCATGTGTGCA 57.021 42.857 0.00 0.00 0.00 4.57
589 1039 4.492494 TCTGTAGGATTCATGTGTGCAT 57.508 40.909 0.00 0.00 35.32 3.96
598 1048 1.525941 CATGTGTGCATGTCACTCCA 58.474 50.000 17.30 14.40 45.48 3.86
599 1049 1.881324 CATGTGTGCATGTCACTCCAA 59.119 47.619 17.30 3.69 45.48 3.53
600 1050 1.308047 TGTGTGCATGTCACTCCAAC 58.692 50.000 17.30 10.04 45.81 3.77
601 1051 0.593128 GTGTGCATGTCACTCCAACC 59.407 55.000 17.30 0.00 45.81 3.77
602 1052 0.537143 TGTGCATGTCACTCCAACCC 60.537 55.000 17.30 0.00 45.81 4.11
603 1053 0.250901 GTGCATGTCACTCCAACCCT 60.251 55.000 11.51 0.00 42.38 4.34
604 1054 1.003118 GTGCATGTCACTCCAACCCTA 59.997 52.381 11.51 0.00 42.38 3.53
605 1055 1.915489 TGCATGTCACTCCAACCCTAT 59.085 47.619 0.00 0.00 0.00 2.57
606 1056 3.111484 TGCATGTCACTCCAACCCTATA 58.889 45.455 0.00 0.00 0.00 1.31
607 1057 3.118408 TGCATGTCACTCCAACCCTATAC 60.118 47.826 0.00 0.00 0.00 1.47
608 1058 3.134804 GCATGTCACTCCAACCCTATACT 59.865 47.826 0.00 0.00 0.00 2.12
609 1059 4.384208 GCATGTCACTCCAACCCTATACTT 60.384 45.833 0.00 0.00 0.00 2.24
610 1060 5.745227 CATGTCACTCCAACCCTATACTTT 58.255 41.667 0.00 0.00 0.00 2.66
611 1061 5.836024 TGTCACTCCAACCCTATACTTTT 57.164 39.130 0.00 0.00 0.00 2.27
612 1062 5.801380 TGTCACTCCAACCCTATACTTTTC 58.199 41.667 0.00 0.00 0.00 2.29
613 1063 5.183969 GTCACTCCAACCCTATACTTTTCC 58.816 45.833 0.00 0.00 0.00 3.13
614 1064 5.045797 GTCACTCCAACCCTATACTTTTCCT 60.046 44.000 0.00 0.00 0.00 3.36
615 1065 6.155737 GTCACTCCAACCCTATACTTTTCCTA 59.844 42.308 0.00 0.00 0.00 2.94
616 1066 6.906901 TCACTCCAACCCTATACTTTTCCTAT 59.093 38.462 0.00 0.00 0.00 2.57
617 1067 7.404980 TCACTCCAACCCTATACTTTTCCTATT 59.595 37.037 0.00 0.00 0.00 1.73
618 1068 7.715686 CACTCCAACCCTATACTTTTCCTATTC 59.284 40.741 0.00 0.00 0.00 1.75
619 1069 7.145474 TCCAACCCTATACTTTTCCTATTCC 57.855 40.000 0.00 0.00 0.00 3.01
620 1070 6.912561 TCCAACCCTATACTTTTCCTATTCCT 59.087 38.462 0.00 0.00 0.00 3.36
621 1071 8.075621 TCCAACCCTATACTTTTCCTATTCCTA 58.924 37.037 0.00 0.00 0.00 2.94
622 1072 8.155510 CCAACCCTATACTTTTCCTATTCCTAC 58.844 40.741 0.00 0.00 0.00 3.18
623 1073 7.536159 ACCCTATACTTTTCCTATTCCTACG 57.464 40.000 0.00 0.00 0.00 3.51
624 1074 7.300658 ACCCTATACTTTTCCTATTCCTACGA 58.699 38.462 0.00 0.00 0.00 3.43
625 1075 7.954620 ACCCTATACTTTTCCTATTCCTACGAT 59.045 37.037 0.00 0.00 0.00 3.73
626 1076 8.813951 CCCTATACTTTTCCTATTCCTACGATT 58.186 37.037 0.00 0.00 0.00 3.34
631 1081 8.857694 ACTTTTCCTATTCCTACGATTTGAAA 57.142 30.769 0.00 0.00 0.00 2.69
632 1082 9.292195 ACTTTTCCTATTCCTACGATTTGAAAA 57.708 29.630 0.00 0.00 0.00 2.29
635 1085 8.446599 TTCCTATTCCTACGATTTGAAAATCC 57.553 34.615 9.59 0.00 41.30 3.01
636 1086 7.802117 TCCTATTCCTACGATTTGAAAATCCT 58.198 34.615 9.59 2.32 41.30 3.24
637 1087 7.715249 TCCTATTCCTACGATTTGAAAATCCTG 59.285 37.037 9.59 0.98 41.30 3.86
638 1088 7.715249 CCTATTCCTACGATTTGAAAATCCTGA 59.285 37.037 9.59 0.55 41.30 3.86
639 1089 6.985188 TTCCTACGATTTGAAAATCCTGAG 57.015 37.500 9.59 5.23 41.30 3.35
640 1090 6.294361 TCCTACGATTTGAAAATCCTGAGA 57.706 37.500 9.59 1.27 41.30 3.27
641 1091 6.707290 TCCTACGATTTGAAAATCCTGAGAA 58.293 36.000 9.59 0.00 41.30 2.87
642 1092 7.338710 TCCTACGATTTGAAAATCCTGAGAAT 58.661 34.615 9.59 0.00 41.30 2.40
643 1093 7.495934 TCCTACGATTTGAAAATCCTGAGAATC 59.504 37.037 9.59 0.00 41.30 2.52
644 1094 7.280876 CCTACGATTTGAAAATCCTGAGAATCA 59.719 37.037 9.59 0.00 41.69 2.57
645 1095 7.452880 ACGATTTGAAAATCCTGAGAATCAA 57.547 32.000 9.59 0.00 41.30 2.57
646 1096 7.885297 ACGATTTGAAAATCCTGAGAATCAAA 58.115 30.769 9.59 0.00 41.30 2.69
647 1097 8.025445 ACGATTTGAAAATCCTGAGAATCAAAG 58.975 33.333 9.59 0.00 41.30 2.77
648 1098 8.239314 CGATTTGAAAATCCTGAGAATCAAAGA 58.761 33.333 9.59 0.00 41.30 2.52
649 1099 9.570488 GATTTGAAAATCCTGAGAATCAAAGAG 57.430 33.333 4.70 0.00 39.75 2.85
656 1106 2.269023 TGAGAATCAAAGAGGGCCTCA 58.731 47.619 33.86 15.05 45.97 3.86
657 1107 2.644299 TGAGAATCAAAGAGGGCCTCAA 59.356 45.455 33.86 17.05 45.97 3.02
697 1147 2.524306 CCCAGGTCAACTTATGCCAAA 58.476 47.619 0.00 0.00 0.00 3.28
707 1157 4.712122 ACTTATGCCAAATTGTTACCCG 57.288 40.909 0.00 0.00 0.00 5.28
716 1166 5.618418 GCCAAATTGTTACCCGAAAGACTAC 60.618 44.000 0.00 0.00 0.00 2.73
717 1167 5.704053 CCAAATTGTTACCCGAAAGACTACT 59.296 40.000 0.00 0.00 0.00 2.57
718 1168 6.128363 CCAAATTGTTACCCGAAAGACTACTC 60.128 42.308 0.00 0.00 0.00 2.59
721 1388 5.733620 TGTTACCCGAAAGACTACTCATT 57.266 39.130 0.00 0.00 0.00 2.57
754 1421 2.494870 CCGCTACAGTACTTGGGTTACT 59.505 50.000 0.00 0.00 0.00 2.24
758 1425 5.335897 CGCTACAGTACTTGGGTTACTACAA 60.336 44.000 0.00 0.00 0.00 2.41
760 1427 7.101700 GCTACAGTACTTGGGTTACTACAAAT 58.898 38.462 0.00 0.00 0.00 2.32
