Multiple sequence alignment - TraesCS7A01G442800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G442800 chr7A 100.000 2314 0 0 1 2314 637290236 637287923 0.000000e+00 4274
1 TraesCS7A01G442800 chrUn 98.942 1795 18 1 188 1982 170994845 170993052 0.000000e+00 3208
2 TraesCS7A01G442800 chrUn 97.409 193 5 0 1 193 209403203 209403011 1.710000e-86 329
3 TraesCS7A01G442800 chrUn 97.409 193 5 0 1 193 267895105 267895297 1.710000e-86 329
4 TraesCS7A01G442800 chrUn 100.000 56 0 0 1977 2032 170992987 170993042 1.130000e-18 104
5 TraesCS7A01G442800 chrUn 100.000 56 0 0 1977 2032 229247404 229247349 1.130000e-18 104
6 TraesCS7A01G442800 chrUn 100.000 56 0 0 1977 2032 289218371 289218316 1.130000e-18 104
7 TraesCS7A01G442800 chrUn 100.000 56 0 0 1977 2032 408220774 408220719 1.130000e-18 104
8 TraesCS7A01G442800 chr7D 98.941 1794 18 1 186 1979 626724650 626726442 0.000000e+00 3206
9 TraesCS7A01G442800 chr7D 98.719 1796 22 1 188 1982 382073192 382071397 0.000000e+00 3188
10 TraesCS7A01G442800 chr7D 98.772 1792 22 0 188 1979 626630400 626632191 0.000000e+00 3188
11 TraesCS7A01G442800 chr7D 97.927 193 4 0 1 193 579004691 579004883 3.680000e-88 335
12 TraesCS7A01G442800 chr7B 98.772 1792 22 0 188 1979 644446599 644448390 0.000000e+00 3188
13 TraesCS7A01G442800 chr7B 98.772 1792 22 0 188 1979 743096062 743097853 0.000000e+00 3188
14 TraesCS7A01G442800 chr7B 90.068 292 18 9 2023 2310 596603927 596603643 3.630000e-98 368
15 TraesCS7A01G442800 chr1D 98.717 1792 23 0 188 1979 212459026 212460817 0.000000e+00 3182
16 TraesCS7A01G442800 chr1D 100.000 56 0 0 1977 2032 212460885 212460830 1.130000e-18 104
17 TraesCS7A01G442800 chr6B 98.496 1795 26 1 188 1982 307014351 307012558 0.000000e+00 3164
18 TraesCS7A01G442800 chr6B 98.446 193 3 0 1 193 265004793 265004601 7.920000e-90 340
19 TraesCS7A01G442800 chr3D 98.160 1793 31 2 188 1979 602873219 602875010 0.000000e+00 3127
20 TraesCS7A01G442800 chr3D 97.927 193 4 0 1 193 308431467 308431659 3.680000e-88 335
21 TraesCS7A01G442800 chr5A 98.446 193 3 0 1 193 614336835 614336643 7.920000e-90 340
22 TraesCS7A01G442800 chr2B 98.446 193 3 0 1 193 760927252 760927060 7.920000e-90 340
23 TraesCS7A01G442800 chr1B 98.446 193 3 0 1 193 67024163 67024355 7.920000e-90 340
24 TraesCS7A01G442800 chr1A 97.927 193 4 0 1 193 94595063 94595255 3.680000e-88 335
25 TraesCS7A01G442800 chr1A 100.000 56 0 0 1977 2032 94565000 94565055 1.130000e-18 104
26 TraesCS7A01G442800 chr1A 100.000 56 0 0 1977 2032 94796750 94796805 1.130000e-18 104
27 TraesCS7A01G442800 chr4D 100.000 56 0 0 1977 2032 35591870 35591815 1.130000e-18 104
28 TraesCS7A01G442800 chr4D 100.000 56 0 0 1977 2032 123386211 123386266 1.130000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G442800 chr7A 637287923 637290236 2313 True 4274 4274 100.000 1 2314 1 chr7A.!!$R1 2313
1 TraesCS7A01G442800 chrUn 170993052 170994845 1793 True 3208 3208 98.942 188 1982 1 chrUn.!!$R1 1794
2 TraesCS7A01G442800 chr7D 626724650 626726442 1792 False 3206 3206 98.941 186 1979 1 chr7D.!!$F3 1793
3 TraesCS7A01G442800 chr7D 382071397 382073192 1795 True 3188 3188 98.719 188 1982 1 chr7D.!!$R1 1794
4 TraesCS7A01G442800 chr7D 626630400 626632191 1791 False 3188 3188 98.772 188 1979 1 chr7D.!!$F2 1791
5 TraesCS7A01G442800 chr7B 644446599 644448390 1791 False 3188 3188 98.772 188 1979 1 chr7B.!!$F1 1791
6 TraesCS7A01G442800 chr7B 743096062 743097853 1791 False 3188 3188 98.772 188 1979 1 chr7B.!!$F2 1791
7 TraesCS7A01G442800 chr1D 212459026 212460817 1791 False 3182 3182 98.717 188 1979 1 chr1D.!!$F1 1791
8 TraesCS7A01G442800 chr6B 307012558 307014351 1793 True 3164 3164 98.496 188 1982 1 chr6B.!!$R2 1794
9 TraesCS7A01G442800 chr3D 602873219 602875010 1791 False 3127 3127 98.160 188 1979 1 chr3D.!!$F2 1791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.033642 GGTCCACTATTAGCGAGGCC 59.966 60.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 1991 0.039256 GGCACAGCGCTTTCAATCAA 60.039 50.0 7.5 0.0 41.91 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.837896 AAGCTTCAAACTCCTTGCTAAC 57.162 40.909 0.00 0.00 34.76 2.34
22 23 3.149981 AGCTTCAAACTCCTTGCTAACC 58.850 45.455 0.00 0.00 34.76 2.85
23 24 2.095718 GCTTCAAACTCCTTGCTAACCG 60.096 50.000 0.00 0.00 34.76 4.44
24 25 3.399330 CTTCAAACTCCTTGCTAACCGA 58.601 45.455 0.00 0.00 34.76 4.69
25 26 3.695830 TCAAACTCCTTGCTAACCGAT 57.304 42.857 0.00 0.00 34.76 4.18
26 27 4.811969 TCAAACTCCTTGCTAACCGATA 57.188 40.909 0.00 0.00 34.76 2.92
27 28 5.155278 TCAAACTCCTTGCTAACCGATAA 57.845 39.130 0.00 0.00 34.76 1.75
28 29 5.553123 TCAAACTCCTTGCTAACCGATAAA 58.447 37.500 0.00 0.00 34.76 1.40
29 30 5.998981 TCAAACTCCTTGCTAACCGATAAAA 59.001 36.000 0.00 0.00 34.76 1.52
30 31 6.148811 TCAAACTCCTTGCTAACCGATAAAAG 59.851 38.462 0.00 0.00 34.76 2.27
31 32 4.514401 ACTCCTTGCTAACCGATAAAAGG 58.486 43.478 0.00 0.00 36.36 3.11
32 33 4.224370 ACTCCTTGCTAACCGATAAAAGGA 59.776 41.667 0.00 0.00 40.58 3.36
33 34 5.168647 TCCTTGCTAACCGATAAAAGGAA 57.831 39.130 0.00 0.00 40.06 3.36
34 35 5.751586 TCCTTGCTAACCGATAAAAGGAAT 58.248 37.500 0.00 0.00 40.06 3.01
35 36 5.820947 TCCTTGCTAACCGATAAAAGGAATC 59.179 40.000 0.00 0.00 40.06 2.52
36 37 5.588648 CCTTGCTAACCGATAAAAGGAATCA 59.411 40.000 0.00 0.00 37.02 2.57
37 38 6.094881 CCTTGCTAACCGATAAAAGGAATCAA 59.905 38.462 0.00 0.00 37.02 2.57
38 39 6.677781 TGCTAACCGATAAAAGGAATCAAG 57.322 37.500 0.00 0.00 0.00 3.02
39 40 5.065988 TGCTAACCGATAAAAGGAATCAAGC 59.934 40.000 0.00 0.00 0.00 4.01
40 41 5.297029 GCTAACCGATAAAAGGAATCAAGCT 59.703 40.000 0.00 0.00 0.00 3.74
41 42 6.183360 GCTAACCGATAAAAGGAATCAAGCTT 60.183 38.462 0.00 0.00 0.00 3.74
42 43 5.819825 ACCGATAAAAGGAATCAAGCTTC 57.180 39.130 0.00 0.00 0.00 3.86
43 44 5.253330 ACCGATAAAAGGAATCAAGCTTCA 58.747 37.500 0.00 0.00 0.00 3.02
44 45 5.710099 ACCGATAAAAGGAATCAAGCTTCAA 59.290 36.000 0.00 0.00 0.00 2.69
45 46 6.127897 ACCGATAAAAGGAATCAAGCTTCAAG 60.128 38.462 0.00 0.00 0.00 3.02
46 47 6.261118 CGATAAAAGGAATCAAGCTTCAAGG 58.739 40.000 0.00 0.00 0.00 3.61
47 48 6.094048 CGATAAAAGGAATCAAGCTTCAAGGA 59.906 38.462 0.00 0.00 0.00 3.36
