AutoCloner

Multiple sequence alignment - TraesCS7A01G441800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G441800	chr7A	100.000	3152	0	0	1	3152	635683256	635686407	0.000000e+00	5821.0
1	TraesCS7A01G441800	chr7A	95.745	47	1	1	608	654	541390233	541390278	1.210000e-09	75.0
2	TraesCS7A01G441800	chr7D	94.304	2721	83	15	484	3152	550265607	550268307	0.000000e+00	4100.0
3	TraesCS7A01G441800	chr7D	84.000	425	38	7	3	405	550265155	550265571	6.380000e-102	381.0
4	TraesCS7A01G441800	chr7B	95.424	2535	71	15	654	3152	594954701	594957226	0.000000e+00	3997.0
5	TraesCS7A01G441800	chr7B	90.476	315	23	2	1	309	594953834	594954147	2.930000e-110	409.0
6	TraesCS7A01G441800	chr7B	95.270	148	7	0	484	631	594954501	594954648	5.260000e-58	235.0
7	TraesCS7A01G441800	chr7B	100.000	38	0	0	402	439	594954480	594954517	1.570000e-08	71.3
8	TraesCS7A01G441800	chr4A	92.144	1553	104	11	844	2389	595422718	595424259	0.000000e+00	2176.0
9	TraesCS7A01G441800	chr4A	86.869	297	32	5	2602	2892	595424322	595424617	3.030000e-85	326.0
10	TraesCS7A01G441800	chr4A	100.000	34	0	0	621	654	538168958	538168991	2.620000e-06	63.9
11	TraesCS7A01G441800	chr4B	92.538	1434	93	8	959	2389	14013164	14014586	0.000000e+00	2043.0
12	TraesCS7A01G441800	chr4B	78.832	137	22	6	1	130	14012327	14012463	5.600000e-13	86.1
13	TraesCS7A01G441800	chr4D	91.565	1470	106	9	923	2387	7893183	7891727	0.000000e+00	2012.0
14	TraesCS7A01G441800	chr4D	79.085	612	70	35	2587	3143	7891672	7891064	4.970000e-98	368.0
15	TraesCS7A01G441800	chr4D	92.727	55	2	2	432	486	47511191	47511139	9.370000e-11	78.7
16	TraesCS7A01G441800	chr3A	100.000	47	0	0	436	482	446317993	446317947	1.560000e-13	87.9
17	TraesCS7A01G441800	chr6D	100.000	46	0	0	437	482	454655680	454655725	5.600000e-13	86.1
18	TraesCS7A01G441800	chr5B	100.000	46	0	0	437	482	668274586	668274631	5.600000e-13	86.1
19	TraesCS7A01G441800	chr5B	96.000	50	2	0	433	482	440281768	440281817	7.250000e-12	82.4
20	TraesCS7A01G441800	chr1D	96.078	51	2	0	433	483	488481847	488481897	2.010000e-12	84.2
21	TraesCS7A01G441800	chr1D	86.301	73	8	2	411	482	326287701	326287772	9.370000e-11	78.7
22	TraesCS7A01G441800	chr5D	100.000	44	0	0	439	482	373170071	373170114	7.250000e-12	82.4
23	TraesCS7A01G441800	chr5D	92.683	41	3	0	615	655	342861889	342861849	3.400000e-05	60.2
