Multiple sequence alignment - TraesCS7A01G442600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G442600 chr7A 100.000 2315 0 0 1 2315 636901400 636899086 0.000000e+00 4276
1 TraesCS7A01G442600 chr7A 99.355 155 1 0 1 155 725607460 725607306 4.870000e-72 281
2 TraesCS7A01G442600 chr7A 88.421 95 11 0 1719 1813 57113591 57113685 5.230000e-22 115
3 TraesCS7A01G442600 chr7A 93.878 49 3 0 1560 1608 662663074 662663026 8.870000e-10 75
4 TraesCS7A01G442600 chr7D 92.493 706 38 7 669 1367 550982392 550981695 0.000000e+00 996
5 TraesCS7A01G442600 chr7D 80.588 340 47 11 999 1325 550986970 550986637 6.390000e-61 244
6 TraesCS7A01G442600 chr7D 93.377 151 9 1 2166 2315 550980444 550980294 2.990000e-54 222
7 TraesCS7A01G442600 chr7D 88.757 169 14 2 1881 2049 550980802 550980639 3.900000e-48 202
8 TraesCS7A01G442600 chr7D 95.745 94 3 1 1602 1695 5068178 5068086 1.430000e-32 150
9 TraesCS7A01G442600 chr7D 95.745 94 3 1 1602 1695 22964349 22964257 1.430000e-32 150
10 TraesCS7A01G442600 chr7B 89.070 796 64 15 664 1450 595798741 595797960 0.000000e+00 966
11 TraesCS7A01G442600 chr7B 91.822 269 19 3 2049 2315 595797155 595796888 2.810000e-99 372
12 TraesCS7A01G442600 chr7B 94.872 234 12 0 155 388 595801778 595801545 1.310000e-97 366
13 TraesCS7A01G442600 chr7B 77.564 468 76 16 865 1319 595804124 595803673 2.950000e-64 255
14 TraesCS7A01G442600 chr7B 92.754 138 7 1 471 608 595799072 595798938 1.810000e-46 196
15 TraesCS7A01G442600 chr7B 90.476 105 10 0 1709 1813 674235953 674235849 3.100000e-29 139
16 TraesCS7A01G442600 chr7B 88.298 94 6 4 1972 2060 595797264 595797171 8.750000e-20 108
17 TraesCS7A01G442600 chr5B 98.710 155 2 0 1 155 9271309 9271463 2.270000e-70 276
18 TraesCS7A01G442600 chr5B 86.408 103 13 1 1711 1813 393695088 393695189 6.760000e-21 111
19 TraesCS7A01G442600 chr2A 98.718 156 1 1 1 155 738047098 738047253 2.270000e-70 276
20 TraesCS7A01G442600 chr2A 98.710 155 1 1 1 154 147546861 147547015 8.150000e-70 274
21 TraesCS7A01G442600 chr2B 98.077 156 2 1 1 155 732043059 732042904 1.050000e-68 270
22 TraesCS7A01G442600 chr2B 98.077 156 2 1 1 155 778025396 778025551 1.050000e-68 270
23 TraesCS7A01G442600 chr2B 94.792 96 4 1 1600 1695 150613557 150613463 5.150000e-32 148
24 TraesCS7A01G442600 chr2B 90.000 100 9 1 1714 1813 770023000 770023098 6.710000e-26 128
25 TraesCS7A01G442600 chr2B 89.216 102 10 1 1712 1813 403704798 403704698 2.410000e-25 126
26 TraesCS7A01G442600 chr2B 87.879 99 10 2 1715 1813 596481573 596481477 5.230000e-22 115
27 TraesCS7A01G442600 chr1B 98.077 156 2 1 1 155 415388368 415388213 1.050000e-68 270
28 TraesCS7A01G442600 chr1B 96.341 164 5 1 1 163 669037422 669037259 3.790000e-68 268
29 TraesCS7A01G442600 chr1D 97.436 156 4 0 1 156 11127704 11127859 1.360000e-67 267
30 TraesCS7A01G442600 chr1D 96.739 92 1 2 1609 1700 355081130 355081219 3.980000e-33 152
31 TraesCS7A01G442600 chr4A 95.833 96 3 1 1604 1699 556768045 556767951 1.110000e-33 154
32 TraesCS7A01G442600 chr4A 85.849 106 13 2 1710 1813 713495622 713495517 6.760000e-21 111
33 TraesCS7A01G442600 chr3D 94.898 98 2 3 1599 1695 54370402 54370497 1.430000e-32 150
34 TraesCS7A01G442600 chr3D 94.792 96 3 2 1601 1696 303788549 303788456 5.150000e-32 148
35 TraesCS7A01G442600 chr3D 93.878 98 4 2 1602 1699 179456639 179456734 1.850000e-31 147
36 TraesCS7A01G442600 chr2D 94.845 97 3 2 1604 1700 619321003 619321097 1.430000e-32 150
37 TraesCS7A01G442600 chr4B 88.421 95 10 1 1719 1813 317196572 317196665 1.880000e-21 113
38 TraesCS7A01G442600 chr4B 86.275 102 12 2 1710 1810 22171697 22171597 2.430000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G442600 chr7A 636899086 636901400 2314 True 4276.000000 4276 100.000000 1 2315 1 chr7A.!!$R1 2314
1 TraesCS7A01G442600 chr7D 550980294 550982392 2098 True 473.333333 996 91.542333 669 2315 3 chr7D.!!$R4 1646
2 TraesCS7A01G442600 chr7B 595796888 595804124 7236 True 377.166667 966 89.063333 155 2315 6 chr7B.!!$R2 2160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 5490 0.17576 AACTATCATCACGCGTGGCT 59.824 50.0 36.41 22.47 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 6675 0.24746 TGAGCGCTTGCATCTGTACT 59.753 50.0 13.26 0.0 42.66 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.948341 TTTTGATAGGAGTAGCGGCATA 57.052 40.909 1.45 0.00 0.00 3.14
26 27 4.456280 TTGATAGGAGTAGCGGCATATG 57.544 45.455 1.45 0.00 0.00 1.78
27 28 3.431415 TGATAGGAGTAGCGGCATATGT 58.569 45.455 1.45 0.00 0.00 2.29
28 29 3.832490 TGATAGGAGTAGCGGCATATGTT 59.168 43.478 1.45 0.00 0.00 2.71
29 30 2.533266 AGGAGTAGCGGCATATGTTG 57.467 50.000 1.45 0.00 0.00 3.33
40 41 3.088194 GCATATGTTGCCAAGATGGTG 57.912 47.619 4.29 0.00 46.15 4.17
41 42 2.223876 GCATATGTTGCCAAGATGGTGG 60.224 50.000 4.29 0.00 46.15 4.61
42 43 3.289836 CATATGTTGCCAAGATGGTGGA 58.710 45.455 0.00 0.00 41.65 4.02
44 45 2.307496 TGTTGCCAAGATGGTGGATT 57.693 45.000 0.00 0.00 41.65 3.01
45 46 2.170166 TGTTGCCAAGATGGTGGATTC 58.830 47.619 0.00 0.00 41.65 2.52
46 47 2.170166 GTTGCCAAGATGGTGGATTCA 58.830 47.619 0.00 0.00 41.65 2.57
47 48 2.133281 TGCCAAGATGGTGGATTCAG 57.867 50.000 0.00 0.00 41.65 3.02
48 49 1.634973 TGCCAAGATGGTGGATTCAGA 59.365 47.619 0.00 0.00 41.65 3.27
49 50 2.019984 GCCAAGATGGTGGATTCAGAC 58.980 52.381 0.00 0.00 41.65 3.51
50 51 2.618816 GCCAAGATGGTGGATTCAGACA 60.619 50.000 0.00 0.00 41.65 3.41
51 52 3.012518 CCAAGATGGTGGATTCAGACAC 58.987 50.000 0.00 0.00 41.65 3.67
52 53 3.559811 CCAAGATGGTGGATTCAGACACA 60.560 47.826 0.00 0.00 41.65 3.72
53 54 4.267536 CAAGATGGTGGATTCAGACACAT 58.732 43.478 0.00 0.00 39.31 3.21
54 55 4.581309 AGATGGTGGATTCAGACACATT 57.419 40.909 0.00 0.00 39.31 2.71
56 57 3.507162 TGGTGGATTCAGACACATTGT 57.493 42.857 0.00 0.00 39.31 2.71
58 59 3.569277 TGGTGGATTCAGACACATTGTTG 59.431 43.478 0.00 0.00 39.31 3.33
59 60 3.569701 GGTGGATTCAGACACATTGTTGT 59.430 43.478 0.00 0.00 39.31 3.32
60 61 4.759693 GGTGGATTCAGACACATTGTTGTA 59.240 41.667 0.00 0.00 39.31 2.41
61 62 5.240623 GGTGGATTCAGACACATTGTTGTAA 59.759 40.000 0.00 0.00 39.31 2.41
63 64 5.825151 TGGATTCAGACACATTGTTGTAACA 59.175 36.000 0.00 0.00 33.76 2.41
64 65 6.142817 GGATTCAGACACATTGTTGTAACAC 58.857 40.000 0.00 0.00 38.92 3.32
65 66 6.017109 GGATTCAGACACATTGTTGTAACACT 60.017 38.462 0.00 0.00 38.92 3.55
66 67 6.751514 TTCAGACACATTGTTGTAACACTT 57.248 33.333 0.00 0.00 38.92 3.16
67 68 6.751514 TCAGACACATTGTTGTAACACTTT 57.248 33.333 0.00 0.00 38.92 2.66
68 69 6.550843 TCAGACACATTGTTGTAACACTTTG 58.449 36.000 0.00 0.00 38.92 2.77
69 70 6.150307 TCAGACACATTGTTGTAACACTTTGT 59.850 34.615 6.60 6.60 38.92 2.83
70 71 7.334671 TCAGACACATTGTTGTAACACTTTGTA 59.665 33.333 6.81 0.00 38.92 2.41
71 72 7.428183 CAGACACATTGTTGTAACACTTTGTAC 59.572 37.037 6.81 0.00 38.92 2.90
72 73 6.252281 ACACATTGTTGTAACACTTTGTACG 58.748 36.000 5.45 0.00 38.92 3.67
73 74 5.679355 CACATTGTTGTAACACTTTGTACGG 59.321 40.000 0.00 0.00 38.92 4.02
74 75 5.354792 ACATTGTTGTAACACTTTGTACGGT 59.645 36.000 0.00 0.00 38.92 4.83
75 76 5.467902 TTGTTGTAACACTTTGTACGGTC 57.532 39.130 0.00 0.00 38.92 4.79
76 77 3.870419 TGTTGTAACACTTTGTACGGTCC 59.130 43.478 0.00 0.00 33.17 4.46
77 78 4.122046 GTTGTAACACTTTGTACGGTCCT 58.878 43.478 0.00 0.00 0.00 3.85