48 49 5.459536 AAAAGGAATCAAGCTTCAAGGAC 57.540 39.130 0.00 0.00 0.00 3.85
49 50 4.379302 AAGGAATCAAGCTTCAAGGACT 57.621 40.909 0.00 0.00 0.00 3.85
50 51 5.505181 AAGGAATCAAGCTTCAAGGACTA 57.495 39.130 0.00 0.00 0.00 2.59
51 52 5.707066 AGGAATCAAGCTTCAAGGACTAT 57.293 39.130 0.00 0.00 0.00 2.12
52 53 6.814954 AGGAATCAAGCTTCAAGGACTATA 57.185 37.500 0.00 0.00 0.00 1.31
53 54 7.385894 AGGAATCAAGCTTCAAGGACTATAT 57.614 36.000 0.00 0.00 0.00 0.86
54 55 7.222872 AGGAATCAAGCTTCAAGGACTATATG 58.777 38.462 0.00 0.00 0.00 1.78
55 56 7.071698 AGGAATCAAGCTTCAAGGACTATATGA 59.928 37.037 0.00 0.00 0.00 2.15
56 57 7.172361 GGAATCAAGCTTCAAGGACTATATGAC 59.828 40.741 0.00 0.00 0.00 3.06
57 58 6.798427 TCAAGCTTCAAGGACTATATGACT 57.202 37.500 0.00 0.00 0.00 3.41
58 59 7.898014 TCAAGCTTCAAGGACTATATGACTA 57.102 36.000 0.00 0.00 0.00 2.59
59 60 7.946207 TCAAGCTTCAAGGACTATATGACTAG 58.054 38.462 0.00 0.00 0.00 2.57
60 61 6.339587 AGCTTCAAGGACTATATGACTAGC 57.660 41.667 0.00 0.00 30.63 3.42
61 62 6.074648 AGCTTCAAGGACTATATGACTAGCT 58.925 40.000 0.00 0.00 34.23 3.32
62 63 6.208599 AGCTTCAAGGACTATATGACTAGCTC 59.791 42.308 0.00 0.00 34.01 4.09
63 64 6.208599 GCTTCAAGGACTATATGACTAGCTCT 59.791 42.308 0.00 0.00 28.88 4.09
64 65 7.255801 GCTTCAAGGACTATATGACTAGCTCTT 60.256 40.741 0.00 0.00 28.88 2.85
65 66 7.753309 TCAAGGACTATATGACTAGCTCTTC 57.247 40.000 0.00 0.00 0.00 2.87
66 67 6.717540 TCAAGGACTATATGACTAGCTCTTCC 59.282 42.308 0.00 0.00 0.00 3.46
67 68 6.207509 AGGACTATATGACTAGCTCTTCCA 57.792 41.667 0.00 0.00 0.00 3.53
68 69 6.007703 AGGACTATATGACTAGCTCTTCCAC 58.992 44.000 0.00 0.00 0.00 4.02
69 70 5.770663 GGACTATATGACTAGCTCTTCCACA 59.229 44.000 0.00 0.00 0.00 4.17
70 71 6.435904 GGACTATATGACTAGCTCTTCCACAT 59.564 42.308 0.00 0.00 0.00 3.21
71 72 7.362574 GGACTATATGACTAGCTCTTCCACATC 60.363 44.444 0.00 0.00 0.00 3.06
72 73 5.736951 ATATGACTAGCTCTTCCACATCC 57.263 43.478 0.00 0.00 0.00 3.51
73 74 3.107402 TGACTAGCTCTTCCACATCCT 57.893 47.619 0.00 0.00 0.00 3.24
74 75 3.027412 TGACTAGCTCTTCCACATCCTC 58.973 50.000 0.00 0.00 0.00 3.71
75 76 2.028130 ACTAGCTCTTCCACATCCTCG 58.972 52.381 0.00 0.00 0.00 4.63
76 77 0.747255 TAGCTCTTCCACATCCTCGC 59.253 55.000 0.00 0.00 0.00 5.03
77 78 1.522580 GCTCTTCCACATCCTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
78 79 1.900351 CTCTTCCACATCCTCGCCA 59.100 57.895 0.00 0.00 0.00 5.69
79 80 0.460987 CTCTTCCACATCCTCGCCAC 60.461 60.000 0.00 0.00 0.00 5.01
80 81 1.450312 CTTCCACATCCTCGCCACC 60.450 63.158 0.00 0.00 0.00 4.61
81 82 2.184020 CTTCCACATCCTCGCCACCA 62.184 60.000 0.00 0.00 0.00 4.17
82 83 1.561769 TTCCACATCCTCGCCACCAT 61.562 55.000 0.00 0.00 0.00 3.55
83 84 1.077501 CCACATCCTCGCCACCATT 60.078 57.895 0.00 0.00 0.00 3.16
84 85 1.097547 CCACATCCTCGCCACCATTC 61.098 60.000 0.00 0.00 0.00 2.67
85 86 0.392863 CACATCCTCGCCACCATTCA 60.393 55.000 0.00 0.00 0.00 2.57
86 87 0.548031 ACATCCTCGCCACCATTCAT 59.452 50.000 0.00 0.00 0.00 2.57
87 88 1.768275 ACATCCTCGCCACCATTCATA 59.232 47.619 0.00 0.00 0.00 2.15
88 89 2.172505 ACATCCTCGCCACCATTCATAA 59.827 45.455 0.00 0.00 0.00 1.90
89 90 2.620251 TCCTCGCCACCATTCATAAG 57.380 50.000 0.00 0.00 0.00 1.73
90 91 1.140852 TCCTCGCCACCATTCATAAGG 59.859 52.381 0.00 0.00 0.00 2.69
91 92 0.947244 CTCGCCACCATTCATAAGGC 59.053 55.000 0.00 0.00 41.86 4.35
92 93 0.546122 TCGCCACCATTCATAAGGCT 59.454 50.000 0.00 0.00 43.07 4.58
93 94 1.064758 TCGCCACCATTCATAAGGCTT 60.065 47.619 4.58 4.58 43.07 4.35
94 95 1.750778 CGCCACCATTCATAAGGCTTT 59.249 47.619 4.45 0.00 43.07 3.51
95 96 2.223572 CGCCACCATTCATAAGGCTTTC 60.224 50.000 4.45 0.00 43.07 2.62
96 97 2.760092 GCCACCATTCATAAGGCTTTCA 59.240 45.455 4.45 0.00 42.01 2.69
97 98 3.195396 GCCACCATTCATAAGGCTTTCAA 59.805 43.478 4.45 0.00 42.01 2.69
98 99 4.678840 GCCACCATTCATAAGGCTTTCAAG 60.679 45.833 4.45 0.00 42.01 3.02
99 100 4.142093 CCACCATTCATAAGGCTTTCAAGG 60.142 45.833 4.45 3.40 0.00 3.61
100 101 4.706476 CACCATTCATAAGGCTTTCAAGGA 59.294 41.667 4.45 0.00 0.00 3.36
101 102 5.185635 CACCATTCATAAGGCTTTCAAGGAA 59.814 40.000 4.45 1.05 0.00 3.36
102 103 5.960202 ACCATTCATAAGGCTTTCAAGGAAT 59.040 36.000 4.45 3.72 0.00 3.01
103 104 7.068593 CACCATTCATAAGGCTTTCAAGGAATA 59.931 37.037 4.45 0.00 0.00 1.75
104 105 7.786464 ACCATTCATAAGGCTTTCAAGGAATAT 59.214 33.333 4.45 0.00 0.00 1.28
105 106 8.645110 CCATTCATAAGGCTTTCAAGGAATATT 58.355 33.333 4.45 0.00 0.00 1.28
106 107 9.472361 CATTCATAAGGCTTTCAAGGAATATTG 57.528 33.333 4.45 0.00 0.00 1.90
107 108 8.821686 TTCATAAGGCTTTCAAGGAATATTGA 57.178 30.769 4.45 0.00 37.41 2.57
108 109 8.455903 TCATAAGGCTTTCAAGGAATATTGAG 57.544 34.615 4.45 0.00 40.16 3.02
109 110 8.274322 TCATAAGGCTTTCAAGGAATATTGAGA 58.726 33.333 4.45 0.00 40.16 3.27
110 111 9.075678 CATAAGGCTTTCAAGGAATATTGAGAT 57.924 33.333 4.45 0.00 40.16 2.75
113 114 8.860780 AGGCTTTCAAGGAATATTGAGATATC 57.139 34.615 0.00 0.00 40.16 1.63
114 115 8.667737 AGGCTTTCAAGGAATATTGAGATATCT 58.332 33.333 4.47 4.47 40.16 1.98
115 116 9.950496 GGCTTTCAAGGAATATTGAGATATCTA 57.050 33.333 4.89 0.00 40.16 1.98
146 147 5.041191 AGAAACAGACATTCTCAGTTGGT 57.959 39.130 0.00 0.00 31.61 3.67
147 148 5.059833 AGAAACAGACATTCTCAGTTGGTC 58.940 41.667 0.00 0.00 31.61 4.02
148 149 3.409026 ACAGACATTCTCAGTTGGTCC 57.591 47.619 0.00 0.00 0.00 4.46
149 150 2.705658 ACAGACATTCTCAGTTGGTCCA 59.294 45.455 0.00 0.00 0.00 4.02
150 151 3.070018 CAGACATTCTCAGTTGGTCCAC 58.930 50.000 0.00 0.00 0.00 4.02
151 152 2.975489 AGACATTCTCAGTTGGTCCACT 59.025 45.455 0.00 0.00 0.00 4.00
152 153 4.021104 CAGACATTCTCAGTTGGTCCACTA 60.021 45.833 0.00 0.00 0.00 2.74
153 154 4.780021 AGACATTCTCAGTTGGTCCACTAT 59.220 41.667 0.00 0.00 0.00 2.12
154 155 5.249393 AGACATTCTCAGTTGGTCCACTATT 59.751 40.000 0.00 0.00 0.00 1.73
155 156 6.440647 AGACATTCTCAGTTGGTCCACTATTA 59.559 38.462 0.00 0.00 0.00 0.98
156 157 6.644347 ACATTCTCAGTTGGTCCACTATTAG 58.356 40.000 0.00 0.00 0.00 1.73
157 158 4.737855 TCTCAGTTGGTCCACTATTAGC 57.262 45.455 0.00 0.00 0.00 3.09
158 159 3.130516 TCTCAGTTGGTCCACTATTAGCG 59.869 47.826 0.00 0.00 0.00 4.26