24	TraesCS7A01G441800	chr1B	97.872	47	1	0	435	481	671563331	671563377	7.250000e-12	82.4
25	TraesCS7A01G441800	chr1B	100.000	34	0	0	621	654	137153012	137152979	2.620000e-06	63.9
26	TraesCS7A01G441800	chr3B	93.182	44	1	2	618	660	555543521	555543479	2.620000e-06	63.9
27	TraesCS7A01G441800	chr5A	97.222	36	1	0	619	654	3295017	3294982	9.440000e-06	62.1
28	TraesCS7A01G441800	chr2D	97.297	37	0	1	619	655	584774108	584774143	9.440000e-06	62.1
29	TraesCS7A01G441800	chr2B	94.872	39	2	0	616	654	746033034	746033072	9.440000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G441800	chr7A	635683256	635686407	3151	False	5821.000	5821	100.0000	1	3152	1	chr7A.!!$F2	3151
1	TraesCS7A01G441800	chr7D	550265155	550268307	3152	False	2240.500	4100	89.1520	3	3152	2	chr7D.!!$F1	3149
2	TraesCS7A01G441800	chr7B	594953834	594957226	3392	False	1178.075	3997	95.2925	1	3152	4	chr7B.!!$F1	3151
3	TraesCS7A01G441800	chr4A	595422718	595424617	1899	False	1251.000	2176	89.5065	844	2892	2	chr4A.!!$F2	2048
4	TraesCS7A01G441800	chr4B	14012327	14014586	2259	False	1064.550	2043	85.6850	1	2389	2	chr4B.!!$F1	2388
5	TraesCS7A01G441800	chr4D	7891064	7893183	2119	True	1190.000	2012	85.3250	923	3143	2	chr4D.!!$R2	2220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
520	798	0.391528	GGGCAATGCAAAAGCGGAAT	60.392	50.000	7.79	0.0	0.0	3.01	F
1413	1784	2.019156	GCACAGGAGCTAATGGAACCC	61.019	57.143	2.95	0.0	0.0	4.11	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1573	1944	0.742281	CACAGATGGTCCAAGCCTCG	60.742	60.000	0.0	0.0	0.00	4.63	R
2626	3039	3.081061	ACAAAGCGGAATTGATACTGCA	58.919	40.909	0.0	0.0	40.39	4.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	56	1.139058	CCAGTCCTCGTTCCCCATAAG	59.861	57.143	0.00	0.00	0.00	1.73
140	156	1.215647	GTCTCGCCGTCATTGTCCT	59.784	57.895	0.00	0.00	0.00	3.85
184	200	0.535335	TGACGTCCTAATGGCCTGAC	59.465	55.000	14.12	2.13	0.00	3.51
186	202	0.617820	ACGTCCTAATGGCCTGACCT	60.618	55.000	3.32	0.00	40.22	3.85
190	206	0.830648	CCTAATGGCCTGACCTCGAA	59.169	55.000	3.32	0.00	40.22	3.71
220	242	1.714414	GCATCGAGCTCAACTGCTG	59.286	57.895	15.40	0.12	44.17	4.41
311	349	4.217334	TCAGTTCAGTCTTCAGAGCTAGTG	59.783	45.833	0.00	0.00	0.00	2.74
348	501	7.496920	TGCAATGAGTCTAGTGAAGGATAAATG	59.503	37.037	0.00	0.00	0.00	2.32
439	717	7.168219	TGATGTAGGAGTAGTTGATGCTTTTT	58.832	34.615	0.00	0.00	0.00	1.94
