Multiple sequence alignment - TraesCS7A01G440400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G440400 chr7A 100.000 2268 0 0 1 2268 634941930 634939663 0.000000e+00 4189
1 TraesCS7A01G440400 chr7A 100.000 516 0 0 2584 3099 634939347 634938832 0.000000e+00 953
2 TraesCS7A01G440400 chr7A 98.039 153 2 1 2116 2268 633401002 633400851 6.590000e-67 265
3 TraesCS7A01G440400 chr7A 98.013 151 3 0 2118 2268 210837879 210837729 2.370000e-66 263
4 TraesCS7A01G440400 chr7A 97.351 151 4 0 2118 2268 633396983 633396833 1.100000e-64 257
5 TraesCS7A01G440400 chr7A 82.266 203 26 6 958 1158 634710994 634710800 1.910000e-37 167
6 TraesCS7A01G440400 chr7A 94.737 76 3 1 939 1013 634869157 634869082 1.950000e-22 117
7 TraesCS7A01G440400 chr7D 94.141 1280 58 10 847 2116 549392953 549391681 0.000000e+00 1932
8 TraesCS7A01G440400 chr7D 91.344 774 51 11 839 1602 549359637 549358870 0.000000e+00 1044
9 TraesCS7A01G440400 chr7D 90.769 520 43 4 1602 2117 549344810 549344292 0.000000e+00 689
10 TraesCS7A01G440400 chr7D 93.366 407 12 3 1 407 549407963 549407572 3.440000e-164 588
11 TraesCS7A01G440400 chr7D 94.366 213 2 5 605 813 549405106 549404900 4.990000e-83 318
12 TraesCS7A01G440400 chr7D 91.935 186 11 3 400 585 549405528 549405347 1.100000e-64 257
13 TraesCS7A01G440400 chr5A 97.441 508 13 0 2592 3099 417319610 417319103 0.000000e+00 867
14 TraesCS7A01G440400 chr6A 96.881 513 16 0 2587 3099 540137524 540137012 0.000000e+00 859
15 TraesCS7A01G440400 chr6A 95.922 515 21 0 2584 3098 607985987 607986501 0.000000e+00 835
16 TraesCS7A01G440400 chr3B 95.930 516 21 0 2584 3099 812797761 812797246 0.000000e+00 837
17 TraesCS7A01G440400 chr3B 96.753 154 5 0 2115 2268 778492635 778492788 1.100000e-64 257
18 TraesCS7A01G440400 chr2B 95.930 516 21 0 2584 3099 246080829 246080314 0.000000e+00 837
19 TraesCS7A01G440400 chr2B 96.732 153 5 0 2116 2268 693064993 693064841 3.970000e-64 255
20 TraesCS7A01G440400 chr2A 95.930 516 21 0 2584 3099 707212544 707213059 0.000000e+00 837
21 TraesCS7A01G440400 chr2A 95.543 516 23 0 2584 3099 774864126 774864641 0.000000e+00 826
22 TraesCS7A01G440400 chr2A 95.625 160 6 1 2110 2268 12346656 12346815 3.970000e-64 255
23 TraesCS7A01G440400 chr3A 95.543 516 23 0 2584 3099 99244819 99245334 0.000000e+00 826
24 TraesCS7A01G440400 chr3A 95.349 516 24 0 2584 3099 75402822 75402307 0.000000e+00 821
25 TraesCS7A01G440400 chr7B 86.667 375 35 8 1410 1782 593560867 593560506 4.810000e-108 401
26 TraesCS7A01G440400 chr7B 83.721 344 27 14 1777 2116 593559300 593558982 6.500000e-77 298
27 TraesCS7A01G440400 chr7B 85.348 273 30 5 894 1158 593561471 593561201 1.090000e-69 274
28 TraesCS7A01G440400 chr5B 97.351 151 4 0 2118 2268 679386308 679386158 1.100000e-64 257
29 TraesCS7A01G440400 chr4A 97.368 152 3 1 2118 2268 643444270 643444119 1.100000e-64 257
30 TraesCS7A01G440400 chr4A 97.368 152 3 1 2118 2268 734932913 734933064 1.100000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G440400 chr7A 634938832 634941930 3098 True 2571.000000 4189 100.000000 1 3099 2 chr7A.!!$R5 3098
1 TraesCS7A01G440400 chr7A 633396833 633401002 4169 True 261.000000 265 97.695000 2116 2268 2 chr7A.!!$R4 152
2 TraesCS7A01G440400 chr7D 549391681 549392953 1272 True 1932.000000 1932 94.141000 847 2116 1 chr7D.!!$R3 1269
3 TraesCS7A01G440400 chr7D 549358870 549359637 767 True 1044.000000 1044 91.344000 839 1602 1 chr7D.!!$R2 763
4 TraesCS7A01G440400 chr7D 549344292 549344810 518 True 689.000000 689 90.769000 1602 2117 1 chr7D.!!$R1 515
5 TraesCS7A01G440400 chr7D 549404900 549407963 3063 True 387.666667 588 93.222333 1 813 3 chr7D.!!$R4 812
6 TraesCS7A01G440400 chr5A 417319103 417319610 507 True 867.000000 867 97.441000 2592 3099 1 chr5A.!!$R1 507
7 TraesCS7A01G440400 chr6A 540137012 540137524 512 True 859.000000 859 96.881000 2587 3099 1 chr6A.!!$R1 512
8 TraesCS7A01G440400 chr6A 607985987 607986501 514 False 835.000000 835 95.922000 2584 3098 1 chr6A.!!$F1 514
9 TraesCS7A01G440400 chr3B 812797246 812797761 515 True 837.000000 837 95.930000 2584 3099 1 chr3B.!!$R1 515
10 TraesCS7A01G440400 chr2B 246080314 246080829 515 True 837.000000 837 95.930000 2584 3099 1 chr2B.!!$R1 515
11 TraesCS7A01G440400 chr2A 707212544 707213059 515 False 837.000000 837 95.930000 2584 3099 1 chr2A.!!$F2 515
12 TraesCS7A01G440400 chr2A 774864126 774864641 515 False 826.000000 826 95.543000 2584 3099 1 chr2A.!!$F3 515
13 TraesCS7A01G440400 chr3A 99244819 99245334 515 False 826.000000 826 95.543000 2584 3099 1 chr3A.!!$F1 515
14 TraesCS7A01G440400 chr3A 75402307 75402822 515 True 821.000000 821 95.349000 2584 3099 1 chr3A.!!$R1 515
15 TraesCS7A01G440400 chr7B 593558982 593561471 2489 True 324.333333 401 85.245333 894 2116 3 chr7B.!!$R1 1222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 539 0.034756 ACCACGCATGTGCTAGAACA 59.965 50.0 5.87 5.87 45.04 3.18 F
661 662 0.035439 TTCCGACTTCAAGGCCATCC 60.035 55.0 5.01 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 3625 1.000060 AGCATGTCACCAATGTTGCAC 60.000 47.619 0.00 0.0 32.99 4.57 R
2219 5424 2.539081 GGGCCCACCTCCTGTTTCT 61.539 63.158 19.95 0.0 35.85 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.594725 TGCAAAAAGAACACCTGGTGTAATA 59.405 36.000 31.13 8.95 46.79 0.98
94 95 4.685628 GTGTTACCATGCCACTTTCATTTG 59.314 41.667 0.00 0.00 0.00 2.32
95 96 4.343526 TGTTACCATGCCACTTTCATTTGT 59.656 37.500 0.00 0.00 0.00 2.83
140 141 3.687698 GCGTCCTGAAATAGCTACCAAAA 59.312 43.478 0.00 0.00 0.00 2.44
231 232 9.890629 TTACTCTCAAGCATTTTGTACATAGAT 57.109 29.630 0.00 0.00 0.00 1.98
242 243 8.664798 CATTTTGTACATAGATTTTCGTGGAGA 58.335 33.333 0.00 0.00 0.00 3.71
249 250 6.154706 ACATAGATTTTCGTGGAGAACCTACT 59.845 38.462 0.00 0.00 38.83 2.57
251 252 2.450609 TTTCGTGGAGAACCTACTGC 57.549 50.000 0.00 0.00 38.83 4.40
256 257 1.137282 GTGGAGAACCTACTGCTAGGC 59.863 57.143 0.00 0.00 43.42 3.93
257 258 0.753867 GGAGAACCTACTGCTAGGCC 59.246 60.000 0.00 0.00 43.42 5.19
258 259 0.753867 GAGAACCTACTGCTAGGCCC 59.246 60.000 0.00 0.00 43.42 5.80
259 260 0.042731 AGAACCTACTGCTAGGCCCA 59.957 55.000 0.00 0.00 43.42 5.36
260 261 0.466124 GAACCTACTGCTAGGCCCAG 59.534 60.000 0.00 1.76 43.42 4.45
261 262 0.983378 AACCTACTGCTAGGCCCAGG 60.983 60.000 11.60 4.53 43.42 4.45
262 263 1.383248 CCTACTGCTAGGCCCAGGT 60.383 63.158 11.60 0.00 33.12 4.00
263 264 1.690219 CCTACTGCTAGGCCCAGGTG 61.690 65.000 11.60 4.35 33.12 4.00
264 265 2.317149 CTACTGCTAGGCCCAGGTGC 62.317 65.000 11.60 4.58 34.65 5.01
294 295 5.614324 ATCCGATCAGATCCAACAGTAAA 57.386 39.130 4.73 0.00 0.00 2.01
307 308 4.380867 CCAACAGTAAATGGGATGTTCTGC 60.381 45.833 0.00 0.00 33.76 4.26
324 325 2.029560 TCTGCTCTCGCCACATATCATC 60.030 50.000 0.00 0.00 34.43 2.92
325 326 1.688197 TGCTCTCGCCACATATCATCA 59.312 47.619 0.00 0.00 34.43 3.07
326 327 2.102925 TGCTCTCGCCACATATCATCAA 59.897 45.455 0.00 0.00 34.43 2.57
327 328 2.735663 GCTCTCGCCACATATCATCAAG 59.264 50.000 0.00 0.00 0.00 3.02