159 160 3.093814 TCAGTTGGTCCACTATTAGCGA 58.906 45.455 0.00 0.00 0.00 4.93
160 161 3.130516 TCAGTTGGTCCACTATTAGCGAG 59.869 47.826 0.00 0.00 0.00 5.03
161 162 2.431057 AGTTGGTCCACTATTAGCGAGG 59.569 50.000 0.00 0.00 0.00 4.63
162 163 0.750850 TGGTCCACTATTAGCGAGGC 59.249 55.000 0.00 0.00 0.00 4.70
163 164 0.033642 GGTCCACTATTAGCGAGGCC 59.966 60.000 0.00 0.00 0.00 5.19
164 165 1.041437 GTCCACTATTAGCGAGGCCT 58.959 55.000 3.86 3.86 0.00 5.19
165 166 2.236766 GTCCACTATTAGCGAGGCCTA 58.763 52.381 4.42 0.00 0.00 3.93
166 167 2.626743 GTCCACTATTAGCGAGGCCTAA 59.373 50.000 4.42 0.00 0.00 2.69
167 168 3.069158 GTCCACTATTAGCGAGGCCTAAA 59.931 47.826 4.42 0.00 31.62 1.85
168 169 3.321111 TCCACTATTAGCGAGGCCTAAAG 59.679 47.826 4.42 0.65 31.62 1.85
169 170 3.069729 CCACTATTAGCGAGGCCTAAAGT 59.930 47.826 4.42 0.31 31.62 2.66
170 171 4.299978 CACTATTAGCGAGGCCTAAAGTC 58.700 47.826 4.42 0.00 31.62 3.01
171 172 4.038162 CACTATTAGCGAGGCCTAAAGTCT 59.962 45.833 4.42 5.03 31.62 3.24
172 173 4.650131 ACTATTAGCGAGGCCTAAAGTCTT 59.350 41.667 4.42 0.00 31.62 3.01
173 174 3.521947 TTAGCGAGGCCTAAAGTCTTC 57.478 47.619 4.42 0.00 0.00 2.87
174 175 1.267121 AGCGAGGCCTAAAGTCTTCA 58.733 50.000 4.42 0.00 0.00 3.02
175 176 1.066787 AGCGAGGCCTAAAGTCTTCAC 60.067 52.381 4.42 0.00 0.00 3.18
176 177 1.066787 GCGAGGCCTAAAGTCTTCACT 60.067 52.381 4.42 0.00 0.00 3.41
177 178 2.613223 GCGAGGCCTAAAGTCTTCACTT 60.613 50.000 4.42 0.00 45.43 3.16
178 179 3.254892 CGAGGCCTAAAGTCTTCACTTC 58.745 50.000 4.42 0.00 42.45 3.01
179 180 3.306088 CGAGGCCTAAAGTCTTCACTTCA 60.306 47.826 4.42 0.00 42.45 3.02
180 181 4.621747 CGAGGCCTAAAGTCTTCACTTCAT 60.622 45.833 4.42 0.00 42.45 2.57
181 182 4.837972 AGGCCTAAAGTCTTCACTTCATC 58.162 43.478 1.29 0.00 42.45 2.92
182 183 4.287067 AGGCCTAAAGTCTTCACTTCATCA 59.713 41.667 1.29 0.00 42.45 3.07
183 184 4.633565 GGCCTAAAGTCTTCACTTCATCAG 59.366 45.833 0.00 0.00 42.45 2.90
184 185 5.241662 GCCTAAAGTCTTCACTTCATCAGT 58.758 41.667 0.00 0.00 42.45 3.41
319 320 5.767816 AAATAACACATAAATCGAGGGCC 57.232 39.130 0.00 0.00 0.00 5.80
334 335 2.976903 GCCATGCGGATCCTCAGC 60.977 66.667 10.73 6.87 38.08 4.26
844 845 0.392998 CCCACGCATCTAACCAGCTT 60.393 55.000 0.00 0.00 0.00 3.74
999 1000 2.125106 CGCCCTCTTGCTACCCAC 60.125 66.667 0.00 0.00 0.00 4.61
1493 1494 1.963515 ACCGAGCAAAGGCAAAAAGAT 59.036 42.857 0.00 0.00 44.61 2.40
1763 1766 3.056035 GTGGGTCGTCCTCTTATTCACTT 60.056 47.826 0.00 0.00 36.20 3.16
1979 1982 6.092259 GCCTGTACGAAATAACTTGTGAAGAT 59.908 38.462 0.00 0.00 0.00 2.40
1982 1985 8.239681 TGTACGAAATAACTTGTGAAGATGAG 57.760 34.615 0.00 0.00 0.00 2.90
1983 1986 6.170675 ACGAAATAACTTGTGAAGATGAGC 57.829 37.500 0.00 0.00 0.00 4.26
1984 1987 5.163953 ACGAAATAACTTGTGAAGATGAGCG 60.164 40.000 0.00 0.00 0.00 5.03
1985 1988 5.062183 CGAAATAACTTGTGAAGATGAGCGA 59.938 40.000 0.00 0.00 0.00 4.93
1986 1989 6.414408 AAATAACTTGTGAAGATGAGCGAG 57.586 37.500 0.00 0.00 0.00 5.03
1987 1990 3.667497 AACTTGTGAAGATGAGCGAGA 57.333 42.857 0.00 0.00 0.00 4.04
1988 1991 3.883830 ACTTGTGAAGATGAGCGAGAT 57.116 42.857 0.00 0.00 0.00 2.75
1989 1992 4.199432 ACTTGTGAAGATGAGCGAGATT 57.801 40.909 0.00 0.00 0.00 2.40
1990 1993 3.931468 ACTTGTGAAGATGAGCGAGATTG 59.069 43.478 0.00 0.00 0.00 2.67
1991 1994 3.874392 TGTGAAGATGAGCGAGATTGA 57.126 42.857 0.00 0.00 0.00 2.57
1992 1995 4.397481 TGTGAAGATGAGCGAGATTGAT 57.603 40.909 0.00 0.00 0.00 2.57
1993 1996 4.763073 TGTGAAGATGAGCGAGATTGATT 58.237 39.130 0.00 0.00 0.00 2.57
1994 1997 4.569564 TGTGAAGATGAGCGAGATTGATTG 59.430 41.667 0.00 0.00 0.00 2.67
1995 1998 4.807834 GTGAAGATGAGCGAGATTGATTGA 59.192 41.667 0.00 0.00 0.00 2.57
1996 1999 5.292834 GTGAAGATGAGCGAGATTGATTGAA 59.707 40.000 0.00 0.00 0.00 2.69
1997 2000 5.876460 TGAAGATGAGCGAGATTGATTGAAA 59.124 36.000 0.00 0.00 0.00 2.69
1998 2001 5.987777 AGATGAGCGAGATTGATTGAAAG 57.012 39.130 0.00 0.00 0.00 2.62
1999 2002 4.272991 AGATGAGCGAGATTGATTGAAAGC 59.727 41.667 0.00 0.00 0.00 3.51
2000 2003 2.349580 TGAGCGAGATTGATTGAAAGCG 59.650 45.455 0.00 0.00 0.00 4.68
2001 2004 1.063174 AGCGAGATTGATTGAAAGCGC 59.937 47.619 0.00 0.00 43.09 5.92
2002 2005 1.063174 GCGAGATTGATTGAAAGCGCT 59.937 47.619 2.64 2.64 40.03 5.92
2003 2006 2.701807 CGAGATTGATTGAAAGCGCTG 58.298 47.619 12.58 0.00 0.00 5.18
2004 2007 2.094894 CGAGATTGATTGAAAGCGCTGT 59.905 45.455 12.58 4.49 0.00 4.40
2005 2008 3.423571 GAGATTGATTGAAAGCGCTGTG 58.576 45.455 12.58 0.00 0.00 3.66
2006 2009 1.916000 GATTGATTGAAAGCGCTGTGC 59.084 47.619 12.58 4.76 46.98 4.57
2016 2019 3.952675 CGCTGTGCCAACTTGCGT 61.953 61.111 0.00 0.00 41.49 5.24
2017 2020 2.603247 CGCTGTGCCAACTTGCGTA 61.603 57.895 0.00 0.00 41.49 4.42
2018 2021 1.082104 GCTGTGCCAACTTGCGTAC 60.082 57.895 0.00 0.00 0.00 3.67
2019 2022 1.781025 GCTGTGCCAACTTGCGTACA 61.781 55.000 0.00 2.77 0.00 2.90
2020 2023 0.660488 CTGTGCCAACTTGCGTACAA 59.340 50.000 0.00 0.00 0.00 2.41
2033 2036 4.914312 TGCGTACAAGATTTTTAGACGG 57.086 40.909 0.00 0.00 0.00 4.79
2034 2037 4.309099 TGCGTACAAGATTTTTAGACGGT 58.691 39.130 0.00 0.00 0.00 4.83
2035 2038 4.751098 TGCGTACAAGATTTTTAGACGGTT 59.249 37.500 0.00 0.00 0.00 4.44
2036 2039 5.107375 TGCGTACAAGATTTTTAGACGGTTC 60.107 40.000 0.00 0.00 0.00 3.62
2037 2040 5.107375 GCGTACAAGATTTTTAGACGGTTCA 60.107 40.000 0.00 0.00 0.00 3.18
2038 2041 6.564499 GCGTACAAGATTTTTAGACGGTTCAA 60.564 38.462 0.00 0.00 0.00 2.69
2039 2042 7.007697 CGTACAAGATTTTTAGACGGTTCAAG 58.992 38.462 0.00 0.00 0.00 3.02
2040 2043 7.095940 CGTACAAGATTTTTAGACGGTTCAAGA 60.096 37.037 0.00 0.00 0.00 3.02
2041 2044 7.562454 ACAAGATTTTTAGACGGTTCAAGAA 57.438 32.000 0.00 0.00 0.00 2.52
2042 2045 8.166422 ACAAGATTTTTAGACGGTTCAAGAAT 57.834 30.769 0.00 0.00 0.00 2.40
2043 2046 8.630037 ACAAGATTTTTAGACGGTTCAAGAATT 58.370 29.630 0.00 0.00 0.00 2.17
2044 2047 9.118236 CAAGATTTTTAGACGGTTCAAGAATTC 57.882 33.333 0.00 0.00 0.00 2.17
2045 2048 7.519002 AGATTTTTAGACGGTTCAAGAATTCG 58.481 34.615 0.00 6.87 0.00 3.34
2046 2049 6.847956 TTTTTAGACGGTTCAAGAATTCGA 57.152 33.333 12.81 0.00 0.00 3.71
2047 2050 6.847956 TTTTAGACGGTTCAAGAATTCGAA 57.152 33.333 0.00 0.00 0.00 3.71