467	745	9.823647	TTTTGAATTAGTTTGAATTGCTTACCA	57.176	25.926	0.00	0.00	0.00	3.25
468	746	8.810652	TTGAATTAGTTTGAATTGCTTACCAC	57.189	30.769	0.00	0.00	0.00	4.16
469	747	7.946207	TGAATTAGTTTGAATTGCTTACCACA	58.054	30.769	0.00	0.00	0.00	4.17
470	748	8.584157	TGAATTAGTTTGAATTGCTTACCACAT	58.416	29.630	0.00	0.00	0.00	3.21
474	752	7.466746	AGTTTGAATTGCTTACCACATATGT	57.533	32.000	1.41	1.41	0.00	2.29
475	753	7.538575	AGTTTGAATTGCTTACCACATATGTC	58.461	34.615	5.07	0.00	0.00	3.06
476	754	7.176515	AGTTTGAATTGCTTACCACATATGTCA	59.823	33.333	5.07	0.00	0.00	3.58
477	755	6.435430	TGAATTGCTTACCACATATGTCAC	57.565	37.500	5.07	0.00	0.00	3.67
478	756	5.064579	TGAATTGCTTACCACATATGTCACG	59.935	40.000	5.07	0.00	0.00	4.35
479	757	3.603158	TGCTTACCACATATGTCACGT	57.397	42.857	5.07	5.26	0.00	4.49
480	758	3.258228	TGCTTACCACATATGTCACGTG	58.742	45.455	9.94	9.94	0.00	4.49
486	764	3.510388	CACATATGTCACGTGGAGAGT	57.490	47.619	17.00	4.67	0.00	3.24
487	765	4.632538	CACATATGTCACGTGGAGAGTA	57.367	45.455	17.00	2.85	0.00	2.59
488	766	4.602006	CACATATGTCACGTGGAGAGTAG	58.398	47.826	17.00	3.58	0.00	2.57
489	767	4.096532	CACATATGTCACGTGGAGAGTAGT	59.903	45.833	17.00	4.22	0.00	2.73
490	768	4.705507	ACATATGTCACGTGGAGAGTAGTT	59.294	41.667	17.00	0.00	0.00	2.24
491	769	3.577649	ATGTCACGTGGAGAGTAGTTG	57.422	47.619	17.00	0.00	0.00	3.16
492	770	2.578786	TGTCACGTGGAGAGTAGTTGA	58.421	47.619	17.00	0.00	0.00	3.18
493	771	3.154710	TGTCACGTGGAGAGTAGTTGAT	58.845	45.455	17.00	0.00	0.00	2.57
494	772	3.057526	TGTCACGTGGAGAGTAGTTGATG	60.058	47.826	17.00	0.00	0.00	3.07
495	773	2.094700	TCACGTGGAGAGTAGTTGATGC	60.095	50.000	17.00	0.00	0.00	3.91
496	774	2.094494	CACGTGGAGAGTAGTTGATGCT	60.094	50.000	7.95	0.00	0.00	3.79
497	775	2.563179	ACGTGGAGAGTAGTTGATGCTT	59.437	45.455	0.00	0.00	0.00	3.91
498	776	3.006967	ACGTGGAGAGTAGTTGATGCTTT	59.993	43.478	0.00	0.00	0.00	3.51
499	777	3.997021	CGTGGAGAGTAGTTGATGCTTTT	59.003	43.478	0.00	0.00	0.00	2.27
520	798	0.391528	GGGCAATGCAAAAGCGGAAT	60.392	50.000	7.79	0.00	0.00	3.01
526	804	2.987413	TGCAAAAGCGGAATGTAGTG	57.013	45.000	0.00	0.00	0.00	2.74
791	1132	2.738695	GCTCTGCTTCTGCTGCGAC	61.739	63.158	0.00	0.00	40.48	5.19
833	1184	4.736126	TTGTTGAGACTTGAGACACAGA	57.264	40.909	0.00	0.00	0.00	3.41
856	1223	4.459337	ACTCTTGGTATTAGTTGCAAAGCC	59.541	41.667	0.00	0.00	0.00	4.35