328 329 3.553715 GCTCTCGCCACATATCATCAAGA 60.554 47.826 0.00 0.00 0.00 3.02
373 374 4.577834 TCTACGAAAGACATCACACACA 57.422 40.909 0.00 0.00 0.00 3.72
374 375 5.134202 TCTACGAAAGACATCACACACAT 57.866 39.130 0.00 0.00 0.00 3.21
375 376 5.538118 TCTACGAAAGACATCACACACATT 58.462 37.500 0.00 0.00 0.00 2.71
376 377 4.732285 ACGAAAGACATCACACACATTC 57.268 40.909 0.00 0.00 0.00 2.67
377 378 4.126437 ACGAAAGACATCACACACATTCA 58.874 39.130 0.00 0.00 0.00 2.57
378 379 4.024893 ACGAAAGACATCACACACATTCAC 60.025 41.667 0.00 0.00 0.00 3.18
379 380 4.024977 CGAAAGACATCACACACATTCACA 60.025 41.667 0.00 0.00 0.00 3.58
380 381 4.818534 AAGACATCACACACATTCACAC 57.181 40.909 0.00 0.00 0.00 3.82
381 382 3.141398 AGACATCACACACATTCACACC 58.859 45.455 0.00 0.00 0.00 4.16
382 383 2.226437 GACATCACACACATTCACACCC 59.774 50.000 0.00 0.00 0.00 4.61
383 384 1.541147 CATCACACACATTCACACCCC 59.459 52.381 0.00 0.00 0.00 4.95
384 385 0.843309 TCACACACATTCACACCCCT 59.157 50.000 0.00 0.00 0.00 4.79
385 386 1.202758 TCACACACATTCACACCCCTC 60.203 52.381 0.00 0.00 0.00 4.30
386 387 0.110486 ACACACATTCACACCCCTCC 59.890 55.000 0.00 0.00 0.00 4.30
387 388 0.110295 CACACATTCACACCCCTCCA 59.890 55.000 0.00 0.00 0.00 3.86
388 389 1.075601 ACACATTCACACCCCTCCAT 58.924 50.000 0.00 0.00 0.00 3.41
389 390 1.428912 ACACATTCACACCCCTCCATT 59.571 47.619 0.00 0.00 0.00 3.16
390 391 2.158325 ACACATTCACACCCCTCCATTT 60.158 45.455 0.00 0.00 0.00 2.32
391 392 3.075283 ACACATTCACACCCCTCCATTTA 59.925 43.478 0.00 0.00 0.00 1.40
392 393 4.264352 ACACATTCACACCCCTCCATTTAT 60.264 41.667 0.00 0.00 0.00 1.40
393 394 4.339247 CACATTCACACCCCTCCATTTATC 59.661 45.833 0.00 0.00 0.00 1.75
394 395 3.662759 TTCACACCCCTCCATTTATCC 57.337 47.619 0.00 0.00 0.00 2.59
395 396 2.567862 TCACACCCCTCCATTTATCCA 58.432 47.619 0.00 0.00 0.00 3.41
396 397 2.241176 TCACACCCCTCCATTTATCCAC 59.759 50.000 0.00 0.00 0.00 4.02
397 398 1.211949 ACACCCCTCCATTTATCCACG 59.788 52.381 0.00 0.00 0.00 4.94
398 399 0.843984 ACCCCTCCATTTATCCACGG 59.156 55.000 0.00 0.00 0.00 4.94
399 400 0.843984 CCCCTCCATTTATCCACGGT 59.156 55.000 0.00 0.00 0.00 4.83
400 401 1.214424 CCCCTCCATTTATCCACGGTT 59.786 52.381 0.00 0.00 0.00 4.44
401 402 2.440253 CCCCTCCATTTATCCACGGTTA 59.560 50.000 0.00 0.00 0.00 2.85
402 403 3.496160 CCCCTCCATTTATCCACGGTTAG 60.496 52.174 0.00 0.00 0.00 2.34
403 404 3.389983 CCCTCCATTTATCCACGGTTAGA 59.610 47.826 0.00 0.00 0.00 2.10
404 405 4.041691 CCCTCCATTTATCCACGGTTAGAT 59.958 45.833 0.00 0.00 0.00 1.98
405 406 5.238583 CCTCCATTTATCCACGGTTAGATC 58.761 45.833 0.00 0.00 0.00 2.75
406 407 5.221641 CCTCCATTTATCCACGGTTAGATCA 60.222 44.000 0.00 0.00 0.00 2.92
407 408 5.853936 TCCATTTATCCACGGTTAGATCAG 58.146 41.667 0.00 0.00 0.00 2.90
408 409 4.452455 CCATTTATCCACGGTTAGATCAGC 59.548 45.833 0.00 0.00 0.00 4.26
409 410 4.746535 TTTATCCACGGTTAGATCAGCA 57.253 40.909 0.00 0.00 0.00 4.41
410 411 2.898729 ATCCACGGTTAGATCAGCAG 57.101 50.000 0.00 0.00 0.00 4.24
411 412 0.824109 TCCACGGTTAGATCAGCAGG 59.176 55.000 0.00 0.00 0.00 4.85
412 413 0.179073 CCACGGTTAGATCAGCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
413 414 0.824109 CACGGTTAGATCAGCAGGGA 59.176 55.000 0.00 0.00 0.00 4.20
414 415 1.414181 CACGGTTAGATCAGCAGGGAT 59.586 52.381 0.00 0.00 0.00 3.85
415 416 1.414181 ACGGTTAGATCAGCAGGGATG 59.586 52.381 0.00 0.00 0.00 3.51
416 417 1.875576 CGGTTAGATCAGCAGGGATGC 60.876 57.143 0.00 0.00 0.00 3.91
417 418 1.141657 GGTTAGATCAGCAGGGATGCA 59.858 52.381 2.73 0.00 37.25 3.96
418 419 2.492012 GTTAGATCAGCAGGGATGCAG 58.508 52.381 2.73 0.00 37.25 4.41
419 420 2.092598 TAGATCAGCAGGGATGCAGA 57.907 50.000 2.73 0.11 37.25 4.26
420 421 1.436326 AGATCAGCAGGGATGCAGAT 58.564 50.000 7.71 7.71 42.42 2.90
421 422 1.072489 AGATCAGCAGGGATGCAGATG 59.928 52.381 12.08 0.00 40.36 2.90
422 423 0.537600 ATCAGCAGGGATGCAGATGC 60.538 55.000 7.24 7.02 39.13 3.91
423 424 3.332395 AGCAGGGATGCAGATGCT 58.668 55.556 10.82 10.82 43.92 3.79
424 425 0.108019 CAGCAGGGATGCAGATGCTA 59.892 55.000 14.86 0.00 46.84 3.49
425 426 0.841961 AGCAGGGATGCAGATGCTAA 59.158 50.000 13.99 0.00 46.70 3.09
426 427 1.213678 AGCAGGGATGCAGATGCTAAA 59.786 47.619 13.99 0.00 46.70 1.85
427 428 2.158505 AGCAGGGATGCAGATGCTAAAT 60.159 45.455 13.99 0.00 46.70 1.40
428 429 3.073503 AGCAGGGATGCAGATGCTAAATA 59.926 43.478 13.99 0.00 46.70 1.40
429 430 3.439476 GCAGGGATGCAGATGCTAAATAG 59.561 47.826 6.35 0.00 42.66 1.73
430 431 6.159693 GCAGGGATGCAGATGCTAAATAGC 62.160 50.000 6.35 5.48 42.66 2.97
442 443 2.814336 GCTAAATAGCCGAGGGAATTGG 59.186 50.000 0.82 0.00 43.39 3.16
443 444 2.364972 AAATAGCCGAGGGAATTGGG 57.635 50.000 0.00 0.00 32.21 4.12
444 445 1.222567 AATAGCCGAGGGAATTGGGT 58.777 50.000 0.00 0.00 45.62 4.51
445 446 3.639033 TAGCCGAGGGAATTGGGTA 57.361 52.632 0.00 0.00 41.71 3.69
446 447 1.125633 TAGCCGAGGGAATTGGGTAC 58.874 55.000 0.00 0.00 41.71 3.34
447 448 0.912487 AGCCGAGGGAATTGGGTACA 60.912 55.000 0.00 0.00 41.71 2.90
448 449 0.746923 GCCGAGGGAATTGGGTACAC 60.747 60.000 0.00 0.00 32.21 2.90
449 450 0.616371 CCGAGGGAATTGGGTACACA 59.384 55.000 0.00 0.00 0.00 3.72
450 451 1.211949 CCGAGGGAATTGGGTACACAT 59.788 52.381 0.00 0.00 0.00 3.21
451 452 2.288666 CGAGGGAATTGGGTACACATG 58.711 52.381 0.00 0.00 0.00 3.21
452 453 2.355716 CGAGGGAATTGGGTACACATGT 60.356 50.000 0.00 0.00 0.00 3.21
453 454 3.279434 GAGGGAATTGGGTACACATGTC 58.721 50.000 0.00 0.00 0.00 3.06
454 455 2.025321 AGGGAATTGGGTACACATGTCC 60.025 50.000 16.04 16.04 0.00 4.02
455 456 2.014128 GGAATTGGGTACACATGTCCG 58.986 52.381 10.87 0.00 0.00 4.79
456 457 1.400494 GAATTGGGTACACATGTCCGC 59.600 52.381 0.00 0.00 0.00 5.54
457 458 0.393808 ATTGGGTACACATGTCCGCC 60.394 55.000 0.00 0.00 0.00 6.13
458 459 2.510691 GGGTACACATGTCCGCCG 60.511 66.667 0.00 0.00 0.00 6.46
459 460 2.574929 GGTACACATGTCCGCCGA 59.425 61.111 0.00 0.00 0.00 5.54
460 461 1.143183 GGTACACATGTCCGCCGAT 59.857 57.895 0.00 0.00 0.00 4.18
461 462 0.874607 GGTACACATGTCCGCCGATC 60.875 60.000 0.00 0.00 0.00 3.69
462 463 0.179121 GTACACATGTCCGCCGATCA 60.179 55.000 0.00 0.00 0.00 2.92
463 464 0.750249 TACACATGTCCGCCGATCAT 59.250 50.000 0.00 0.00 0.00 2.45
464 465 0.107703 ACACATGTCCGCCGATCATT 60.108 50.000 0.00 0.00 0.00 2.57
465 466 0.583438 CACATGTCCGCCGATCATTC 59.417 55.000 0.00 0.00 0.00 2.67
466 467 0.177836 ACATGTCCGCCGATCATTCA 59.822 50.000 0.00 0.00 0.00 2.57
467 468 1.298602 CATGTCCGCCGATCATTCAA 58.701 50.000 0.00 0.00 0.00 2.69
468 469 1.262417 CATGTCCGCCGATCATTCAAG 59.738 52.381 0.00 0.00 0.00 3.02
469 470 0.461870 TGTCCGCCGATCATTCAAGG 60.462 55.000 0.00 0.00 0.00 3.61
470 471 0.179084 GTCCGCCGATCATTCAAGGA 60.179 55.000 0.00 0.00 0.00 3.36
471 472 0.539518 TCCGCCGATCATTCAAGGAA 59.460 50.000 0.00 0.00 0.00 3.36
472 473 1.140852 TCCGCCGATCATTCAAGGAAT 59.859 47.619 0.00 0.00 31.86 3.01
473 474 1.532868 CCGCCGATCATTCAAGGAATC 59.467 52.381 0.00 0.00 28.87 2.52
474 475 2.487934 CGCCGATCATTCAAGGAATCT 58.512 47.619 0.00 0.00 28.87 2.40
475 476 2.874701 CGCCGATCATTCAAGGAATCTT 59.125 45.455 0.00 0.00 28.87 2.40