2048 2051 6.847956 TTTAGACGGTTCAAGAATTCGAAA 57.152 33.333 0.00 0.00 0.00 3.46
2049 2052 6.847956 TTAGACGGTTCAAGAATTCGAAAA 57.152 33.333 0.00 0.00 0.00 2.29
2050 2053 5.744666 AGACGGTTCAAGAATTCGAAAAA 57.255 34.783 0.00 0.00 0.00 1.94
2051 2054 5.748592 AGACGGTTCAAGAATTCGAAAAAG 58.251 37.500 0.00 0.00 0.00 2.27
2052 2055 5.296035 AGACGGTTCAAGAATTCGAAAAAGT 59.704 36.000 0.00 0.00 0.00 2.66
2053 2056 5.886992 ACGGTTCAAGAATTCGAAAAAGTT 58.113 33.333 0.00 0.00 0.00 2.66
2054 2057 6.327154 ACGGTTCAAGAATTCGAAAAAGTTT 58.673 32.000 0.00 0.00 0.00 2.66
2055 2058 6.809689 ACGGTTCAAGAATTCGAAAAAGTTTT 59.190 30.769 0.00 0.00 0.00 2.43
2056 2059 7.969508 ACGGTTCAAGAATTCGAAAAAGTTTTA 59.030 29.630 0.00 0.00 0.00 1.52
2057 2060 8.964150 CGGTTCAAGAATTCGAAAAAGTTTTAT 58.036 29.630 0.00 0.00 0.00 1.40
2150 2153 9.391006 AGGAAAAAGAATAAAACAAAGGAAACC 57.609 29.630 0.00 0.00 0.00 3.27
2151 2154 8.617809 GGAAAAAGAATAAAACAAAGGAAACCC 58.382 33.333 0.00 0.00 0.00 4.11
2152 2155 9.391006 GAAAAAGAATAAAACAAAGGAAACCCT 57.609 29.630 0.00 0.00 34.97 4.34
2155 2158 8.777578 AAGAATAAAACAAAGGAAACCCTAGT 57.222 30.769 0.00 0.00 32.65 2.57
2156 2159 8.777578 AGAATAAAACAAAGGAAACCCTAGTT 57.222 30.769 0.00 0.00 38.03 2.24
2157 2160 8.857098 AGAATAAAACAAAGGAAACCCTAGTTC 58.143 33.333 0.00 0.00 34.19 3.01
2158 2161 8.541899 AATAAAACAAAGGAAACCCTAGTTCA 57.458 30.769 0.00 0.00 34.19 3.18
2159 2162 6.465439 AAAACAAAGGAAACCCTAGTTCAG 57.535 37.500 0.00 0.00 34.19 3.02
2160 2163 5.382664 AACAAAGGAAACCCTAGTTCAGA 57.617 39.130 0.00 0.00 34.19 3.27
2161 2164 5.382664 ACAAAGGAAACCCTAGTTCAGAA 57.617 39.130 0.00 0.00 34.19 3.02
2162 2165 5.762279 ACAAAGGAAACCCTAGTTCAGAAA 58.238 37.500 0.00 0.00 34.19 2.52
2163 2166 6.192044 ACAAAGGAAACCCTAGTTCAGAAAA 58.808 36.000 0.00 0.00 34.19 2.29
2164 2167 6.666113 ACAAAGGAAACCCTAGTTCAGAAAAA 59.334 34.615 0.00 0.00 34.19 1.94
2213 2216 0.318441 GGAAGCTTCCCAAAACCAGC 59.682 55.000 31.91 5.30 41.62 4.85
2214 2217 1.039856 GAAGCTTCCCAAAACCAGCA 58.960 50.000 15.97 0.00 34.49 4.41
2215 2218 1.620323 GAAGCTTCCCAAAACCAGCAT 59.380 47.619 15.97 0.00 34.49 3.79
2216 2219 1.260544 AGCTTCCCAAAACCAGCATC 58.739 50.000 0.00 0.00 34.49 3.91
2217 2220 1.203100 AGCTTCCCAAAACCAGCATCT 60.203 47.619 0.00 0.00 34.49 2.90
2218 2221 2.041620 AGCTTCCCAAAACCAGCATCTA 59.958 45.455 0.00 0.00 34.49 1.98
2219 2222 2.825532 GCTTCCCAAAACCAGCATCTAA 59.174 45.455 0.00 0.00 32.17 2.10
2220 2223 3.448660 GCTTCCCAAAACCAGCATCTAAT 59.551 43.478 0.00 0.00 32.17 1.73
2221 2224 4.440663 GCTTCCCAAAACCAGCATCTAATC 60.441 45.833 0.00 0.00 32.17 1.75
2222 2225 4.591321 TCCCAAAACCAGCATCTAATCT 57.409 40.909 0.00 0.00 0.00 2.40
2223 2226 4.934356 TCCCAAAACCAGCATCTAATCTT 58.066 39.130 0.00 0.00 0.00 2.40
2224 2227 5.332743 TCCCAAAACCAGCATCTAATCTTT 58.667 37.500 0.00 0.00 0.00 2.52
2225 2228 5.779771 TCCCAAAACCAGCATCTAATCTTTT 59.220 36.000 0.00 0.00 0.00 2.27
2226 2229 6.951198 TCCCAAAACCAGCATCTAATCTTTTA 59.049 34.615 0.00 0.00 0.00 1.52
2227 2230 7.122650 TCCCAAAACCAGCATCTAATCTTTTAG 59.877 37.037 0.00 0.00 36.87 1.85
2228 2231 7.122650 CCCAAAACCAGCATCTAATCTTTTAGA 59.877 37.037 0.00 0.00 45.95 2.10
2229 2232 8.186821 CCAAAACCAGCATCTAATCTTTTAGAG 58.813 37.037 2.34 0.00 45.29 2.43
2230 2233 6.934048 AACCAGCATCTAATCTTTTAGAGC 57.066 37.500 2.34 5.71 45.29 4.09
2231 2234 6.245890 ACCAGCATCTAATCTTTTAGAGCT 57.754 37.500 0.00 0.00 45.29 4.09
2232 2235 6.657875 ACCAGCATCTAATCTTTTAGAGCTT 58.342 36.000 12.71 3.43 45.29 3.74
2233 2236 6.765512 ACCAGCATCTAATCTTTTAGAGCTTC 59.234 38.462 12.71 0.00 45.29 3.86
2234 2237 6.204495 CCAGCATCTAATCTTTTAGAGCTTCC 59.796 42.308 12.71 0.00 45.29 3.46
2235 2238 6.765036 CAGCATCTAATCTTTTAGAGCTTCCA 59.235 38.462 12.71 0.00 45.29 3.53
2236 2239 7.281774 CAGCATCTAATCTTTTAGAGCTTCCAA 59.718 37.037 12.71 0.00 45.29 3.53
2237 2240 7.831193 AGCATCTAATCTTTTAGAGCTTCCAAA 59.169 33.333 10.92 0.00 45.29 3.28
2238 2241 8.462016 GCATCTAATCTTTTAGAGCTTCCAAAA 58.538 33.333 0.00 0.00 45.29 2.44
2241 2244 8.793592 TCTAATCTTTTAGAGCTTCCAAAAACC 58.206 33.333 0.00 0.00 39.09 3.27
2242 2245 5.432885 TCTTTTAGAGCTTCCAAAAACCG 57.567 39.130 0.00 0.00 0.00 4.44
2243 2246 4.277423 TCTTTTAGAGCTTCCAAAAACCGG 59.723 41.667 0.00 0.00 0.00 5.28
2244 2247 3.495434 TTAGAGCTTCCAAAAACCGGA 57.505 42.857 9.46 0.00 0.00 5.14
2245 2248 1.897560 AGAGCTTCCAAAAACCGGAG 58.102 50.000 9.46 0.00 33.01 4.63
2246 2249 0.241213 GAGCTTCCAAAAACCGGAGC 59.759 55.000 9.46 3.37 33.01 4.70
2247 2250 0.467290 AGCTTCCAAAAACCGGAGCA 60.467 50.000 9.46 0.00 33.01 4.26
2248 2251 0.039165 GCTTCCAAAAACCGGAGCAG 60.039 55.000 9.46 0.00 33.01 4.24
2249 2252 1.604604 CTTCCAAAAACCGGAGCAGA 58.395 50.000 9.46 0.00 33.01 4.26
2250 2253 1.953686 CTTCCAAAAACCGGAGCAGAA 59.046 47.619 9.46 2.24 33.01 3.02
2251 2254 2.060050 TCCAAAAACCGGAGCAGAAA 57.940 45.000 9.46 0.00 0.00 2.52
2252 2255 2.593026 TCCAAAAACCGGAGCAGAAAT 58.407 42.857 9.46 0.00 0.00 2.17
2253 2256 2.962421 TCCAAAAACCGGAGCAGAAATT 59.038 40.909 9.46 0.00 0.00 1.82
2254 2257 3.386402 TCCAAAAACCGGAGCAGAAATTT 59.614 39.130 9.46 0.00 0.00 1.82
2255 2258 3.740832 CCAAAAACCGGAGCAGAAATTTC 59.259 43.478 9.46 10.33 0.00 2.17
2256 2259 3.660501 AAAACCGGAGCAGAAATTTCC 57.339 42.857 9.46 0.00 0.00 3.13
2257 2260 2.586648 AACCGGAGCAGAAATTTCCT 57.413 45.000 9.46 5.65 0.00 3.36
2258 2261 2.586648 ACCGGAGCAGAAATTTCCTT 57.413 45.000 9.46 0.62 0.00 3.36
2259 2262 2.876581 ACCGGAGCAGAAATTTCCTTT 58.123 42.857 9.46 0.25 0.00 3.11
2260 2263 2.558359 ACCGGAGCAGAAATTTCCTTTG 59.442 45.455 9.46 7.93 0.00 2.77
2261 2264 2.094545 CCGGAGCAGAAATTTCCTTTGG 60.095 50.000 14.61 7.74 0.00 3.28
2262 2265 2.558359 CGGAGCAGAAATTTCCTTTGGT 59.442 45.455 14.61 11.80 0.00 3.67
2263 2266 3.612479 CGGAGCAGAAATTTCCTTTGGTG 60.612 47.826 14.61 6.54 0.00 4.17
2264 2267 3.320626 GAGCAGAAATTTCCTTTGGTGC 58.679 45.455 14.61 15.46 35.20 5.01
2265 2268 2.061028 GCAGAAATTTCCTTTGGTGCG 58.939 47.619 14.61 0.00 0.00 5.34
2266 2269 2.061028 CAGAAATTTCCTTTGGTGCGC 58.939 47.619 14.61 0.00 0.00 6.09
2267 2270 1.963515 AGAAATTTCCTTTGGTGCGCT 59.036 42.857 14.61 0.00 0.00 5.92