935	1306	9.952188	GAAGTACAACTTTCTGCTTCTTTATTT	57.048	29.630	0.00	0.00	38.80	1.40
1413	1784	2.019156	GCACAGGAGCTAATGGAACCC	61.019	57.143	2.95	0.00	0.00	4.11
1551	1922	5.678955	AGTTGATTCCTAGTTACCCTGAC	57.321	43.478	0.00	0.00	0.00	3.51
1681	2052	5.952387	TCCAAATGGATTATAGAGGGGTTG	58.048	41.667	0.00	0.00	39.78	3.77
1789	2160	1.649321	AGTCAGGTGGCAGAAGATGA	58.351	50.000	0.00	0.00	0.00	2.92
2154	2525	2.472029	ACTCCACTGGCAGTATAGCTT	58.528	47.619	21.59	3.01	34.17	3.74
2300	2675	1.599542	GGATGTGTCTTGCGCCTTATC	59.400	52.381	4.18	0.00	0.00	1.75
2335	2710	7.882179	AGATAAAACTGTAAACACCAACATCC	58.118	34.615	0.00	0.00	0.00	3.51
2375	2751	1.272092	CCCCAGGAATCAAGTTGCAGA	60.272	52.381	0.00	0.00	0.00	4.26
2400	2776	3.945921	AGCTGATGAGACATCCATGTTTG	59.054	43.478	8.87	0.00	41.95	2.93
2440	2821	3.009033	CAGTTGGAATGTAGGGGTTGAGA	59.991	47.826	0.00	0.00	0.00	3.27
2442	2823	2.196595	TGGAATGTAGGGGTTGAGAGG	58.803	52.381	0.00	0.00	0.00	3.69
2443	2824	2.225779	TGGAATGTAGGGGTTGAGAGGA	60.226	50.000	0.00	0.00	0.00	3.71
2449	2839	4.695606	TGTAGGGGTTGAGAGGATTAAGT	58.304	43.478	0.00	0.00	0.00	2.24
2614	3024	2.355756	AGTTGTGCAGCTTATAATGCCG	59.644	45.455	8.26	0.00	41.85	5.69
2871	3290	5.189736	TCATACCACTAGATGCTCTTGGTTT	59.810	40.000	12.06	5.23	38.29	3.27
2872	3291	6.382859	TCATACCACTAGATGCTCTTGGTTTA	59.617	38.462	12.06	1.10	38.29	2.01
2873	3292	4.833390	ACCACTAGATGCTCTTGGTTTAC	58.167	43.478	0.00	0.00	34.79	2.01
2874	3293	4.192317	CCACTAGATGCTCTTGGTTTACC	58.808	47.826	0.00	0.00	0.00	2.85
2892	3311	6.254804	GGTTTACCGGATGTTTTAAATGCATC	59.745	38.462	9.46	17.84	38.51	3.91
2951	3394	6.482641	AGCTGCATCTCATCAGTACTTATTTG	59.517	38.462	1.02	0.00	33.09	2.32
3094	3559	1.089920	GCGATTGTGTCCTCATGCTT	58.910	50.000	0.00	0.00	0.00	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	31	3.400054	GGGAACGAGGACTGGGGG	61.400	72.222	0.00	0.00	0.00	5.40
52	56	1.679305	TGAGAGAGTGAGGACGGCC	60.679	63.158	0.00	0.00	0.00	6.13
154	170	3.052082	GACGTCACCGACCGGAGA	61.052	66.667	16.07	10.06	38.96	3.71
161	177	1.514087	GCCATTAGGACGTCACCGA	59.486	57.895	18.91	0.00	36.89	4.69
174	190	1.079127	CGTTCGAGGTCAGGCCATT	60.079	57.895	5.01	0.00	40.61	3.16
184	200	3.466879	GGCGTTTACCGTTCGAGG	58.533	61.111	0.00	0.00	39.32	4.63
220	242	6.527057	ACAATCACACTAGTTAGTACCTCC	57.473	41.667	0.00	0.00	34.13	4.30