476 477 3.313526 CGCCGATCATTCAAGGAATCTTT 59.686 43.478 0.00 0.00 28.87 2.52
477 478 4.553547 CGCCGATCATTCAAGGAATCTTTC 60.554 45.833 0.00 0.00 28.87 2.62
502 503 4.222847 GAGCCACGTCCCCCGATC 62.223 72.222 0.00 0.00 40.70 3.69
503 504 4.779733 AGCCACGTCCCCCGATCT 62.780 66.667 0.00 0.00 40.70 2.75
504 505 4.530857 GCCACGTCCCCCGATCTG 62.531 72.222 0.00 0.00 40.70 2.90
505 506 2.758327 CCACGTCCCCCGATCTGA 60.758 66.667 0.00 0.00 40.70 3.27
506 507 2.134287 CCACGTCCCCCGATCTGAT 61.134 63.158 0.00 0.00 40.70 2.90
507 508 1.686325 CCACGTCCCCCGATCTGATT 61.686 60.000 0.00 0.00 40.70 2.57
508 509 0.178068 CACGTCCCCCGATCTGATTT 59.822 55.000 0.00 0.00 40.70 2.17
509 510 0.178068 ACGTCCCCCGATCTGATTTG 59.822 55.000 0.00 0.00 40.70 2.32
510 511 0.464036 CGTCCCCCGATCTGATTTGA 59.536 55.000 0.00 0.00 39.56 2.69
511 512 1.134521 CGTCCCCCGATCTGATTTGAA 60.135 52.381 0.00 0.00 39.56 2.69
512 513 2.485479 CGTCCCCCGATCTGATTTGAAT 60.485 50.000 0.00 0.00 39.56 2.57
513 514 3.555966 GTCCCCCGATCTGATTTGAATT 58.444 45.455 0.00 0.00 0.00 2.17
514 515 4.714632 GTCCCCCGATCTGATTTGAATTA 58.285 43.478 0.00 0.00 0.00 1.40
515 516 4.515567 GTCCCCCGATCTGATTTGAATTAC 59.484 45.833 0.00 0.00 0.00 1.89
516 517 3.821033 CCCCCGATCTGATTTGAATTACC 59.179 47.826 0.00 0.00 0.00 2.85
517 518 3.821033 CCCCGATCTGATTTGAATTACCC 59.179 47.826 0.00 0.00 0.00 3.69
518 519 4.460263 CCCGATCTGATTTGAATTACCCA 58.540 43.478 0.00 0.00 0.00 4.51
519 520 4.887071 CCCGATCTGATTTGAATTACCCAA 59.113 41.667 0.00 0.00 0.00 4.12
520 521 5.221048 CCCGATCTGATTTGAATTACCCAAC 60.221 44.000 0.00 0.00 0.00 3.77
521 522 5.221048 CCGATCTGATTTGAATTACCCAACC 60.221 44.000 0.00 0.00 0.00 3.77
522 523 5.356751 CGATCTGATTTGAATTACCCAACCA 59.643 40.000 0.00 0.00 0.00 3.67
523 524 5.975693 TCTGATTTGAATTACCCAACCAC 57.024 39.130 0.00 0.00 0.00 4.16
524 525 4.457603 TCTGATTTGAATTACCCAACCACG 59.542 41.667 0.00 0.00 0.00 4.94
525 526 3.057174 TGATTTGAATTACCCAACCACGC 60.057 43.478 0.00 0.00 0.00 5.34
526 527 1.982660 TTGAATTACCCAACCACGCA 58.017 45.000 0.00 0.00 0.00 5.24
527 528 2.208132 TGAATTACCCAACCACGCAT 57.792 45.000 0.00 0.00 0.00 4.73
528 529 1.815613 TGAATTACCCAACCACGCATG 59.184 47.619 0.00 0.00 0.00 4.06
529 530 1.816224 GAATTACCCAACCACGCATGT 59.184 47.619 0.00 0.00 0.00 3.21
530 531 1.173043 ATTACCCAACCACGCATGTG 58.827 50.000 4.30 4.30 46.00 3.21
531 532 1.519751 TTACCCAACCACGCATGTGC 61.520 55.000 6.08 0.00 45.04 4.57
532 533 2.404566 TACCCAACCACGCATGTGCT 62.405 55.000 6.08 0.00 45.04 4.40
533 534 1.673993 CCCAACCACGCATGTGCTA 60.674 57.895 6.08 0.00 45.04 3.49
534 535 1.647545 CCCAACCACGCATGTGCTAG 61.648 60.000 6.08 0.00 45.04 3.42
535 536 0.673333 CCAACCACGCATGTGCTAGA 60.673 55.000 6.08 0.00 45.04 2.43
536 537 1.155889 CAACCACGCATGTGCTAGAA 58.844 50.000 6.08 0.00 45.04 2.10
537 538 1.135972 CAACCACGCATGTGCTAGAAC 60.136 52.381 6.08 0.00 45.04 3.01
538 539 0.034756 ACCACGCATGTGCTAGAACA 59.965 50.000 5.87 5.87 45.04 3.18
539 540 0.723414 CCACGCATGTGCTAGAACAG 59.277 55.000 9.98 3.05 45.04 3.16
540 541 0.723414 CACGCATGTGCTAGAACAGG 59.277 55.000 11.33 11.33 39.67 4.00
541 542 0.608130 ACGCATGTGCTAGAACAGGA 59.392 50.000 19.76 0.00 39.32 3.86
542 543 1.284657 CGCATGTGCTAGAACAGGAG 58.715 55.000 19.76 12.38 39.32 3.69
543 544 1.012841 GCATGTGCTAGAACAGGAGC 58.987 55.000 19.76 13.86 33.77 4.70
544 545 1.406614 GCATGTGCTAGAACAGGAGCT 60.407 52.381 19.76 0.00 39.54 4.09
545 546 2.159043 GCATGTGCTAGAACAGGAGCTA 60.159 50.000 19.76 0.00 39.54 3.32
546 547 3.679917 GCATGTGCTAGAACAGGAGCTAA 60.680 47.826 19.76 0.00 39.54 3.09
547 548 4.701765 CATGTGCTAGAACAGGAGCTAAT 58.298 43.478 10.10 0.00 39.54 1.73
548 549 5.740224 GCATGTGCTAGAACAGGAGCTAATA 60.740 44.000 19.76 0.00 39.54 0.98
549 550 5.932619 TGTGCTAGAACAGGAGCTAATAA 57.067 39.130 0.00 0.00 39.54 1.40
550 551 5.907207 TGTGCTAGAACAGGAGCTAATAAG 58.093 41.667 0.00 0.00 39.54 1.73
551 552 5.163405 TGTGCTAGAACAGGAGCTAATAAGG 60.163 44.000 0.00 0.00 39.54 2.69
552 553 5.069251 GTGCTAGAACAGGAGCTAATAAGGA 59.931 44.000 0.00 0.00 39.54 3.36
553 554 5.303078 TGCTAGAACAGGAGCTAATAAGGAG 59.697 44.000 0.00 0.00 39.54 3.69
554 555 4.681074 AGAACAGGAGCTAATAAGGAGC 57.319 45.455 0.00 0.00 40.42 4.70
555 556 3.068873 AGAACAGGAGCTAATAAGGAGCG 59.931 47.826 0.00 0.00 44.98 5.03
556 557 1.069358 ACAGGAGCTAATAAGGAGCGC 59.931 52.381 0.00 0.00 44.98 5.92
557 558 1.069204 CAGGAGCTAATAAGGAGCGCA 59.931 52.381 11.47 0.00 44.98 6.09
558 559 1.342819 AGGAGCTAATAAGGAGCGCAG 59.657 52.381 11.47 0.00 44.98 5.18
559 560 1.606737 GGAGCTAATAAGGAGCGCAGG 60.607 57.143 11.47 0.00 44.98 4.85
560 561 1.069358 GAGCTAATAAGGAGCGCAGGT 59.931 52.381 11.47 0.00 44.98 4.00
585 586 4.849329 GGAGCCGCGTCGATCGTT 62.849 66.667 15.94 0.00 42.13 3.85
586 587 2.879462 GAGCCGCGTCGATCGTTT 60.879 61.111 15.94 0.00 42.13 3.60
587 588 1.584483 GAGCCGCGTCGATCGTTTA 60.584 57.895 15.94 0.00 42.13 2.01
588 589 1.795432 GAGCCGCGTCGATCGTTTAC 61.795 60.000 15.94 5.13 42.13 2.01
589 590 2.153945 GCCGCGTCGATCGTTTACA 61.154 57.895 15.94 0.00 42.13 2.41
590 591 1.477030 GCCGCGTCGATCGTTTACAT 61.477 55.000 15.94 0.00 42.13 2.29
591 592 0.918619 CCGCGTCGATCGTTTACATT 59.081 50.000 15.94 0.00 42.13 2.71
592 593 1.072348 CCGCGTCGATCGTTTACATTC 60.072 52.381 15.94 0.00 42.13 2.67
593 594 1.072348 CGCGTCGATCGTTTACATTCC 60.072 52.381 15.94 0.00 42.13 3.01
594 595 1.921887 GCGTCGATCGTTTACATTCCA 59.078 47.619 15.94 0.00 42.13 3.53
595 596 2.284855 GCGTCGATCGTTTACATTCCAC 60.285 50.000 15.94 0.46 42.13 4.02
596 597 3.176708 CGTCGATCGTTTACATTCCACT 58.823 45.455 15.94 0.00 34.52 4.00
597 598 3.239941 CGTCGATCGTTTACATTCCACTC 59.760 47.826 15.94 0.00 34.52 3.51
598 599 4.421948 GTCGATCGTTTACATTCCACTCT 58.578 43.478 15.94 0.00 0.00 3.24
599 600 4.499758 GTCGATCGTTTACATTCCACTCTC 59.500 45.833 15.94 0.00 0.00 3.20
600 601 3.797256 CGATCGTTTACATTCCACTCTCC 59.203 47.826 7.03 0.00 0.00 3.71
601 602 3.604875 TCGTTTACATTCCACTCTCCC 57.395 47.619 0.00 0.00 0.00 4.30
602 603 2.235402 TCGTTTACATTCCACTCTCCCC 59.765 50.000 0.00 0.00 0.00 4.81
603 604 2.236395 CGTTTACATTCCACTCTCCCCT 59.764 50.000 0.00 0.00 0.00 4.79
604 605 3.679083 CGTTTACATTCCACTCTCCCCTC 60.679 52.174 0.00 0.00 0.00 4.30
605 606 1.776662 TACATTCCACTCTCCCCTCG 58.223 55.000 0.00 0.00 0.00 4.63
606 607 1.144936 CATTCCACTCTCCCCTCGC 59.855 63.158 0.00 0.00 0.00 5.03
607 608 2.066999 ATTCCACTCTCCCCTCGCC 61.067 63.158 0.00 0.00 0.00 5.54
635 636 4.988598 ACCACCGGCAGCGTTCAG 62.989 66.667 0.00 0.00 0.00 3.02
646 647 3.177600 CGTTCAGCATGGGTTCCG 58.822 61.111 0.00 0.00 36.16 4.30
647 648 1.375396 CGTTCAGCATGGGTTCCGA 60.375 57.895 0.00 0.00 36.16 4.55
648 649 1.635663 CGTTCAGCATGGGTTCCGAC 61.636 60.000 0.00 0.00 36.16 4.79
649 650 0.321653 GTTCAGCATGGGTTCCGACT 60.322 55.000 0.00 0.00 36.16 4.18
650 651 0.400213 TTCAGCATGGGTTCCGACTT 59.600 50.000 0.00 0.00 36.16 3.01
651 652 0.036388 TCAGCATGGGTTCCGACTTC 60.036 55.000 0.00 0.00 36.16 3.01
652 653 0.321564 CAGCATGGGTTCCGACTTCA 60.322 55.000 0.00 0.00 0.00 3.02