78 79 3.981211 TGTAACACTTTGTACGGTCCTC 58.019 45.455 0.00 0.00 0.00 3.71
79 80 2.144482 AACACTTTGTACGGTCCTCG 57.856 50.000 0.00 0.00 45.88 4.63
80 81 1.321474 ACACTTTGTACGGTCCTCGA 58.679 50.000 0.00 0.00 42.43 4.04
81 82 1.268899 ACACTTTGTACGGTCCTCGAG 59.731 52.381 5.13 5.13 42.43 4.04
82 83 1.538512 CACTTTGTACGGTCCTCGAGA 59.461 52.381 15.71 0.00 42.43 4.04
83 84 2.030540 CACTTTGTACGGTCCTCGAGAA 60.031 50.000 15.71 0.00 42.43 2.87
84 85 2.824341 ACTTTGTACGGTCCTCGAGAAT 59.176 45.455 15.71 0.00 42.43 2.40
86 87 4.460382 ACTTTGTACGGTCCTCGAGAATAA 59.540 41.667 15.71 0.00 42.43 1.40
87 88 5.126707 ACTTTGTACGGTCCTCGAGAATAAT 59.873 40.000 15.71 0.00 42.43 1.28
88 89 4.825546 TGTACGGTCCTCGAGAATAATC 57.174 45.455 15.71 0.00 42.43 1.75
90 91 4.641541 TGTACGGTCCTCGAGAATAATCAA 59.358 41.667 15.71 0.00 42.43 2.57
91 92 4.939052 ACGGTCCTCGAGAATAATCAAT 57.061 40.909 15.71 0.00 42.43 2.57
94 95 6.812998 ACGGTCCTCGAGAATAATCAATAAA 58.187 36.000 15.71 0.00 42.43 1.40
95 96 6.924060 ACGGTCCTCGAGAATAATCAATAAAG 59.076 38.462 15.71 0.00 42.43 1.85
96 97 6.924060 CGGTCCTCGAGAATAATCAATAAAGT 59.076 38.462 15.71 0.00 42.43 2.66
99 100 6.706270 TCCTCGAGAATAATCAATAAAGTGGC 59.294 38.462 15.71 0.00 0.00 5.01
100 101 6.073003 CCTCGAGAATAATCAATAAAGTGGCC 60.073 42.308 15.71 0.00 0.00 5.36
101 102 5.465390 TCGAGAATAATCAATAAAGTGGCCG 59.535 40.000 0.00 0.00 0.00 6.13
102 103 5.236478 CGAGAATAATCAATAAAGTGGCCGT 59.764 40.000 0.00 0.00 0.00 5.68
103 104 6.422701 CGAGAATAATCAATAAAGTGGCCGTA 59.577 38.462 0.00 0.00 0.00 4.02
104 105 7.117812 CGAGAATAATCAATAAAGTGGCCGTAT 59.882 37.037 0.00 0.00 0.00 3.06
105 106 8.099364 AGAATAATCAATAAAGTGGCCGTATG 57.901 34.615 0.00 0.00 0.00 2.39
108 109 3.550820 TCAATAAAGTGGCCGTATGCAT 58.449 40.909 3.79 3.79 43.89 3.96
109 110 3.563808 TCAATAAAGTGGCCGTATGCATC 59.436 43.478 0.19 0.00 43.89 3.91
110 111 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
113 114 1.598130 GTGGCCGTATGCATCTCCC 60.598 63.158 0.19 0.17 43.89 4.30
114 115 2.069430 TGGCCGTATGCATCTCCCA 61.069 57.895 0.19 3.16 43.89 4.37
115 116 1.302033 GGCCGTATGCATCTCCCAG 60.302 63.158 0.19 0.00 43.89 4.45
116 117 1.748403 GCCGTATGCATCTCCCAGA 59.252 57.895 0.19 0.00 40.77 3.86
117 118 0.322975 GCCGTATGCATCTCCCAGAT 59.677 55.000 0.19 0.00 40.77 2.90
127 128 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
128 129 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
136 137 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
189 2382 2.578021 AGAAGCATGTGGGTGATAGGTT 59.422 45.455 0.00 0.00 0.00 3.50
228 2421 3.220110 AGATAGGCGACGGATTGTAGAA 58.780 45.455 0.00 0.00 0.00 2.10
231 2424 1.202533 AGGCGACGGATTGTAGAATGG 60.203 52.381 0.00 0.00 0.00 3.16
239 2432 5.313712 ACGGATTGTAGAATGGTTTGTTCT 58.686 37.500 0.00 0.00 39.19 3.01
287 2480 1.820906 CATGCAGGACCGTCCCATG 60.821 63.158 14.32 16.19 37.19 3.66
337 2530 6.680874 TGGCTTCGTTTTGTCTAGTAAAAA 57.319 33.333 8.51 5.59 0.00 1.94
341 2534 7.747799 GGCTTCGTTTTGTCTAGTAAAAATACC 59.252 37.037 8.51 4.75 0.00 2.73
358 2551 6.949352 AAATACCACAGATTGATTAGCCAG 57.051 37.500 0.00 0.00 0.00 4.85
365 2558 5.413833 CACAGATTGATTAGCCAGAACAAGT 59.586 40.000 0.00 0.00 0.00 3.16
385 2578 1.873270 GCGAATCAAACCCACCCCAC 61.873 60.000 0.00 0.00 0.00 4.61
388 2581 0.471022 AATCAAACCCACCCCACCAC 60.471 55.000 0.00 0.00 0.00 4.16
390 2583 1.832167 CAAACCCACCCCACCACTG 60.832 63.158 0.00 0.00 0.00 3.66
391 2584 2.009882 AAACCCACCCCACCACTGA 61.010 57.895 0.00 0.00 0.00 3.41
392 2585 2.292785 AAACCCACCCCACCACTGAC 62.293 60.000 0.00 0.00 0.00 3.51
394 2587 2.538141 CCCACCCCACCACTGACAT 61.538 63.158 0.00 0.00 0.00 3.06
395 2588 1.002134 CCACCCCACCACTGACATC 60.002 63.158 0.00 0.00 0.00 3.06
396 2589 1.002134 CACCCCACCACTGACATCC 60.002 63.158 0.00 0.00 0.00 3.51
397 2590 2.231380 ACCCCACCACTGACATCCC 61.231 63.158 0.00 0.00 0.00 3.85
398 2591 2.677228 CCCACCACTGACATCCCC 59.323 66.667 0.00 0.00 0.00 4.81
399 2592 2.230653 CCCACCACTGACATCCCCA 61.231 63.158 0.00 0.00 0.00 4.96
400 2593 1.300963 CCACCACTGACATCCCCAG 59.699 63.158 0.00 0.00 37.64 4.45
401 2594 1.377725 CACCACTGACATCCCCAGC 60.378 63.158 0.00 0.00 35.14 4.85
402 2595 2.273449 CCACTGACATCCCCAGCC 59.727 66.667 0.00 0.00 35.14 4.85
403 2596 2.124983 CACTGACATCCCCAGCCG 60.125 66.667 0.00 0.00 35.14 5.52
404 2597 4.101448 ACTGACATCCCCAGCCGC 62.101 66.667 0.00 0.00 35.14 6.53
407 2600 3.845259 GACATCCCCAGCCGCGTA 61.845 66.667 4.92 0.00 0.00 4.42
408 2601 4.157120 ACATCCCCAGCCGCGTAC 62.157 66.667 4.92 0.00 0.00 3.67
409 2602 4.155733 CATCCCCAGCCGCGTACA 62.156 66.667 4.92 0.00 0.00 2.90
410 2603 3.161450 ATCCCCAGCCGCGTACAT 61.161 61.111 4.92 0.00 0.00 2.29
412 2605 2.265467 ATCCCCAGCCGCGTACATTT 62.265 55.000 4.92 0.00 0.00 2.32
413 2606 2.043980 CCCCAGCCGCGTACATTTT 61.044 57.895 4.92 0.00 0.00 1.82
414 2607 1.136565 CCCAGCCGCGTACATTTTG 59.863 57.895 4.92 0.00 0.00 2.44
417 2610 0.515127 CAGCCGCGTACATTTTGTGA 59.485 50.000 4.92 0.00 0.00 3.58
418 2611 1.069568 CAGCCGCGTACATTTTGTGAA 60.070 47.619 4.92 0.00 0.00 3.18
419 2612 1.069500 AGCCGCGTACATTTTGTGAAC 60.069 47.619 4.92 0.00 0.00 3.18
420 2613 1.334239 GCCGCGTACATTTTGTGAACA 60.334 47.619 4.92 0.00 0.00 3.18
421 2614 2.667171 GCCGCGTACATTTTGTGAACAT 60.667 45.455 4.92 0.00 0.00 2.71
422 2615 3.560503 CCGCGTACATTTTGTGAACATT 58.439 40.909 4.92 0.00 0.00 2.71
428 2865 5.679355 CGTACATTTTGTGAACATTTGTCGT 59.321 36.000 0.00 0.00 0.00 4.34
430 2867 5.040635 ACATTTTGTGAACATTTGTCGTCC 58.959 37.500 0.00 0.00 0.00 4.79
434 2871 1.003331 GTGAACATTTGTCGTCCGCAA 60.003 47.619 0.00 0.00 0.00 4.85
437 2874 3.243234 TGAACATTTGTCGTCCGCAAATT 60.243 39.130 14.73 7.01 42.54 1.82
438 2875 2.660490 ACATTTGTCGTCCGCAAATTG 58.340 42.857 14.73 13.10 42.54 2.32
454 2891 5.369947 CAAATTGTGCATGATCAATCGTG 57.630 39.130 0.00 7.68 44.61 4.35
477 5060 1.195448 CACAGCACATTCGTTCCAGTC 59.805 52.381 0.00 0.00 0.00 3.51
511 5094 2.462456 GAGCACACTCCTTCATGTCA 57.538 50.000 0.00 0.00 36.90 3.58
512 5095 2.344950 GAGCACACTCCTTCATGTCAG 58.655 52.381 0.00 0.00 36.90 3.51
516 5099 1.277557 ACACTCCTTCATGTCAGGCTC 59.722 52.381 8.42 0.00 0.00 4.70
538 5121 1.334869 CAGCCTTCGTAATCATTGCCC 59.665 52.381 0.00 0.00 0.00 5.36
564 5147 1.210478 GCTACCATCAGGCCTTGAGAA 59.790 52.381 0.00 0.00 39.68 2.87
570 5153 3.750130 CCATCAGGCCTTGAGAATAATCG 59.250 47.826 0.00 0.00 39.68 3.34
592 5175 3.799755 GGTGGTCGATGTTGGCGC 61.800 66.667 0.00 0.00 0.00 6.53
630 5254 1.101049 ACCACAACAACGGAAGGCAG 61.101 55.000 0.00 0.00 0.00 4.85
644 5268 1.220749 GGCAGGGAGACACGCATTA 59.779 57.895 0.00 0.00 0.00 1.90
648 5272 2.699954 CAGGGAGACACGCATTAGTTT 58.300 47.619 0.00 0.00 0.00 2.66
683 5407 4.833478 ACTTATCAGCAAGTCACCTCAT 57.167 40.909 0.00 0.00 33.41 2.90
730 5461 3.047280 GTGTGGCAATCCGCGTGA 61.047 61.111 4.92 1.95 45.79 4.35
744 5475 2.324860 CGCGTGAGACATTGTCAACTA 58.675 47.619 18.57 0.00 34.60 2.24
759 5490 0.175760 AACTATCATCACGCGTGGCT 59.824 50.000 36.41 22.47 0.00 4.75
788 5519 2.301870 ACTGACGTTGATTCCCTGCTTA 59.698 45.455 0.00 0.00 0.00 3.09
803 5534 3.565482 CCTGCTTATCCCTACGTTACGTA 59.435 47.826 16.85 16.85 41.54 3.57
808 5539 1.083489 TCCCTACGTTACGTACACCG 58.917 55.000 13.90 4.33 41.54 4.94