878 1557 1.486145 AACCTACCAACCCGACCCAG 61.486 60.000 0.00 0.00 0.00 4.45
1017 1710 4.008933 AGCCCACTCGCTGTCACC 62.009 66.667 0.00 0.00 37.82 4.02
1037 1730 2.048690 GAGCAGATCGATCCGGGC 60.049 66.667 21.66 20.98 0.00 6.13
1063 1756 2.005451 CCTCAGATTGCCGTTCTTCAG 58.995 52.381 0.00 0.00 0.00 3.02
1074 1794 2.094390 CCGTTCTTCAGTCCAATCCGTA 60.094 50.000 0.00 0.00 0.00 4.02
1075 1795 3.430374 CCGTTCTTCAGTCCAATCCGTAT 60.430 47.826 0.00 0.00 0.00 3.06
1096 1816 4.424430 CGCCGCGTTTCTTGGTCG 62.424 66.667 4.92 0.00 0.00 4.79
1146 1866 3.825623 GGGATGAAGGGGCTGGGG 61.826 72.222 0.00 0.00 0.00 4.96
1907 2670 6.147656 GCATCCAAGATCCAATTTTCGTTTTT 59.852 34.615 0.00 0.00 0.00 1.94
1945 2709 4.521062 CGAGCGGAGGAAGCAGGG 62.521 72.222 0.00 0.00 37.01 4.45
1950 2714 4.120755 GGAGGAAGCAGGGCCCTG 62.121 72.222 42.66 42.66 46.15 4.45
1964 2728 0.526524 GCCCTGACTGAATCTCGTCG 60.527 60.000 0.00 0.00 32.93 5.12
1977 2741 3.328382 TCTCGTCGGGTTTTGAATGAT 57.672 42.857 0.00 0.00 0.00 2.45
1979 2743 2.080693 TCGTCGGGTTTTGAATGATGG 58.919 47.619 0.00 0.00 0.00 3.51
2274 3051 1.664588 GCCGCGCAGTAGATTAGAGAG 60.665 57.143 8.75 0.00 0.00 3.20
2276 3053 2.095969 CCGCGCAGTAGATTAGAGAGAG 60.096 54.545 8.75 0.00 0.00 3.20
2277 3054 2.803386 CGCGCAGTAGATTAGAGAGAGA 59.197 50.000 8.75 0.00 0.00 3.10
2278 3055 3.435327 CGCGCAGTAGATTAGAGAGAGAT 59.565 47.826 8.75 0.00 0.00 2.75
2279 3056 4.083537 CGCGCAGTAGATTAGAGAGAGATT 60.084 45.833 8.75 0.00 0.00 2.40
2280 3057 5.561919 CGCGCAGTAGATTAGAGAGAGATTT 60.562 44.000 8.75 0.00 0.00 2.17
2281 3058 5.629020 GCGCAGTAGATTAGAGAGAGATTTG 59.371 44.000 0.30 0.00 0.00 2.32
2282 3059 6.734137 CGCAGTAGATTAGAGAGAGATTTGT 58.266 40.000 0.00 0.00 0.00 2.83
2283 3060 7.199766 CGCAGTAGATTAGAGAGAGATTTGTT 58.800 38.462 0.00 0.00 0.00 2.83
2284 3061 7.704472 CGCAGTAGATTAGAGAGAGATTTGTTT 59.296 37.037 0.00 0.00 0.00 2.83
2285 3062 9.377312 GCAGTAGATTAGAGAGAGATTTGTTTT 57.623 33.333 0.00 0.00 0.00 2.43
2294 3071 8.389779 AGAGAGAGATTTGTTTTCCTTTTCTC 57.610 34.615 0.00 0.00 0.00 2.87
2298 3075 9.809096 GAGAGATTTGTTTTCCTTTTCTCTTTT 57.191 29.630 0.00 0.00 38.76 2.27
2339 3116 3.943671 TCCCTTCTCTCTCTCCTAGTG 57.056 52.381 0.00 0.00 0.00 2.74
2342 3119 3.287222 CCTTCTCTCTCTCCTAGTGGTG 58.713 54.545 0.00 0.00 34.23 4.17
2369 3146 1.306148 TACCGTCGTCTGATAGCCAG 58.694 55.000 0.00 0.00 44.27 4.85
2433 3212 3.725010 GCTCGACCAAGCTGTAAAAATCG 60.725 47.826 0.00 0.00 39.27 3.34
2435 3214 2.482721 CGACCAAGCTGTAAAAATCGGT 59.517 45.455 0.00 0.00 0.00 4.69
2436 3215 3.666902 CGACCAAGCTGTAAAAATCGGTG 60.667 47.826 0.00 0.00 0.00 4.94
2437 3216 3.482436 ACCAAGCTGTAAAAATCGGTGA 58.518 40.909 0.00 0.00 0.00 4.02
2454 3233 3.003068 CGGTGATGAGAGGAATGAATTGC 59.997 47.826 0.00 0.00 0.00 3.56
2459 3238 3.349927 TGAGAGGAATGAATTGCTGTGG 58.650 45.455 1.42 0.00 38.63 4.17
2497 3276 1.443802 CCTCCGTTGCTCCTTTTCTC 58.556 55.000 0.00 0.00 0.00 2.87
2499 3278 2.072298 CTCCGTTGCTCCTTTTCTCAG 58.928 52.381 0.00 0.00 0.00 3.35
2505 3284 5.642063 CCGTTGCTCCTTTTCTCAGTTTATA 59.358 40.000 0.00 0.00 0.00 0.98
2508 3287 7.905493 CGTTGCTCCTTTTCTCAGTTTATATTC 59.095 37.037 0.00 0.00 0.00 1.75
2558 3337 3.268603 CACGTCGCCTGTGCACAA 61.269 61.111 21.98 2.34 37.32 3.33
2567 3346 1.002033 GCCTGTGCACAAGACAAGAAG 60.002 52.381 21.98 5.46 37.47 2.85
2568 3347 2.292267 CCTGTGCACAAGACAAGAAGT 58.708 47.619 21.98 0.00 0.00 3.01
2569 3348 2.032550 CCTGTGCACAAGACAAGAAGTG 59.967 50.000 21.98 4.14 35.19 3.16
2570 3349 2.938451 CTGTGCACAAGACAAGAAGTGA 59.062 45.455 21.98 0.00 33.99 3.41
2572 3351 3.126858 TGTGCACAAGACAAGAAGTGAAC 59.873 43.478 19.28 0.00 40.24 3.18
2578 5155 3.771577 AGACAAGAAGTGAACCGGAAT 57.228 42.857 9.46 0.00 0.00 3.01
2582 5159 4.398319 ACAAGAAGTGAACCGGAATGATT 58.602 39.130 9.46 0.00 0.00 2.57
2612 5189 5.236478 CGGAGGGCACTACTGTATATTTTTG 59.764 44.000 0.00 0.00 0.00 2.44
2613 5190 5.008712 GGAGGGCACTACTGTATATTTTTGC 59.991 44.000 0.00 0.00 0.00 3.68
2617 5194 4.037565 GCACTACTGTATATTTTTGCCCCC 59.962 45.833 0.00 0.00 0.00 5.40
2619 5196 5.654650 CACTACTGTATATTTTTGCCCCCAA 59.345 40.000 0.00 0.00 0.00 4.12
2620 5197 6.153680 CACTACTGTATATTTTTGCCCCCAAA 59.846 38.462 0.00 0.00 39.08 3.28
2623 5200 6.413892 ACTGTATATTTTTGCCCCCAAAATG 58.586 36.000 2.85 0.00 46.84 2.32
2640 5217 0.322816 ATGTGATGGGCAGTGGTGTC 60.323 55.000 0.00 0.00 0.00 3.67
2668 5245 1.136690 CATTGCATTGATCGCATGGC 58.863 50.000 2.33 0.00 39.58 4.40
2696 5273 1.729470 CTAGTCGGCAGCACGGAGAT 61.729 60.000 0.00 0.00 0.00 2.75
2795 5432 2.661537 CAACTGCTGACGCGGACA 60.662 61.111 12.47 9.70 45.62 4.02
2917 5564 2.123428 GTATTGGCTGGCTGGCTGG 61.123 63.158 18.27 0.85 42.34 4.85
2936 5583 0.671251 GCACCACGGATAGAGAGAGG 59.329 60.000 0.00 0.00 0.00 3.69