653 654 0.400213 AGCATGGGTTCCGACTTCAA 59.600 50.000 0.00 0.00 0.00 2.69
654 655 0.804989 GCATGGGTTCCGACTTCAAG 59.195 55.000 0.00 0.00 0.00 3.02
655 656 1.453155 CATGGGTTCCGACTTCAAGG 58.547 55.000 0.00 0.00 0.00 3.61
656 657 0.322546 ATGGGTTCCGACTTCAAGGC 60.323 55.000 0.00 0.00 0.00 4.35
657 658 1.674651 GGGTTCCGACTTCAAGGCC 60.675 63.158 0.00 0.00 0.00 5.19
658 659 1.072505 GGTTCCGACTTCAAGGCCA 59.927 57.895 5.01 0.00 0.00 5.36
659 660 0.322546 GGTTCCGACTTCAAGGCCAT 60.323 55.000 5.01 0.00 0.00 4.40
660 661 1.087501 GTTCCGACTTCAAGGCCATC 58.912 55.000 5.01 0.00 0.00 3.51
661 662 0.035439 TTCCGACTTCAAGGCCATCC 60.035 55.000 5.01 0.00 0.00 3.51
662 663 1.452108 CCGACTTCAAGGCCATCCC 60.452 63.158 5.01 0.00 0.00 3.85
663 664 1.815421 CGACTTCAAGGCCATCCCG 60.815 63.158 5.01 0.00 39.21 5.14
664 665 2.044946 ACTTCAAGGCCATCCCGC 60.045 61.111 5.01 0.00 39.21 6.13
665 666 2.273449 CTTCAAGGCCATCCCGCT 59.727 61.111 5.01 0.00 39.21 5.52
666 667 1.821332 CTTCAAGGCCATCCCGCTC 60.821 63.158 5.01 0.00 39.21 5.03
667 668 3.680620 TTCAAGGCCATCCCGCTCG 62.681 63.158 5.01 0.00 39.21 5.03
668 669 4.473520 CAAGGCCATCCCGCTCGT 62.474 66.667 5.01 0.00 39.21 4.18
669 670 4.162690 AAGGCCATCCCGCTCGTC 62.163 66.667 5.01 0.00 39.21 4.20
691 692 2.882876 CGTAGGCACGCTACCAGT 59.117 61.111 0.00 0.00 42.05 4.00
692 693 1.226603 CGTAGGCACGCTACCAGTC 60.227 63.158 0.00 0.00 42.05 3.51
693 694 1.888018 GTAGGCACGCTACCAGTCA 59.112 57.895 0.00 0.00 0.00 3.41
694 695 0.245539 GTAGGCACGCTACCAGTCAA 59.754 55.000 0.00 0.00 0.00 3.18
695 696 1.134788 GTAGGCACGCTACCAGTCAAT 60.135 52.381 0.00 0.00 0.00 2.57
696 697 0.108138 AGGCACGCTACCAGTCAATC 60.108 55.000 0.00 0.00 0.00 2.67
697 698 0.391130 GGCACGCTACCAGTCAATCA 60.391 55.000 0.00 0.00 0.00 2.57
698 699 1.438651 GCACGCTACCAGTCAATCAA 58.561 50.000 0.00 0.00 0.00 2.57
699 700 1.804151 GCACGCTACCAGTCAATCAAA 59.196 47.619 0.00 0.00 0.00 2.69
700 701 2.412847 GCACGCTACCAGTCAATCAAAC 60.413 50.000 0.00 0.00 0.00 2.93
701 702 2.805671 CACGCTACCAGTCAATCAAACA 59.194 45.455 0.00 0.00 0.00 2.83
702 703 3.067106 ACGCTACCAGTCAATCAAACAG 58.933 45.455 0.00 0.00 0.00 3.16
703 704 2.159653 CGCTACCAGTCAATCAAACAGC 60.160 50.000 0.00 0.00 0.00 4.40
704 705 2.162408 GCTACCAGTCAATCAAACAGCC 59.838 50.000 0.00 0.00 0.00 4.85
705 706 1.620822 ACCAGTCAATCAAACAGCCC 58.379 50.000 0.00 0.00 0.00 5.19
706 707 0.523072 CCAGTCAATCAAACAGCCCG 59.477 55.000 0.00 0.00 0.00 6.13
707 708 1.238439 CAGTCAATCAAACAGCCCGT 58.762 50.000 0.00 0.00 0.00 5.28
708 709 1.069022 CAGTCAATCAAACAGCCCGTG 60.069 52.381 0.00 0.00 0.00 4.94
709 710 1.202758 AGTCAATCAAACAGCCCGTGA 60.203 47.619 0.00 0.00 0.00 4.35
710 711 1.606668 GTCAATCAAACAGCCCGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
711 712 2.228822 GTCAATCAAACAGCCCGTGAAT 59.771 45.455 0.00 0.00 0.00 2.57
712 713 2.487762 TCAATCAAACAGCCCGTGAATC 59.512 45.455 0.00 0.00 0.00 2.52
713 714 2.198827 ATCAAACAGCCCGTGAATCA 57.801 45.000 0.00 0.00 0.00 2.57
714 715 1.974265 TCAAACAGCCCGTGAATCAA 58.026 45.000 0.00 0.00 0.00 2.57
715 716 1.606668 TCAAACAGCCCGTGAATCAAC 59.393 47.619 0.00 0.00 0.00 3.18
716 717 0.958822 AAACAGCCCGTGAATCAACC 59.041 50.000 0.00 0.00 0.00 3.77
717 718 1.234615 AACAGCCCGTGAATCAACCG 61.235 55.000 0.00 0.00 0.00 4.44
718 719 2.046314 AGCCCGTGAATCAACCGG 60.046 61.111 0.00 0.00 41.37 5.28
719 720 2.359478 GCCCGTGAATCAACCGGT 60.359 61.111 0.00 0.00 40.10 5.28
720 721 1.078988 GCCCGTGAATCAACCGGTA 60.079 57.895 8.00 0.00 40.10 4.02
721 722 0.674269 GCCCGTGAATCAACCGGTAA 60.674 55.000 8.00 0.00 40.10 2.85
722 723 1.365699 CCCGTGAATCAACCGGTAAG 58.634 55.000 8.00 3.56 40.10 2.34
723 724 1.338389 CCCGTGAATCAACCGGTAAGT 60.338 52.381 8.00 0.00 40.10 2.24
724 725 2.094078 CCCGTGAATCAACCGGTAAGTA 60.094 50.000 8.00 0.00 40.10 2.24
725 726 3.587923 CCGTGAATCAACCGGTAAGTAA 58.412 45.455 8.00 0.00 37.00 2.24
726 727 4.186159 CCGTGAATCAACCGGTAAGTAAT 58.814 43.478 8.00 0.00 37.00 1.89
727 728 4.632688 CCGTGAATCAACCGGTAAGTAATT 59.367 41.667 8.00 3.40 37.00 1.40
728 729 5.446741 CCGTGAATCAACCGGTAAGTAATTG 60.447 44.000 8.00 0.00 37.00 2.32
729 730 5.329493 GTGAATCAACCGGTAAGTAATTGC 58.671 41.667 8.00 0.00 0.00 3.56
730 731 5.123344 GTGAATCAACCGGTAAGTAATTGCT 59.877 40.000 8.00 0.00 0.00 3.91
731 732 5.353123 TGAATCAACCGGTAAGTAATTGCTC 59.647 40.000 8.00 1.53 0.00 4.26
732 733 4.274602 TCAACCGGTAAGTAATTGCTCA 57.725 40.909 8.00 0.00 0.00 4.26
733 734 4.839121 TCAACCGGTAAGTAATTGCTCAT 58.161 39.130 8.00 0.00 0.00 2.90
734 735 4.873827 TCAACCGGTAAGTAATTGCTCATC 59.126 41.667 8.00 0.00 0.00 2.92
735 736 4.755266 ACCGGTAAGTAATTGCTCATCT 57.245 40.909 4.49 0.00 0.00 2.90
736 737 5.864418 ACCGGTAAGTAATTGCTCATCTA 57.136 39.130 4.49 0.00 0.00 1.98
737 738 5.598769 ACCGGTAAGTAATTGCTCATCTAC 58.401 41.667 4.49 0.00 0.00 2.59
738 739 5.128171 ACCGGTAAGTAATTGCTCATCTACA 59.872 40.000 4.49 0.00 0.00 2.74
739 740 5.462398 CCGGTAAGTAATTGCTCATCTACAC 59.538 44.000 0.00 0.00 0.00 2.90
740 741 6.273825 CGGTAAGTAATTGCTCATCTACACT 58.726 40.000 0.00 0.00 0.00 3.55
741 742 6.418226 CGGTAAGTAATTGCTCATCTACACTC 59.582 42.308 0.00 0.00 0.00 3.51
742 743 6.702282 GGTAAGTAATTGCTCATCTACACTCC 59.298 42.308 0.00 0.00 0.00 3.85
743 744 4.938080 AGTAATTGCTCATCTACACTCCG 58.062 43.478 0.00 0.00 0.00 4.63
744 745 2.231215 ATTGCTCATCTACACTCCGC 57.769 50.000 0.00 0.00 0.00 5.54
745 746 0.894835 TTGCTCATCTACACTCCGCA 59.105 50.000 0.00 0.00 0.00 5.69
746 747 0.173481 TGCTCATCTACACTCCGCAC 59.827 55.000 0.00 0.00 0.00 5.34
747 748 0.867753 GCTCATCTACACTCCGCACG 60.868 60.000 0.00 0.00 0.00 5.34
748 749 0.867753 CTCATCTACACTCCGCACGC 60.868 60.000 0.00 0.00 0.00 5.34
749 750 1.153842 CATCTACACTCCGCACGCA 60.154 57.895 0.00 0.00 0.00 5.24
750 751 0.528466 CATCTACACTCCGCACGCAT 60.528 55.000 0.00 0.00 0.00 4.73
751 752 0.175760 ATCTACACTCCGCACGCATT 59.824 50.000 0.00 0.00 0.00 3.56
752 753 0.735978 TCTACACTCCGCACGCATTG 60.736 55.000 0.00 0.00 0.00 2.82
753 754 1.005512 TACACTCCGCACGCATTGT 60.006 52.632 0.00 0.00 0.00 2.71
754 755 0.601576 TACACTCCGCACGCATTGTT 60.602 50.000 0.00 0.00 0.00 2.83
755 756 1.154413 CACTCCGCACGCATTGTTC 60.154 57.895 0.00 0.00 0.00 3.18
756 757 1.596752 ACTCCGCACGCATTGTTCA 60.597 52.632 0.00 0.00 0.00 3.18
757 758 1.133253 CTCCGCACGCATTGTTCAG 59.867 57.895 0.00 0.00 0.00 3.02
758 759 1.291184 CTCCGCACGCATTGTTCAGA 61.291 55.000 0.00 0.00 0.00 3.27
759 760 1.154413 CCGCACGCATTGTTCAGAC 60.154 57.895 0.00 0.00 0.00 3.51
760 761 1.569003 CGCACGCATTGTTCAGACA 59.431 52.632 0.00 0.00 0.00 3.41
761 762 0.166597 CGCACGCATTGTTCAGACAT 59.833 50.000 0.00 0.00 35.29 3.06
762 763 1.787989 CGCACGCATTGTTCAGACATC 60.788 52.381 0.00 0.00 35.29 3.06
763 764 1.197492 GCACGCATTGTTCAGACATCA 59.803 47.619 0.00 0.00 35.29 3.07
764 765 2.726989 GCACGCATTGTTCAGACATCAG 60.727 50.000 0.00 0.00 35.29 2.90
765 766 1.466167 ACGCATTGTTCAGACATCAGC 59.534 47.619 0.00 0.00 35.29 4.26
766 767 1.528400 CGCATTGTTCAGACATCAGCG 60.528 52.381 0.00 0.00 41.04 5.18
