Multiple sequence alignment - TraesCS7A01G440200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G440200 chr7A 100.000 6782 0 0 1 6782 634923215 634916434 0.000000e+00 12525.0
1 TraesCS7A01G440200 chr7A 89.346 1361 101 20 3353 4695 634871390 634872724 0.000000e+00 1670.0
2 TraesCS7A01G440200 chr7A 86.408 1339 129 21 815 2137 634869922 634871223 0.000000e+00 1415.0
3 TraesCS7A01G440200 chr7A 85.609 1216 135 19 3492 4695 634875280 634876467 0.000000e+00 1240.0
4 TraesCS7A01G440200 chr7A 84.564 1043 139 11 1080 2119 634873639 634874662 0.000000e+00 1014.0
5 TraesCS7A01G440200 chr7A 86.033 852 107 6 4750 5601 634872746 634873585 0.000000e+00 904.0
6 TraesCS7A01G440200 chr7A 83.954 966 107 27 4750 5711 634876489 634877410 0.000000e+00 881.0
7 TraesCS7A01G440200 chr7A 90.265 113 9 2 2196 2307 634874897 634875008 5.480000e-31 147.0
8 TraesCS7A01G440200 chr7B 91.460 3103 196 28 2902 5966 593414450 593411379 0.000000e+00 4198.0
9 TraesCS7A01G440200 chr7B 90.071 1541 77 32 461 1995 593417101 593415631 0.000000e+00 1929.0
10 TraesCS7A01G440200 chr7B 88.987 1353 117 19 3353 4702 593402704 593404027 0.000000e+00 1644.0
11 TraesCS7A01G440200 chr7B 91.269 1214 93 6 3494 4695 593286509 593287721 0.000000e+00 1642.0
12 TraesCS7A01G440200 chr7B 79.710 2070 329 62 3497 5529 593636264 593638279 0.000000e+00 1411.0
13 TraesCS7A01G440200 chr7B 85.939 1273 117 34 1039 2307 593401460 593402674 0.000000e+00 1303.0
14 TraesCS7A01G440200 chr7B 83.791 1166 150 23 1148 2307 593259516 593260648 0.000000e+00 1070.0
15 TraesCS7A01G440200 chr7B 84.995 953 129 7 1040 1990 593635052 593635992 0.000000e+00 955.0
16 TraesCS7A01G440200 chr7B 84.375 960 115 27 4754 5705 593404043 593404975 0.000000e+00 909.0
17 TraesCS7A01G440200 chr7B 83.284 1023 114 26 4752 5770 593287745 593288714 0.000000e+00 889.0
18 TraesCS7A01G440200 chr7B 93.968 315 12 3 6047 6356 593411382 593411070 2.860000e-128 470.0
19 TraesCS7A01G440200 chr7B 93.396 106 7 0 1045 1150 593194573 593194678 2.530000e-34 158.0
20 TraesCS7A01G440200 chr7D 91.319 2062 111 25 3082 5101 549304445 549302410 0.000000e+00 2754.0
21 TraesCS7A01G440200 chr7D 94.020 1271 63 5 5092 6356 549302389 549301126 0.000000e+00 1914.0
22 TraesCS7A01G440200 chr7D 92.997 1171 67 5 827 1995 549307194 549306037 0.000000e+00 1694.0
23 TraesCS7A01G440200 chr7D 88.562 1224 132 5 3492 4710 549295843 549297063 0.000000e+00 1478.0
24 TraesCS7A01G440200 chr7D 88.445 952 91 7 1043 1992 549294354 549295288 0.000000e+00 1131.0
25 TraesCS7A01G440200 chr7D 86.893 885 106 9 2193 3071 549305644 549304764 0.000000e+00 983.0