812 5543 0.179235 TACGTTACGTACACCGACGC 60.179 55.000 13.90 0.00 46.87 5.19
814 5545 1.801512 GTTACGTACACCGACGCCC 60.802 63.158 0.00 0.00 46.87 6.13
815 5546 1.971167 TTACGTACACCGACGCCCT 60.971 57.895 0.00 0.00 46.87 5.19
824 5555 0.611714 ACCGACGCCCTGTTTTCTAT 59.388 50.000 0.00 0.00 0.00 1.98
825 5556 1.287425 CCGACGCCCTGTTTTCTATC 58.713 55.000 0.00 0.00 0.00 2.08
826 5557 1.404986 CCGACGCCCTGTTTTCTATCA 60.405 52.381 0.00 0.00 0.00 2.15
827 5558 1.927174 CGACGCCCTGTTTTCTATCAG 59.073 52.381 0.00 0.00 0.00 2.90
828 5559 2.416836 CGACGCCCTGTTTTCTATCAGA 60.417 50.000 0.00 0.00 34.02 3.27
829 5560 3.596214 GACGCCCTGTTTTCTATCAGAA 58.404 45.455 0.00 0.00 34.02 3.02
830 5561 3.600388 ACGCCCTGTTTTCTATCAGAAG 58.400 45.455 0.00 0.00 35.37 2.85
831 5562 3.008049 ACGCCCTGTTTTCTATCAGAAGT 59.992 43.478 0.00 0.00 35.37 3.01
926 5662 4.772624 TCTATATATGACCTGCTTCCGCTT 59.227 41.667 0.00 0.00 36.97 4.68
954 5690 1.417890 ACTCCAGTGGAAGTGTGGAAG 59.582 52.381 14.17 0.26 39.91 3.46
1036 5772 0.740737 ATTTACCAGCGCTTCCATGC 59.259 50.000 7.50 0.00 0.00 4.06
1242 5978 1.153208 GGAGCTGGTGGATGAGCTG 60.153 63.158 0.00 0.00 45.72 4.24
1260 5996 4.500116 GTGGAGGAGGCGCTCGTC 62.500 72.222 7.64 13.42 42.47 4.20
1350 6086 1.133915 TCTTTCGTTGGAGTTTGCCCT 60.134 47.619 0.00 0.00 0.00 5.19
1361 6097 1.202770 AGTTTGCCCTTTGCTACGAGT 60.203 47.619 0.00 0.00 42.00 4.18
1362 6098 1.069227 GTTTGCCCTTTGCTACGAGTG 60.069 52.381 0.00 0.00 42.00 3.51
1363 6099 1.234615 TTGCCCTTTGCTACGAGTGC 61.235 55.000 0.00 0.00 42.00 4.40
1367 6104 1.071605 CCTTTGCTACGAGTGCAGAC 58.928 55.000 0.00 0.00 41.71 3.51
1395 6132 4.159377 GCACAAGCTGCACAGTTATTAA 57.841 40.909 1.02 0.00 46.29 1.40
1396 6133 3.914364 GCACAAGCTGCACAGTTATTAAC 59.086 43.478 1.02 0.00 46.29 2.01
1397 6134 4.151070 CACAAGCTGCACAGTTATTAACG 58.849 43.478 1.02 0.06 36.23 3.18
1399 6136 2.422597 AGCTGCACAGTTATTAACGCA 58.577 42.857 1.02 7.20 36.23 5.24
1400 6137 2.416547 AGCTGCACAGTTATTAACGCAG 59.583 45.455 21.13 21.13 42.51 5.18
1402 6139 3.369756 GCTGCACAGTTATTAACGCAGTA 59.630 43.478 23.75 9.60 45.00 2.74
1404 6141 5.447279 GCTGCACAGTTATTAACGCAGTAAT 60.447 40.000 23.75 0.00 45.00 1.89
1405 6142 6.102006 TGCACAGTTATTAACGCAGTAATC 57.898 37.500 1.03 0.00 45.00 1.75
1407 6144 6.183360 TGCACAGTTATTAACGCAGTAATCTG 60.183 38.462 1.03 0.00 45.00 2.90
1418 6155 3.251479 CAGTAATCTGCTGTGCTACCA 57.749 47.619 0.00 0.00 34.79 3.25
1420 6157 4.194640 CAGTAATCTGCTGTGCTACCATT 58.805 43.478 0.00 0.00 34.79 3.16
1421 6158 4.034858 CAGTAATCTGCTGTGCTACCATTG 59.965 45.833 0.00 0.00 34.79 2.82
1444 6181 1.973281 ATCTGTGGCTGTTTGCGGG 60.973 57.895 0.00 0.00 44.05 6.13
1474 6248 3.454042 TGATTGTGAAACGAGCAATCG 57.546 42.857 10.57 0.00 44.96 3.34
1489 6263 6.250527 ACGAGCAATCGTTTTATTTTGCATAC 59.749 34.615 8.92 0.50 44.63 2.39
1521 6466 5.220758 GCTGGCTTAGTTTTGATAGAAGCTC 60.221 44.000 5.05 0.00 41.75 4.09
1539 6484 2.851008 GCTCGAGAAACCATTTATGCGC 60.851 50.000 18.75 0.00 0.00 6.09
1557 6502 3.188460 TGCGCTTCATAGAAGTTTGGAAC 59.812 43.478 9.73 0.00 0.00 3.62
1604 6551 6.662616 CATAAGATTTGCCTCGTCCATTAAG 58.337 40.000 0.00 0.00 0.00 1.85
1608 6555 5.585047 AGATTTGCCTCGTCCATTAAGTAAC 59.415 40.000 0.00 0.00 0.00 2.50
1611 6558 5.002464 TGCCTCGTCCATTAAGTAACTAC 57.998 43.478 0.00 0.00 0.00 2.73
1612 6559 4.708421 TGCCTCGTCCATTAAGTAACTACT 59.292 41.667 0.00 0.00 38.39 2.57
1613 6560 5.163581 TGCCTCGTCCATTAAGTAACTACTC 60.164 44.000 0.00 0.00 34.99 2.59
1614 6561 5.735638 GCCTCGTCCATTAAGTAACTACTCC 60.736 48.000 0.00 0.00 34.99 3.85
1615 6562 5.221204 CCTCGTCCATTAAGTAACTACTCCC 60.221 48.000 0.00 0.00 34.99 4.30
1616 6563 5.513233 TCGTCCATTAAGTAACTACTCCCT 58.487 41.667 0.00 0.00 34.99 4.20
1617 6564 5.591877 TCGTCCATTAAGTAACTACTCCCTC 59.408 44.000 0.00 0.00 34.99 4.30
1618 6565 5.221204 CGTCCATTAAGTAACTACTCCCTCC 60.221 48.000 0.00 0.00 34.99 4.30
1619 6566 4.891756 TCCATTAAGTAACTACTCCCTCCG 59.108 45.833 0.00 0.00 34.99 4.63
1620 6567 4.648307 CCATTAAGTAACTACTCCCTCCGT 59.352 45.833 0.00 0.00 34.99 4.69
1621 6568 5.221204 CCATTAAGTAACTACTCCCTCCGTC 60.221 48.000 0.00 0.00 34.99 4.79
1622 6569 2.433662 AGTAACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1623 6570 1.064091 AGTAACTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
1624 6571 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1625 6572 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1626 6573 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1627 6574 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1628 6575 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1629 6576 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1630 6577 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1631 6578 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1632 6579 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1633 6580 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1634 6581 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1635 6582 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1636 6583 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1637 6584 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1638 6585 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1639 6586 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1640 6587 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1641 6588 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1642 6589 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1643 6590 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
1644 6591 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
1645 6592 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
1646 6593 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1647 6594 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
1648 6595 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
1649 6596 9.988350 CATAATATAAGAGCGTTTTTGACACTT 57.012 29.630 0.00 0.00 0.00 3.16
1652 6599 6.854496 ATAAGAGCGTTTTTGACACTTACA 57.146 33.333 0.00 0.00 0.00 2.41
1653 6600 4.531659 AGAGCGTTTTTGACACTTACAC 57.468 40.909 0.00 0.00 0.00 2.90
1654 6601 4.189231 AGAGCGTTTTTGACACTTACACT 58.811 39.130 0.00 0.00 0.00 3.55
1655 6602 5.353938 AGAGCGTTTTTGACACTTACACTA 58.646 37.500 0.00 0.00 0.00 2.74
1656 6603 5.462398 AGAGCGTTTTTGACACTTACACTAG 59.538 40.000 0.00 0.00 0.00 2.57
1657 6604 5.114081 AGCGTTTTTGACACTTACACTAGT 58.886 37.500 0.00 0.00 0.00 2.57
1687 6634 8.918202 AAAATGCTCTTATATTATGGAACGGA 57.082 30.769 0.00 0.00 0.00 4.69
1688 6635 8.553459 AAATGCTCTTATATTATGGAACGGAG 57.447 34.615 0.00 0.00 0.00 4.63
1689 6636 6.037786 TGCTCTTATATTATGGAACGGAGG 57.962 41.667 0.00 0.00 0.00 4.30
1690 6637 5.046591 TGCTCTTATATTATGGAACGGAGGG 60.047 44.000 0.00 0.00 0.00 4.30
1691 6638 5.187186 GCTCTTATATTATGGAACGGAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
1692 6639 6.628398 GCTCTTATATTATGGAACGGAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
1693 6640 6.320518 TCTTATATTATGGAACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
1694 6641 7.472741 TCTTATATTATGGAACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