767 768 1.792993 GCATTGTTCAGACATCAGCGC 60.793 52.381 0.00 0.00 35.29 5.92
768 769 0.723414 ATTGTTCAGACATCAGCGCG 59.277 50.000 0.00 0.00 35.29 6.86
769 770 1.900585 TTGTTCAGACATCAGCGCGC 61.901 55.000 26.66 26.66 35.29 6.86
770 771 2.097038 GTTCAGACATCAGCGCGCT 61.097 57.895 31.32 31.32 0.00 5.92
771 772 1.807165 TTCAGACATCAGCGCGCTC 60.807 57.895 34.28 20.49 0.00 5.03
772 773 3.614659 CAGACATCAGCGCGCTCG 61.615 66.667 34.28 25.67 39.07 5.03
773 774 4.121669 AGACATCAGCGCGCTCGT 62.122 61.111 34.28 27.63 38.14 4.18
774 775 3.906649 GACATCAGCGCGCTCGTG 61.907 66.667 34.28 31.65 38.14 4.35
777 778 4.862092 ATCAGCGCGCTCGTGGAG 62.862 66.667 34.28 19.61 38.14 3.86
780 781 4.785512 AGCGCGCTCGTGGAGAAG 62.786 66.667 31.32 0.00 38.14 2.85
782 783 4.421479 CGCGCTCGTGGAGAAGGT 62.421 66.667 5.56 0.00 0.00 3.50
783 784 2.507324 GCGCTCGTGGAGAAGGTC 60.507 66.667 0.00 0.00 0.00 3.85
784 785 2.202492 CGCTCGTGGAGAAGGTCG 60.202 66.667 0.00 0.00 0.00 4.79
785 786 2.687805 CGCTCGTGGAGAAGGTCGA 61.688 63.158 0.00 0.00 0.00 4.20
786 787 1.153997 GCTCGTGGAGAAGGTCGAC 60.154 63.158 7.13 7.13 0.00 4.20
790 791 3.626154 GTGGAGAAGGTCGACGATC 57.374 57.895 9.92 10.15 0.00 3.69
791 792 0.100861 GTGGAGAAGGTCGACGATCC 59.899 60.000 9.92 13.66 0.00 3.36
792 793 1.355916 GGAGAAGGTCGACGATCCG 59.644 63.158 9.92 0.00 0.00 4.18
793 794 1.355916 GAGAAGGTCGACGATCCGG 59.644 63.158 9.92 0.00 0.00 5.14
794 795 2.061182 GAGAAGGTCGACGATCCGGG 62.061 65.000 9.92 0.00 0.00 5.73
795 796 3.769875 GAAGGTCGACGATCCGGGC 62.770 68.421 9.92 0.00 0.00 6.13
797 798 3.912907 GGTCGACGATCCGGGCAT 61.913 66.667 9.92 0.00 0.00 4.40
798 799 2.658593 GTCGACGATCCGGGCATG 60.659 66.667 0.00 0.00 0.00 4.06
799 800 3.911698 TCGACGATCCGGGCATGG 61.912 66.667 0.00 0.00 0.00 3.66
819 820 2.421739 GGCGACGTGGGCTGATAT 59.578 61.111 16.91 0.00 0.00 1.63
820 821 1.227556 GGCGACGTGGGCTGATATT 60.228 57.895 16.91 0.00 0.00 1.28
821 822 0.814010 GGCGACGTGGGCTGATATTT 60.814 55.000 16.91 0.00 0.00 1.40
822 823 1.014352 GCGACGTGGGCTGATATTTT 58.986 50.000 0.00 0.00 0.00 1.82
823 824 1.400494 GCGACGTGGGCTGATATTTTT 59.600 47.619 0.00 0.00 0.00 1.94
850 851 4.158579 CACTAGTAATGACCACTCAGCTCA 59.841 45.833 0.00 0.00 0.00 4.26
851 852 4.959210 ACTAGTAATGACCACTCAGCTCAT 59.041 41.667 0.00 0.00 0.00 2.90
853 854 5.939764 AGTAATGACCACTCAGCTCATTA 57.060 39.130 0.00 0.00 36.33 1.90
929 935 6.801539 TGTTAACTACTCCAATTGCTCTTG 57.198 37.500 7.22 0.00 0.00 3.02
968 979 5.238624 ACTAGTGATGCTTATCATGCCAT 57.761 39.130 0.00 0.00 35.05 4.40
1045 1057 3.564027 CGCCGTCGGATGCTTTCC 61.564 66.667 17.49 0.00 41.59 3.13
1219 1569 2.265367 TCTGCTCACTTGGGTGGATAA 58.735 47.619 0.00 0.00 43.17 1.75
1391 2802 5.992217 GTGGAGGGTCTTGCAGTTTATATAG 59.008 44.000 0.00 0.00 0.00 1.31
1519 3103 6.930722 CACCACTGTCATATACATCTTGCATA 59.069 38.462 0.00 0.00 37.50 3.14
1522 3106 9.006839 CCACTGTCATATACATCTTGCATATTT 57.993 33.333 0.00 0.00 37.50 1.40
1545 3131 1.028905 TTTGGTTTGTTCCCTCTGCG 58.971 50.000 0.00 0.00 0.00 5.18
1549 3135 1.153066 TTTGTTCCCTCTGCGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
1661 3625 4.821935 GTCCCTGGGACCTTTGTG 57.178 61.111 31.73 0.00 46.19 3.33
1739 3703 4.021104 TGATCCTACTCCAACTTCTGTGTG 60.021 45.833 0.00 0.00 0.00 3.82
1867 5044 3.074412 CCGTGTATCTGTTGCCTTCTTT 58.926 45.455 0.00 0.00 0.00 2.52
1874 5051 2.806244 TCTGTTGCCTTCTTTTACGAGC 59.194 45.455 0.00 0.00 0.00 5.03
1882 5059 6.817184 TGCCTTCTTTTACGAGCTATCTATT 58.183 36.000 0.00 0.00 0.00 1.73
1895 5072 7.225538 ACGAGCTATCTATTCATCAACAAAAGG 59.774 37.037 0.00 0.00 0.00 3.11
1944 5123 2.099592 ACCAACCATTTCTATGCATGCG 59.900 45.455 14.09 0.00 0.00 4.73
1948 5127 0.956633 CATTTCTATGCATGCGGCCT 59.043 50.000 14.09 0.00 43.89 5.19
1950 5129 1.473258 TTTCTATGCATGCGGCCTTT 58.527 45.000 14.09 0.00 43.89 3.11
1951 5130 1.473258 TTCTATGCATGCGGCCTTTT 58.527 45.000 14.09 0.00 43.89 2.27
1967 5146 5.983118 CGGCCTTTTGTACTCAAATTCTTTT 59.017 36.000 0.00 0.00 42.14 2.27
2137 5342 6.681729 AACTGTAGAAGGACAAGTTATGGA 57.318 37.500 0.00 0.00 0.00 3.41
2138 5343 6.875972 ACTGTAGAAGGACAAGTTATGGAT 57.124 37.500 0.00 0.00 0.00 3.41
2219 5424 4.076394 GGCCACAACCTCAACTATACAAA 58.924 43.478 0.00 0.00 0.00 2.83
2870 6075 1.069427 GCAACAGCATTGGCCACAA 59.931 52.632 3.88 0.00 42.56 3.33
2997 6202 1.227674 GAGTATCGGGGCAGCCAAG 60.228 63.158 15.19 6.39 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.362932 TCTTGACGAGAGATGTCATGAC 57.637 45.455 19.27 19.27 45.10 3.06
95 96 3.758554 TGTCTTGACGAGAGATGTCATGA 59.241 43.478 7.38 7.38 45.10 3.07
140 141 8.373220 AGATGCCTTTCAAGATGAAAATCTTTT 58.627 29.630 10.51 0.00 44.69 2.27
165 166 8.632906 ATTAAAGATGGATCTGGAATGCTAAG 57.367 34.615 0.00 0.00 37.19 2.18
231 232 2.367567 AGCAGTAGGTTCTCCACGAAAA 59.632 45.455 0.00 0.00 35.89 2.29
261 262 1.004440 GATCGGATAGGCTGGGCAC 60.004 63.158 0.00 0.00 0.00 5.01
262 263 1.459348 TGATCGGATAGGCTGGGCA 60.459 57.895 0.00 0.00 0.00 5.36
263 264 1.188219 TCTGATCGGATAGGCTGGGC 61.188 60.000 0.00 0.00 0.00 5.36
264 265 1.480137 GATCTGATCGGATAGGCTGGG 59.520 57.143 17.16 0.00 0.00 4.45
307 308 3.986572 GTCTTGATGATATGTGGCGAGAG 59.013 47.826 0.00 0.00 0.00 3.20
324 325 0.329596 CCCCTCCCCTTCTTGTCTTG 59.670 60.000 0.00 0.00 0.00 3.02
325 326 0.103876 ACCCCTCCCCTTCTTGTCTT 60.104 55.000 0.00 0.00 0.00 3.01
326 327 0.842467 CACCCCTCCCCTTCTTGTCT 60.842 60.000 0.00 0.00 0.00 3.41
327 328 1.685820 CACCCCTCCCCTTCTTGTC 59.314 63.158 0.00 0.00 0.00 3.18
328 329 2.539081 GCACCCCTCCCCTTCTTGT 61.539 63.158 0.00 0.00 0.00 3.16
373 374 3.531397 TGGATAAATGGAGGGGTGTGAAT 59.469 43.478 0.00 0.00 0.00 2.57
374 375 2.922955 TGGATAAATGGAGGGGTGTGAA 59.077 45.455 0.00 0.00 0.00 3.18
375 376 2.241176 GTGGATAAATGGAGGGGTGTGA 59.759 50.000 0.00 0.00 0.00 3.58
376 377 2.654863 GTGGATAAATGGAGGGGTGTG 58.345 52.381 0.00 0.00 0.00 3.82
377 378 1.211949 CGTGGATAAATGGAGGGGTGT 59.788 52.381 0.00 0.00 0.00 4.16
378 379 1.476833 CCGTGGATAAATGGAGGGGTG 60.477 57.143 0.00 0.00 0.00 4.61
379 380 0.843984 CCGTGGATAAATGGAGGGGT 59.156 55.000 0.00 0.00 0.00 4.95
380 381 0.843984 ACCGTGGATAAATGGAGGGG 59.156 55.000 0.00 0.00 0.00 4.79
381 382 2.729028 AACCGTGGATAAATGGAGGG 57.271 50.000 0.00 0.00 0.00 4.30
382 383 4.682778 TCTAACCGTGGATAAATGGAGG 57.317 45.455 0.00 0.00 0.00 4.30
383 384 5.853936 TGATCTAACCGTGGATAAATGGAG 58.146 41.667 0.00 0.00 0.00 3.86
384 385 5.741964 GCTGATCTAACCGTGGATAAATGGA 60.742 44.000 0.00 0.00 0.00 3.41
385 386 4.452455 GCTGATCTAACCGTGGATAAATGG 59.548 45.833 0.00 0.00 0.00 3.16
386 387 5.056480 TGCTGATCTAACCGTGGATAAATG 58.944 41.667 0.00 0.00 0.00 2.32
387 388 5.290493 TGCTGATCTAACCGTGGATAAAT 57.710 39.130 0.00 0.00 0.00 1.40
388 389 4.442893 CCTGCTGATCTAACCGTGGATAAA 60.443 45.833 0.00 0.00 0.00 1.40
389 390 3.069586 CCTGCTGATCTAACCGTGGATAA 59.930 47.826 0.00 0.00 0.00 1.75
390 391 2.628178 CCTGCTGATCTAACCGTGGATA 59.372 50.000 0.00 0.00 0.00 2.59
391 392 1.414181 CCTGCTGATCTAACCGTGGAT 59.586 52.381 0.00 0.00 0.00 3.41
392 393 0.824109 CCTGCTGATCTAACCGTGGA 59.176 55.000 0.00 0.00 0.00 4.02