26 TraesCS7A01G440200 chr7D 81.212 1155 139 39 4750 5878 549297070 549298172 0.000000e+00 859.0
27 TraesCS7A01G440200 chr7D 82.043 969 143 21 2400 3345 24969174 24968214 0.000000e+00 797.0
28 TraesCS7A01G440200 chr7D 82.242 794 127 12 2308 3093 554849801 554849014 0.000000e+00 673.0
29 TraesCS7A01G440200 chr7D 89.294 411 40 3 1 408 549308007 549307598 4.690000e-141 512.0
30 TraesCS7A01G440200 chr7D 89.310 290 10 10 392 676 549307581 549307308 1.810000e-90 344.0
31 TraesCS7A01G440200 chr7D 74.587 303 63 9 3048 3344 15110134 15110428 3.320000e-23 121.0
32 TraesCS7A01G440200 chr7D 84.058 69 7 4 3690 3756 59906612 59906546 5.680000e-06 63.9
33 TraesCS7A01G440200 chr7D 96.875 32 1 0 5873 5904 549301514 549301483 3.000000e-03 54.7
34 TraesCS7A01G440200 chr5A 82.131 901 145 12 2307 3196 4076675 4077570 0.000000e+00 758.0
35 TraesCS7A01G440200 chr5A 90.114 263 25 1 6505 6766 690841255 690841517 2.340000e-89 340.0
36 TraesCS7A01G440200 chr4A 82.080 904 143 15 2307 3196 17882956 17883854 0.000000e+00 754.0
37 TraesCS7A01G440200 chr4A 92.857 42 3 0 6356 6397 266952724 266952683 2.040000e-05 62.1
38 TraesCS7A01G440200 chr1D 98.082 417 7 1 6356 6771 468439989 468440405 0.000000e+00 725.0
39 TraesCS7A01G440200 chr1A 81.564 895 150 13 2312 3196 336461213 336460324 0.000000e+00 725.0
40 TraesCS7A01G440200 chr1A 92.537 268 17 3 6505 6771 288120463 288120198 1.380000e-101 381.0
41 TraesCS7A01G440200 chr1A 91.720 157 11 2 6356 6511 288120662 288120507 4.120000e-52 217.0
42 TraesCS7A01G440200 chr1A 82.716 81 10 2 3216 3294 336460280 336460202 1.220000e-07 69.4
43 TraesCS7A01G440200 chrUn 81.894 834 133 14 2324 3144 28740454 28739626 0.000000e+00 688.0
44 TraesCS7A01G440200 chr3B 82.353 799 120 17 2310 3094 51163969 51164760 0.000000e+00 675.0
45 TraesCS7A01G440200 chr3B 82.328 464 50 21 229 676 578274504 578274951 2.310000e-99 374.0
46 TraesCS7A01G440200 chr3B 81.356 236 34 6 3015 3241 682815081 682814847 4.180000e-42 183.0
47 TraesCS7A01G440200 chr6A 81.965 804 128 13 2307 3094 493327772 493328574 0.000000e+00 665.0
48 TraesCS7A01G440200 chr6A 82.589 448 64 11 5916 6356 797460 797020 3.840000e-102 383.0
49 TraesCS7A01G440200 chr3D 83.617 470 46 22 229 676 441123571 441124031 4.890000e-111 412.0
50 TraesCS7A01G440200 chr3D 78.851 383 54 14 6378 6740 42792208 42792583 4.090000e-57 233.0
51 TraesCS7A01G440200 chr6B 91.418 268 19 3 6505 6771 663097770 663098034 1.390000e-96 364.0
52 TraesCS7A01G440200 chr6B 81.473 448 66 14 5916 6354 4491925 4491486 1.080000e-92 351.0
53 TraesCS7A01G440200 chr4D 87.732 269 20 6 6505 6771 353176430 353176173 1.110000e-77 302.0