1695 6642 7.614583 TCTTATATTATGGAACGGAGGGAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
1696 6643 3.393426 TTATGGAACGGAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
1697 6644 2.249309 ATGGAACGGAGGGAGTAGTT 57.751 50.000 0.00 0.00 0.00 2.24
1698 6645 2.019807 TGGAACGGAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
1699 6646 3.173953 TGGAACGGAGGGAGTAGTTTA 57.826 47.619 0.00 0.00 0.00 2.01
1700 6647 3.094572 TGGAACGGAGGGAGTAGTTTAG 58.905 50.000 0.00 0.00 0.00 1.85
1701 6648 3.245371 TGGAACGGAGGGAGTAGTTTAGA 60.245 47.826 0.00 0.00 0.00 2.10
1702 6649 3.380954 GGAACGGAGGGAGTAGTTTAGAG 59.619 52.174 0.00 0.00 0.00 2.43
1703 6650 3.015675 ACGGAGGGAGTAGTTTAGAGG 57.984 52.381 0.00 0.00 0.00 3.69
1704 6651 2.311243 ACGGAGGGAGTAGTTTAGAGGT 59.689 50.000 0.00 0.00 0.00 3.85
1705 6652 2.688958 CGGAGGGAGTAGTTTAGAGGTG 59.311 54.545 0.00 0.00 0.00 4.00
1706 6653 3.624205 CGGAGGGAGTAGTTTAGAGGTGA 60.624 52.174 0.00 0.00 0.00 4.02
1707 6654 4.351127 GGAGGGAGTAGTTTAGAGGTGAA 58.649 47.826 0.00 0.00 0.00 3.18
1708 6655 4.403113 GGAGGGAGTAGTTTAGAGGTGAAG 59.597 50.000 0.00 0.00 0.00 3.02
1709 6656 5.013258 AGGGAGTAGTTTAGAGGTGAAGT 57.987 43.478 0.00 0.00 0.00 3.01
1710 6657 5.404395 AGGGAGTAGTTTAGAGGTGAAGTT 58.596 41.667 0.00 0.00 0.00 2.66
1711 6658 5.845065 AGGGAGTAGTTTAGAGGTGAAGTTT 59.155 40.000 0.00 0.00 0.00 2.66
1712 6659 6.329460 AGGGAGTAGTTTAGAGGTGAAGTTTT 59.671 38.462 0.00 0.00 0.00 2.43
1713 6660 6.996879 GGGAGTAGTTTAGAGGTGAAGTTTTT 59.003 38.462 0.00 0.00 0.00 1.94
1742 6689 8.450964 TCTTTTAACATTAGTACAGATGCAAGC 58.549 33.333 0.00 0.00 0.00 4.01
1743 6690 4.864916 AACATTAGTACAGATGCAAGCG 57.135 40.909 0.00 0.00 0.00 4.68
1744 6691 2.609459 ACATTAGTACAGATGCAAGCGC 59.391 45.455 0.00 0.00 39.24 5.92
1745 6692 2.672961 TTAGTACAGATGCAAGCGCT 57.327 45.000 2.64 2.64 39.64 5.92
1746 6693 2.209838 TAGTACAGATGCAAGCGCTC 57.790 50.000 12.06 0.00 39.64 5.03
1747 6694 0.247460 AGTACAGATGCAAGCGCTCA 59.753 50.000 12.06 5.63 39.64 4.26
1748 6695 1.134580 AGTACAGATGCAAGCGCTCAT 60.135 47.619 12.06 11.47 39.64 2.90
1749 6696 2.101415 AGTACAGATGCAAGCGCTCATA 59.899 45.455 12.06 0.00 39.64 2.15
1750 6697 2.251409 ACAGATGCAAGCGCTCATAT 57.749 45.000 12.06 5.22 39.64 1.78
1751 6698 3.391506 ACAGATGCAAGCGCTCATATA 57.608 42.857 12.06 0.00 39.64 0.86
1752 6699 3.062763 ACAGATGCAAGCGCTCATATAC 58.937 45.455 12.06 0.00 39.64 1.47
1753 6700 3.062042 CAGATGCAAGCGCTCATATACA 58.938 45.455 12.06 3.20 39.64 2.29
1754 6701 3.683340 CAGATGCAAGCGCTCATATACAT 59.317 43.478 12.06 8.43 39.64 2.29
1755 6702 4.866486 CAGATGCAAGCGCTCATATACATA 59.134 41.667 12.06 0.00 39.64 2.29
1756 6703 4.867047 AGATGCAAGCGCTCATATACATAC 59.133 41.667 12.06 0.00 39.64 2.39
1757 6704 2.986479 TGCAAGCGCTCATATACATACG 59.014 45.455 12.06 0.00 39.64 3.06
1758 6705 2.222596 GCAAGCGCTCATATACATACGC 60.223 50.000 12.06 0.00 46.20 4.42
1762 6709 4.677683 GCGCTCATATACATACGCATAC 57.322 45.455 0.00 0.00 45.25 2.39
1763 6710 4.102649 GCGCTCATATACATACGCATACA 58.897 43.478 0.00 0.00 45.25 2.29
1764 6711 4.027621 GCGCTCATATACATACGCATACAC 60.028 45.833 0.00 0.00 45.25 2.90
1765 6712 5.332707 CGCTCATATACATACGCATACACT 58.667 41.667 0.00 0.00 0.00 3.55
1766 6713 5.452623 CGCTCATATACATACGCATACACTC 59.547 44.000 0.00 0.00 0.00 3.51
1767 6714 6.322491 GCTCATATACATACGCATACACTCA 58.678 40.000 0.00 0.00 0.00 3.41
1768 6715 6.975197 GCTCATATACATACGCATACACTCAT 59.025 38.462 0.00 0.00 0.00 2.90
1769 6716 7.166638 GCTCATATACATACGCATACACTCATC 59.833 40.741 0.00 0.00 0.00 2.92
1770 6717 8.281212 TCATATACATACGCATACACTCATCT 57.719 34.615 0.00 0.00 0.00 2.90
1771 6718 8.398665 TCATATACATACGCATACACTCATCTC 58.601 37.037 0.00 0.00 0.00 2.75
1772 6719 6.825944 ATACATACGCATACACTCATCTCT 57.174 37.500 0.00 0.00 0.00 3.10
1773 6720 7.923414 ATACATACGCATACACTCATCTCTA 57.077 36.000 0.00 0.00 0.00 2.43
1774 6721 6.825944 ACATACGCATACACTCATCTCTAT 57.174 37.500 0.00 0.00 0.00 1.98
1775 6722 6.847400 ACATACGCATACACTCATCTCTATC 58.153 40.000 0.00 0.00 0.00 2.08
1776 6723 6.431234 ACATACGCATACACTCATCTCTATCA 59.569 38.462 0.00 0.00 0.00 2.15
1777 6724 5.774498 ACGCATACACTCATCTCTATCAA 57.226 39.130 0.00 0.00 0.00 2.57
1778 6725 6.338214 ACGCATACACTCATCTCTATCAAT 57.662 37.500 0.00 0.00 0.00 2.57
1779 6726 6.155136 ACGCATACACTCATCTCTATCAATG 58.845 40.000 0.00 0.00 0.00 2.82
1780 6727 5.061933 CGCATACACTCATCTCTATCAATGC 59.938 44.000 0.00 0.00 34.21 3.56
1781 6728 5.930569 GCATACACTCATCTCTATCAATGCA 59.069 40.000 0.00 0.00 36.79 3.96
1782 6729 6.128607 GCATACACTCATCTCTATCAATGCAC 60.129 42.308 0.00 0.00 36.79 4.57
1783 6730 5.349061 ACACTCATCTCTATCAATGCACA 57.651 39.130 0.00 0.00 0.00 4.57
1784 6731 5.114780 ACACTCATCTCTATCAATGCACAC 58.885 41.667 0.00 0.00 0.00 3.82
1785 6732 5.114081 CACTCATCTCTATCAATGCACACA 58.886 41.667 0.00 0.00 0.00 3.72
1786 6733 5.006455 CACTCATCTCTATCAATGCACACAC 59.994 44.000 0.00 0.00 0.00 3.82
1787 6734 4.114794 TCATCTCTATCAATGCACACACG 58.885 43.478 0.00 0.00 0.00 4.49
1788 6735 2.270923 TCTCTATCAATGCACACACGC 58.729 47.619 0.00 0.00 0.00 5.34
1790 6737 1.731709 TCTATCAATGCACACACGCAC 59.268 47.619 0.00 0.00 46.56 5.34
1791 6738 1.464219 CTATCAATGCACACACGCACA 59.536 47.619 0.00 0.00 46.56 4.57
1792 6739 0.883153 ATCAATGCACACACGCACAT 59.117 45.000 0.00 0.00 46.56 3.21
1793 6740 0.238025 TCAATGCACACACGCACATC 59.762 50.000 0.00 0.00 46.56 3.06
1794 6741 0.730155 CAATGCACACACGCACATCC 60.730 55.000 0.00 0.00 46.56 3.51
1795 6742 0.890542 AATGCACACACGCACATCCT 60.891 50.000 0.00 0.00 46.56 3.24
1796 6743 0.036483 ATGCACACACGCACATCCTA 60.036 50.000 0.00 0.00 46.56 2.94
1797 6744 0.948623 TGCACACACGCACATCCTAC 60.949 55.000 0.00 0.00 36.86 3.18
1798 6745 0.670546 GCACACACGCACATCCTACT 60.671 55.000 0.00 0.00 0.00 2.57
1799 6746 1.795768 CACACACGCACATCCTACTT 58.204 50.000 0.00 0.00 0.00 2.24
1800 6747 1.726791 CACACACGCACATCCTACTTC 59.273 52.381 0.00 0.00 0.00 3.01
1801 6748 1.618837 ACACACGCACATCCTACTTCT 59.381 47.619 0.00 0.00 0.00 2.85
1802 6749 2.823747 ACACACGCACATCCTACTTCTA 59.176 45.455 0.00 0.00 0.00 2.10
1803 6750 3.447586 ACACACGCACATCCTACTTCTAT 59.552 43.478 0.00 0.00 0.00 1.98
1804 6751 3.798878 CACACGCACATCCTACTTCTATG 59.201 47.826 0.00 0.00 0.00 2.23
1805 6752 3.699538 ACACGCACATCCTACTTCTATGA 59.300 43.478 0.00 0.00 0.00 2.15
1806 6753 4.202060 ACACGCACATCCTACTTCTATGAG 60.202 45.833 0.00 0.00 0.00 2.90
1807 6754 3.243569 ACGCACATCCTACTTCTATGAGC 60.244 47.826 0.00 0.00 34.95 4.26
1808 6755 3.243535 CGCACATCCTACTTCTATGAGCA 60.244 47.826 0.00 0.00 37.14 4.26
1809 6756 4.054671 GCACATCCTACTTCTATGAGCAC 58.945 47.826 0.00 0.00 37.23 4.40
1810 6757 4.626042 CACATCCTACTTCTATGAGCACC 58.374 47.826 0.00 0.00 0.00 5.01
1811 6758 4.343526 CACATCCTACTTCTATGAGCACCT 59.656 45.833 0.00 0.00 0.00 4.00
1812 6759 4.586841 ACATCCTACTTCTATGAGCACCTC 59.413 45.833 0.00 0.00 0.00 3.85
1813 6760 3.215151 TCCTACTTCTATGAGCACCTCG 58.785 50.000 0.00 0.00 32.35 4.63
1814 6761 2.952978 CCTACTTCTATGAGCACCTCGT 59.047 50.000 0.00 0.00 32.35 4.18
1815 6762 3.003897 CCTACTTCTATGAGCACCTCGTC 59.996 52.174 0.00 0.00 32.35 4.20
1816 6763 1.751924 ACTTCTATGAGCACCTCGTCC 59.248 52.381 0.00 0.00 32.35 4.79
1817 6764 1.751351 CTTCTATGAGCACCTCGTCCA 59.249 52.381 0.00 0.00 32.35 4.02