311	349	7.010923	CACTAGACTCATTGCAGAAAATACTCC	59.989	40.741	0.00	0.00	0.00	3.85
361	514	8.713708	AGCTATAGTGTATAAGTTGATCACCT	57.286	34.615	0.00	0.00	0.00	4.00
373	632	7.655521	AAGTGTCACCAAGCTATAGTGTATA	57.344	36.000	0.84	0.00	33.21	1.47
376	635	4.891992	AAGTGTCACCAAGCTATAGTGT	57.108	40.909	0.84	0.00	33.21	3.55
377	636	7.041721	TCAATAAGTGTCACCAAGCTATAGTG	58.958	38.462	0.84	4.70	0.00	2.74
383	642	3.077359	GCTCAATAAGTGTCACCAAGCT	58.923	45.455	0.00	0.00	0.00	3.74
441	719	9.823647	TGGTAAGCAATTCAAACTAATTCAAAA	57.176	25.926	0.00	0.00	0.00	2.44
442	720	9.255304	GTGGTAAGCAATTCAAACTAATTCAAA	57.745	29.630	0.00	0.00	0.00	2.69
443	721	8.417106	TGTGGTAAGCAATTCAAACTAATTCAA	58.583	29.630	0.00	0.00	0.00	2.69
444	722	7.946207	TGTGGTAAGCAATTCAAACTAATTCA	58.054	30.769	0.00	0.00	0.00	2.57
445	723	8.986477	ATGTGGTAAGCAATTCAAACTAATTC	57.014	30.769	0.00	0.00	0.00	2.17
448	726	9.019656	ACATATGTGGTAAGCAATTCAAACTAA	57.980	29.630	7.78	0.00	0.00	2.24
449	727	8.574251	ACATATGTGGTAAGCAATTCAAACTA	57.426	30.769	7.78	0.00	0.00	2.24
450	728	7.176515	TGACATATGTGGTAAGCAATTCAAACT	59.823	33.333	14.43	0.00	0.00	2.66
451	729	7.273381	GTGACATATGTGGTAAGCAATTCAAAC	59.727	37.037	14.43	0.00	0.00	2.93
452	730	7.312154	GTGACATATGTGGTAAGCAATTCAAA	58.688	34.615	14.43	0.00	0.00	2.69
453	731	6.403092	CGTGACATATGTGGTAAGCAATTCAA	60.403	38.462	14.43	0.00	0.00	2.69
454	732	5.064579	CGTGACATATGTGGTAAGCAATTCA	59.935	40.000	14.43	0.00	0.00	2.57
455	733	5.064707	ACGTGACATATGTGGTAAGCAATTC	59.935	40.000	14.43	0.00	0.00	2.17
456	734	4.941263	ACGTGACATATGTGGTAAGCAATT	59.059	37.500	14.43	0.00	0.00	2.32
457	735	4.332543	CACGTGACATATGTGGTAAGCAAT	59.667	41.667	14.43	0.00	41.62	3.56
458	736	3.682377	CACGTGACATATGTGGTAAGCAA	59.318	43.478	14.43	0.00	41.62	3.91
459	737	3.258228	CACGTGACATATGTGGTAAGCA	58.742	45.455	14.43	0.37	41.62	3.91
460	738	3.925688	CACGTGACATATGTGGTAAGC	57.074	47.619	14.43	0.00	41.62	3.09
466	744	3.510388	ACTCTCCACGTGACATATGTG	57.490	47.619	19.30	1.19	44.31	3.21
467	745	4.270834	ACTACTCTCCACGTGACATATGT	58.729	43.478	19.30	8.43	0.00	2.29
468	746	4.902443	ACTACTCTCCACGTGACATATG	57.098	45.455	19.30	0.00	0.00	1.78
469	747	4.948004	TCAACTACTCTCCACGTGACATAT	59.052	41.667	19.30	1.77	0.00	1.78
470	748	4.329392	TCAACTACTCTCCACGTGACATA	58.671	43.478	19.30	1.12	0.00	2.29