2937 5584 1.323412 CACCACGGATAGAGAGAGGG 58.677 60.000 0.00 0.00 0.00 4.30
2940 5587 2.224917 ACCACGGATAGAGAGAGGGATC 60.225 54.545 0.00 0.00 0.00 3.36
3016 5666 0.744414 ATGGACGGAGATGCCAAACG 60.744 55.000 0.00 0.00 34.95 3.60
3129 5876 2.358737 CCAGTTCACAGCCCGGTC 60.359 66.667 0.00 0.00 0.00 4.79
3133 5880 1.448013 GTTCACAGCCCGGTCTAGC 60.448 63.158 0.00 0.00 0.00 3.42
3159 5914 9.678941 CTTAACCATTGTTTCTCTTTAAGGTTC 57.321 33.333 0.00 0.00 37.87 3.62
3161 5916 5.240844 ACCATTGTTTCTCTTTAAGGTTCCG 59.759 40.000 0.00 0.00 0.00 4.30
3181 5936 3.369385 CGATTGGAAATCTGCAGCATTC 58.631 45.455 9.47 14.93 0.00 2.67
3193 5948 6.840780 TCTGCAGCATTCTAGCTATGTATA 57.159 37.500 9.47 0.00 44.54 1.47
3210 5971 7.096189 GCTATGTATATTGTGTCTACGTGTTGG 60.096 40.741 0.00 0.00 0.00 3.77
3218 5979 2.353269 TGTCTACGTGTTGGTTGCTTTG 59.647 45.455 0.00 0.00 0.00 2.77
3242 6003 2.223340 CCTGAAACATATGTGCGCCTTC 60.223 50.000 9.63 9.47 0.00 3.46
3244 6005 2.677836 TGAAACATATGTGCGCCTTCTC 59.322 45.455 9.63 0.00 0.00 2.87
3277 6040 3.338249 ACACACAAGTATGCATCACCTC 58.662 45.455 0.19 0.00 0.00 3.85
3284 6047 2.233676 AGTATGCATCACCTCAACACGA 59.766 45.455 0.19 0.00 0.00 4.35
3291 6054 4.851558 GCATCACCTCAACACGATAAAAAC 59.148 41.667 0.00 0.00 0.00 2.43
3315 6078 3.056891 TGGCCGCCAGAAAATAAAAAGAG 60.057 43.478 8.43 0.00 0.00 2.85
3347 6110 0.034767 TTGCCCATTCAGGAGAGCAG 60.035 55.000 0.00 0.00 41.22 4.24
3351 6114 1.595466 CCATTCAGGAGAGCAGATGC 58.405 55.000 0.00 0.00 41.22 3.91
3366 6136 0.591488 GATGCGCGATGTCACGTCTA 60.591 55.000 12.10 0.00 35.59 2.59
3368 6138 1.939785 GCGCGATGTCACGTCTAGG 60.940 63.158 12.10 0.00 35.59 3.02
3384 6154 5.227238 GTCTAGGACGAGTTACGAAATGA 57.773 43.478 0.00 0.00 45.77 2.57
3385 6155 5.634896 GTCTAGGACGAGTTACGAAATGAA 58.365 41.667 0.00 0.00 45.77 2.57
3386 6156 5.738225 GTCTAGGACGAGTTACGAAATGAAG 59.262 44.000 0.00 0.00 45.77 3.02
3387 6157 3.251571 AGGACGAGTTACGAAATGAAGC 58.748 45.455 0.00 0.00 45.77 3.86
3397 6167 4.147219 ACGAAATGAAGCGAAGAAAAGG 57.853 40.909 0.00 0.00 0.00 3.11
3400 6170 4.152402 CGAAATGAAGCGAAGAAAAGGAGA 59.848 41.667 0.00 0.00 0.00 3.71
3401 6171 5.334105 CGAAATGAAGCGAAGAAAAGGAGAA 60.334 40.000 0.00 0.00 0.00 2.87
3404 6174 3.809832 TGAAGCGAAGAAAAGGAGAACAG 59.190 43.478 0.00 0.00 0.00 3.16
3421 6191 3.053896 GGTTCCCGCCAAACCGAG 61.054 66.667 0.00 0.00 37.06 4.63
3422 6192 3.733960 GTTCCCGCCAAACCGAGC 61.734 66.667 0.00 0.00 0.00 5.03
3449 6219 1.141019 GGCTTCCGAGTGCGATGTA 59.859 57.895 0.00 0.00 40.82 2.29
3453 6223 1.333931 CTTCCGAGTGCGATGTAGCTA 59.666 52.381 0.00 0.00 40.82 3.32
3454 6224 1.385528 TCCGAGTGCGATGTAGCTAA 58.614 50.000 0.00 0.00 40.82 3.09
3455 6225 1.065102 TCCGAGTGCGATGTAGCTAAC 59.935 52.381 0.00 0.00 40.82 2.34
3456 6226 1.478137 CGAGTGCGATGTAGCTAACC 58.522 55.000 0.00 0.00 40.82 2.85
3457 6227 1.202256 CGAGTGCGATGTAGCTAACCA 60.202 52.381 0.00 0.00 40.82 3.67
3458 6228 2.194271 GAGTGCGATGTAGCTAACCAC 58.806 52.381 0.00 0.00 38.13 4.16
3459 6229 1.825474 AGTGCGATGTAGCTAACCACT 59.175 47.619 0.00 1.33 38.13 4.00
3460 6230 1.927174 GTGCGATGTAGCTAACCACTG 59.073 52.381 0.00 0.00 38.13 3.66
3461 6231 1.548719 TGCGATGTAGCTAACCACTGT 59.451 47.619 0.00 0.00 38.13 3.55
3462 6232 2.194271 GCGATGTAGCTAACCACTGTC 58.806 52.381 0.00 0.00 0.00 3.51
3463 6233 2.810650 CGATGTAGCTAACCACTGTCC 58.189 52.381 0.00 0.00 0.00 4.02
3464 6234 2.427453 CGATGTAGCTAACCACTGTCCT 59.573 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.041030 TGCTCAAAGTTTTGATATCACCGTTTA 60.041 33.333 4.48 0.00 45.26 2.01
2 3 6.149633 GCTCAAAGTTTTGATATCACCGTTT 58.850 36.000 4.48 0.71 45.26 3.60
3 4 5.240623 TGCTCAAAGTTTTGATATCACCGTT 59.759 36.000 4.48 0.00 45.26 4.44
4 5 4.759693 TGCTCAAAGTTTTGATATCACCGT 59.240 37.500 4.48 0.00 45.26 4.83
6 7 9.455847 GATTATGCTCAAAGTTTTGATATCACC 57.544 33.333 4.48 0.00 45.26 4.02
7 8 9.162793 CGATTATGCTCAAAGTTTTGATATCAC 57.837 33.333 4.48 0.00 45.26 3.06
14 15 7.481798 GGTCTTACGATTATGCTCAAAGTTTTG 59.518 37.037 0.00 0.00 39.48 2.44
19 20 6.703607 AGATGGTCTTACGATTATGCTCAAAG 59.296 38.462 0.00 0.00 0.00 2.77
48 49 7.309194 GGCTAACACCAAGTCATTTTTGTAGAT 60.309 37.037 0.00 0.00 0.00 1.98
49 50 6.016610 GGCTAACACCAAGTCATTTTTGTAGA 60.017 38.462 0.00 0.00 0.00 2.59
50 51 6.149633 GGCTAACACCAAGTCATTTTTGTAG 58.850 40.000 0.00 0.00 0.00 2.74
51 52 5.278071 CGGCTAACACCAAGTCATTTTTGTA 60.278 40.000 0.00 0.00 0.00 2.41
60 69 3.071479 TCAAATCGGCTAACACCAAGTC 58.929 45.455 0.00 0.00 0.00 3.01
64 73 1.816074 GGTCAAATCGGCTAACACCA 58.184 50.000 0.00 0.00 0.00 4.17
65 74 0.725117 CGGTCAAATCGGCTAACACC 59.275 55.000 0.00 0.00 0.00 4.16
70 79 2.980568 ACAATTCGGTCAAATCGGCTA 58.019 42.857 0.00 0.00 0.00 3.93