1818 6765 2.073252 TCTATGAGCACCTCGTCCAT 57.927 50.000 0.00 0.00 32.35 3.41
1819 6766 2.388735 TCTATGAGCACCTCGTCCATT 58.611 47.619 0.00 0.00 32.35 3.16
1820 6767 3.562182 TCTATGAGCACCTCGTCCATTA 58.438 45.455 0.00 0.00 32.35 1.90
1821 6768 3.958147 TCTATGAGCACCTCGTCCATTAA 59.042 43.478 0.00 0.00 32.35 1.40
1822 6769 2.672961 TGAGCACCTCGTCCATTAAG 57.327 50.000 0.00 0.00 32.35 1.85
1823 6770 1.899814 TGAGCACCTCGTCCATTAAGT 59.100 47.619 0.00 0.00 32.35 2.24
1824 6771 3.093814 TGAGCACCTCGTCCATTAAGTA 58.906 45.455 0.00 0.00 32.35 2.24
1825 6772 3.512329 TGAGCACCTCGTCCATTAAGTAA 59.488 43.478 0.00 0.00 32.35 2.24
1826 6773 4.161565 TGAGCACCTCGTCCATTAAGTAAT 59.838 41.667 0.00 0.00 32.35 1.89
1827 6774 5.099042 AGCACCTCGTCCATTAAGTAATT 57.901 39.130 0.00 0.00 0.00 1.40
1828 6775 5.497474 AGCACCTCGTCCATTAAGTAATTT 58.503 37.500 0.00 0.00 0.00 1.82
1851 6798 8.925161 TTTGTTTAGAGGTGAAGTTTGAAATG 57.075 30.769 0.00 0.00 0.00 2.32
1876 7289 8.327271 TGATTAAGTAGTACTACACTGGAGAGT 58.673 37.037 29.87 7.66 38.24 3.24
1892 7305 8.391106 CACTGGAGAGTACTTATAATTTGTTGC 58.609 37.037 0.00 0.00 0.00 4.17
1895 7308 9.109393 TGGAGAGTACTTATAATTTGTTGCATC 57.891 33.333 0.00 0.00 0.00 3.91
1906 7319 1.353103 GTTGCATCGATGGGCTTCG 59.647 57.895 26.00 0.00 40.46 3.79
1908 7321 0.676466 TTGCATCGATGGGCTTCGTT 60.676 50.000 26.00 0.52 40.03 3.85
1909 7322 0.676466 TGCATCGATGGGCTTCGTTT 60.676 50.000 26.00 0.00 40.03 3.60
1910 7323 0.451783 GCATCGATGGGCTTCGTTTT 59.548 50.000 26.00 0.00 40.03 2.43
1969 7392 5.309543 TGGGGAGAAAGTGAAGAACATCTAA 59.690 40.000 0.00 0.00 30.02 2.10
2029 7456 8.380742 AGAGATTCAGGTTCTAATTAACTCCA 57.619 34.615 0.00 0.00 0.00 3.86
2075 7530 2.156098 GAAATTGTTGGTAGACCCGCA 58.844 47.619 0.00 0.00 35.15 5.69
2109 7564 3.655291 TGCCCAATATAGGAGTATTGCCA 59.345 43.478 2.01 0.00 39.57 4.92
2150 7605 9.860898 TTAGATAGACGATTTGTGATCCATATG 57.139 33.333 0.00 0.00 0.00 1.78
2158 7613 8.031864 ACGATTTGTGATCCATATGTATCTCTC 58.968 37.037 9.42 0.67 0.00 3.20
2238 7745 5.042593 ACAACTAACAACGACATAACGACA 58.957 37.500 0.00 0.00 37.03 4.35
2253 7760 0.037882 CGACAGTGACTGCTGGTGAT 60.038 55.000 13.37 0.00 40.59 3.06
2279 7786 2.499693 ACAAAAGGGGAATATTTGGCCG 59.500 45.455 0.00 0.00 38.14 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.876914 TGCCGCTACTCCTATCAAAAATG 59.123 43.478 0.00 0.00 0.00 2.32
3 4 3.838244 ATGCCGCTACTCCTATCAAAA 57.162 42.857 0.00 0.00 0.00 2.44
5 6 3.832490 ACATATGCCGCTACTCCTATCAA 59.168 43.478 1.58 0.00 0.00 2.57
6 7 3.431415 ACATATGCCGCTACTCCTATCA 58.569 45.455 1.58 0.00 0.00 2.15
7 8 4.177026 CAACATATGCCGCTACTCCTATC 58.823 47.826 1.58 0.00 0.00 2.08
8 9 4.193826 CAACATATGCCGCTACTCCTAT 57.806 45.455 1.58 0.00 0.00 2.57
9 10 3.660501 CAACATATGCCGCTACTCCTA 57.339 47.619 1.58 0.00 0.00 2.94
10 11 2.533266 CAACATATGCCGCTACTCCT 57.467 50.000 1.58 0.00 0.00 3.69
26 27 2.165030 CTGAATCCACCATCTTGGCAAC 59.835 50.000 0.00 0.00 42.67 4.17
27 28 2.041485 TCTGAATCCACCATCTTGGCAA 59.959 45.455 0.00 0.00 42.67 4.52
28 29 1.634973 TCTGAATCCACCATCTTGGCA 59.365 47.619 0.00 0.00 42.67 4.92
29 30 2.019984 GTCTGAATCCACCATCTTGGC 58.980 52.381 0.00 0.00 42.67 4.52
30 31 3.012518 GTGTCTGAATCCACCATCTTGG 58.987 50.000 0.00 0.00 45.02 3.61
32 33 4.581309 ATGTGTCTGAATCCACCATCTT 57.419 40.909 0.00 0.00 0.00 2.40
33 34 4.263639 ACAATGTGTCTGAATCCACCATCT 60.264 41.667 0.00 0.00 0.00 2.90
34 35 4.012374 ACAATGTGTCTGAATCCACCATC 58.988 43.478 0.00 0.00 0.00 3.51
35 36 4.038271 ACAATGTGTCTGAATCCACCAT 57.962 40.909 0.00 0.00 0.00 3.55
37 38 3.569701 ACAACAATGTGTCTGAATCCACC 59.430 43.478 0.00 0.00 38.69 4.61
38 39 4.836125 ACAACAATGTGTCTGAATCCAC 57.164 40.909 0.00 0.00 38.69 4.02
40 41 6.017109 AGTGTTACAACAATGTGTCTGAATCC 60.017 38.462 0.00 0.00 41.21 3.01
41 42 6.959361 AGTGTTACAACAATGTGTCTGAATC 58.041 36.000 0.00 0.00 41.21 2.52
42 43 6.942532 AGTGTTACAACAATGTGTCTGAAT 57.057 33.333 0.00 0.00 41.21 2.57
44 45 6.550843 CAAAGTGTTACAACAATGTGTCTGA 58.449 36.000 4.87 0.00 41.21 3.27
45 46 6.795053 CAAAGTGTTACAACAATGTGTCTG 57.205 37.500 4.87 0.00 41.21 3.51
49 50 5.679355 CCGTACAAAGTGTTACAACAATGTG 59.321 40.000 10.36 10.36 45.15 3.21
50 51 5.354792 ACCGTACAAAGTGTTACAACAATGT 59.645 36.000 11.66 11.66 41.21 2.71
51 52 5.812652 ACCGTACAAAGTGTTACAACAATG 58.187 37.500 0.00 0.20 41.21 2.82
52 53 5.007921 GGACCGTACAAAGTGTTACAACAAT 59.992 40.000 0.00 0.00 41.21 2.71
53 54 4.332268 GGACCGTACAAAGTGTTACAACAA 59.668 41.667 0.00 0.00 41.21 2.83
54 55 3.870419 GGACCGTACAAAGTGTTACAACA 59.130 43.478 0.00 0.00 36.38 3.33
56 57 4.370917 GAGGACCGTACAAAGTGTTACAA 58.629 43.478 0.00 0.00 0.00 2.41
58 59 2.982470 CGAGGACCGTACAAAGTGTTAC 59.018 50.000 0.00 0.00 0.00 2.50
59 60 2.884012 TCGAGGACCGTACAAAGTGTTA 59.116 45.455 0.00 0.00 39.75 2.41
60 61 1.682854 TCGAGGACCGTACAAAGTGTT 59.317 47.619 0.00 0.00 39.75 3.32
61 62 1.268899 CTCGAGGACCGTACAAAGTGT 59.731 52.381 3.91 0.00 39.75 3.55
63 64 1.901591 TCTCGAGGACCGTACAAAGT 58.098 50.000 13.56 0.00 39.75 2.66
64 65 3.505464 ATTCTCGAGGACCGTACAAAG 57.495 47.619 13.56 0.00 39.75 2.77
65 66 5.125900 TGATTATTCTCGAGGACCGTACAAA 59.874 40.000 13.56 0.00 39.75 2.83
66 67 4.641541 TGATTATTCTCGAGGACCGTACAA 59.358 41.667 13.56 0.00 39.75 2.41
67 68 4.201657 TGATTATTCTCGAGGACCGTACA 58.798 43.478 13.56 3.04 39.75 2.90
68 69 4.825546 TGATTATTCTCGAGGACCGTAC 57.174 45.455 13.56 0.40 39.75 3.67
69 70 7.514784 TTATTGATTATTCTCGAGGACCGTA 57.485 36.000 13.56 0.00 39.75 4.02
70 71 4.939052 ATTGATTATTCTCGAGGACCGT 57.061 40.909 13.56 0.00 39.75 4.83
71 72 6.924060 ACTTTATTGATTATTCTCGAGGACCG 59.076 38.462 13.56 0.00 40.25 4.79
72 73 7.171678 CCACTTTATTGATTATTCTCGAGGACC 59.828 40.741 13.56 0.00 0.00 4.46
73 74 7.307455 GCCACTTTATTGATTATTCTCGAGGAC 60.307 40.741 13.56 0.00 0.00 3.85
74 75 6.706270 GCCACTTTATTGATTATTCTCGAGGA 59.294 38.462 13.56 3.44 0.00 3.71
75 76 6.073003 GGCCACTTTATTGATTATTCTCGAGG 60.073 42.308 13.56 0.00 0.00 4.63
76 77 6.346919 CGGCCACTTTATTGATTATTCTCGAG 60.347 42.308 5.93 5.93 0.00 4.04
77 78 5.465390 CGGCCACTTTATTGATTATTCTCGA 59.535 40.000 2.24 0.00 0.00 4.04
78 79 5.236478 ACGGCCACTTTATTGATTATTCTCG 59.764 40.000 2.24 0.00 0.00 4.04
79 80 6.619801 ACGGCCACTTTATTGATTATTCTC 57.380 37.500 2.24 0.00 0.00 2.87
80 81 7.308589 GCATACGGCCACTTTATTGATTATTCT 60.309 37.037 2.24 0.00 36.11 2.40
81 82 6.801862 GCATACGGCCACTTTATTGATTATTC 59.198 38.462 2.24 0.00 36.11 1.75
82 83 6.264292 TGCATACGGCCACTTTATTGATTATT 59.736 34.615 2.24 0.00 43.89 1.40
83 84 5.767665 TGCATACGGCCACTTTATTGATTAT 59.232 36.000 2.24 0.00 43.89 1.28
84 85 5.126779 TGCATACGGCCACTTTATTGATTA 58.873 37.500 2.24 0.00 43.89 1.75
86 87 3.550820 TGCATACGGCCACTTTATTGAT 58.449 40.909 2.24 0.00 43.89 2.57
87 88 2.992593 TGCATACGGCCACTTTATTGA 58.007 42.857 2.24 0.00 43.89 2.57
88 89 3.565482 AGATGCATACGGCCACTTTATTG 59.435 43.478 2.24 0.00 43.89 1.90
90 91 3.403038 GAGATGCATACGGCCACTTTAT 58.597 45.455 2.24 0.00 43.89 1.40
91 92 2.484770 GGAGATGCATACGGCCACTTTA 60.485 50.000 2.24 0.00 43.89 1.85
94 95 1.447643 GGAGATGCATACGGCCACT 59.552 57.895 2.24 0.00 43.89 4.00
95 96 1.598130 GGGAGATGCATACGGCCAC 60.598 63.158 2.24 0.00 43.89 5.01
96 97 2.043604 CTGGGAGATGCATACGGCCA 62.044 60.000 2.24 0.61 43.89 5.36