471	749	3.154710	TCAACTACTCTCCACGTGACAT	58.845	45.455	19.30	0.00	0.00	3.06
472	750	2.578786	TCAACTACTCTCCACGTGACA	58.421	47.619	19.30	1.55	0.00	3.58
473	751	3.502920	CATCAACTACTCTCCACGTGAC	58.497	50.000	19.30	0.00	0.00	3.67
474	752	2.094700	GCATCAACTACTCTCCACGTGA	60.095	50.000	19.30	2.03	0.00	4.35
475	753	2.094494	AGCATCAACTACTCTCCACGTG	60.094	50.000	9.08	9.08	0.00	4.49
476	754	2.171840	AGCATCAACTACTCTCCACGT	58.828	47.619	0.00	0.00	0.00	4.49
477	755	2.949451	AGCATCAACTACTCTCCACG	57.051	50.000	0.00	0.00	0.00	4.94
478	756	5.582665	CCTAAAAGCATCAACTACTCTCCAC	59.417	44.000	0.00	0.00	0.00	4.02
479	757	5.338381	CCCTAAAAGCATCAACTACTCTCCA	60.338	44.000	0.00	0.00	0.00	3.86
480	758	5.119694	CCCTAAAAGCATCAACTACTCTCC	58.880	45.833	0.00	0.00	0.00	3.71
481	759	4.572795	GCCCTAAAAGCATCAACTACTCTC	59.427	45.833	0.00	0.00	0.00	3.20
482	760	4.019321	TGCCCTAAAAGCATCAACTACTCT	60.019	41.667	0.00	0.00	34.69	3.24
483	761	4.261801	TGCCCTAAAAGCATCAACTACTC	58.738	43.478	0.00	0.00	34.69	2.59
484	762	4.301072	TGCCCTAAAAGCATCAACTACT	57.699	40.909	0.00	0.00	34.69	2.57
485	763	5.343249	CATTGCCCTAAAAGCATCAACTAC	58.657	41.667	0.00	0.00	40.59	2.73
486	764	4.142182	GCATTGCCCTAAAAGCATCAACTA	60.142	41.667	0.00	0.00	40.59	2.24
487	765	3.368739	GCATTGCCCTAAAAGCATCAACT	60.369	43.478	0.00	0.00	40.59	3.16
488	766	2.931969	GCATTGCCCTAAAAGCATCAAC	59.068	45.455	0.00	0.00	40.59	3.18
489	767	2.566279	TGCATTGCCCTAAAAGCATCAA	59.434	40.909	6.12	0.00	40.59	2.57
490	768	2.177734	TGCATTGCCCTAAAAGCATCA	58.822	42.857	6.12	0.00	40.59	3.07
491	769	2.965572	TGCATTGCCCTAAAAGCATC	57.034	45.000	6.12	0.00	40.59	3.91
492	770	3.699411	TTTGCATTGCCCTAAAAGCAT	57.301	38.095	6.12	0.00	40.59	3.79
493	771	3.401182	CTTTTGCATTGCCCTAAAAGCA	58.599	40.909	15.49	0.00	38.81	3.91
687	1026	9.010029	ACATAATACAAAATTGACCGAAAGAGT	57.990	29.630	0.00	0.00	0.00	3.24
748	1089	0.400594	GCAAGTTACAGGGTCAGGGT	59.599	55.000	0.00	0.00	0.00	4.34
749	1090	0.693049	AGCAAGTTACAGGGTCAGGG	59.307	55.000	0.00	0.00	0.00	4.45
750	1091	1.625818	AGAGCAAGTTACAGGGTCAGG	59.374	52.381	7.87	0.00	0.00	3.86
751	1092	3.070018	CAAGAGCAAGTTACAGGGTCAG	58.930	50.000	7.87	0.00	0.00	3.51
752	1093	2.224523	CCAAGAGCAAGTTACAGGGTCA	60.225	50.000	7.87	0.00	0.00	4.02
753	1094	2.427506	CCAAGAGCAAGTTACAGGGTC	58.572	52.381	0.00	0.00	0.00	4.46
791	1132	5.156355	CAATTCCCATTTCAGAACAACTCG	58.844	41.667	0.00	0.00	0.00	4.18