393 394 0.179073 CCCTGCTGATCTAACCGTGG 60.179 60.000 0.00 0.00 0.00 4.94
394 395 0.824109 TCCCTGCTGATCTAACCGTG 59.176 55.000 0.00 0.00 0.00 4.94
395 396 1.414181 CATCCCTGCTGATCTAACCGT 59.586 52.381 0.00 0.00 0.00 4.83
396 397 1.875576 GCATCCCTGCTGATCTAACCG 60.876 57.143 0.00 0.00 45.32 4.44
397 398 1.889545 GCATCCCTGCTGATCTAACC 58.110 55.000 0.00 0.00 45.32 2.85
422 423 3.181443 ACCCAATTCCCTCGGCTATTTAG 60.181 47.826 0.00 0.00 0.00 1.85
423 424 2.781174 ACCCAATTCCCTCGGCTATTTA 59.219 45.455 0.00 0.00 0.00 1.40
424 425 1.569072 ACCCAATTCCCTCGGCTATTT 59.431 47.619 0.00 0.00 0.00 1.40
425 426 1.222567 ACCCAATTCCCTCGGCTATT 58.777 50.000 0.00 0.00 0.00 1.73
426 427 1.697982 GTACCCAATTCCCTCGGCTAT 59.302 52.381 0.00 0.00 0.00 2.97
427 428 1.125633 GTACCCAATTCCCTCGGCTA 58.874 55.000 0.00 0.00 0.00 3.93
428 429 0.912487 TGTACCCAATTCCCTCGGCT 60.912 55.000 0.00 0.00 0.00 5.52
429 430 0.746923 GTGTACCCAATTCCCTCGGC 60.747 60.000 0.00 0.00 0.00 5.54
430 431 0.616371 TGTGTACCCAATTCCCTCGG 59.384 55.000 0.00 0.00 0.00 4.63
431 432 2.288666 CATGTGTACCCAATTCCCTCG 58.711 52.381 0.00 0.00 0.00 4.63
432 433 3.279434 GACATGTGTACCCAATTCCCTC 58.721 50.000 1.15 0.00 0.00 4.30
433 434 2.025321 GGACATGTGTACCCAATTCCCT 60.025 50.000 1.15 0.00 0.00 4.20
434 435 2.375146 GGACATGTGTACCCAATTCCC 58.625 52.381 1.15 0.00 0.00 3.97
435 436 2.014128 CGGACATGTGTACCCAATTCC 58.986 52.381 1.15 0.00 0.00 3.01
436 437 1.400494 GCGGACATGTGTACCCAATTC 59.600 52.381 1.15 0.00 0.00 2.17
437 438 1.459450 GCGGACATGTGTACCCAATT 58.541 50.000 1.15 0.00 0.00 2.32
438 439 0.393808 GGCGGACATGTGTACCCAAT 60.394 55.000 1.15 0.00 0.00 3.16
439 440 1.003112 GGCGGACATGTGTACCCAA 60.003 57.895 1.15 0.00 0.00 4.12
440 441 2.666207 GGCGGACATGTGTACCCA 59.334 61.111 1.15 0.00 0.00 4.51
441 442 2.306255 ATCGGCGGACATGTGTACCC 62.306 60.000 1.15 0.00 0.00 3.69
442 443 0.874607 GATCGGCGGACATGTGTACC 60.875 60.000 1.15 0.00 0.00 3.34
443 444 0.179121 TGATCGGCGGACATGTGTAC 60.179 55.000 1.15 0.00 0.00 2.90
444 445 0.750249 ATGATCGGCGGACATGTGTA 59.250 50.000 1.15 0.00 0.00 2.90
445 446 0.107703 AATGATCGGCGGACATGTGT 60.108 50.000 1.15 3.31 0.00 3.72
446 447 0.583438 GAATGATCGGCGGACATGTG 59.417 55.000 1.15 0.00 0.00 3.21
447 448 0.177836 TGAATGATCGGCGGACATGT 59.822 50.000 16.92 0.00 0.00 3.21
448 449 1.262417 CTTGAATGATCGGCGGACATG 59.738 52.381 16.92 0.00 0.00 3.21
449 450 1.586422 CTTGAATGATCGGCGGACAT 58.414 50.000 7.21 10.42 0.00 3.06
450 451 0.461870 CCTTGAATGATCGGCGGACA 60.462 55.000 7.21 8.29 0.00 4.02
451 452 0.179084 TCCTTGAATGATCGGCGGAC 60.179 55.000 7.21 1.77 0.00 4.79
452 453 0.539518 TTCCTTGAATGATCGGCGGA 59.460 50.000 7.21 0.00 0.00 5.54
453 454 1.532868 GATTCCTTGAATGATCGGCGG 59.467 52.381 7.21 0.00 31.89 6.13
454 455 2.487934 AGATTCCTTGAATGATCGGCG 58.512 47.619 0.00 0.00 31.89 6.46
455 456 4.261363 GGAAAGATTCCTTGAATGATCGGC 60.261 45.833 1.86 0.00 46.57 5.54
456 457 5.429957 GGAAAGATTCCTTGAATGATCGG 57.570 43.478 1.86 0.00 46.57 4.18
485 486 4.222847 GATCGGGGGACGTGGCTC 62.223 72.222 0.00 0.00 44.69 4.70
486 487 4.779733 AGATCGGGGGACGTGGCT 62.780 66.667 0.00 0.00 44.69 4.75
487 488 4.530857 CAGATCGGGGGACGTGGC 62.531 72.222 0.00 0.00 44.69 5.01
488 489 1.686325 AATCAGATCGGGGGACGTGG 61.686 60.000 0.00 0.00 44.69 4.94
489 490 0.178068 AAATCAGATCGGGGGACGTG 59.822 55.000 0.00 0.00 44.69 4.49
490 491 0.178068 CAAATCAGATCGGGGGACGT 59.822 55.000 0.00 0.00 44.69 4.34
491 492 0.464036 TCAAATCAGATCGGGGGACG 59.536 55.000 0.00 0.00 46.11 4.79
492 493 2.710096 TTCAAATCAGATCGGGGGAC 57.290 50.000 0.00 0.00 0.00 4.46
493 494 3.951563 AATTCAAATCAGATCGGGGGA 57.048 42.857 0.00 0.00 0.00 4.81
494 495 3.821033 GGTAATTCAAATCAGATCGGGGG 59.179 47.826 0.00 0.00 0.00 5.40
495 496 3.821033 GGGTAATTCAAATCAGATCGGGG 59.179 47.826 0.00 0.00 0.00 5.73
496 497 4.460263 TGGGTAATTCAAATCAGATCGGG 58.540 43.478 0.00 0.00 0.00 5.14
497 498 5.221048 GGTTGGGTAATTCAAATCAGATCGG 60.221 44.000 0.00 0.00 0.00 4.18
498 499 5.356751 TGGTTGGGTAATTCAAATCAGATCG 59.643 40.000 0.00 0.00 0.00 3.69
499 500 6.564328 GTGGTTGGGTAATTCAAATCAGATC 58.436 40.000 0.00 0.00 0.00 2.75
500 501 5.125417 CGTGGTTGGGTAATTCAAATCAGAT 59.875 40.000 0.00 0.00 0.00 2.90
501 502 4.457603 CGTGGTTGGGTAATTCAAATCAGA 59.542 41.667 0.00 0.00 0.00 3.27
502 503 4.732784 CGTGGTTGGGTAATTCAAATCAG 58.267 43.478 0.00 0.00 0.00 2.90
503 504 3.057174 GCGTGGTTGGGTAATTCAAATCA 60.057 43.478 0.00 0.00 0.00 2.57
504 505 3.057174 TGCGTGGTTGGGTAATTCAAATC 60.057 43.478 0.00 0.00 0.00 2.17
505 506 2.894126 TGCGTGGTTGGGTAATTCAAAT 59.106 40.909 0.00 0.00 0.00 2.32
506 507 2.307768 TGCGTGGTTGGGTAATTCAAA 58.692 42.857 0.00 0.00 0.00 2.69
507 508 1.982660 TGCGTGGTTGGGTAATTCAA 58.017 45.000 0.00 0.00 0.00 2.69
508 509 1.815613 CATGCGTGGTTGGGTAATTCA 59.184 47.619 0.00 0.00 0.00 2.57
509 510 1.816224 ACATGCGTGGTTGGGTAATTC 59.184 47.619 11.36 0.00 0.00 2.17
510 511 1.543802 CACATGCGTGGTTGGGTAATT 59.456 47.619 11.36 0.00 39.64 1.40
511 512 1.173043 CACATGCGTGGTTGGGTAAT 58.827 50.000 11.36 0.00 39.64 1.89
512 513 1.519751 GCACATGCGTGGTTGGGTAA 61.520 55.000 11.36 0.00 43.81 2.85
513 514 1.969064 GCACATGCGTGGTTGGGTA 60.969 57.895 11.36 0.00 43.81 3.69
514 515 3.294493 GCACATGCGTGGTTGGGT 61.294 61.111 11.36 0.00 43.81 4.51
524 525 1.012841 GCTCCTGTTCTAGCACATGC 58.987 55.000 0.00 0.00 38.63 4.06
525 526 2.687700 AGCTCCTGTTCTAGCACATG 57.312 50.000 0.00 0.00 41.32 3.21
526 527 6.463614 CCTTATTAGCTCCTGTTCTAGCACAT 60.464 42.308 0.00 0.00 41.32 3.21
527 528 5.163405 CCTTATTAGCTCCTGTTCTAGCACA 60.163 44.000 0.00 0.00 41.32 4.57
528 529 5.069251 TCCTTATTAGCTCCTGTTCTAGCAC 59.931 44.000 0.00 0.00 41.32 4.40
529 530 5.208890 TCCTTATTAGCTCCTGTTCTAGCA 58.791 41.667 0.00 0.00 41.32 3.49
530 531 5.778862 CTCCTTATTAGCTCCTGTTCTAGC 58.221 45.833 0.00 0.00 39.08 3.42
531 532 5.563867 CGCTCCTTATTAGCTCCTGTTCTAG 60.564 48.000 0.00 0.00 37.85 2.43
532 533 4.278669 CGCTCCTTATTAGCTCCTGTTCTA 59.721 45.833 0.00 0.00 37.85 2.10
533 534 3.068873 CGCTCCTTATTAGCTCCTGTTCT 59.931 47.826 0.00 0.00 37.85 3.01
534 535 3.385577 CGCTCCTTATTAGCTCCTGTTC 58.614 50.000 0.00 0.00 37.85 3.18
535 536 2.483889 GCGCTCCTTATTAGCTCCTGTT 60.484 50.000 0.00 0.00 37.85 3.16
536 537 1.069358 GCGCTCCTTATTAGCTCCTGT 59.931 52.381 0.00 0.00 37.85 4.00
537 538 1.069204 TGCGCTCCTTATTAGCTCCTG 59.931 52.381 9.73 0.00 37.85 3.86
538 539 1.342819 CTGCGCTCCTTATTAGCTCCT 59.657 52.381 9.73 0.00 37.85 3.69
539 540 1.606737 CCTGCGCTCCTTATTAGCTCC 60.607 57.143 9.73 0.00 37.85 4.70
540 541 1.069358 ACCTGCGCTCCTTATTAGCTC 59.931 52.381 9.73 0.00 37.85 4.09
541 542 1.069358 GACCTGCGCTCCTTATTAGCT 59.931 52.381 9.73 0.00 37.85 3.32
542 543 1.503294 GACCTGCGCTCCTTATTAGC 58.497 55.000 9.73 0.00 36.60 3.09
543 544 1.772182 CGACCTGCGCTCCTTATTAG 58.228 55.000 9.73 0.00 0.00 1.73
544 545 3.959478 CGACCTGCGCTCCTTATTA 57.041 52.632 9.73 0.00 0.00 0.98
545 546 4.835927 CGACCTGCGCTCCTTATT 57.164 55.556 9.73 0.00 0.00 1.40