2268 2271 2.029918 AGAAATTTCCTTTGGTGCGCTC 60.030 45.455 14.61 4.47 0.00 5.03
2269 2272 1.620822 AATTTCCTTTGGTGCGCTCT 58.379 45.000 9.73 0.00 0.00 4.09
2270 2273 1.620822 ATTTCCTTTGGTGCGCTCTT 58.379 45.000 9.73 0.00 0.00 2.85
2271 2274 2.264005 TTTCCTTTGGTGCGCTCTTA 57.736 45.000 9.73 0.00 0.00 2.10
2272 2275 2.264005 TTCCTTTGGTGCGCTCTTAA 57.736 45.000 9.73 2.18 0.00 1.85
2273 2276 1.519408 TCCTTTGGTGCGCTCTTAAC 58.481 50.000 9.73 0.00 0.00 2.01
2274 2277 1.071699 TCCTTTGGTGCGCTCTTAACT 59.928 47.619 9.73 0.00 0.00 2.24
2275 2278 1.197721 CCTTTGGTGCGCTCTTAACTG 59.802 52.381 9.73 1.54 0.00 3.16
2276 2279 1.197721 CTTTGGTGCGCTCTTAACTGG 59.802 52.381 9.73 0.00 0.00 4.00
2277 2280 0.605319 TTGGTGCGCTCTTAACTGGG 60.605 55.000 9.73 0.00 0.00 4.45
2278 2281 2.399356 GGTGCGCTCTTAACTGGGC 61.399 63.158 9.73 0.00 41.57 5.36
2279 2282 2.046314 TGCGCTCTTAACTGGGCC 60.046 61.111 9.73 0.00 40.69 5.80
2280 2283 2.046314 GCGCTCTTAACTGGGCCA 60.046 61.111 5.85 5.85 36.35 5.36
2281 2284 2.109126 GCGCTCTTAACTGGGCCAG 61.109 63.158 31.62 31.62 36.35 4.85
2282 2285 2.109126 CGCTCTTAACTGGGCCAGC 61.109 63.158 33.04 17.19 34.37 4.85
2283 2286 1.750780 GCTCTTAACTGGGCCAGCC 60.751 63.158 33.04 9.12 34.37 4.85
2294 2297 3.281332 GGCCAGCCCATAGAAAACA 57.719 52.632 0.00 0.00 0.00 2.83
2295 2298 1.106285 GGCCAGCCCATAGAAAACAG 58.894 55.000 0.00 0.00 0.00 3.16
2296 2299 0.457443 GCCAGCCCATAGAAAACAGC 59.543 55.000 0.00 0.00 0.00 4.40
2297 2300 1.838112 CCAGCCCATAGAAAACAGCA 58.162 50.000 0.00 0.00 0.00 4.41
2298 2301 2.381911 CCAGCCCATAGAAAACAGCAT 58.618 47.619 0.00 0.00 0.00 3.79
2299 2302 2.100252 CCAGCCCATAGAAAACAGCATG 59.900 50.000 0.00 0.00 46.00 4.06
2312 2315 4.586235 GCATGTAGGCCCCCGCAT 62.586 66.667 0.00 0.00 36.38 4.73
2313 2316 3.156714 CATGTAGGCCCCCGCATA 58.843 61.111 0.00 0.00 36.38 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.570125 GGTTAGCAAGGAGTTTGAAGCTT 59.430 43.478 0.00 0.00 39.21 3.74
1 2 3.149981 GGTTAGCAAGGAGTTTGAAGCT 58.850 45.455 0.00 0.00 39.21 3.74
2 3 2.095718 CGGTTAGCAAGGAGTTTGAAGC 60.096 50.000 0.00 0.00 39.21 3.86
3 4 3.399330 TCGGTTAGCAAGGAGTTTGAAG 58.601 45.455 0.00 0.00 39.21 3.02
4 5 3.478857 TCGGTTAGCAAGGAGTTTGAA 57.521 42.857 0.00 0.00 39.21 2.69
5 6 3.695830 ATCGGTTAGCAAGGAGTTTGA 57.304 42.857 0.00 0.00 39.21 2.69
6 7 5.873179 TTTATCGGTTAGCAAGGAGTTTG 57.127 39.130 0.00 0.00 39.88 2.93
7 8 5.414765 CCTTTTATCGGTTAGCAAGGAGTTT 59.585 40.000 0.00 0.00 33.86 2.66
8 9 4.941873 CCTTTTATCGGTTAGCAAGGAGTT 59.058 41.667 0.00 0.00 33.86 3.01
9 10 4.224370 TCCTTTTATCGGTTAGCAAGGAGT 59.776 41.667 0.00 0.00 35.85 3.85
10 11 4.766375 TCCTTTTATCGGTTAGCAAGGAG 58.234 43.478 0.00 0.00 35.85 3.69
11 12 4.829872 TCCTTTTATCGGTTAGCAAGGA 57.170 40.909 0.00 0.00 37.95 3.36
12 13 5.588648 TGATTCCTTTTATCGGTTAGCAAGG 59.411 40.000 0.00 0.00 33.38 3.61
13 14 6.677781 TGATTCCTTTTATCGGTTAGCAAG 57.322 37.500 0.00 0.00 0.00 4.01
14 15 6.404293 GCTTGATTCCTTTTATCGGTTAGCAA 60.404 38.462 0.00 0.00 0.00 3.91
15 16 5.065988 GCTTGATTCCTTTTATCGGTTAGCA 59.934 40.000 0.00 0.00 0.00 3.49
16 17 5.297029 AGCTTGATTCCTTTTATCGGTTAGC 59.703 40.000 0.00 0.00 0.00 3.09
17 18 6.927294 AGCTTGATTCCTTTTATCGGTTAG 57.073 37.500 0.00 0.00 0.00 2.34
18 19 6.882140 TGAAGCTTGATTCCTTTTATCGGTTA 59.118 34.615 2.10 0.00 0.00 2.85
19 20 5.710099 TGAAGCTTGATTCCTTTTATCGGTT 59.290 36.000 2.10 0.00 0.00 4.44
20 21 5.253330 TGAAGCTTGATTCCTTTTATCGGT 58.747 37.500 2.10 0.00 0.00 4.69
21 22 5.818136 TGAAGCTTGATTCCTTTTATCGG 57.182 39.130 2.10 0.00 0.00 4.18
22 23 6.094048 TCCTTGAAGCTTGATTCCTTTTATCG 59.906 38.462 2.10 0.00 0.00 2.92
23 24 7.121907 AGTCCTTGAAGCTTGATTCCTTTTATC 59.878 37.037 2.10 0.00 0.00 1.75
24 25 6.950619 AGTCCTTGAAGCTTGATTCCTTTTAT 59.049 34.615 2.10 0.00 0.00 1.40
25 26 6.306987 AGTCCTTGAAGCTTGATTCCTTTTA 58.693 36.000 2.10 0.00 0.00 1.52
26 27 5.143369 AGTCCTTGAAGCTTGATTCCTTTT 58.857 37.500 2.10 0.00 0.00 2.27
27 28 4.734266 AGTCCTTGAAGCTTGATTCCTTT 58.266 39.130 2.10 0.00 0.00 3.11
28 29 4.379302 AGTCCTTGAAGCTTGATTCCTT 57.621 40.909 2.10 0.00 0.00 3.36
29 30 5.707066 ATAGTCCTTGAAGCTTGATTCCT 57.293 39.130 2.10 0.00 0.00 3.36
30 31 7.172361 GTCATATAGTCCTTGAAGCTTGATTCC 59.828 40.741 2.10 0.00 0.00 3.01
31 32 7.930865 AGTCATATAGTCCTTGAAGCTTGATTC 59.069 37.037 2.10 0.00 0.00 2.52
32 33 7.800092 AGTCATATAGTCCTTGAAGCTTGATT 58.200 34.615 2.10 0.00 0.00 2.57
33 34 7.372260 AGTCATATAGTCCTTGAAGCTTGAT 57.628 36.000 2.10 0.00 0.00 2.57
34 35 6.798427 AGTCATATAGTCCTTGAAGCTTGA 57.202 37.500 2.10 0.00 0.00 3.02
35 36 6.644592 GCTAGTCATATAGTCCTTGAAGCTTG 59.355 42.308 2.10 0.00 0.00 4.01
36 37 6.553100 AGCTAGTCATATAGTCCTTGAAGCTT 59.447 38.462 0.00 0.00 32.41 3.74
37 38 6.074648 AGCTAGTCATATAGTCCTTGAAGCT 58.925 40.000 0.00 0.00 31.81 3.74
38 39 6.208599 AGAGCTAGTCATATAGTCCTTGAAGC 59.791 42.308 0.00 0.00 0.00 3.86
39 40 7.759489 AGAGCTAGTCATATAGTCCTTGAAG 57.241 40.000 0.00 0.00 0.00 3.02
40 41 7.231722 GGAAGAGCTAGTCATATAGTCCTTGAA 59.768 40.741 0.00 0.00 0.00 2.69
41 42 6.717540 GGAAGAGCTAGTCATATAGTCCTTGA 59.282 42.308 0.00 0.00 0.00 3.02
42 43 6.491745 TGGAAGAGCTAGTCATATAGTCCTTG 59.508 42.308 0.00 0.00 0.00 3.61
43 44 6.492087 GTGGAAGAGCTAGTCATATAGTCCTT 59.508 42.308 0.00 0.00 0.00 3.36
44 45 6.007703 GTGGAAGAGCTAGTCATATAGTCCT 58.992 44.000 0.00 0.00 0.00 3.85
45 46 5.770663 TGTGGAAGAGCTAGTCATATAGTCC 59.229 44.000 0.00 0.00 0.00 3.85
46 47 6.885952 TGTGGAAGAGCTAGTCATATAGTC 57.114 41.667 0.00 0.00 0.00 2.59
47 48 6.435904 GGATGTGGAAGAGCTAGTCATATAGT 59.564 42.308 0.00 0.00 0.00 2.12
48 49 6.663093 AGGATGTGGAAGAGCTAGTCATATAG 59.337 42.308 0.00 0.00 0.00 1.31
49 50 6.556639 AGGATGTGGAAGAGCTAGTCATATA 58.443 40.000 0.00 0.00 0.00 0.86
50 51 5.401750 AGGATGTGGAAGAGCTAGTCATAT 58.598 41.667 0.00 0.00 0.00 1.78
51 52 4.809193 AGGATGTGGAAGAGCTAGTCATA 58.191 43.478 0.00 0.00 0.00 2.15
52 53 3.640967 GAGGATGTGGAAGAGCTAGTCAT 59.359 47.826 0.00 0.00 0.00 3.06
53 54 3.027412 GAGGATGTGGAAGAGCTAGTCA 58.973 50.000 0.00 0.00 0.00 3.41
54 55 2.034053 CGAGGATGTGGAAGAGCTAGTC 59.966 54.545 0.00 0.00 0.00 2.59
55 56 2.028130 CGAGGATGTGGAAGAGCTAGT 58.972 52.381 0.00 0.00 0.00 2.57