833	1184	4.459337	GGCTTTGCAACTAATACCAAGAGT	59.541	41.667	0.00	0.00	0.00	3.24
935	1306	1.159285	CCAAGTGATCAAGAGCGCAA	58.841	50.000	11.47	0.00	0.00	4.85
1350	1721	4.917906	ATTTCTGGCCTTCTCAGTAAGT	57.082	40.909	3.32	0.00	34.15	2.24
1413	1784	6.038050	GCTTCCTCAGATTTCTTACCAAGATG	59.962	42.308	0.00	0.00	37.38	2.90
1573	1944	0.742281	CACAGATGGTCCAAGCCTCG	60.742	60.000	0.00	0.00	0.00	4.63
1681	2052	6.128138	ACCCAGTATATTCCCATCTTTAGC	57.872	41.667	0.00	0.00	0.00	3.09
1789	2160	7.038799	AGCATTCAAATAAGGTGAAGGAAATGT	60.039	33.333	3.24	0.00	38.69	2.71
2154	2525	8.668353	GCTTCTCATGTAAATCAATAACACTCA	58.332	33.333	0.00	0.00	0.00	3.41
2300	2675	9.944663	TGTTTACAGTTTTATCTTTAACAGCTG	57.055	29.630	13.48	13.48	0.00	4.24
2335	2710	5.598005	TGGGGTGCTTCATATTTAAAGATGG	59.402	40.000	19.80	8.40	0.00	3.51
2375	2751	3.391626	ACATGGATGTCTCATCAGCTGAT	59.608	43.478	23.75	23.75	35.87	2.90
2400	2776	4.273148	ACTGAACTTGTGACCTCCATAC	57.727	45.455	0.00	0.00	0.00	2.39
2440	2821	5.716228	TCAAACCAATCATGCACTTAATCCT	59.284	36.000	0.00	0.00	0.00	3.24
2442	2823	8.566008	GTATCAAACCAATCATGCACTTAATC	57.434	34.615	0.00	0.00	0.00	1.75
2487	2877	7.653311	GCAAGAAACAAACCAATCACTAGAAAT	59.347	33.333	0.00	0.00	0.00	2.17
2575	2984	4.284490	ACAACTGGAGTTAGAGCTGATTGA	59.716	41.667	0.00	0.00	36.32	2.57
2621	3034	3.375299	AGCGGAATTGATACTGCAACTTC	59.625	43.478	0.00	0.00	40.39	3.01
2622	3035	3.347216	AGCGGAATTGATACTGCAACTT	58.653	40.909	0.00	0.00	40.39	2.66
2624	3037	3.764885	AAGCGGAATTGATACTGCAAC	57.235	42.857	0.00	0.00	40.39	4.17
2625	3038	3.505680	ACAAAGCGGAATTGATACTGCAA	59.494	39.130	0.00	0.00	40.39	4.08
2626	3039	3.081061	ACAAAGCGGAATTGATACTGCA	58.919	40.909	0.00	0.00	40.39	4.41
2627	3040	3.764885	ACAAAGCGGAATTGATACTGC	57.235	42.857	0.00	0.00	38.51	4.40
2871	3290	5.163602	GGTGATGCATTTAAAACATCCGGTA	60.164	40.000	22.21	8.94	39.55	4.02
2872	3291	4.381505	GGTGATGCATTTAAAACATCCGGT	60.382	41.667	22.21	0.00	39.55	5.28
2873	3292	4.111916	GGTGATGCATTTAAAACATCCGG	58.888	43.478	22.21	0.00	39.55	5.14
2874	3293	4.742417	TGGTGATGCATTTAAAACATCCG	58.258	39.130	22.21	0.18	39.55	4.18
2951	3394	7.284489	TGCATGTTAAGGGATATAGAAACAACC	59.716	37.037	0.00	0.00	31.33	3.77
3094	3559	5.386958	AACTTGAAGTCACTAGCGACATA	57.613	39.130	13.18	0.00	38.43	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.