103 112 4.577246 CGAGCGGCTGGGCTAGAC 62.577 72.222 7.50 0.00 44.93 2.59
113 122 2.815647 CAGGAAGAACCGAGCGGC 60.816 66.667 9.14 0.00 44.74 6.53
115 124 2.815647 GGCAGGAAGAACCGAGCG 60.816 66.667 0.00 0.00 44.74 5.03
130 139 0.036388 TTGGGTGAAGAGTCATCGGC 60.036 55.000 0.00 0.00 35.52 5.54
133 142 3.882888 TGTTTGTTGGGTGAAGAGTCATC 59.117 43.478 0.00 0.00 35.80 2.92
135 144 3.358111 TGTTTGTTGGGTGAAGAGTCA 57.642 42.857 0.00 0.00 0.00 3.41
137 146 3.426615 TGTTGTTTGTTGGGTGAAGAGT 58.573 40.909 0.00 0.00 0.00 3.24
139 148 3.574396 TGTTGTTGTTTGTTGGGTGAAGA 59.426 39.130 0.00 0.00 0.00 2.87
140 149 3.919216 TGTTGTTGTTTGTTGGGTGAAG 58.081 40.909 0.00 0.00 0.00 3.02
141 150 4.058817 GTTGTTGTTGTTTGTTGGGTGAA 58.941 39.130 0.00 0.00 0.00 3.18
142 151 3.555168 GGTTGTTGTTGTTTGTTGGGTGA 60.555 43.478 0.00 0.00 0.00 4.02
144 153 2.368875 TGGTTGTTGTTGTTTGTTGGGT 59.631 40.909 0.00 0.00 0.00 4.51
147 156 5.518487 GGATAGTGGTTGTTGTTGTTTGTTG 59.482 40.000 0.00 0.00 0.00 3.33
148 157 5.394773 GGGATAGTGGTTGTTGTTGTTTGTT 60.395 40.000 0.00 0.00 0.00 2.83
149 158 4.098807 GGGATAGTGGTTGTTGTTGTTTGT 59.901 41.667 0.00 0.00 0.00 2.83
151 160 4.098807 GTGGGATAGTGGTTGTTGTTGTTT 59.901 41.667 0.00 0.00 0.00 2.83
153 162 3.219281 GTGGGATAGTGGTTGTTGTTGT 58.781 45.455 0.00 0.00 0.00 3.32
154 163 3.004315 GTGTGGGATAGTGGTTGTTGTTG 59.996 47.826 0.00 0.00 0.00 3.33
155 164 3.219281 GTGTGGGATAGTGGTTGTTGTT 58.781 45.455 0.00 0.00 0.00 2.83
156 165 2.173782 TGTGTGGGATAGTGGTTGTTGT 59.826 45.455 0.00 0.00 0.00 3.32
172 619 7.124347 AGCTTTATTGATTTTTGCATGTGTG 57.876 32.000 0.00 0.00 0.00 3.82
177 624 6.532657 CCTTCGAGCTTTATTGATTTTTGCAT 59.467 34.615 0.00 0.00 0.00 3.96
188 635 3.010420 GACAAGGCCTTCGAGCTTTATT 58.990 45.455 17.29 0.00 29.89 1.40
190 637 1.671850 CGACAAGGCCTTCGAGCTTTA 60.672 52.381 20.03 0.00 37.43 1.85
191 638 0.951040 CGACAAGGCCTTCGAGCTTT 60.951 55.000 20.03 0.00 37.43 3.51
197 644 1.298157 TGCATTCGACAAGGCCTTCG 61.298 55.000 17.29 18.24 38.60 3.79
254 701 6.535540 TGTTTACCTCTACAAATAAGCACCA 58.464 36.000 0.00 0.00 0.00 4.17
266 713 5.941647 TGCCCAAGTAAATGTTTACCTCTAC 59.058 40.000 11.03 1.91 43.03 2.59
267 714 5.941647 GTGCCCAAGTAAATGTTTACCTCTA 59.058 40.000 11.03 0.00 43.03 2.43
271 718 5.243060 AGAAGTGCCCAAGTAAATGTTTACC 59.757 40.000 11.03 0.00 43.03 2.85
272 719 6.327279 AGAAGTGCCCAAGTAAATGTTTAC 57.673 37.500 7.41 7.41 42.50 2.01
273 720 6.969993 AAGAAGTGCCCAAGTAAATGTTTA 57.030 33.333 0.00 0.00 0.00 2.01
274 721 5.869649 AAGAAGTGCCCAAGTAAATGTTT 57.130 34.783 0.00 0.00 0.00 2.83
275 722 5.869649 AAAGAAGTGCCCAAGTAAATGTT 57.130 34.783 0.00 0.00 0.00 2.71
278 725 9.178758 CTCTATAAAAGAAGTGCCCAAGTAAAT 57.821 33.333 0.00 0.00 32.46 1.40
279 726 7.610305 CCTCTATAAAAGAAGTGCCCAAGTAAA 59.390 37.037 0.00 0.00 32.46 2.01
283 730 5.501156 ACCTCTATAAAAGAAGTGCCCAAG 58.499 41.667 0.00 0.00 32.46 3.61
288 735 6.037281 GGTGCTTACCTCTATAAAAGAAGTGC 59.963 42.308 0.00 0.00 31.19 4.40
292 739 6.534475 TCGGTGCTTACCTCTATAAAAGAA 57.466 37.500 0.00 0.00 32.46 2.52
293 740 6.097839 ACATCGGTGCTTACCTCTATAAAAGA 59.902 38.462 0.00 0.00 0.00 2.52
296 743 5.864418 ACATCGGTGCTTACCTCTATAAA 57.136 39.130 0.00 0.00 0.00 1.40
297 744 5.864418 AACATCGGTGCTTACCTCTATAA 57.136 39.130 0.00 0.00 0.00 0.98
327 777 8.544622 CCCTTAAATGGGTGTTTGGTAAAATAT 58.455 33.333 0.00 0.00 42.25 1.28
328 778 7.908453 CCCTTAAATGGGTGTTTGGTAAAATA 58.092 34.615 0.00 0.00 42.25 1.40
336 786 6.976351 AAAGGAGCCCTTAAATGGGTGTTTG 61.976 44.000 6.88 0.00 43.92 2.93
339 789 2.111792 AAAGGAGCCCTTAAATGGGTGT 59.888 45.455 6.88 0.00 43.92 4.16
345 795 6.933514 TTTGAATCAAAGGAGCCCTTAAAT 57.066 33.333 4.03 2.28 43.92 1.40
347 797 5.982890 CTTTGAATCAAAGGAGCCCTTAA 57.017 39.130 23.96 0.54 43.92 1.85
363 813 9.632638 CCAGAAATCCTATAGAATTCCTTTGAA 57.367 33.333 0.00 0.00 35.32 2.69
364 814 9.003145 TCCAGAAATCCTATAGAATTCCTTTGA 57.997 33.333 0.00 0.00 35.32 2.69
365 815 9.282569 CTCCAGAAATCCTATAGAATTCCTTTG 57.717 37.037 0.00 0.00 35.32 2.77
366 816 8.443979 CCTCCAGAAATCCTATAGAATTCCTTT 58.556 37.037 0.00 0.00 35.32 3.11
367 817 7.796637 TCCTCCAGAAATCCTATAGAATTCCTT 59.203 37.037 0.00 0.00 35.32 3.36
368 818 7.316841 TCCTCCAGAAATCCTATAGAATTCCT 58.683 38.462 0.00 0.00 35.32 3.36
369 819 7.560796 TCCTCCAGAAATCCTATAGAATTCC 57.439 40.000 0.00 0.00 35.32 3.01
370 820 9.447157 CAATCCTCCAGAAATCCTATAGAATTC 57.553 37.037 0.00 0.00 35.00 2.17
371 821 9.175577 TCAATCCTCCAGAAATCCTATAGAATT 57.824 33.333 0.00 0.00 0.00 2.17
372 822 8.748179 TCAATCCTCCAGAAATCCTATAGAAT 57.252 34.615 0.00 0.00 0.00 2.40
373 823 8.567198 TTCAATCCTCCAGAAATCCTATAGAA 57.433 34.615 0.00 0.00 0.00 2.10
374 824 8.567198 TTTCAATCCTCCAGAAATCCTATAGA 57.433 34.615 0.00 0.00 0.00 1.98