56 57 1.269517 GCGAGGATGTGGAAGAGCTAG 60.270 57.143 0.00 0.00 0.00 3.42
57 58 0.747255 GCGAGGATGTGGAAGAGCTA 59.253 55.000 0.00 0.00 0.00 3.32
58 59 1.519719 GCGAGGATGTGGAAGAGCT 59.480 57.895 0.00 0.00 0.00 4.09
59 60 1.522580 GGCGAGGATGTGGAAGAGC 60.523 63.158 0.00 0.00 0.00 4.09
60 61 0.460987 GTGGCGAGGATGTGGAAGAG 60.461 60.000 0.00 0.00 0.00 2.85
61 62 1.596934 GTGGCGAGGATGTGGAAGA 59.403 57.895 0.00 0.00 0.00 2.87
62 63 1.450312 GGTGGCGAGGATGTGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
63 64 1.561769 ATGGTGGCGAGGATGTGGAA 61.562 55.000 0.00 0.00 0.00 3.53
64 65 1.561769 AATGGTGGCGAGGATGTGGA 61.562 55.000 0.00 0.00 0.00 4.02
65 66 1.077501 AATGGTGGCGAGGATGTGG 60.078 57.895 0.00 0.00 0.00 4.17
66 67 0.392863 TGAATGGTGGCGAGGATGTG 60.393 55.000 0.00 0.00 0.00 3.21
67 68 0.548031 ATGAATGGTGGCGAGGATGT 59.452 50.000 0.00 0.00 0.00 3.06
68 69 2.549064 TATGAATGGTGGCGAGGATG 57.451 50.000 0.00 0.00 0.00 3.51
69 70 2.224621 CCTTATGAATGGTGGCGAGGAT 60.225 50.000 0.00 0.00 0.00 3.24
70 71 1.140852 CCTTATGAATGGTGGCGAGGA 59.859 52.381 0.00 0.00 0.00 3.71
71 72 1.597742 CCTTATGAATGGTGGCGAGG 58.402 55.000 0.00 0.00 0.00 4.63
72 73 0.947244 GCCTTATGAATGGTGGCGAG 59.053 55.000 0.00 0.00 33.96 5.03
73 74 3.094386 GCCTTATGAATGGTGGCGA 57.906 52.632 0.00 0.00 33.96 5.54
75 76 2.760092 TGAAAGCCTTATGAATGGTGGC 59.240 45.455 0.00 0.00 43.52 5.01
76 77 4.142093 CCTTGAAAGCCTTATGAATGGTGG 60.142 45.833 0.00 0.00 0.00 4.61
77 78 4.706476 TCCTTGAAAGCCTTATGAATGGTG 59.294 41.667 0.00 0.00 0.00 4.17
78 79 4.934356 TCCTTGAAAGCCTTATGAATGGT 58.066 39.130 0.00 0.00 0.00 3.55
79 80 5.920193 TTCCTTGAAAGCCTTATGAATGG 57.080 39.130 0.00 0.00 0.00 3.16
80 81 9.472361 CAATATTCCTTGAAAGCCTTATGAATG 57.528 33.333 0.00 0.00 0.00 2.67
81 82 9.425248 TCAATATTCCTTGAAAGCCTTATGAAT 57.575 29.630 0.00 0.00 32.35 2.57
82 83 8.821686 TCAATATTCCTTGAAAGCCTTATGAA 57.178 30.769 0.00 0.00 32.35 2.57
83 84 8.274322 TCTCAATATTCCTTGAAAGCCTTATGA 58.726 33.333 0.00 0.00 34.86 2.15
84 85 8.455903 TCTCAATATTCCTTGAAAGCCTTATG 57.544 34.615 0.00 0.00 34.86 1.90
87 88 9.294614 GATATCTCAATATTCCTTGAAAGCCTT 57.705 33.333 0.00 0.00 34.86 4.35
88 89 8.667737 AGATATCTCAATATTCCTTGAAAGCCT 58.332 33.333 0.00 0.00 34.86 4.58
89 90 8.860780 AGATATCTCAATATTCCTTGAAAGCC 57.139 34.615 0.00 0.00 34.86 4.35
118 119 7.872113 ACTGAGAATGTCTGTTTCTCTTTTT 57.128 32.000 12.97 0.00 46.03 1.94
119 120 7.201767 CCAACTGAGAATGTCTGTTTCTCTTTT 60.202 37.037 12.97 5.19 46.03 2.27
120 121 6.261826 CCAACTGAGAATGTCTGTTTCTCTTT 59.738 38.462 12.97 5.46 46.03 2.52
121 122 5.762218 CCAACTGAGAATGTCTGTTTCTCTT 59.238 40.000 12.97 0.29 46.03 2.85
122 123 5.163258 ACCAACTGAGAATGTCTGTTTCTCT 60.163 40.000 12.97 0.00 46.03 3.10
123 124 5.059833 ACCAACTGAGAATGTCTGTTTCTC 58.940 41.667 0.12 6.50 42.90 2.87
124 125 5.041191 ACCAACTGAGAATGTCTGTTTCT 57.959 39.130 0.12 0.00 42.90 2.52
125 126 4.214332 GGACCAACTGAGAATGTCTGTTTC 59.786 45.833 0.12 0.00 42.90 2.78
126 127 4.137543 GGACCAACTGAGAATGTCTGTTT 58.862 43.478 0.12 0.00 42.90 2.83
127 128 3.136443 TGGACCAACTGAGAATGTCTGTT 59.864 43.478 0.00 0.00 45.49 3.16
128 129 2.705658 TGGACCAACTGAGAATGTCTGT 59.294 45.455 0.00 0.00 38.92 3.41
129 130 3.070018 GTGGACCAACTGAGAATGTCTG 58.930 50.000 0.00 0.00 0.00 3.51
130 131 2.975489 AGTGGACCAACTGAGAATGTCT 59.025 45.455 0.00 0.00 0.00 3.41
131 132 3.409026 AGTGGACCAACTGAGAATGTC 57.591 47.619 0.00 0.00 0.00 3.06
132 133 5.505181 AATAGTGGACCAACTGAGAATGT 57.495 39.130 0.00 0.00 0.00 2.71
133 134 5.525378 GCTAATAGTGGACCAACTGAGAATG 59.475 44.000 0.00 0.00 0.00 2.67
134 135 5.675538 GCTAATAGTGGACCAACTGAGAAT 58.324 41.667 0.00 0.00 0.00 2.40
135 136 4.381612 CGCTAATAGTGGACCAACTGAGAA 60.382 45.833 0.00 0.00 0.00 2.87
136 137 3.130516 CGCTAATAGTGGACCAACTGAGA 59.869 47.826 0.00 0.00 0.00 3.27
137 138 3.130516 TCGCTAATAGTGGACCAACTGAG 59.869 47.826 0.00 0.00 0.00 3.35
138 139 3.093814 TCGCTAATAGTGGACCAACTGA 58.906 45.455 0.00 0.00 0.00 3.41
139 140 3.448686 CTCGCTAATAGTGGACCAACTG 58.551 50.000 0.00 0.00 0.00 3.16
140 141 2.431057 CCTCGCTAATAGTGGACCAACT 59.569 50.000 0.00 0.00 0.00 3.16
141 142 2.822764 CCTCGCTAATAGTGGACCAAC 58.177 52.381 0.00 0.00 0.00 3.77
142 143 1.138266 GCCTCGCTAATAGTGGACCAA 59.862 52.381 0.00 0.00 0.00 3.67
143 144 0.750850 GCCTCGCTAATAGTGGACCA 59.249 55.000 0.58 0.00 0.00 4.02
144 145 0.033642 GGCCTCGCTAATAGTGGACC 59.966 60.000 0.00 0.00 0.00 4.46
145 146 1.041437 AGGCCTCGCTAATAGTGGAC 58.959 55.000 0.00 0.00 0.00 4.02
146 147 2.670019 TAGGCCTCGCTAATAGTGGA 57.330 50.000 9.68 0.00 0.00 4.02
147 148 3.069729 ACTTTAGGCCTCGCTAATAGTGG 59.930 47.826 9.68 0.00 0.00 4.00
148 149 4.038162 AGACTTTAGGCCTCGCTAATAGTG 59.962 45.833 9.68 0.00 0.00 2.74
149 150 4.216708 AGACTTTAGGCCTCGCTAATAGT 58.783 43.478 9.68 1.04 0.00 2.12
150 151 4.857509 AGACTTTAGGCCTCGCTAATAG 57.142 45.455 9.68 0.00 0.00 1.73
151 152 4.647853 TGAAGACTTTAGGCCTCGCTAATA 59.352 41.667 9.68 0.00 0.00 0.98
152 153 3.451178 TGAAGACTTTAGGCCTCGCTAAT 59.549 43.478 9.68 0.00 0.00 1.73
153 154 2.829720 TGAAGACTTTAGGCCTCGCTAA 59.170 45.455 9.68 0.00 0.00 3.09
154 155 2.165845 GTGAAGACTTTAGGCCTCGCTA 59.834 50.000 9.68 0.00 0.00 4.26
155 156 1.066787 GTGAAGACTTTAGGCCTCGCT 60.067 52.381 9.68 0.00 0.00 4.93
156 157 1.066787 AGTGAAGACTTTAGGCCTCGC 60.067 52.381 9.68 0.00 0.00 5.03
157 158 3.254892 GAAGTGAAGACTTTAGGCCTCG 58.745 50.000 9.68 0.88 42.80 4.63
158 159 4.273148 TGAAGTGAAGACTTTAGGCCTC 57.727 45.455 9.68 0.00 42.80 4.70
159 160 4.287067 TGATGAAGTGAAGACTTTAGGCCT 59.713 41.667 11.78 11.78 42.80 5.19
160 161 4.579869 TGATGAAGTGAAGACTTTAGGCC 58.420 43.478 0.00 0.00 42.80 5.19
161 162 5.241662 ACTGATGAAGTGAAGACTTTAGGC 58.758 41.667 0.00 0.00 42.80 3.93
162 163 6.696411 AGACTGATGAAGTGAAGACTTTAGG 58.304 40.000 0.00 0.00 42.80 2.69
163 164 8.735315 TCTAGACTGATGAAGTGAAGACTTTAG 58.265 37.037 0.00 0.00 42.80 1.85
164 165 8.637196 TCTAGACTGATGAAGTGAAGACTTTA 57.363 34.615 0.00 0.00 42.80 1.85
165 166 7.531857 TCTAGACTGATGAAGTGAAGACTTT 57.468 36.000 0.00 0.00 42.80 2.66