568 569 2.924922 TAAACGATCGACGCGGCTCC 62.925 60.000 24.34 0.00 46.94 4.70
569 570 1.584483 TAAACGATCGACGCGGCTC 60.584 57.895 24.34 0.00 46.94 4.70
570 571 1.870901 GTAAACGATCGACGCGGCT 60.871 57.895 24.34 0.00 46.94 5.52
571 572 1.477030 ATGTAAACGATCGACGCGGC 61.477 55.000 24.34 6.41 46.94 6.53
572 573 0.918619 AATGTAAACGATCGACGCGG 59.081 50.000 24.34 0.00 46.94 6.46
573 574 1.072348 GGAATGTAAACGATCGACGCG 60.072 52.381 24.34 3.53 46.94 6.01
574 575 1.921887 TGGAATGTAAACGATCGACGC 59.078 47.619 24.34 9.25 46.94 5.19
576 577 4.421948 AGAGTGGAATGTAAACGATCGAC 58.578 43.478 24.34 10.46 0.00 4.20
577 578 4.439700 GGAGAGTGGAATGTAAACGATCGA 60.440 45.833 24.34 0.00 0.00 3.59
578 579 3.797256 GGAGAGTGGAATGTAAACGATCG 59.203 47.826 14.88 14.88 0.00 3.69
579 580 4.120589 GGGAGAGTGGAATGTAAACGATC 58.879 47.826 0.00 0.00 0.00 3.69
580 581 3.118371 GGGGAGAGTGGAATGTAAACGAT 60.118 47.826 0.00 0.00 0.00 3.73
581 582 2.235402 GGGGAGAGTGGAATGTAAACGA 59.765 50.000 0.00 0.00 0.00 3.85
582 583 2.236395 AGGGGAGAGTGGAATGTAAACG 59.764 50.000 0.00 0.00 0.00 3.60
583 584 3.679083 CGAGGGGAGAGTGGAATGTAAAC 60.679 52.174 0.00 0.00 0.00 2.01
584 585 2.500098 CGAGGGGAGAGTGGAATGTAAA 59.500 50.000 0.00 0.00 0.00 2.01
585 586 2.108168 CGAGGGGAGAGTGGAATGTAA 58.892 52.381 0.00 0.00 0.00 2.41
586 587 1.776662 CGAGGGGAGAGTGGAATGTA 58.223 55.000 0.00 0.00 0.00 2.29
587 588 1.617947 GCGAGGGGAGAGTGGAATGT 61.618 60.000 0.00 0.00 0.00 2.71
588 589 1.144936 GCGAGGGGAGAGTGGAATG 59.855 63.158 0.00 0.00 0.00 2.67
589 590 2.066999 GGCGAGGGGAGAGTGGAAT 61.067 63.158 0.00 0.00 0.00 3.01
590 591 2.683933 GGCGAGGGGAGAGTGGAA 60.684 66.667 0.00 0.00 0.00 3.53
618 619 4.988598 CTGAACGCTGCCGGTGGT 62.989 66.667 1.90 0.00 39.22 4.16
621 622 4.704833 ATGCTGAACGCTGCCGGT 62.705 61.111 1.90 0.00 40.11 5.28
622 623 4.170062 CATGCTGAACGCTGCCGG 62.170 66.667 0.00 0.00 40.11 6.13
623 624 4.170062 CCATGCTGAACGCTGCCG 62.170 66.667 0.00 0.00 40.11 5.69
624 625 3.818787 CCCATGCTGAACGCTGCC 61.819 66.667 0.00 0.00 40.11 4.85
625 626 2.533391 GAACCCATGCTGAACGCTGC 62.533 60.000 0.00 0.00 40.11 5.25
626 627 1.503542 GAACCCATGCTGAACGCTG 59.496 57.895 0.00 0.00 40.11 5.18
627 628 1.675641 GGAACCCATGCTGAACGCT 60.676 57.895 0.00 0.00 40.11 5.07
628 629 2.877691 GGAACCCATGCTGAACGC 59.122 61.111 0.00 0.00 39.77 4.84
629 630 1.375396 TCGGAACCCATGCTGAACG 60.375 57.895 0.00 0.00 0.00 3.95
630 631 0.321653 AGTCGGAACCCATGCTGAAC 60.322 55.000 0.00 0.00 0.00 3.18
631 632 0.400213 AAGTCGGAACCCATGCTGAA 59.600 50.000 0.00 0.00 0.00 3.02
632 633 0.036388 GAAGTCGGAACCCATGCTGA 60.036 55.000 0.00 0.00 0.00 4.26
633 634 0.321564 TGAAGTCGGAACCCATGCTG 60.322 55.000 0.00 0.00 0.00 4.41
634 635 0.400213 TTGAAGTCGGAACCCATGCT 59.600 50.000 0.00 0.00 0.00 3.79
635 636 0.804989 CTTGAAGTCGGAACCCATGC 59.195 55.000 0.00 0.00 0.00 4.06
636 637 1.453155 CCTTGAAGTCGGAACCCATG 58.547 55.000 0.00 0.00 0.00 3.66
637 638 0.322546 GCCTTGAAGTCGGAACCCAT 60.323 55.000 0.00 0.00 0.00 4.00
638 639 1.072505 GCCTTGAAGTCGGAACCCA 59.927 57.895 0.00 0.00 0.00 4.51
639 640 1.674651 GGCCTTGAAGTCGGAACCC 60.675 63.158 0.00 0.00 0.00 4.11
640 641 0.322546 ATGGCCTTGAAGTCGGAACC 60.323 55.000 3.32 0.00 0.00 3.62
641 642 1.087501 GATGGCCTTGAAGTCGGAAC 58.912 55.000 3.32 0.00 0.00 3.62
642 643 0.035439 GGATGGCCTTGAAGTCGGAA 60.035 55.000 3.32 0.00 0.00 4.30
643 644 1.602237 GGATGGCCTTGAAGTCGGA 59.398 57.895 3.32 0.00 0.00 4.55
644 645 1.452108 GGGATGGCCTTGAAGTCGG 60.452 63.158 3.32 0.00 0.00 4.79
645 646 1.815421 CGGGATGGCCTTGAAGTCG 60.815 63.158 3.32 0.00 0.00 4.18
646 647 2.115291 GCGGGATGGCCTTGAAGTC 61.115 63.158 3.32 0.00 0.00 3.01
647 648 2.044946 GCGGGATGGCCTTGAAGT 60.045 61.111 3.32 0.00 0.00 3.01
648 649 1.821332 GAGCGGGATGGCCTTGAAG 60.821 63.158 3.32 0.00 0.00 3.02
649 650 2.272146 GAGCGGGATGGCCTTGAA 59.728 61.111 3.32 0.00 0.00 2.69
650 651 4.161295 CGAGCGGGATGGCCTTGA 62.161 66.667 3.32 0.00 0.00 3.02
651 652 4.473520 ACGAGCGGGATGGCCTTG 62.474 66.667 3.32 0.00 0.00 3.61
652 653 4.162690 GACGAGCGGGATGGCCTT 62.163 66.667 3.32 0.00 0.00 4.35
675 676 0.245539 TTGACTGGTAGCGTGCCTAC 59.754 55.000 0.00 0.00 44.66 3.18
676 677 1.136305 GATTGACTGGTAGCGTGCCTA 59.864 52.381 0.00 0.00 0.00 3.93
677 678 0.108138 GATTGACTGGTAGCGTGCCT 60.108 55.000 0.00 0.00 0.00 4.75
678 679 0.391130 TGATTGACTGGTAGCGTGCC 60.391 55.000 0.00 0.00 0.00 5.01
679 680 1.438651 TTGATTGACTGGTAGCGTGC 58.561 50.000 0.00 0.00 0.00 5.34
680 681 2.805671 TGTTTGATTGACTGGTAGCGTG 59.194 45.455 0.00 0.00 0.00 5.34
681 682 3.067106 CTGTTTGATTGACTGGTAGCGT 58.933 45.455 0.00 0.00 0.00 5.07
682 683 2.159653 GCTGTTTGATTGACTGGTAGCG 60.160 50.000 0.00 0.00 0.00 4.26
683 684 2.162408 GGCTGTTTGATTGACTGGTAGC 59.838 50.000 0.00 0.00 0.00 3.58
684 685 2.749621 GGGCTGTTTGATTGACTGGTAG 59.250 50.000 0.00 0.00 0.00 3.18
685 686 2.790433 GGGCTGTTTGATTGACTGGTA 58.210 47.619 0.00 0.00 0.00 3.25
686 687 1.620822 GGGCTGTTTGATTGACTGGT 58.379 50.000 0.00 0.00 0.00 4.00
687 688 0.523072 CGGGCTGTTTGATTGACTGG 59.477 55.000 0.00 0.00 0.00 4.00
688 689 1.069022 CACGGGCTGTTTGATTGACTG 60.069 52.381 0.00 0.00 0.00 3.51
689 690 1.202758 TCACGGGCTGTTTGATTGACT 60.203 47.619 0.00 0.00 0.00 3.41
690 691 1.234821 TCACGGGCTGTTTGATTGAC 58.765 50.000 0.00 0.00 0.00 3.18
691 692 1.974265 TTCACGGGCTGTTTGATTGA 58.026 45.000 0.00 0.00 0.00 2.57
692 693 2.228582 TGATTCACGGGCTGTTTGATTG 59.771 45.455 0.00 0.00 0.00 2.67
693 694 2.513753 TGATTCACGGGCTGTTTGATT 58.486 42.857 0.00 0.00 0.00 2.57
694 695 2.198827 TGATTCACGGGCTGTTTGAT 57.801 45.000 0.00 0.00 0.00 2.57
695 696 1.606668 GTTGATTCACGGGCTGTTTGA 59.393 47.619 0.00 0.00 0.00 2.69
696 697 1.335872 GGTTGATTCACGGGCTGTTTG 60.336 52.381 0.00 0.00 0.00 2.93
697 698 0.958822 GGTTGATTCACGGGCTGTTT 59.041 50.000 0.00 0.00 0.00 2.83
698 699 1.234615 CGGTTGATTCACGGGCTGTT 61.235 55.000 0.00 0.00 0.00 3.16
699 700 1.671054 CGGTTGATTCACGGGCTGT 60.671 57.895 0.00 0.00 0.00 4.40
700 701 2.398554 CCGGTTGATTCACGGGCTG 61.399 63.158 7.62 0.00 43.69 4.85
701 702 2.046314 CCGGTTGATTCACGGGCT 60.046 61.111 7.62 0.00 43.69 5.19
705 706 5.556470 CAATTACTTACCGGTTGATTCACG 58.444 41.667 15.04 0.00 0.00 4.35
706 707 5.123344 AGCAATTACTTACCGGTTGATTCAC 59.877 40.000 15.04 0.00 0.00 3.18
707 708 5.250200 AGCAATTACTTACCGGTTGATTCA 58.750 37.500 15.04 0.00 0.00 2.57
708 709 5.353123 TGAGCAATTACTTACCGGTTGATTC 59.647 40.000 15.04 5.37 0.00 2.52
709 710 5.250200 TGAGCAATTACTTACCGGTTGATT 58.750 37.500 15.04 0.00 0.00 2.57
710 711 4.839121 TGAGCAATTACTTACCGGTTGAT 58.161 39.130 15.04 0.00 0.00 2.57
711 712 4.274602 TGAGCAATTACTTACCGGTTGA 57.725 40.909 15.04 0.23 0.00 3.18
712 713 4.876107 AGATGAGCAATTACTTACCGGTTG 59.124 41.667 15.04 9.32 0.00 3.77
713 714 5.099042 AGATGAGCAATTACTTACCGGTT 57.901 39.130 15.04 0.00 0.00 4.44
714 715 4.755266 AGATGAGCAATTACTTACCGGT 57.245 40.909 13.98 13.98 0.00 5.28
715 716 5.462398 GTGTAGATGAGCAATTACTTACCGG 59.538 44.000 0.00 0.00 0.00 5.28
716 717 6.273825 AGTGTAGATGAGCAATTACTTACCG 58.726 40.000 0.00 0.00 0.00 4.02