375 825 9.447157 GATTTCAATCCTCCAGAAATCCTATAG 57.553 37.037 13.38 0.00 45.88 1.31
382 832 9.705103 TCTTAATGATTTCAATCCTCCAGAAAT 57.295 29.630 0.00 0.00 42.74 2.17
383 833 9.532494 TTCTTAATGATTTCAATCCTCCAGAAA 57.468 29.630 0.00 0.00 35.92 2.52
384 834 9.705103 ATTCTTAATGATTTCAATCCTCCAGAA 57.295 29.630 0.00 1.83 34.50 3.02
385 835 9.705103 AATTCTTAATGATTTCAATCCTCCAGA 57.295 29.630 0.00 0.00 34.50 3.86
401 851 9.586435 GGACCAACATAGGAAAAATTCTTAATG 57.414 33.333 0.00 0.00 0.00 1.90
402 852 9.547279 AGGACCAACATAGGAAAAATTCTTAAT 57.453 29.630 0.00 0.00 0.00 1.40
403 853 8.950007 AGGACCAACATAGGAAAAATTCTTAA 57.050 30.769 0.00 0.00 0.00 1.85
404 854 8.950007 AAGGACCAACATAGGAAAAATTCTTA 57.050 30.769 0.00 0.00 0.00 2.10
405 855 7.855784 AAGGACCAACATAGGAAAAATTCTT 57.144 32.000 0.00 0.00 0.00 2.52
406 856 7.508977 TCAAAGGACCAACATAGGAAAAATTCT 59.491 33.333 0.00 0.00 0.00 2.40
407 857 7.666623 TCAAAGGACCAACATAGGAAAAATTC 58.333 34.615 0.00 0.00 0.00 2.17
408 858 7.610580 TCAAAGGACCAACATAGGAAAAATT 57.389 32.000 0.00 0.00 0.00 1.82
409 859 7.797121 ATCAAAGGACCAACATAGGAAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
410 860 7.610580 AATCAAAGGACCAACATAGGAAAAA 57.389 32.000 0.00 0.00 0.00 1.94
411 861 7.610580 AAATCAAAGGACCAACATAGGAAAA 57.389 32.000 0.00 0.00 0.00 2.29
412 862 8.893563 ATAAATCAAAGGACCAACATAGGAAA 57.106 30.769 0.00 0.00 0.00 3.13
413 863 9.627123 CTATAAATCAAAGGACCAACATAGGAA 57.373 33.333 0.00 0.00 0.00 3.36
414 864 8.217799 CCTATAAATCAAAGGACCAACATAGGA 58.782 37.037 0.00 0.00 35.39 2.94
415 865 8.217799 TCCTATAAATCAAAGGACCAACATAGG 58.782 37.037 0.00 0.00 34.46 2.57
416 866 9.799106 ATCCTATAAATCAAAGGACCAACATAG 57.201 33.333 0.00 0.00 42.08 2.23
418 868 8.917088 CAATCCTATAAATCAAAGGACCAACAT 58.083 33.333 0.00 0.00 42.08 2.71
419 869 7.341769 CCAATCCTATAAATCAAAGGACCAACA 59.658 37.037 0.00 0.00 42.08 3.33
420 870 7.559897 TCCAATCCTATAAATCAAAGGACCAAC 59.440 37.037 0.00 0.00 42.08 3.77
421 871 7.647827 TCCAATCCTATAAATCAAAGGACCAA 58.352 34.615 0.00 0.00 42.08 3.67
422 872 7.219601 TCCAATCCTATAAATCAAAGGACCA 57.780 36.000 0.00 0.00 42.08 4.02
423 873 8.166726 AGATCCAATCCTATAAATCAAAGGACC 58.833 37.037 0.00 0.00 42.08 4.46
424 874 9.225436 GAGATCCAATCCTATAAATCAAAGGAC 57.775 37.037 0.00 0.00 42.08 3.85
425 875 8.948362 TGAGATCCAATCCTATAAATCAAAGGA 58.052 33.333 0.00 0.00 43.38 3.36
426 876 9.750783 ATGAGATCCAATCCTATAAATCAAAGG 57.249 33.333 0.00 0.00 0.00 3.11
430 880 9.788815 TCCTATGAGATCCAATCCTATAAATCA 57.211 33.333 0.00 0.00 0.00 2.57
486 936 9.847224 GGAGTGGATGTTAGATTTCCTATAAAA 57.153 33.333 0.00 0.00 0.00 1.52
487 937 8.998814 TGGAGTGGATGTTAGATTTCCTATAAA 58.001 33.333 0.00 0.00 0.00 1.40
488 938 8.561536 TGGAGTGGATGTTAGATTTCCTATAA 57.438 34.615 0.00 0.00 0.00 0.98
489 939 8.429641 GTTGGAGTGGATGTTAGATTTCCTATA 58.570 37.037 0.00 0.00 0.00 1.31
490 940 7.283329 GTTGGAGTGGATGTTAGATTTCCTAT 58.717 38.462 0.00 0.00 0.00 2.57
491 941 6.352737 GGTTGGAGTGGATGTTAGATTTCCTA 60.353 42.308 0.00 0.00 0.00 2.94
492 942 5.501156 GTTGGAGTGGATGTTAGATTTCCT 58.499 41.667 0.00 0.00 0.00 3.36
493 943 4.640647 GGTTGGAGTGGATGTTAGATTTCC 59.359 45.833 0.00 0.00 0.00 3.13
494 944 5.501156 AGGTTGGAGTGGATGTTAGATTTC 58.499 41.667 0.00 0.00 0.00 2.17
495 945 5.251700 AGAGGTTGGAGTGGATGTTAGATTT 59.748 40.000 0.00 0.00 0.00 2.17
496 946 4.785376 AGAGGTTGGAGTGGATGTTAGATT 59.215 41.667 0.00 0.00 0.00 2.40
497 947 4.366267 AGAGGTTGGAGTGGATGTTAGAT 58.634 43.478 0.00 0.00 0.00 1.98
498 948 3.791320 AGAGGTTGGAGTGGATGTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
499 949 4.559862 AAGAGGTTGGAGTGGATGTTAG 57.440 45.455 0.00 0.00 0.00 2.34
500 950 4.993705 AAAGAGGTTGGAGTGGATGTTA 57.006 40.909 0.00 0.00 0.00 2.41
501 951 3.884037 AAAGAGGTTGGAGTGGATGTT 57.116 42.857 0.00 0.00 0.00 2.71
502 952 3.884037 AAAAGAGGTTGGAGTGGATGT 57.116 42.857 0.00 0.00 0.00 3.06
503 953 5.070001 TGTAAAAAGAGGTTGGAGTGGATG 58.930 41.667 0.00 0.00 0.00 3.51
504 954 5.319043 TGTAAAAAGAGGTTGGAGTGGAT 57.681 39.130 0.00 0.00 0.00 3.41
505 955 4.781775 TGTAAAAAGAGGTTGGAGTGGA 57.218 40.909 0.00 0.00 0.00 4.02
506 956 6.405278 AATTGTAAAAAGAGGTTGGAGTGG 57.595 37.500 0.00 0.00 0.00 4.00
507 957 6.265422 AGGAATTGTAAAAAGAGGTTGGAGTG 59.735 38.462 0.00 0.00 0.00 3.51
508 958 6.373759 AGGAATTGTAAAAAGAGGTTGGAGT 58.626 36.000 0.00 0.00 0.00 3.85
509 959 6.901081 AGGAATTGTAAAAAGAGGTTGGAG 57.099 37.500 0.00 0.00 0.00 3.86
510 960 7.496747 CAAAGGAATTGTAAAAAGAGGTTGGA 58.503 34.615 0.00 0.00 34.16 3.53
511 961 6.202762 GCAAAGGAATTGTAAAAAGAGGTTGG 59.797 38.462 0.00 0.00 41.32 3.77
512 962 6.986231 AGCAAAGGAATTGTAAAAAGAGGTTG 59.014 34.615 0.00 0.00 41.32 3.77
513 963 7.124573 AGCAAAGGAATTGTAAAAAGAGGTT 57.875 32.000 0.00 0.00 41.32 3.50