166 167 7.531857 TTCTAGACTGATGAAGTGAAGACTT 57.468 36.000 0.00 0.00 45.59 3.01
167 168 7.531857 TTTCTAGACTGATGAAGTGAAGACT 57.468 36.000 0.00 0.00 40.07 3.24
168 169 8.031864 TCATTTCTAGACTGATGAAGTGAAGAC 58.968 37.037 9.17 0.00 40.07 3.01
169 170 8.127150 TCATTTCTAGACTGATGAAGTGAAGA 57.873 34.615 9.17 0.00 40.07 2.87
170 171 8.768957 TTCATTTCTAGACTGATGAAGTGAAG 57.231 34.615 15.94 0.00 39.62 3.02
171 172 9.730705 AATTCATTTCTAGACTGATGAAGTGAA 57.269 29.630 20.87 18.24 44.35 3.18
217 218 0.194587 CCTGGGATGGGAGGGAGTAT 59.805 60.000 0.00 0.00 0.00 2.12
844 845 4.612412 GAACCGGTGGACCACGCA 62.612 66.667 18.40 0.00 34.83 5.24
1122 1123 3.067320 GGGACATACTGGACGTAACTACC 59.933 52.174 0.00 0.00 0.00 3.18
1468 1469 2.843401 TTGCCTTTGCTCGGTAGTTA 57.157 45.000 0.00 0.00 38.71 2.24
1763 1766 2.061773 CTCTTCTTCTTTGCTCGCGAA 58.938 47.619 11.33 0.00 0.00 4.70
1979 1982 2.349580 CGCTTTCAATCAATCTCGCTCA 59.650 45.455 0.00 0.00 0.00 4.26
1982 1985 1.063174 AGCGCTTTCAATCAATCTCGC 59.937 47.619 2.64 0.00 41.36 5.03
1983 1986 2.094894 ACAGCGCTTTCAATCAATCTCG 59.905 45.455 7.50 0.00 0.00 4.04
1984 1987 3.423571 CACAGCGCTTTCAATCAATCTC 58.576 45.455 7.50 0.00 0.00 2.75
1985 1988 2.415090 GCACAGCGCTTTCAATCAATCT 60.415 45.455 7.50 0.00 37.77 2.40
1986 1989 1.916000 GCACAGCGCTTTCAATCAATC 59.084 47.619 7.50 0.00 37.77 2.67
1987 1990 1.403249 GGCACAGCGCTTTCAATCAAT 60.403 47.619 7.50 0.00 41.91 2.57
1988 1991 0.039256 GGCACAGCGCTTTCAATCAA 60.039 50.000 7.50 0.00 41.91 2.57
1989 1992 1.171549 TGGCACAGCGCTTTCAATCA 61.172 50.000 7.50 0.00 41.91 2.57
1990 1993 0.039256 TTGGCACAGCGCTTTCAATC 60.039 50.000 7.50 0.00 42.39 2.67
1991 1994 0.318955 GTTGGCACAGCGCTTTCAAT 60.319 50.000 7.50 0.00 42.39 2.57
1992 1995 1.065600 GTTGGCACAGCGCTTTCAA 59.934 52.632 7.50 7.30 42.39 2.69
1993 1996 1.383456 AAGTTGGCACAGCGCTTTCA 61.383 50.000 7.50 0.14 46.73 2.69
1994 1997 0.936297 CAAGTTGGCACAGCGCTTTC 60.936 55.000 7.50 0.00 46.73 2.62
1995 1998 1.066257 CAAGTTGGCACAGCGCTTT 59.934 52.632 7.50 0.00 46.73 3.51
1996 1999 2.723746 CAAGTTGGCACAGCGCTT 59.276 55.556 7.50 0.00 46.73 4.68
1997 2000 3.969802 GCAAGTTGGCACAGCGCT 61.970 61.111 2.64 2.64 46.73 5.92
2011 2014 4.751098 ACCGTCTAAAAATCTTGTACGCAA 59.249 37.500 0.00 0.00 0.00 4.85
2012 2015 4.309099 ACCGTCTAAAAATCTTGTACGCA 58.691 39.130 0.00 0.00 0.00 5.24
2013 2016 4.916099 ACCGTCTAAAAATCTTGTACGC 57.084 40.909 0.00 0.00 0.00 4.42
2014 2017 6.456447 TGAACCGTCTAAAAATCTTGTACG 57.544 37.500 0.00 0.00 0.00 3.67
2015 2018 8.080083 TCTTGAACCGTCTAAAAATCTTGTAC 57.920 34.615 0.00 0.00 0.00 2.90
2016 2019 8.665643 TTCTTGAACCGTCTAAAAATCTTGTA 57.334 30.769 0.00 0.00 0.00 2.41
2017 2020 7.562454 TTCTTGAACCGTCTAAAAATCTTGT 57.438 32.000 0.00 0.00 0.00 3.16
2018 2021 9.118236 GAATTCTTGAACCGTCTAAAAATCTTG 57.882 33.333 0.00 0.00 0.00 3.02
2019 2022 8.015658 CGAATTCTTGAACCGTCTAAAAATCTT 58.984 33.333 3.52 0.00 0.00 2.40
2020 2023 7.386848 TCGAATTCTTGAACCGTCTAAAAATCT 59.613 33.333 3.52 0.00 0.00 2.40
2021 2024 7.515643 TCGAATTCTTGAACCGTCTAAAAATC 58.484 34.615 3.52 0.00 0.00 2.17
2022 2025 7.429636 TCGAATTCTTGAACCGTCTAAAAAT 57.570 32.000 3.52 0.00 0.00 1.82
2023 2026 6.847956 TCGAATTCTTGAACCGTCTAAAAA 57.152 33.333 3.52 0.00 0.00 1.94
2024 2027 6.847956 TTCGAATTCTTGAACCGTCTAAAA 57.152 33.333 3.52 0.00 0.00 1.52
2025 2028 6.847956 TTTCGAATTCTTGAACCGTCTAAA 57.152 33.333 0.00 0.00 0.00 1.85
2026 2029 6.847956 TTTTCGAATTCTTGAACCGTCTAA 57.152 33.333 0.00 0.00 0.00 2.10
2027 2030 6.480981 ACTTTTTCGAATTCTTGAACCGTCTA 59.519 34.615 0.00 0.00 0.00 2.59
2028 2031 5.296035 ACTTTTTCGAATTCTTGAACCGTCT 59.704 36.000 0.00 0.00 0.00 4.18
2029 2032 5.507974 ACTTTTTCGAATTCTTGAACCGTC 58.492 37.500 0.00 0.00 0.00 4.79
2030 2033 5.494632 ACTTTTTCGAATTCTTGAACCGT 57.505 34.783 0.00 0.00 0.00 4.83
2031 2034 6.806120 AAACTTTTTCGAATTCTTGAACCG 57.194 33.333 0.00 0.00 0.00 4.44
2124 2127 9.391006 GGTTTCCTTTGTTTTATTCTTTTTCCT 57.609 29.630 0.00 0.00 0.00 3.36
2125 2128 8.617809 GGGTTTCCTTTGTTTTATTCTTTTTCC 58.382 33.333 0.00 0.00 0.00 3.13
2126 2129 9.391006 AGGGTTTCCTTTGTTTTATTCTTTTTC 57.609 29.630 0.00 0.00 41.56 2.29
2129 2132 9.209048 ACTAGGGTTTCCTTTGTTTTATTCTTT 57.791 29.630 0.00 0.00 41.56 2.52
2130 2133 8.777578 ACTAGGGTTTCCTTTGTTTTATTCTT 57.222 30.769 0.00 0.00 41.56 2.52
2131 2134 8.777578 AACTAGGGTTTCCTTTGTTTTATTCT 57.222 30.769 0.00 0.00 41.56 2.40
2132 2135 8.635328 TGAACTAGGGTTTCCTTTGTTTTATTC 58.365 33.333 0.00 0.00 41.56 1.75
2133 2136 8.541899 TGAACTAGGGTTTCCTTTGTTTTATT 57.458 30.769 0.00 0.00 41.56 1.40
2134 2137 8.002459 TCTGAACTAGGGTTTCCTTTGTTTTAT 58.998 33.333 0.00 0.00 41.56 1.40
2135 2138 7.348033 TCTGAACTAGGGTTTCCTTTGTTTTA 58.652 34.615 0.00 0.00 41.56 1.52
2136 2139 6.192044 TCTGAACTAGGGTTTCCTTTGTTTT 58.808 36.000 0.00 0.00 41.56 2.43
2137 2140 5.762279 TCTGAACTAGGGTTTCCTTTGTTT 58.238 37.500 0.00 0.00 41.56 2.83
2138 2141 5.382664 TCTGAACTAGGGTTTCCTTTGTT 57.617 39.130 0.00 0.00 41.56 2.83
2139 2142 5.382664 TTCTGAACTAGGGTTTCCTTTGT 57.617 39.130 0.00 0.00 41.56 2.83
2140 2143 6.709018 TTTTCTGAACTAGGGTTTCCTTTG 57.291 37.500 0.00 0.00 41.56 2.77
2194 2197 0.318441 GCTGGTTTTGGGAAGCTTCC 59.682 55.000 33.67 33.67 46.82 3.46
2195 2198 1.039856 TGCTGGTTTTGGGAAGCTTC 58.960 50.000 18.54 18.54 36.60 3.86
2196 2199 1.620323 GATGCTGGTTTTGGGAAGCTT 59.380 47.619 0.00 0.00 36.60 3.74
2197 2200 1.203100 AGATGCTGGTTTTGGGAAGCT 60.203 47.619 0.00 0.00 36.60 3.74
2198 2201 1.260544 AGATGCTGGTTTTGGGAAGC 58.739 50.000 0.00 0.00 36.18 3.86
2199 2202 4.952335 AGATTAGATGCTGGTTTTGGGAAG 59.048 41.667 0.00 0.00 0.00 3.46
2200 2203 4.934356 AGATTAGATGCTGGTTTTGGGAA 58.066 39.130 0.00 0.00 0.00 3.97
2201 2204 4.591321 AGATTAGATGCTGGTTTTGGGA 57.409 40.909 0.00 0.00 0.00 4.37
2202 2205 5.665916 AAAGATTAGATGCTGGTTTTGGG 57.334 39.130 0.00 0.00 0.00 4.12
2203 2206 8.055279 TCTAAAAGATTAGATGCTGGTTTTGG 57.945 34.615 0.00 0.00 41.99 3.28
2204 2207 7.699812 GCTCTAAAAGATTAGATGCTGGTTTTG 59.300 37.037 0.00 0.00 44.91 2.44
2205 2208 7.613411 AGCTCTAAAAGATTAGATGCTGGTTTT 59.387 33.333 15.37 0.00 44.91 2.43
2206 2209 7.115414 AGCTCTAAAAGATTAGATGCTGGTTT 58.885 34.615 15.37 0.00 44.91 3.27