99 100 2.090400 CATCTGGGAGATGCATACGG 57.910 55.000 0.00 0.00 44.69 4.02
108 109 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
109 110 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
110 111 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
113 114 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
119 120 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
127 128 3.750501 TTAAAAAGGAGGATGACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
150 151 9.252962 CATGCTTCTGAAGTAAAAGATGTTTTT 57.747 29.630 17.97 0.00 37.12 1.94
151 152 8.416329 ACATGCTTCTGAAGTAAAAGATGTTTT 58.584 29.630 17.97 5.82 39.31 2.43
152 153 7.864379 CACATGCTTCTGAAGTAAAAGATGTTT 59.136 33.333 17.97 0.00 0.00 2.83
153 154 7.365741 CACATGCTTCTGAAGTAAAAGATGTT 58.634 34.615 17.97 0.00 0.00 2.71
154 155 6.072286 CCACATGCTTCTGAAGTAAAAGATGT 60.072 38.462 17.97 11.50 0.00 3.06
156 157 5.416952 CCCACATGCTTCTGAAGTAAAAGAT 59.583 40.000 17.97 0.00 0.00 2.40
159 160 4.278170 CACCCACATGCTTCTGAAGTAAAA 59.722 41.667 17.97 3.50 0.00 1.52
160 161 3.820467 CACCCACATGCTTCTGAAGTAAA 59.180 43.478 17.97 5.79 0.00 2.01
228 2421 4.956075 ACACTCTTTTCCAGAACAAACCAT 59.044 37.500 0.00 0.00 0.00 3.55
231 2424 8.807581 CATTTTACACTCTTTTCCAGAACAAAC 58.192 33.333 0.00 0.00 0.00 2.93
239 2432 7.367285 GCATACACATTTTACACTCTTTTCCA 58.633 34.615 0.00 0.00 0.00 3.53
337 2530 5.894298 TCTGGCTAATCAATCTGTGGTAT 57.106 39.130 0.00 0.00 0.00 2.73
341 2534 5.413833 ACTTGTTCTGGCTAATCAATCTGTG 59.586 40.000 0.00 0.00 0.00 3.66
348 2541 2.076100 CGCACTTGTTCTGGCTAATCA 58.924 47.619 0.00 0.00 0.00 2.57
358 2551 2.034053 TGGGTTTGATTCGCACTTGTTC 59.966 45.455 0.00 0.00 0.00 3.18
365 2558 1.605165 GGGGTGGGTTTGATTCGCA 60.605 57.895 0.00 0.00 0.00 5.10
385 2578 2.273449 GGCTGGGGATGTCAGTGG 59.727 66.667 0.00 0.00 34.89 4.00
390 2583 3.845259 TACGCGGCTGGGGATGTC 61.845 66.667 12.47 0.00 0.00 3.06
391 2584 4.157120 GTACGCGGCTGGGGATGT 62.157 66.667 12.47 0.00 0.00 3.06
392 2585 2.940890 AATGTACGCGGCTGGGGATG 62.941 60.000 12.47 0.00 0.00 3.51
394 2587 2.472414 AAAATGTACGCGGCTGGGGA 62.472 55.000 12.47 1.46 0.00 4.81
395 2588 2.043980 AAAATGTACGCGGCTGGGG 61.044 57.895 12.47 2.69 0.00 4.96
396 2589 1.136565 CAAAATGTACGCGGCTGGG 59.863 57.895 12.47 8.27 0.00 4.45
397 2590 0.454285 CACAAAATGTACGCGGCTGG 60.454 55.000 12.47 0.00 0.00 4.85
398 2591 0.515127 TCACAAAATGTACGCGGCTG 59.485 50.000 12.47 0.00 0.00 4.85
399 2592 1.069500 GTTCACAAAATGTACGCGGCT 60.069 47.619 12.47 0.00 0.00 5.52
400 2593 1.323791 GTTCACAAAATGTACGCGGC 58.676 50.000 12.47 3.05 0.00 6.53
401 2594 2.672188 TGTTCACAAAATGTACGCGG 57.328 45.000 12.47 0.00 31.44 6.46
402 2595 4.439449 ACAAATGTTCACAAAATGTACGCG 59.561 37.500 3.53 3.53 31.44 6.01
403 2596 5.385918 CGACAAATGTTCACAAAATGTACGC 60.386 40.000 0.00 0.00 31.44 4.42
404 2597 5.679355 ACGACAAATGTTCACAAAATGTACG 59.321 36.000 0.00 0.00 31.44 3.67
405 2598 6.141685 GGACGACAAATGTTCACAAAATGTAC 59.858 38.462 0.00 0.00 0.00 2.90
406 2599 6.202937 GGACGACAAATGTTCACAAAATGTA 58.797 36.000 0.00 0.00 0.00 2.29
407 2600 5.040635 GGACGACAAATGTTCACAAAATGT 58.959 37.500 0.00 0.00 0.00 2.71
408 2601 4.146271 CGGACGACAAATGTTCACAAAATG 59.854 41.667 0.00 0.00 0.00 2.32
409 2602 4.286910 CGGACGACAAATGTTCACAAAAT 58.713 39.130 0.00 0.00 0.00 1.82
410 2603 3.686128 CGGACGACAAATGTTCACAAAA 58.314 40.909 0.00 0.00 0.00 2.44
412 2605 1.003331 GCGGACGACAAATGTTCACAA 60.003 47.619 0.00 0.00 0.00 3.33
413 2606 0.584396 GCGGACGACAAATGTTCACA 59.416 50.000 0.00 0.00 0.00 3.58
414 2607 0.584396 TGCGGACGACAAATGTTCAC 59.416 50.000 0.00 0.00 0.00 3.18
417 2610 3.049206 CAATTTGCGGACGACAAATGTT 58.951 40.909 19.59 9.50 44.76 2.71
418 2611 2.034053 ACAATTTGCGGACGACAAATGT 59.966 40.909 19.59 16.93 44.76 2.71
419 2612 2.404693 CACAATTTGCGGACGACAAATG 59.595 45.455 19.59 16.55 44.76 2.32
420 2613 2.660490 CACAATTTGCGGACGACAAAT 58.340 42.857 15.84 15.84 46.85 2.32
421 2614 1.862008 GCACAATTTGCGGACGACAAA 60.862 47.619 13.50 13.50 42.79 2.83
422 2615 0.317436 GCACAATTTGCGGACGACAA 60.317 50.000 0.00 0.00 42.79 3.18
434 2871 4.417506 CACACGATTGATCATGCACAATT 58.582 39.130 14.80 2.53 36.94 2.32
437 2874 1.130938 GCACACGATTGATCATGCACA 59.869 47.619 11.00 0.00 32.90 4.57
438 2875 1.130938 TGCACACGATTGATCATGCAC 59.869 47.619 13.91 0.00 35.91 4.57
445 2882 2.931246 TGCTGTGCACACGATTGAT 58.069 47.368 17.42 0.00 31.71 2.57
446 2883 4.453093 TGCTGTGCACACGATTGA 57.547 50.000 17.42 0.00 31.71 2.57
464 2901 2.472695 TGGAAGGACTGGAACGAATG 57.527 50.000 0.00 0.00 0.00 2.67
465 2902 3.502123 TTTGGAAGGACTGGAACGAAT 57.498 42.857 0.00 0.00 0.00 3.34
477 5060 2.793946 CTCCGCGCATTTGGAAGG 59.206 61.111 8.75 0.00 32.89 3.46
516 5099 2.289002 GGCAATGATTACGAAGGCTGAG 59.711 50.000 0.00 0.00 0.00 3.35
525 5108 1.268032 GCGAACAGGGCAATGATTACG 60.268 52.381 0.00 0.00 0.00 3.18
538 5121 0.811616 GGCCTGATGGTAGCGAACAG 60.812 60.000 0.00 0.00 35.27 3.16
564 5147 1.196911 TCGACCACCAACCCGATTAT 58.803 50.000 0.00 0.00 0.00 1.28
570 5153 1.241315 CCAACATCGACCACCAACCC 61.241 60.000 0.00 0.00 0.00 4.11
592 5175 6.623486 TGTGGTGCAGAATTTCAGATTATTG 58.377 36.000 0.00 0.00 0.00 1.90
630 5254 1.737793 CCAAACTAATGCGTGTCTCCC 59.262 52.381 0.00 0.00 0.00 4.30
644 5268 8.786826 TGATAAGTATTTTGTCGATCCAAACT 57.213 30.769 1.02 0.00 34.23 2.66
648 5272 6.345298 TGCTGATAAGTATTTTGTCGATCCA 58.655 36.000 0.00 0.00 0.00 3.41
683 5407 2.649312 AGTCCACATCATCCCTTCCAAA 59.351 45.455 0.00 0.00 0.00 3.28
730 5461 4.568359 GCGTGATGATAGTTGACAATGTCT 59.432 41.667 14.97 0.00 33.15 3.41
744 5475 1.202521 TCATTAGCCACGCGTGATGAT 60.203 47.619 39.10 24.41 0.00 2.45
759 5490 3.932710 GGAATCAACGTCAGTGCTCATTA 59.067 43.478 0.00 0.00 0.00 1.90
772 5503 2.158755 AGGGATAAGCAGGGAATCAACG 60.159 50.000 0.00 0.00 0.00 4.10
778 5509 2.170012 ACGTAGGGATAAGCAGGGAA 57.830 50.000 0.00 0.00 0.00 3.97
788 5519 1.670811 CGGTGTACGTAACGTAGGGAT 59.329 52.381 0.00 0.00 43.06 3.85
803 5534 1.890510 GAAAACAGGGCGTCGGTGT 60.891 57.895 0.00 0.00 0.00 4.16
808 5539 3.247006 TCTGATAGAAAACAGGGCGTC 57.753 47.619 0.00 0.00 35.20 5.19
812 5543 6.467677 TCTGAACTTCTGATAGAAAACAGGG 58.532 40.000 13.69 0.00 33.19 4.45
814 5545 8.279103 GTGTTCTGAACTTCTGATAGAAAACAG 58.721 37.037 20.18 7.96 36.24 3.16
815 5546 7.768582 TGTGTTCTGAACTTCTGATAGAAAACA 59.231 33.333 20.18 9.18 41.07 2.83
824 5555 3.141398 GGCATGTGTTCTGAACTTCTGA 58.859 45.455 20.18 0.00 0.00 3.27
825 5556 3.144506 AGGCATGTGTTCTGAACTTCTG 58.855 45.455 20.18 14.57 0.00 3.02
826 5557 3.498774 AGGCATGTGTTCTGAACTTCT 57.501 42.857 20.18 6.96 0.00 2.85
827 5558 3.057946 GGAAGGCATGTGTTCTGAACTTC 60.058 47.826 20.18 13.14 32.75 3.01
828 5559 2.887152 GGAAGGCATGTGTTCTGAACTT 59.113 45.455 20.18 5.50 0.00 2.66
829 5560 2.158623 TGGAAGGCATGTGTTCTGAACT 60.159 45.455 20.18 0.00 0.00 3.01
830 5561 2.229792 TGGAAGGCATGTGTTCTGAAC 58.770 47.619 13.49 13.49 0.00 3.18
831 5562 2.655090 TGGAAGGCATGTGTTCTGAA 57.345 45.000 8.51 0.00 0.00 3.02
954 5690 0.968405 TTCTTGCTTGATTGGTGGGC 59.032 50.000 0.00 0.00 0.00 5.36
1064 5800 1.425031 CACACGGCGATGACATTGG 59.575 57.895 16.62 0.00 0.00 3.16
1116 5852 3.470567 GGACGCAAGCACGACGAG 61.471 66.667 0.00 0.00 45.62 4.18