54 TraesCS7A01G440200 chr2D 79.318 440 56 17 5922 6351 617537982 617537568 6.700000e-70 276.0
55 TraesCS7A01G440200 chr6D 82.807 285 33 10 5916 6189 2101589 2101868 2.440000e-59 241.0
56 TraesCS7A01G440200 chr2B 88.542 192 19 2 5918 6107 773347959 773348149 5.290000e-56 230.0
57 TraesCS7A01G440200 chr2B 74.390 246 53 8 1083 1323 798159202 798158962 5.600000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G440200 chr7A 634916434 634923215 6781 True 12525.000000 12525 100.000000 1 6782 1 chr7A.!!$R1 6781
1 TraesCS7A01G440200 chr7A 634869922 634877410 7488 False 1038.714286 1670 86.597000 815 5711 7 chr7A.!!$F1 4896
2 TraesCS7A01G440200 chr7B 593411070 593417101 6031 True 2199.000000 4198 91.833000 461 6356 3 chr7B.!!$R1 5895
3 TraesCS7A01G440200 chr7B 593401460 593404975 3515 False 1285.333333 1644 86.433667 1039 5705 3 chr7B.!!$F4 4666
4 TraesCS7A01G440200 chr7B 593286509 593288714 2205 False 1265.500000 1642 87.276500 3494 5770 2 chr7B.!!$F3 2276
5 TraesCS7A01G440200 chr7B 593635052 593638279 3227 False 1183.000000 1411 82.352500 1040 5529 2 chr7B.!!$F5 4489
6 TraesCS7A01G440200 chr7B 593259516 593260648 1132 False 1070.000000 1070 83.791000 1148 2307 1 chr7B.!!$F2 1159
7 TraesCS7A01G440200 chr7D 549301126 549308007 6881 True 1179.385714 2754 91.529714 1 6356 7 chr7D.!!$R4 6355
8 TraesCS7A01G440200 chr7D 549294354 549298172 3818 False 1156.000000 1478 86.073000 1043 5878 3 chr7D.!!$F2 4835
9 TraesCS7A01G440200 chr7D 24968214 24969174 960 True 797.000000 797 82.043000 2400 3345 1 chr7D.!!$R1 945
10 TraesCS7A01G440200 chr7D 554849014 554849801 787 True 673.000000 673 82.242000 2308 3093 1 chr7D.!!$R3 785
11 TraesCS7A01G440200 chr5A 4076675 4077570 895 False 758.000000 758 82.131000 2307 3196 1 chr5A.!!$F1 889
12 TraesCS7A01G440200 chr4A 17882956 17883854 898 False 754.000000 754 82.080000 2307 3196 1 chr4A.!!$F1 889
13 TraesCS7A01G440200 chr1A 336460202 336461213 1011 True 397.200000 725 82.140000 2312 3294 2 chr1A.!!$R2 982
14 TraesCS7A01G440200 chrUn 28739626 28740454 828 True 688.000000 688 81.894000 2324 3144 1 chrUn.!!$R1 820
15 TraesCS7A01G440200 chr3B 51163969 51164760 791 False 675.000000 675 82.353000 2310 3094 1 chr3B.!!$F1 784
16 TraesCS7A01G440200 chr6A 493327772 493328574 802 False 665.000000 665 81.965000 2307 3094 1 chr6A.!!$F1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 786 0.034089 ATTTGCACAGGGTAGCCTCC 60.034 55.000 11.47 3.16 0.00 4.30 F
1030 1147 0.107410 TCCGCCAACAGTGTTTGACT 60.107 50.000 11.10 0.00 34.02 3.41 F
2748 3273 0.802607 GCCACTGCTACTAGTCACGC 60.803 60.000 0.00 1.40 33.53 5.34 F
2825 3355 0.320683 TCAGCCACCATGACGTTCTG 60.321 55.000 0.00 0.00 0.00 3.02 F