514 964 6.731292 AGCAAAGGAATTGTAAAAAGAGGT 57.269 33.333 0.00 0.00 41.32 3.85
515 965 8.437360 AAAAGCAAAGGAATTGTAAAAAGAGG 57.563 30.769 0.00 0.00 41.32 3.69
544 994 6.822667 ATTAGCATGAAGTGTTTGATGACA 57.177 33.333 0.00 0.00 30.48 3.58
545 995 7.484007 CAGAATTAGCATGAAGTGTTTGATGAC 59.516 37.037 0.00 0.00 30.48 3.06
546 996 7.175467 ACAGAATTAGCATGAAGTGTTTGATGA 59.825 33.333 0.00 0.00 30.48 2.92
547 997 7.310664 ACAGAATTAGCATGAAGTGTTTGATG 58.689 34.615 0.00 0.00 31.92 3.07
548 998 7.458409 ACAGAATTAGCATGAAGTGTTTGAT 57.542 32.000 0.00 0.00 0.00 2.57
549 999 6.882610 ACAGAATTAGCATGAAGTGTTTGA 57.117 33.333 0.00 0.00 0.00 2.69
550 1000 7.119699 TCCTACAGAATTAGCATGAAGTGTTTG 59.880 37.037 0.00 0.00 0.00 2.93
551 1001 7.168219 TCCTACAGAATTAGCATGAAGTGTTT 58.832 34.615 0.00 0.00 0.00 2.83
552 1002 6.711277 TCCTACAGAATTAGCATGAAGTGTT 58.289 36.000 0.00 0.00 0.00 3.32
553 1003 6.299805 TCCTACAGAATTAGCATGAAGTGT 57.700 37.500 0.00 0.00 0.00 3.55
554 1004 7.496920 TGAATCCTACAGAATTAGCATGAAGTG 59.503 37.037 0.00 0.00 0.00 3.16
555 1005 7.568349 TGAATCCTACAGAATTAGCATGAAGT 58.432 34.615 0.00 0.00 0.00 3.01
556 1006 8.504815 CATGAATCCTACAGAATTAGCATGAAG 58.495 37.037 0.00 0.00 33.23 3.02
557 1007 7.994911 ACATGAATCCTACAGAATTAGCATGAA 59.005 33.333 0.00 0.00 34.93 2.57
558 1008 7.443272 CACATGAATCCTACAGAATTAGCATGA 59.557 37.037 0.00 0.00 34.93 3.07
559 1009 7.228108 ACACATGAATCCTACAGAATTAGCATG 59.772 37.037 0.00 0.00 36.43 4.06
560 1010 7.228108 CACACATGAATCCTACAGAATTAGCAT 59.772 37.037 0.00 0.00 0.00 3.79
561 1011 6.539826 CACACATGAATCCTACAGAATTAGCA 59.460 38.462 0.00 0.00 0.00 3.49
562 1012 6.512415 GCACACATGAATCCTACAGAATTAGC 60.512 42.308 0.00 0.00 0.00 3.09
563 1013 6.539826 TGCACACATGAATCCTACAGAATTAG 59.460 38.462 0.00 0.00 0.00 1.73
564 1014 6.413892 TGCACACATGAATCCTACAGAATTA 58.586 36.000 0.00 0.00 0.00 1.40
565 1015 5.255687 TGCACACATGAATCCTACAGAATT 58.744 37.500 0.00 0.00 0.00 2.17
566 1016 4.847198 TGCACACATGAATCCTACAGAAT 58.153 39.130 0.00 0.00 0.00 2.40
567 1017 4.284829 TGCACACATGAATCCTACAGAA 57.715 40.909 0.00 0.00 0.00 3.02
568 1018 3.979101 TGCACACATGAATCCTACAGA 57.021 42.857 0.00 0.00 0.00 3.41
585 1035 1.357137 TAGGGTTGGAGTGACATGCA 58.643 50.000 0.00 0.00 0.00 3.96
586 1036 2.717639 ATAGGGTTGGAGTGACATGC 57.282 50.000 0.00 0.00 0.00 4.06
587 1037 5.359194 AAGTATAGGGTTGGAGTGACATG 57.641 43.478 0.00 0.00 0.00 3.21
588 1038 6.388619 AAAAGTATAGGGTTGGAGTGACAT 57.611 37.500 0.00 0.00 0.00 3.06
589 1039 5.280317 GGAAAAGTATAGGGTTGGAGTGACA 60.280 44.000 0.00 0.00 0.00 3.58
590 1040 5.045797 AGGAAAAGTATAGGGTTGGAGTGAC 60.046 44.000 0.00 0.00 0.00 3.67
591 1041 5.098663 AGGAAAAGTATAGGGTTGGAGTGA 58.901 41.667 0.00 0.00 0.00 3.41
592 1042 5.437191 AGGAAAAGTATAGGGTTGGAGTG 57.563 43.478 0.00 0.00 0.00 3.51
593 1043 7.147355 GGAATAGGAAAAGTATAGGGTTGGAGT 60.147 40.741 0.00 0.00 0.00 3.85
594 1044 7.072581 AGGAATAGGAAAAGTATAGGGTTGGAG 59.927 40.741 0.00 0.00 0.00 3.86
595 1045 6.912561 AGGAATAGGAAAAGTATAGGGTTGGA 59.087 38.462 0.00 0.00 0.00 3.53
596 1046 7.150447 AGGAATAGGAAAAGTATAGGGTTGG 57.850 40.000 0.00 0.00 0.00 3.77
597 1047 7.871463 CGTAGGAATAGGAAAAGTATAGGGTTG 59.129 40.741 0.00 0.00 0.00 3.77
598 1048 7.786464 TCGTAGGAATAGGAAAAGTATAGGGTT 59.214 37.037 0.00 0.00 0.00 4.11
599 1049 7.300658 TCGTAGGAATAGGAAAAGTATAGGGT 58.699 38.462 0.00 0.00 0.00 4.34
600 1050 7.771927 TCGTAGGAATAGGAAAAGTATAGGG 57.228 40.000 0.00 0.00 0.00 3.53
605 1055 9.947433 TTTCAAATCGTAGGAATAGGAAAAGTA 57.053 29.630 0.00 0.00 0.00 2.24
606 1056 8.857694 TTTCAAATCGTAGGAATAGGAAAAGT 57.142 30.769 0.00 0.00 0.00 2.66
609 1059 8.899771 GGATTTTCAAATCGTAGGAATAGGAAA 58.100 33.333 6.25 0.00 44.43 3.13
610 1060 8.272173 AGGATTTTCAAATCGTAGGAATAGGAA 58.728 33.333 5.82 0.00 44.43 3.36
611 1061 7.715249 CAGGATTTTCAAATCGTAGGAATAGGA 59.285 37.037 7.06 0.00 44.43 2.94
612 1062 7.715249 TCAGGATTTTCAAATCGTAGGAATAGG 59.285 37.037 7.06 0.00 44.43 2.57
613 1063 8.662781 TCAGGATTTTCAAATCGTAGGAATAG 57.337 34.615 7.06 0.00 44.43 1.73
614 1064 8.482943 TCTCAGGATTTTCAAATCGTAGGAATA 58.517 33.333 7.06 0.00 44.43 1.75
615 1065 7.338710 TCTCAGGATTTTCAAATCGTAGGAAT 58.661 34.615 7.06 0.00 44.43 3.01
616 1066 6.707290 TCTCAGGATTTTCAAATCGTAGGAA 58.293 36.000 7.06 0.00 44.43 3.36
617 1067 6.294361 TCTCAGGATTTTCAAATCGTAGGA 57.706 37.500 7.06 6.22 44.43 2.94
618 1068 6.985188 TTCTCAGGATTTTCAAATCGTAGG 57.015 37.500 7.06 4.47 44.43 3.18
619 1069 8.201554 TGATTCTCAGGATTTTCAAATCGTAG 57.798 34.615 7.06 4.69 44.43 3.51
620 1070 8.560355 TTGATTCTCAGGATTTTCAAATCGTA 57.440 30.769 7.06 0.00 44.43 3.43
621 1071 7.452880 TTGATTCTCAGGATTTTCAAATCGT 57.547 32.000 6.25 4.31 44.43 3.73