1180 5916 2.045242 CCTCTCGTCACCCTCCGA 60.045 66.667 0.00 0.00 0.00 4.55
1350 6086 1.783284 CAGTCTGCACTCGTAGCAAA 58.217 50.000 0.00 0.00 42.17 3.68
1362 6098 1.867615 CTTGTGCTCTGCAGTCTGC 59.132 57.895 18.32 18.32 45.29 4.26
1363 6099 1.867615 GCTTGTGCTCTGCAGTCTG 59.132 57.895 14.67 6.68 40.08 3.51
1399 6136 4.080919 TCAATGGTAGCACAGCAGATTACT 60.081 41.667 0.00 0.00 38.24 2.24
1400 6137 4.191544 TCAATGGTAGCACAGCAGATTAC 58.808 43.478 0.00 0.00 38.24 1.89
1401 6138 4.486125 TCAATGGTAGCACAGCAGATTA 57.514 40.909 0.00 0.00 38.24 1.75
1402 6139 3.354948 TCAATGGTAGCACAGCAGATT 57.645 42.857 0.00 0.00 38.24 2.40
1404 6141 3.197549 TGTATCAATGGTAGCACAGCAGA 59.802 43.478 0.00 0.00 38.24 4.26
1405 6142 3.534554 TGTATCAATGGTAGCACAGCAG 58.465 45.455 0.00 0.00 38.24 4.24
1407 6144 4.212847 CAGATGTATCAATGGTAGCACAGC 59.787 45.833 0.00 0.00 0.00 4.40
1408 6145 5.235831 CACAGATGTATCAATGGTAGCACAG 59.764 44.000 0.00 0.00 0.00 3.66
1409 6146 5.118286 CACAGATGTATCAATGGTAGCACA 58.882 41.667 0.00 0.00 0.00 4.57
1410 6147 4.512944 CCACAGATGTATCAATGGTAGCAC 59.487 45.833 0.00 0.00 32.45 4.40
1412 6149 3.499918 GCCACAGATGTATCAATGGTAGC 59.500 47.826 12.98 0.00 36.79 3.58
1413 6150 4.753610 CAGCCACAGATGTATCAATGGTAG 59.246 45.833 12.98 5.62 36.79 3.18
1418 6155 4.142315 GCAAACAGCCACAGATGTATCAAT 60.142 41.667 0.00 0.00 43.21 2.57
1420 6157 2.749076 GCAAACAGCCACAGATGTATCA 59.251 45.455 0.00 0.00 43.21 2.15
1421 6158 2.223112 CGCAAACAGCCACAGATGTATC 60.223 50.000 0.00 0.00 43.21 2.24
1444 6181 5.868257 TCGTTTCACAATCATTGTATGCTC 58.132 37.500 1.72 0.00 43.23 4.26
1474 6248 5.061684 GCCGGTCAAGTATGCAAAATAAAAC 59.938 40.000 1.90 0.00 0.00 2.43
1489 6263 0.321653 AACTAAGCCAGCCGGTCAAG 60.322 55.000 1.90 0.00 33.28 3.02
1521 6466 3.181511 TGAAGCGCATAAATGGTTTCTCG 60.182 43.478 11.47 0.00 0.00 4.04
1565 6510 7.171337 GCAAATCTTATGCCTCTGTTTGAAAAA 59.829 33.333 0.00 0.00 37.85 1.94
1566 6511 6.646240 GCAAATCTTATGCCTCTGTTTGAAAA 59.354 34.615 0.00 0.00 37.85 2.29
1567 6512 6.158598 GCAAATCTTATGCCTCTGTTTGAAA 58.841 36.000 0.00 0.00 37.85 2.69
1585 6532 5.585047 AGTTACTTAATGGACGAGGCAAATC 59.415 40.000 0.00 0.00 0.00 2.17
1597 6544 4.648307 ACGGAGGGAGTAGTTACTTAATGG 59.352 45.833 0.00 0.00 36.50 3.16
1604 6551 1.341383 TGGGACGGAGGGAGTAGTTAC 60.341 57.143 0.00 0.00 0.00 2.50
1608 6555 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
1611 6558 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1612 6559 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1613 6560 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1614 6561 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1615 6562 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1616 6563 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1617 6564 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1618 6565 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1619 6566 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
1620 6567 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1621 6568 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
1622 6569 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
1635 6582 5.195379 CACTAGTGTAAGTGTCAAAAACGC 58.805 41.667 15.06 0.00 41.63 4.84
1661 6608 9.349713 TCCGTTCCATAATATAAGAGCATTTTT 57.650 29.630 0.00 0.00 0.00 1.94
1662 6609 8.918202 TCCGTTCCATAATATAAGAGCATTTT 57.082 30.769 0.00 0.00 0.00 1.82
1663 6610 7.607991 CCTCCGTTCCATAATATAAGAGCATTT 59.392 37.037 0.00 0.00 0.00 2.32
1664 6611 7.106239 CCTCCGTTCCATAATATAAGAGCATT 58.894 38.462 0.00 0.00 0.00 3.56
1665 6612 6.352222 CCCTCCGTTCCATAATATAAGAGCAT 60.352 42.308 0.00 0.00 0.00 3.79
1666 6613 5.046591 CCCTCCGTTCCATAATATAAGAGCA 60.047 44.000 0.00 0.00 0.00 4.26
1667 6614 5.187186 TCCCTCCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
1668 6615 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1669 6616 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
1670 6617 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
1671 6618 7.243824 ACTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
1672 6619 6.797707 ACTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
1673 6620 5.652324 ACTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
1674 6621 5.070823 ACTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
1675 6622 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
1676 6623 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
1677 6624 3.393426 AACTACTCCCTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
1678 6625 2.249309 AACTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
1679 6626 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
1680 6627 3.359950 TCTAAACTACTCCCTCCGTTCC 58.640 50.000 0.00 0.00 0.00 3.62
1681 6628 3.380954 CCTCTAAACTACTCCCTCCGTTC 59.619 52.174 0.00 0.00 0.00 3.95
1682 6629 3.245550 ACCTCTAAACTACTCCCTCCGTT 60.246 47.826 0.00 0.00 0.00 4.44
1683 6630 2.311243 ACCTCTAAACTACTCCCTCCGT 59.689 50.000 0.00 0.00 0.00 4.69
1684 6631 2.688958 CACCTCTAAACTACTCCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
1685 6632 3.978610 TCACCTCTAAACTACTCCCTCC 58.021 50.000 0.00 0.00 0.00 4.30
1686 6633 5.018149 ACTTCACCTCTAAACTACTCCCTC 58.982 45.833 0.00 0.00 0.00 4.30
1687 6634 5.013258 ACTTCACCTCTAAACTACTCCCT 57.987 43.478 0.00 0.00 0.00 4.20
1688 6635 5.741962 AACTTCACCTCTAAACTACTCCC 57.258 43.478 0.00 0.00 0.00 4.30
1716 6663 8.450964 GCTTGCATCTGTACTAATGTTAAAAGA 58.549 33.333 9.01 0.00 0.00 2.52
1717 6664 7.426456 CGCTTGCATCTGTACTAATGTTAAAAG 59.574 37.037 9.01 8.77 0.00 2.27
1718 6665 7.240674 CGCTTGCATCTGTACTAATGTTAAAA 58.759 34.615 9.01 0.00 0.00 1.52
1719 6666 6.674519 GCGCTTGCATCTGTACTAATGTTAAA 60.675 38.462 0.00 3.19 38.92 1.52
1720 6667 5.220586 GCGCTTGCATCTGTACTAATGTTAA 60.221 40.000 0.00 5.45 38.92 2.01
1721 6668 4.270084 GCGCTTGCATCTGTACTAATGTTA 59.730 41.667 0.00 0.00 38.92 2.41
1722 6669 3.063997 GCGCTTGCATCTGTACTAATGTT 59.936 43.478 0.00 0.00 38.92 2.71
1723 6670 2.609459 GCGCTTGCATCTGTACTAATGT 59.391 45.455 0.00 0.00 38.92 2.71
1724 6671 2.868583 AGCGCTTGCATCTGTACTAATG 59.131 45.455 2.64 0.00 42.66 1.90
1725 6672 3.126831 GAGCGCTTGCATCTGTACTAAT 58.873 45.455 13.26 0.00 42.66 1.73
1726 6673 2.094234 TGAGCGCTTGCATCTGTACTAA 60.094 45.455 13.26 0.00 42.66 2.24
1727 6674 1.476488 TGAGCGCTTGCATCTGTACTA 59.524 47.619 13.26 0.00 42.66 1.82
1728 6675 0.247460 TGAGCGCTTGCATCTGTACT 59.753 50.000 13.26 0.00 42.66 2.73
1729 6676 1.293924 ATGAGCGCTTGCATCTGTAC 58.706 50.000 13.26 0.00 42.66 2.90
1730 6677 2.888834 TATGAGCGCTTGCATCTGTA 57.111 45.000 13.26 0.00 42.66 2.74
1731 6678 2.251409 ATATGAGCGCTTGCATCTGT 57.749 45.000 13.26 0.00 42.66 3.41
1732 6679 3.062042 TGTATATGAGCGCTTGCATCTG 58.938 45.455 13.26 0.00 42.66 2.90
1733 6680 3.391506 TGTATATGAGCGCTTGCATCT 57.608 42.857 13.26 6.79 42.66 2.90
1734 6681 4.259570 CGTATGTATATGAGCGCTTGCATC 60.260 45.833 13.26 0.00 42.66 3.91
1735 6682 3.614176 CGTATGTATATGAGCGCTTGCAT 59.386 43.478 13.26 14.41 42.66 3.96
1736 6683 2.986479 CGTATGTATATGAGCGCTTGCA 59.014 45.455 13.26 6.25 42.66 4.08
1737 6684 2.222596 GCGTATGTATATGAGCGCTTGC 60.223 50.000 13.26 0.00 41.37 4.01