717 718 6.702282 GGAGTGTAGATGAGCAATTACTTACC 59.298 42.308 0.00 0.00 0.00 2.85
718 719 6.418226 CGGAGTGTAGATGAGCAATTACTTAC 59.582 42.308 0.00 0.00 0.00 2.34
719 720 6.504398 CGGAGTGTAGATGAGCAATTACTTA 58.496 40.000 0.00 0.00 0.00 2.24
720 721 5.352284 CGGAGTGTAGATGAGCAATTACTT 58.648 41.667 0.00 0.00 0.00 2.24
721 722 4.737946 GCGGAGTGTAGATGAGCAATTACT 60.738 45.833 0.00 0.00 0.00 2.24
722 723 3.491267 GCGGAGTGTAGATGAGCAATTAC 59.509 47.826 0.00 0.00 0.00 1.89
723 724 3.132111 TGCGGAGTGTAGATGAGCAATTA 59.868 43.478 0.00 0.00 0.00 1.40
724 725 2.093500 TGCGGAGTGTAGATGAGCAATT 60.093 45.455 0.00 0.00 0.00 2.32
725 726 1.482182 TGCGGAGTGTAGATGAGCAAT 59.518 47.619 0.00 0.00 0.00 3.56
726 727 0.894835 TGCGGAGTGTAGATGAGCAA 59.105 50.000 0.00 0.00 0.00 3.91
727 728 0.173481 GTGCGGAGTGTAGATGAGCA 59.827 55.000 0.00 0.00 0.00 4.26
728 729 0.867753 CGTGCGGAGTGTAGATGAGC 60.868 60.000 0.00 0.00 0.00 4.26
729 730 0.867753 GCGTGCGGAGTGTAGATGAG 60.868 60.000 0.00 0.00 0.00 2.90
730 731 1.138883 GCGTGCGGAGTGTAGATGA 59.861 57.895 0.00 0.00 0.00 2.92
731 732 0.528466 ATGCGTGCGGAGTGTAGATG 60.528 55.000 0.00 0.00 0.00 2.90
732 733 0.175760 AATGCGTGCGGAGTGTAGAT 59.824 50.000 0.00 0.00 0.00 1.98
733 734 0.735978 CAATGCGTGCGGAGTGTAGA 60.736 55.000 5.45 0.00 0.00 2.59
734 735 1.014044 ACAATGCGTGCGGAGTGTAG 61.014 55.000 16.44 0.00 42.43 2.74
735 736 0.601576 AACAATGCGTGCGGAGTGTA 60.602 50.000 17.98 0.00 43.34 2.90
736 737 1.841663 GAACAATGCGTGCGGAGTGT 61.842 55.000 12.80 12.80 45.81 3.55
737 738 1.154413 GAACAATGCGTGCGGAGTG 60.154 57.895 11.51 11.51 37.54 3.51
738 739 1.568612 CTGAACAATGCGTGCGGAGT 61.569 55.000 0.00 0.00 29.58 3.85
739 740 1.133253 CTGAACAATGCGTGCGGAG 59.867 57.895 0.00 0.00 29.58 4.63
740 741 1.301322 TCTGAACAATGCGTGCGGA 60.301 52.632 0.00 0.00 36.04 5.54
741 742 1.154413 GTCTGAACAATGCGTGCGG 60.154 57.895 0.00 0.00 0.00 5.69
742 743 0.166597 ATGTCTGAACAATGCGTGCG 59.833 50.000 0.00 0.00 39.30 5.34
743 744 1.197492 TGATGTCTGAACAATGCGTGC 59.803 47.619 0.00 0.00 39.30 5.34
744 745 2.726989 GCTGATGTCTGAACAATGCGTG 60.727 50.000 0.00 0.00 39.30 5.34
745 746 1.466167 GCTGATGTCTGAACAATGCGT 59.534 47.619 0.00 0.00 39.30 5.24
746 747 1.528400 CGCTGATGTCTGAACAATGCG 60.528 52.381 0.00 0.00 41.83 4.73
747 748 1.792993 GCGCTGATGTCTGAACAATGC 60.793 52.381 0.00 0.00 39.30 3.56
748 749 1.528400 CGCGCTGATGTCTGAACAATG 60.528 52.381 5.56 0.00 39.30 2.82
749 750 0.723414 CGCGCTGATGTCTGAACAAT 59.277 50.000 5.56 0.00 39.30 2.71
750 751 1.900585 GCGCGCTGATGTCTGAACAA 61.901 55.000 26.67 0.00 39.30 2.83
751 752 2.382746 GCGCGCTGATGTCTGAACA 61.383 57.895 26.67 0.00 40.38 3.18
752 753 2.018582 GAGCGCGCTGATGTCTGAAC 62.019 60.000 41.82 16.43 0.00 3.18
753 754 1.807165 GAGCGCGCTGATGTCTGAA 60.807 57.895 41.82 0.00 0.00 3.02
754 755 2.202663 GAGCGCGCTGATGTCTGA 60.203 61.111 41.82 0.00 0.00 3.27
755 756 3.614659 CGAGCGCGCTGATGTCTG 61.615 66.667 41.82 15.60 0.00 3.51
756 757 4.121669 ACGAGCGCGCTGATGTCT 62.122 61.111 41.82 13.69 42.48 3.41
757 758 3.906649 CACGAGCGCGCTGATGTC 61.907 66.667 41.82 23.06 42.48 3.06
760 761 4.862092 CTCCACGAGCGCGCTGAT 62.862 66.667 41.82 23.82 42.48 2.90
763 764 4.785512 CTTCTCCACGAGCGCGCT 62.786 66.667 37.28 37.28 42.48 5.92
765 766 4.421479 ACCTTCTCCACGAGCGCG 62.421 66.667 8.75 8.75 44.79 6.86
766 767 2.507324 GACCTTCTCCACGAGCGC 60.507 66.667 0.00 0.00 0.00 5.92
767 768 2.202492 CGACCTTCTCCACGAGCG 60.202 66.667 0.00 0.00 0.00 5.03
768 769 1.153997 GTCGACCTTCTCCACGAGC 60.154 63.158 3.51 0.00 35.52 5.03
769 770 1.134901 CGTCGACCTTCTCCACGAG 59.865 63.158 10.58 0.00 35.52 4.18
770 771 0.675837 ATCGTCGACCTTCTCCACGA 60.676 55.000 10.58 0.84 43.15 4.35
771 772 0.248134 GATCGTCGACCTTCTCCACG 60.248 60.000 10.58 0.00 0.00 4.94
772 773 0.100861 GGATCGTCGACCTTCTCCAC 59.899 60.000 10.58 0.00 0.00 4.02
773 774 1.374343 CGGATCGTCGACCTTCTCCA 61.374 60.000 10.58 0.00 0.00 3.86
774 775 1.355916 CGGATCGTCGACCTTCTCC 59.644 63.158 10.58 9.75 0.00 3.71
775 776 1.355916 CCGGATCGTCGACCTTCTC 59.644 63.158 10.58 1.52 0.00 2.87
776 777 2.119655 CCCGGATCGTCGACCTTCT 61.120 63.158 10.58 0.00 0.00 2.85
777 778 2.412112 CCCGGATCGTCGACCTTC 59.588 66.667 10.58 6.91 0.00 3.46
778 779 3.834799 GCCCGGATCGTCGACCTT 61.835 66.667 10.58 0.00 0.00 3.50
780 781 3.912907 ATGCCCGGATCGTCGACC 61.913 66.667 10.58 0.17 0.00 4.79
781 782 2.658593 CATGCCCGGATCGTCGAC 60.659 66.667 0.73 5.18 0.00 4.20
782 783 3.911698 CCATGCCCGGATCGTCGA 61.912 66.667 0.73 0.00 0.00 4.20
801 802 2.971428 AATATCAGCCCACGTCGCCG 62.971 60.000 0.56 0.00 40.83 6.46
802 803 0.814010 AAATATCAGCCCACGTCGCC 60.814 55.000 0.56 0.00 0.00 5.54
803 804 1.014352 AAAATATCAGCCCACGTCGC 58.986 50.000 0.00 0.00 0.00 5.19
822 823 6.426937 GCTGAGTGGTCATTACTAGTGAAAAA 59.573 38.462 5.39 0.00 30.18 1.94
823 824 5.932303 GCTGAGTGGTCATTACTAGTGAAAA 59.068 40.000 5.39 0.00 30.18 2.29
824 825 5.246203 AGCTGAGTGGTCATTACTAGTGAAA 59.754 40.000 5.39 0.00 30.18 2.69
825 826 4.772624 AGCTGAGTGGTCATTACTAGTGAA 59.227 41.667 5.39 0.00 30.18 3.18
826 827 4.344978 AGCTGAGTGGTCATTACTAGTGA 58.655 43.478 5.39 0.00 30.18 3.41
827 828 4.158579 TGAGCTGAGTGGTCATTACTAGTG 59.841 45.833 5.39 0.00 46.77 2.74
828 829 4.344978 TGAGCTGAGTGGTCATTACTAGT 58.655 43.478 0.00 0.00 46.77 2.57
829 830 4.991153 TGAGCTGAGTGGTCATTACTAG 57.009 45.455 0.00 0.00 46.77 2.57
929 935 6.163476 TCACTAGTAATGACCACAATCACAC 58.837 40.000 0.00 0.00 0.00 3.82
1219 1569 5.933463 CAGAGAAGAAAAGCAGAGTGAGATT 59.067 40.000 0.00 0.00 0.00 2.40
1402 2814 7.427214 GCCTACAGTTTAACAAAATGGTGTTA 58.573 34.615 0.00 0.00 41.84 2.41
1406 2851 5.144832 AGGCCTACAGTTTAACAAAATGGT 58.855 37.500 1.29 0.00 40.51 3.55
1524 3108 2.159170 CGCAGAGGGAACAAACCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
1525 3109 1.407258 CGCAGAGGGAACAAACCAAAA 59.593 47.619 0.00 0.00 0.00 2.44
1652 3616 2.159114 ACCAATGTTGCACACAAAGGTC 60.159 45.455 15.94 0.00 40.74 3.85
1661 3625 1.000060 AGCATGTCACCAATGTTGCAC 60.000 47.619 0.00 0.00 32.99 4.57
1832 5009 4.341520 AGATACACGGTAATGAAGGGAGTC 59.658 45.833 0.00 0.00 0.00 3.36
1867 5044 9.594478 TTTTGTTGATGAATAGATAGCTCGTAA 57.406 29.630 0.00 0.00 0.00 3.18
1944 5123 7.210174 AGAAAAGAATTTGAGTACAAAAGGCC 58.790 34.615 0.00 0.00 46.77 5.19
1951 5130 8.227791 GCGACATAAGAAAAGAATTTGAGTACA 58.772 33.333 0.00 0.00 39.02 2.90
1967 5146 6.385649 TGACTGTATATGTGCGACATAAGA 57.614 37.500 11.35 3.12 43.50 2.10
2137 5342 6.872628 ATCAATACATCGAGATTGCACAAT 57.127 33.333 10.94 0.00 33.82 2.71
2138 5343 6.291067 GATCAATACATCGAGATTGCACAA 57.709 37.500 10.94 0.00 33.82 3.33
2219 5424 2.539081 GGGCCCACCTCCTGTTTCT 61.539 63.158 19.95 0.00 35.85 2.52
2860 6065 0.690762 AGTACCGAGTTGTGGCCAAT 59.309 50.000 7.24 0.00 32.11 3.16
2870 6075 1.749638 CGGAGGCTGAGTACCGAGT 60.750 63.158 5.72 0.00 46.94 4.18
2997 6202 0.249238 CTACTCCGATGCAGAGTGGC 60.249 60.000 15.36 0.00 44.25 5.01
3001 6206 1.365633 GGCCTACTCCGATGCAGAG 59.634 63.158 0.00 0.00 37.39 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.