622 1072 8.239314 TCTTTGATTCTCAGGATTTTCAAATCG 58.761 33.333 6.25 0.00 44.43 3.34
623 1073 9.570488 CTCTTTGATTCTCAGGATTTTCAAATC 57.430 33.333 3.97 3.97 43.12 2.17
624 1074 8.529476 CCTCTTTGATTCTCAGGATTTTCAAAT 58.471 33.333 0.00 0.00 0.00 2.32
625 1075 7.039504 CCCTCTTTGATTCTCAGGATTTTCAAA 60.040 37.037 0.00 0.00 0.00 2.69
626 1076 6.435277 CCCTCTTTGATTCTCAGGATTTTCAA 59.565 38.462 0.00 0.00 0.00 2.69
627 1077 5.948162 CCCTCTTTGATTCTCAGGATTTTCA 59.052 40.000 0.00 0.00 0.00 2.69
628 1078 5.163571 GCCCTCTTTGATTCTCAGGATTTTC 60.164 44.000 0.00 0.00 0.00 2.29
629 1079 4.708909 GCCCTCTTTGATTCTCAGGATTTT 59.291 41.667 0.00 0.00 0.00 1.82
630 1080 4.276642 GCCCTCTTTGATTCTCAGGATTT 58.723 43.478 0.00 0.00 0.00 2.17
631 1081 3.372458 GGCCCTCTTTGATTCTCAGGATT 60.372 47.826 0.00 0.00 0.00 3.01
632 1082 2.174424 GGCCCTCTTTGATTCTCAGGAT 59.826 50.000 0.00 0.00 0.00 3.24
633 1083 1.561542 GGCCCTCTTTGATTCTCAGGA 59.438 52.381 0.00 0.00 0.00 3.86
634 1084 1.563410 AGGCCCTCTTTGATTCTCAGG 59.437 52.381 0.00 0.00 0.00 3.86
635 1085 2.238144 TGAGGCCCTCTTTGATTCTCAG 59.762 50.000 12.94 0.00 0.00 3.35
636 1086 2.269023 TGAGGCCCTCTTTGATTCTCA 58.731 47.619 12.94 0.00 0.00 3.27
637 1087 3.013219 GTTGAGGCCCTCTTTGATTCTC 58.987 50.000 12.94 0.00 0.00 2.87
638 1088 2.376518 TGTTGAGGCCCTCTTTGATTCT 59.623 45.455 12.94 0.00 0.00 2.40
639 1089 2.489722 GTGTTGAGGCCCTCTTTGATTC 59.510 50.000 12.94 0.00 0.00 2.52
640 1090 2.519013 GTGTTGAGGCCCTCTTTGATT 58.481 47.619 12.94 0.00 0.00 2.57
641 1091 1.272147 GGTGTTGAGGCCCTCTTTGAT 60.272 52.381 12.94 0.00 0.00 2.57
642 1092 0.110486 GGTGTTGAGGCCCTCTTTGA 59.890 55.000 12.94 0.00 0.00 2.69
643 1093 0.111253 AGGTGTTGAGGCCCTCTTTG 59.889 55.000 12.94 0.00 0.00 2.77
644 1094 0.853530 AAGGTGTTGAGGCCCTCTTT 59.146 50.000 12.94 0.00 0.00 2.52
645 1095 0.111253 CAAGGTGTTGAGGCCCTCTT 59.889 55.000 12.94 0.00 35.46 2.85
646 1096 1.763770 CAAGGTGTTGAGGCCCTCT 59.236 57.895 12.94 0.00 35.46 3.69
647 1097 1.973812 GCAAGGTGTTGAGGCCCTC 60.974 63.158 2.98 2.98 35.46 4.30
648 1098 2.116125 GCAAGGTGTTGAGGCCCT 59.884 61.111 0.00 0.00 35.46 5.19
649 1099 2.203480 TGCAAGGTGTTGAGGCCC 60.203 61.111 0.00 0.00 35.46 5.80
650 1100 1.529244 ACTGCAAGGTGTTGAGGCC 60.529 57.895 0.00 0.00 39.30 5.19
651 1101 1.103398 ACACTGCAAGGTGTTGAGGC 61.103 55.000 5.94 0.00 46.71 4.70
652 1102 1.873591 GTACACTGCAAGGTGTTGAGG 59.126 52.381 15.93 0.00 46.71 3.86
653 1103 2.560504 TGTACACTGCAAGGTGTTGAG 58.439 47.619 15.93 0.00 46.71 3.02
654 1104 2.700722 TGTACACTGCAAGGTGTTGA 57.299 45.000 15.93 2.20 46.71 3.18
655 1105 3.694734 CTTTGTACACTGCAAGGTGTTG 58.305 45.455 15.93 0.00 46.71 3.33
656 1106 2.099098 GCTTTGTACACTGCAAGGTGTT 59.901 45.455 15.93 2.60 46.71 3.32
697 1147 5.733620 TGAGTAGTCTTTCGGGTAACAAT 57.266 39.130 0.00 0.00 39.74 2.71
707 1157 5.157067 GGCAGCAAAAATGAGTAGTCTTTC 58.843 41.667 0.00 0.00 0.00 2.62
754 1421 4.282449 TCTCCACGGAGTCAAAGATTTGTA 59.718 41.667 12.77 0.00 41.61 2.41
758 1425 2.028020 GGTCTCCACGGAGTCAAAGATT 60.028 50.000 12.77 0.00 41.61 2.40
760 1427 0.966920 GGTCTCCACGGAGTCAAAGA 59.033 55.000 12.77 0.00 41.61 2.52
930 1622 2.054453 GTGGAGGGGAAGCAATGCC 61.054 63.158 0.00 0.00 39.22 4.40
977 1670 2.552367 GATAGTTATGGGGAGGGAGGG 58.448 57.143 0.00 0.00 0.00 4.30
1043 1736 2.005451 CTGAAGAACGGCAATCTGAGG 58.995 52.381 0.00 0.00 0.00 3.86
1053 1746 1.337823 ACGGATTGGACTGAAGAACGG 60.338 52.381 0.00 0.00 0.00 4.44
1063 1756 2.308039 GCGGCGATACGGATTGGAC 61.308 63.158 12.98 0.00 0.00 4.02
1122 1842 4.195334 CCCTTCATCCCCCGCCTG 62.195 72.222 0.00 0.00 0.00 4.85
1395 2121 3.764160 CTCATCCCCCTTCGCAGCC 62.764 68.421 0.00 0.00 0.00 4.85
1398 2124 3.797353 GCCTCATCCCCCTTCGCA 61.797 66.667 0.00 0.00 0.00 5.10
1907 2670 1.839994 AGCGAGAAATCTGATCCCCAA 59.160 47.619 0.00 0.00 0.00 4.12
1908 2671 1.414181 GAGCGAGAAATCTGATCCCCA 59.586 52.381 0.00 0.00 0.00 4.96
1912 2676 2.050691 GCTCGAGCGAGAAATCTGATC 58.949 52.381 23.61 0.00 44.53 2.92
1945 2709 0.526524 CGACGAGATTCAGTCAGGGC 60.527 60.000 11.19 0.00 37.23 5.19
1949 2713 1.254026 AACCCGACGAGATTCAGTCA 58.746 50.000 0.00 0.00 37.23 3.41
1950 2714 2.365408 AAACCCGACGAGATTCAGTC 57.635 50.000 0.00 3.18 0.00 3.51
1951 2715 2.036733 TCAAAACCCGACGAGATTCAGT 59.963 45.455 0.00 0.00 0.00 3.41
1952 2716 2.683968 TCAAAACCCGACGAGATTCAG 58.316 47.619 0.00 0.00 0.00 3.02
1964 2728 1.622811 TGCCACCATCATTCAAAACCC 59.377 47.619 0.00 0.00 0.00 4.11
1977 2741 4.323477 GCCGTGTACCTGCCACCA 62.323 66.667 0.00 0.00 0.00 4.17
1979 2743 4.675029 ACGCCGTGTACCTGCCAC 62.675 66.667 0.00 0.00 0.00 5.01
2317 3094 4.144297 CACTAGGAGAGAGAGAAGGGATG 58.856 52.174 0.00 0.00 0.00 3.51
2319 3096 2.512056 CCACTAGGAGAGAGAGAAGGGA 59.488 54.545 0.00 0.00 36.89 4.20