1738 6685 2.986479 TGCGTATGTATATGAGCGCTTG 59.014 45.455 13.26 0.00 44.34 4.01
1739 6686 3.297830 TGCGTATGTATATGAGCGCTT 57.702 42.857 13.26 0.00 44.34 4.68
1740 6687 3.510388 ATGCGTATGTATATGAGCGCT 57.490 42.857 11.27 11.27 44.34 5.92
1741 6688 4.027621 GTGTATGCGTATGTATATGAGCGC 60.028 45.833 0.00 0.00 44.29 5.92
1742 6689 5.332707 AGTGTATGCGTATGTATATGAGCG 58.667 41.667 0.00 0.00 0.00 5.03
1743 6690 6.322491 TGAGTGTATGCGTATGTATATGAGC 58.678 40.000 0.00 0.00 0.00 4.26
1744 6691 8.401709 AGATGAGTGTATGCGTATGTATATGAG 58.598 37.037 0.00 0.00 0.00 2.90
1745 6692 8.281212 AGATGAGTGTATGCGTATGTATATGA 57.719 34.615 0.00 0.00 0.00 2.15
1746 6693 8.401709 AGAGATGAGTGTATGCGTATGTATATG 58.598 37.037 0.00 0.00 0.00 1.78
1747 6694 8.512966 AGAGATGAGTGTATGCGTATGTATAT 57.487 34.615 0.00 0.00 0.00 0.86
1748 6695 7.923414 AGAGATGAGTGTATGCGTATGTATA 57.077 36.000 0.00 0.00 0.00 1.47
1749 6696 6.825944 AGAGATGAGTGTATGCGTATGTAT 57.174 37.500 0.00 0.00 0.00 2.29
1750 6697 7.606456 TGATAGAGATGAGTGTATGCGTATGTA 59.394 37.037 0.00 0.00 0.00 2.29
1751 6698 6.431234 TGATAGAGATGAGTGTATGCGTATGT 59.569 38.462 0.00 0.00 0.00 2.29
1752 6699 6.846350 TGATAGAGATGAGTGTATGCGTATG 58.154 40.000 0.00 0.00 0.00 2.39
1753 6700 7.454260 TTGATAGAGATGAGTGTATGCGTAT 57.546 36.000 0.00 0.00 0.00 3.06
1754 6701 6.877611 TTGATAGAGATGAGTGTATGCGTA 57.122 37.500 0.00 0.00 0.00 4.42
1755 6702 5.774498 TTGATAGAGATGAGTGTATGCGT 57.226 39.130 0.00 0.00 0.00 5.24
1756 6703 5.061933 GCATTGATAGAGATGAGTGTATGCG 59.938 44.000 0.00 0.00 0.00 4.73
1757 6704 5.930569 TGCATTGATAGAGATGAGTGTATGC 59.069 40.000 0.00 0.00 36.21 3.14
1758 6705 6.927381 TGTGCATTGATAGAGATGAGTGTATG 59.073 38.462 0.00 0.00 0.00 2.39
1759 6706 6.927936 GTGTGCATTGATAGAGATGAGTGTAT 59.072 38.462 0.00 0.00 0.00 2.29
1760 6707 6.127366 TGTGTGCATTGATAGAGATGAGTGTA 60.127 38.462 0.00 0.00 0.00 2.90
1761 6708 5.114780 GTGTGCATTGATAGAGATGAGTGT 58.885 41.667 0.00 0.00 0.00 3.55
1762 6709 5.006455 GTGTGTGCATTGATAGAGATGAGTG 59.994 44.000 0.00 0.00 0.00 3.51
1763 6710 5.114780 GTGTGTGCATTGATAGAGATGAGT 58.885 41.667 0.00 0.00 0.00 3.41
1764 6711 4.208666 CGTGTGTGCATTGATAGAGATGAG 59.791 45.833 0.00 0.00 0.00 2.90
1765 6712 4.114794 CGTGTGTGCATTGATAGAGATGA 58.885 43.478 0.00 0.00 0.00 2.92
1766 6713 3.302935 GCGTGTGTGCATTGATAGAGATG 60.303 47.826 0.00 0.00 34.15 2.90
1767 6714 2.868583 GCGTGTGTGCATTGATAGAGAT 59.131 45.455 0.00 0.00 34.15 2.75
1768 6715 2.270923 GCGTGTGTGCATTGATAGAGA 58.729 47.619 0.00 0.00 34.15 3.10
1769 6716 2.001872 TGCGTGTGTGCATTGATAGAG 58.998 47.619 0.00 0.00 40.62 2.43
1770 6717 2.091852 TGCGTGTGTGCATTGATAGA 57.908 45.000 0.00 0.00 40.62 1.98
1778 6725 0.948623 GTAGGATGTGCGTGTGTGCA 60.949 55.000 0.00 0.00 43.95 4.57
1779 6726 0.670546 AGTAGGATGTGCGTGTGTGC 60.671 55.000 0.00 0.00 0.00 4.57
1780 6727 1.726791 GAAGTAGGATGTGCGTGTGTG 59.273 52.381 0.00 0.00 0.00 3.82
1781 6728 1.618837 AGAAGTAGGATGTGCGTGTGT 59.381 47.619 0.00 0.00 0.00 3.72
1782 6729 2.370281 AGAAGTAGGATGTGCGTGTG 57.630 50.000 0.00 0.00 0.00 3.82
1783 6730 3.699538 TCATAGAAGTAGGATGTGCGTGT 59.300 43.478 0.00 0.00 0.00 4.49
1784 6731 4.294232 CTCATAGAAGTAGGATGTGCGTG 58.706 47.826 0.00 0.00 0.00 5.34
1785 6732 3.243569 GCTCATAGAAGTAGGATGTGCGT 60.244 47.826 0.00 0.00 32.41 5.24
1786 6733 3.243535 TGCTCATAGAAGTAGGATGTGCG 60.244 47.826 0.00 0.00 40.98 5.34
1787 6734 4.054671 GTGCTCATAGAAGTAGGATGTGC 58.945 47.826 0.00 0.00 39.41 4.57
1788 6735 4.343526 AGGTGCTCATAGAAGTAGGATGTG 59.656 45.833 0.00 0.00 0.00 3.21
1789 6736 4.551671 AGGTGCTCATAGAAGTAGGATGT 58.448 43.478 0.00 0.00 0.00 3.06
1790 6737 4.320861 CGAGGTGCTCATAGAAGTAGGATG 60.321 50.000 0.00 0.00 0.00 3.51
1791 6738 3.823873 CGAGGTGCTCATAGAAGTAGGAT 59.176 47.826 0.00 0.00 0.00 3.24
1792 6739 3.215151 CGAGGTGCTCATAGAAGTAGGA 58.785 50.000 0.00 0.00 0.00 2.94
1793 6740 2.952978 ACGAGGTGCTCATAGAAGTAGG 59.047 50.000 0.00 0.00 0.00 3.18
1794 6741 3.003897 GGACGAGGTGCTCATAGAAGTAG 59.996 52.174 0.00 0.00 0.00 2.57
1795 6742 2.950309 GGACGAGGTGCTCATAGAAGTA 59.050 50.000 0.00 0.00 0.00 2.24
1796 6743 1.751924 GGACGAGGTGCTCATAGAAGT 59.248 52.381 0.00 0.00 0.00 3.01
1797 6744 1.751351 TGGACGAGGTGCTCATAGAAG 59.249 52.381 0.00 0.00 0.00 2.85
1798 6745 1.847328 TGGACGAGGTGCTCATAGAA 58.153 50.000 0.00 0.00 0.00 2.10
1799 6746 2.073252 ATGGACGAGGTGCTCATAGA 57.927 50.000 0.00 0.00 0.00 1.98
1800 6747 2.898729 AATGGACGAGGTGCTCATAG 57.101 50.000 0.00 0.00 0.00 2.23
1801 6748 3.704566 ACTTAATGGACGAGGTGCTCATA 59.295 43.478 0.00 0.00 0.00 2.15
1802 6749 2.501723 ACTTAATGGACGAGGTGCTCAT 59.498 45.455 0.00 0.00 0.00 2.90
1803 6750 1.899814 ACTTAATGGACGAGGTGCTCA 59.100 47.619 0.00 0.00 0.00 4.26
1804 6751 2.674796 ACTTAATGGACGAGGTGCTC 57.325 50.000 0.00 0.00 0.00 4.26
1805 6752 4.755266 ATTACTTAATGGACGAGGTGCT 57.245 40.909 0.00 0.00 0.00 4.40
1806 6753 5.123344 ACAAATTACTTAATGGACGAGGTGC 59.877 40.000 0.00 0.00 0.00 5.01
1807 6754 6.737254 ACAAATTACTTAATGGACGAGGTG 57.263 37.500 0.00 0.00 0.00 4.00
1808 6755 7.754851 AAACAAATTACTTAATGGACGAGGT 57.245 32.000 0.00 0.00 0.00 3.85
1809 6756 9.158233 TCTAAACAAATTACTTAATGGACGAGG 57.842 33.333 0.00 0.00 0.00 4.63
1811 6758 9.158233 CCTCTAAACAAATTACTTAATGGACGA 57.842 33.333 0.00 0.00 0.00 4.20
1812 6759 8.943002 ACCTCTAAACAAATTACTTAATGGACG 58.057 33.333 0.00 0.00 0.00 4.79
1821 6768 9.403583 TCAAACTTCACCTCTAAACAAATTACT 57.596 29.630 0.00 0.00 0.00 2.24
1825 6772 9.533253 CATTTCAAACTTCACCTCTAAACAAAT 57.467 29.630 0.00 0.00 0.00 2.32
1826 6773 8.744652 TCATTTCAAACTTCACCTCTAAACAAA 58.255 29.630 0.00 0.00 0.00 2.83
1827 6774 8.287439 TCATTTCAAACTTCACCTCTAAACAA 57.713 30.769 0.00 0.00 0.00 2.83
1828 6775 7.873719 TCATTTCAAACTTCACCTCTAAACA 57.126 32.000 0.00 0.00 0.00 2.83
1851 6798 8.735692 ACTCTCCAGTGTAGTACTACTTAATC 57.264 38.462 28.56 15.67 37.60 1.75
1868 6815 8.492673 TGCAACAAATTATAAGTACTCTCCAG 57.507 34.615 0.00 0.00 0.00 3.86
1870 6817 8.276325 CGATGCAACAAATTATAAGTACTCTCC 58.724 37.037 0.00 0.00 0.00 3.71
1876 7289 7.521423 GCCCATCGATGCAACAAATTATAAGTA 60.521 37.037 20.25 0.00 0.00 2.24
1879 7292 5.301551 AGCCCATCGATGCAACAAATTATAA 59.698 36.000 20.25 0.00 0.00 0.98
1883 7296 1.826720 AGCCCATCGATGCAACAAATT 59.173 42.857 20.25 0.00 0.00 1.82
1886 7299 0.810648 GAAGCCCATCGATGCAACAA 59.189 50.000 20.25 0.00 0.00 2.83
1892 7305 2.919666 AAAAACGAAGCCCATCGATG 57.080 45.000 18.76 18.76 45.48 3.84
1921 7334 4.381411 AGGTGTGTCAGCTTAGTTTCTTC 58.619 43.478 0.00 0.00 39.27 2.87
1931 7344 2.219875 CCCCAGAGGTGTGTCAGCT 61.220 63.158 1.03 1.03 45.28 4.24
1990 7413 7.836842 ACCTGAATCTCTAGTTCTCTTTCTTC 58.163 38.462 0.00 0.00 0.00 2.87
2029 7456 3.834231 ACCTGGCATAATTTCAGCTTGTT 59.166 39.130 0.00 0.00 0.00 2.83
2075 7530 4.864704 ATATTGGGCAAGTTGTTTTCGT 57.135 36.364 4.48 0.00 0.00 3.85
2142 7597 6.676990 TTGTGCTGAGAGATACATATGGAT 57.323 37.500 0.00 0.00 0.00 3.41
2186 7692 3.414700 GTTGGTGCTCCTCGTGCG 61.415 66.667 6.34 0.00 34.23 5.34
2238 7745 1.002868 GCCATCACCAGCAGTCACT 60.003 57.895 0.00 0.00 0.00 3.41
2253 7760 4.263243 CCAAATATTCCCCTTTTGTTGCCA 60.263 41.667 0.00 0.00 0.00 4.92
2279 7786 5.576774 GCATTAGTTTAGTCCCAAAATGCAC 59.423 40.000 11.15 0.00 44.33 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.