2207 2210 6.657875 AGCTCTAAAAGATTAGATGCTGGTT 58.342 36.000 15.37 0.00 44.91 3.67
2208 2211 6.245890 AGCTCTAAAAGATTAGATGCTGGT 57.754 37.500 15.37 3.27 44.91 4.00
2209 2212 6.204495 GGAAGCTCTAAAAGATTAGATGCTGG 59.796 42.308 16.17 2.41 44.91 4.85
2210 2213 6.765036 TGGAAGCTCTAAAAGATTAGATGCTG 59.235 38.462 16.17 2.67 44.91 4.41
2211 2214 6.893583 TGGAAGCTCTAAAAGATTAGATGCT 58.106 36.000 12.57 12.57 44.91 3.79
2212 2215 7.559590 TTGGAAGCTCTAAAAGATTAGATGC 57.440 36.000 0.00 5.68 44.91 3.91
2215 2218 8.793592 GGTTTTTGGAAGCTCTAAAAGATTAGA 58.206 33.333 0.00 0.00 44.07 2.10
2216 2219 7.750903 CGGTTTTTGGAAGCTCTAAAAGATTAG 59.249 37.037 0.00 0.00 37.94 1.73
2217 2220 7.308951 CCGGTTTTTGGAAGCTCTAAAAGATTA 60.309 37.037 0.00 0.00 37.94 1.75
2218 2221 6.447162 CGGTTTTTGGAAGCTCTAAAAGATT 58.553 36.000 0.00 0.00 37.94 2.40
2219 2222 5.048013 CCGGTTTTTGGAAGCTCTAAAAGAT 60.048 40.000 0.00 0.00 37.94 2.40
2220 2223 4.277423 CCGGTTTTTGGAAGCTCTAAAAGA 59.723 41.667 0.00 0.00 37.94 2.52
2221 2224 4.277423 TCCGGTTTTTGGAAGCTCTAAAAG 59.723 41.667 0.00 0.00 37.94 2.27
2222 2225 4.208746 TCCGGTTTTTGGAAGCTCTAAAA 58.791 39.130 0.00 0.00 35.50 1.52
2223 2226 3.818773 CTCCGGTTTTTGGAAGCTCTAAA 59.181 43.478 0.00 0.00 34.44 1.85
2224 2227 3.408634 CTCCGGTTTTTGGAAGCTCTAA 58.591 45.455 0.00 0.00 34.44 2.10
2225 2228 2.874457 GCTCCGGTTTTTGGAAGCTCTA 60.874 50.000 0.00 0.00 34.44 2.43
2226 2229 1.897560 CTCCGGTTTTTGGAAGCTCT 58.102 50.000 0.00 0.00 34.44 4.09
2227 2230 0.241213 GCTCCGGTTTTTGGAAGCTC 59.759 55.000 0.00 0.00 34.44 4.09
2228 2231 0.467290 TGCTCCGGTTTTTGGAAGCT 60.467 50.000 0.00 0.00 34.44 3.74
2229 2232 0.039165 CTGCTCCGGTTTTTGGAAGC 60.039 55.000 0.00 0.00 34.44 3.86
2230 2233 1.604604 TCTGCTCCGGTTTTTGGAAG 58.395 50.000 0.00 0.00 34.44 3.46
2231 2234 2.060050 TTCTGCTCCGGTTTTTGGAA 57.940 45.000 0.00 0.00 34.44 3.53
2232 2235 2.060050 TTTCTGCTCCGGTTTTTGGA 57.940 45.000 0.00 0.00 0.00 3.53
2233 2236 3.385193 AATTTCTGCTCCGGTTTTTGG 57.615 42.857 0.00 0.00 0.00 3.28
2234 2237 3.740832 GGAAATTTCTGCTCCGGTTTTTG 59.259 43.478 17.42 0.00 0.00 2.44
2235 2238 3.641436 AGGAAATTTCTGCTCCGGTTTTT 59.359 39.130 17.42 0.00 34.22 1.94
2236 2239 3.230976 AGGAAATTTCTGCTCCGGTTTT 58.769 40.909 17.42 0.00 34.22 2.43
2237 2240 2.876581 AGGAAATTTCTGCTCCGGTTT 58.123 42.857 17.42 0.00 34.22 3.27
2238 2241 2.586648 AGGAAATTTCTGCTCCGGTT 57.413 45.000 17.42 0.00 34.22 4.44
2239 2242 2.558359 CAAAGGAAATTTCTGCTCCGGT 59.442 45.455 17.42 0.00 34.22 5.28
2240 2243 2.094545 CCAAAGGAAATTTCTGCTCCGG 60.095 50.000 17.42 0.00 34.22 5.14
2241 2244 2.558359 ACCAAAGGAAATTTCTGCTCCG 59.442 45.455 17.42 4.57 34.22 4.63
2242 2245 3.862264 GCACCAAAGGAAATTTCTGCTCC 60.862 47.826 17.42 1.47 32.35 4.70
2243 2246 3.320626 GCACCAAAGGAAATTTCTGCTC 58.679 45.455 17.42 1.35 32.35 4.26
2244 2247 2.288395 CGCACCAAAGGAAATTTCTGCT 60.288 45.455 17.42 4.76 32.67 4.24
2245 2248 2.061028 CGCACCAAAGGAAATTTCTGC 58.939 47.619 17.42 15.80 31.98 4.26
2246 2249 2.061028 GCGCACCAAAGGAAATTTCTG 58.939 47.619 17.42 8.32 0.00 3.02
2247 2250 1.963515 AGCGCACCAAAGGAAATTTCT 59.036 42.857 17.42 1.61 0.00 2.52
2248 2251 2.029918 AGAGCGCACCAAAGGAAATTTC 60.030 45.455 11.47 9.83 0.00 2.17
2249 2252 1.963515 AGAGCGCACCAAAGGAAATTT 59.036 42.857 11.47 0.00 0.00 1.82
2250 2253 1.620822 AGAGCGCACCAAAGGAAATT 58.379 45.000 11.47 0.00 0.00 1.82
2251 2254 1.620822 AAGAGCGCACCAAAGGAAAT 58.379 45.000 11.47 0.00 0.00 2.17
2252 2255 2.264005 TAAGAGCGCACCAAAGGAAA 57.736 45.000 11.47 0.00 0.00 3.13
2253 2256 1.877443 GTTAAGAGCGCACCAAAGGAA 59.123 47.619 11.47 0.00 0.00 3.36
2254 2257 1.071699 AGTTAAGAGCGCACCAAAGGA 59.928 47.619 11.47 0.00 0.00 3.36
2255 2258 1.197721 CAGTTAAGAGCGCACCAAAGG 59.802 52.381 11.47 0.00 0.00 3.11
2256 2259 1.197721 CCAGTTAAGAGCGCACCAAAG 59.802 52.381 11.47 0.00 0.00 2.77
2257 2260 1.234821 CCAGTTAAGAGCGCACCAAA 58.765 50.000 11.47 0.00 0.00 3.28
2258 2261 0.605319 CCCAGTTAAGAGCGCACCAA 60.605 55.000 11.47 0.00 0.00 3.67
2259 2262 1.003839 CCCAGTTAAGAGCGCACCA 60.004 57.895 11.47 0.00 0.00 4.17
2260 2263 2.399356 GCCCAGTTAAGAGCGCACC 61.399 63.158 11.47 0.00 0.00 5.01
2261 2264 2.399356 GGCCCAGTTAAGAGCGCAC 61.399 63.158 11.47 2.25 0.00 5.34
2262 2265 2.046314 GGCCCAGTTAAGAGCGCA 60.046 61.111 11.47 0.00 0.00 6.09
2263 2266 2.046314 TGGCCCAGTTAAGAGCGC 60.046 61.111 0.00 0.00 0.00 5.92
2264 2267 2.109126 GCTGGCCCAGTTAAGAGCG 61.109 63.158 13.35 0.00 33.43 5.03
2265 2268 1.750780 GGCTGGCCCAGTTAAGAGC 60.751 63.158 13.35 0.00 33.43 4.09
2266 2269 4.645809 GGCTGGCCCAGTTAAGAG 57.354 61.111 13.35 0.00 33.43 2.85
2276 2279 1.106285 CTGTTTTCTATGGGCTGGCC 58.894 55.000 14.23 14.23 0.00 5.36
2277 2280 0.457443 GCTGTTTTCTATGGGCTGGC 59.543 55.000 0.00 0.00 0.00 4.85
2278 2281 1.838112 TGCTGTTTTCTATGGGCTGG 58.162 50.000 0.00 0.00 0.00 4.85
2279 2282 2.756760 ACATGCTGTTTTCTATGGGCTG 59.243 45.455 0.00 0.00 0.00 4.85
2280 2283 3.091633 ACATGCTGTTTTCTATGGGCT 57.908 42.857 0.00 0.00 0.00 5.19
2281 2284 3.316308 CCTACATGCTGTTTTCTATGGGC 59.684 47.826 0.00 0.00 0.00 5.36
2282 2285 3.316308 GCCTACATGCTGTTTTCTATGGG 59.684 47.826 0.00 0.00 0.00 4.00
2283 2286 3.316308 GGCCTACATGCTGTTTTCTATGG 59.684 47.826 0.00 0.00 0.00 2.74
2284 2287 3.316308 GGGCCTACATGCTGTTTTCTATG 59.684 47.826 0.84 0.00 0.00 2.23
2285 2288 3.555966 GGGCCTACATGCTGTTTTCTAT 58.444 45.455 0.84 0.00 0.00 1.98
2286 2289 2.356741 GGGGCCTACATGCTGTTTTCTA 60.357 50.000 0.84 0.00 0.00 2.10
2287 2290 1.616994 GGGGCCTACATGCTGTTTTCT 60.617 52.381 0.84 0.00 0.00 2.52
2288 2291 0.817654 GGGGCCTACATGCTGTTTTC 59.182 55.000 0.84 0.00 0.00 2.29
2289 2292 0.614697 GGGGGCCTACATGCTGTTTT 60.615 55.000 0.84 0.00 0.00 2.43
2290 2293 1.000359 GGGGGCCTACATGCTGTTT 60.000 57.895 0.84 0.00 0.00 2.83
2291 2294 2.683475 GGGGGCCTACATGCTGTT 59.317 61.111 0.84 0.00 0.00 3.16
2292 2295 3.797353 CGGGGGCCTACATGCTGT 61.797 66.667 0.84 0.00 0.00 4.40
2295 2298 3.190738 TATGCGGGGGCCTACATGC 62.191 63.158 0.84 5.16 0.00 4.06
2296 2299 3.156714 TATGCGGGGGCCTACATG 58.843 61.111 0.84 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.