2369 3146 0.659427 CCACATGCCGACATCATCAC 59.341 55.000 0.00 0.00 32.87 3.06
2404 3183 2.616969 GCTTGGTCGAGCTTTCACA 58.383 52.632 16.64 0.00 39.57 3.58
2433 3212 4.036498 CAGCAATTCATTCCTCTCATCACC 59.964 45.833 0.00 0.00 0.00 4.02
2435 3214 4.638865 CACAGCAATTCATTCCTCTCATCA 59.361 41.667 0.00 0.00 0.00 3.07
2436 3215 4.036498 CCACAGCAATTCATTCCTCTCATC 59.964 45.833 0.00 0.00 0.00 2.92
2437 3216 3.952323 CCACAGCAATTCATTCCTCTCAT 59.048 43.478 0.00 0.00 0.00 2.90
2479 3258 2.072298 CTGAGAAAAGGAGCAACGGAG 58.928 52.381 0.00 0.00 0.00 4.63
2505 3284 8.380644 CGACGCGGAATAAATTCATAATAGAAT 58.619 33.333 12.47 0.00 39.81 2.40
2508 3287 7.045725 ACGACGCGGAATAAATTCATAATAG 57.954 36.000 12.47 0.00 38.53 1.73
2510 3289 5.388061 CGACGACGCGGAATAAATTCATAAT 60.388 40.000 12.47 0.00 38.53 1.28
2515 3294 2.259730 CGACGACGCGGAATAAATTC 57.740 50.000 12.47 0.00 36.08 2.17
2535 3314 0.928451 GCACAGGCGACGTGAAAAAC 60.928 55.000 15.83 0.00 37.13 2.43
2558 3337 3.071023 TCATTCCGGTTCACTTCTTGTCT 59.929 43.478 0.00 0.00 0.00 3.41
2567 3346 3.181514 CGGTGTTAATCATTCCGGTTCAC 60.182 47.826 0.00 0.00 37.92 3.18
2568 3347 3.004171 CGGTGTTAATCATTCCGGTTCA 58.996 45.455 0.00 0.00 37.92 3.18
2569 3348 3.668596 CGGTGTTAATCATTCCGGTTC 57.331 47.619 0.00 0.00 37.92 3.62
2578 5155 0.035820 GTGCCCTCCGGTGTTAATCA 60.036 55.000 0.00 0.00 0.00 2.57
2582 5159 0.251922 AGTAGTGCCCTCCGGTGTTA 60.252 55.000 0.00 0.00 0.00 2.41
2617 5194 1.619827 ACCACTGCCCATCACATTTTG 59.380 47.619 0.00 0.00 0.00 2.44
2619 5196 1.259609 CACCACTGCCCATCACATTT 58.740 50.000 0.00 0.00 0.00 2.32
2620 5197 0.112995 ACACCACTGCCCATCACATT 59.887 50.000 0.00 0.00 0.00 2.71
2623 5200 0.250901 AAGACACCACTGCCCATCAC 60.251 55.000 0.00 0.00 0.00 3.06
2640 5217 3.489416 CGATCAATGCAATGCAATCCAAG 59.511 43.478 13.45 0.00 43.62 3.61
2673 5250 2.202623 GTGCTGCCGACTAGACCG 60.203 66.667 0.00 0.00 0.00 4.79
2717 5326 0.659427 CATCAGTAATGGCAGCACCG 59.341 55.000 0.00 0.00 43.94 4.94
2917 5564 0.671251 CCTCTCTCTATCCGTGGTGC 59.329 60.000 0.00 0.00 0.00 5.01
2926 5573 1.078656 GCCCAGGATCCCTCTCTCTAT 59.921 57.143 8.55 0.00 0.00 1.98
2936 5583 2.114838 GATGCAGGCCCAGGATCC 59.885 66.667 14.18 2.48 0.00 3.36
2937 5584 2.281345 CGATGCAGGCCCAGGATC 60.281 66.667 14.89 14.89 0.00 3.36
3016 5666 2.612212 CACAACACCCTGTGTACAAGAC 59.388 50.000 0.00 0.00 46.79 3.01
3133 5880 9.678941 GAACCTTAAAGAGAAACAATGGTTAAG 57.321 33.333 0.00 0.00 35.82 1.85
3159 5914 1.097232 TGCTGCAGATTTCCAATCGG 58.903 50.000 20.43 0.00 0.00 4.18
3161 5916 4.650754 AGAATGCTGCAGATTTCCAATC 57.349 40.909 20.43 8.04 0.00 2.67
3181 5936 8.504815 ACACGTAGACACAATATACATAGCTAG 58.495 37.037 0.00 0.00 0.00 3.42
3193 5948 2.289547 GCAACCAACACGTAGACACAAT 59.710 45.455 0.00 0.00 0.00 2.71
3218 5979 2.477863 GGCGCACATATGTTTCAGGAAC 60.478 50.000 10.83 0.00 38.78 3.62
3256 6019 3.244526 TGAGGTGATGCATACTTGTGTGT 60.245 43.478 0.00 0.00 0.00 3.72
3257 6020 3.337358 TGAGGTGATGCATACTTGTGTG 58.663 45.455 0.00 0.00 0.00 3.82
3258 6021 3.701205 TGAGGTGATGCATACTTGTGT 57.299 42.857 0.00 0.00 0.00 3.72
3277 6040 2.667171 CGGCCAGGTTTTTATCGTGTTG 60.667 50.000 2.24 0.00 0.00 3.33
3284 6047 4.854587 TGGCGGCCAGGTTTTTAT 57.145 50.000 19.77 0.00 0.00 1.40
3305 6068 3.509575 TGGCGTCCAATGCTCTTTTTATT 59.490 39.130 0.00 0.00 0.00 1.40
3306 6069 3.088532 TGGCGTCCAATGCTCTTTTTAT 58.911 40.909 0.00 0.00 0.00 1.40
3307 6070 2.509569 TGGCGTCCAATGCTCTTTTTA 58.490 42.857 0.00 0.00 0.00 1.52
3332 6095 1.595466 GCATCTGCTCTCCTGAATGG 58.405 55.000 0.00 0.00 38.21 3.16
3366 6136 3.251571 GCTTCATTTCGTAACTCGTCCT 58.748 45.455 0.00 0.00 40.80 3.85
3368 6138 2.912967 TCGCTTCATTTCGTAACTCGTC 59.087 45.455 0.00 0.00 40.80 4.20
3371 6141 5.511088 TTCTTCGCTTCATTTCGTAACTC 57.489 39.130 0.00 0.00 0.00 3.01
3372 6142 5.917541 TTTCTTCGCTTCATTTCGTAACT 57.082 34.783 0.00 0.00 0.00 2.24
3374 6144 5.467399 TCCTTTTCTTCGCTTCATTTCGTAA 59.533 36.000 0.00 0.00 0.00 3.18
3384 6154 3.142174 CCTGTTCTCCTTTTCTTCGCTT 58.858 45.455 0.00 0.00 0.00 4.68
3385 6155 2.104963 ACCTGTTCTCCTTTTCTTCGCT 59.895 45.455 0.00 0.00 0.00 4.93
3386 6156 2.495084 ACCTGTTCTCCTTTTCTTCGC 58.505 47.619 0.00 0.00 0.00 4.70
3387 6157 3.498777 GGAACCTGTTCTCCTTTTCTTCG 59.501 47.826 9.68 0.00 39.45 3.79
3431 6201 0.872021 CTACATCGCACTCGGAAGCC 60.872 60.000 0.00 0.00 36.13 4.35
3432 6202 1.483424 GCTACATCGCACTCGGAAGC 61.483 60.000 0.00 0.00 36.13 3.86
3433 6203 0.101399 AGCTACATCGCACTCGGAAG 59.899 55.000 0.00 0.00 36.13 3.46
3434 6204 1.385528 TAGCTACATCGCACTCGGAA 58.614 50.000 0.00 0.00 36.13 4.30
3435 6205 1.065102 GTTAGCTACATCGCACTCGGA 59.935 52.381 0.00 0.00 36.13 4.55
3439 6209 1.825474 AGTGGTTAGCTACATCGCACT 59.175 47.619 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.