2844 3374 1.089920 GCGCCACTGTCTTCATCATT 58.910 50.000 0.00 0.00 0.00 2.57 F
2921 3453 1.227664 CCCTCCTGGAGCTACTCGA 59.772 63.158 18.51 0.00 35.39 4.04 F
4851 5937 1.070175 CAAACTGTTGGTCGGCTAACG 60.070 52.381 11.77 8.84 46.11 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 2953 0.104855 GTCATCACTGCAGCGGGATA 59.895 55.000 15.27 1.96 0.00 2.59 R
2764 3289 0.533085 ATCGAGTCGAGGCGATGAGA 60.533 55.000 21.36 0.00 44.64 3.27 R
4547 5624 1.199624 GTTTGAAAGCACTGGCAACG 58.800 50.000 0.00 0.00 44.61 4.10 R
4791 5874 1.348036 GTTCTGCCCAAGTCCAGTACT 59.652 52.381 0.00 0.00 41.49 2.73 R
4835 5921 1.225376 TTGCGTTAGCCGACCAACAG 61.225 55.000 0.00 0.00 44.33 3.16 R
4920 6006 1.974236 AGGTGCAACTGTAGCTCTTCT 59.026 47.619 1.66 0.00 33.29 2.85 R
6685 11602 0.033699 ATGCCTTGCCTCTCCCTTTC 60.034 55.000 0.00 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.147824 CCTAGTGGCAGCATCCCTG 59.852 63.158 0.00 0.00 44.67 4.45
30 31 1.147824 CTAGTGGCAGCATCCCTGG 59.852 63.158 0.00 0.00 42.03 4.45
32 33 1.207488 TAGTGGCAGCATCCCTGGTT 61.207 55.000 0.00 0.00 42.03 3.67
33 34 1.207488 AGTGGCAGCATCCCTGGTTA 61.207 55.000 0.00 0.00 42.03 2.85
38 39 2.171003 GCAGCATCCCTGGTTAAGTTT 58.829 47.619 0.00 0.00 42.03 2.66
39 40 2.094545 GCAGCATCCCTGGTTAAGTTTG 60.095 50.000 0.00 0.00 42.03 2.93
61 62 0.096976 CGTGGCAAATAAGGAGCACG 59.903 55.000 0.00 0.00 0.00 5.34
84 86 1.534175 GGGAATAGCGTGTCTCTGACG 60.534 57.143 0.00 0.00 39.87 4.35
88 90 0.240145 TAGCGTGTCTCTGACGTTGG 59.760 55.000 0.00 0.00 39.08 3.77
96 98 1.613928 TCTGACGTTGGGGCCCATA 60.614 57.895 29.34 14.87 31.53 2.74
105 107 2.976882 GTTGGGGCCCATACATAGTCTA 59.023 50.000 29.34 3.63 31.53 2.59
108 110 3.182152 GGGGCCCATACATAGTCTACAT 58.818 50.000 26.86 0.00 0.00 2.29
112 114 4.286032 GGCCCATACATAGTCTACATCCAA 59.714 45.833 0.00 0.00 0.00 3.53
113 115 5.221843 GGCCCATACATAGTCTACATCCAAA 60.222 44.000 0.00 0.00 0.00 3.28
114 116 6.296026 GCCCATACATAGTCTACATCCAAAA 58.704 40.000 0.00 0.00 0.00 2.44
115 117 6.770785 GCCCATACATAGTCTACATCCAAAAA 59.229 38.462 0.00 0.00 0.00 1.94
174 178 2.490148 CGCTGTCGCCCTCCATCTA 61.490 63.158 0.00 0.00 0.00 1.98
199 203 3.200593 CCGCCTGCAGCTAGCTTG 61.201 66.667 16.46 11.95 45.94 4.01
208 212 2.439156 GCTAGCTTGGTGCCCCAG 60.439 66.667 7.70 0.00 43.15 4.45
223 227 3.625897 CAGGAGTCCGCCACCACA 61.626 66.667 2.76 0.00 0.00 4.17
224 228 3.626924 AGGAGTCCGCCACCACAC 61.627 66.667 2.76 0.00 0.00 3.82
225 229 4.699522 GGAGTCCGCCACCACACC 62.700 72.222 0.00 0.00 0.00 4.16
243 247 1.334054 CCGTTCGTCGACCTACAAAG 58.666 55.000 10.58 0.56 42.86 2.77
247 251 3.374745 GTTCGTCGACCTACAAAGACAA 58.625 45.455 10.58 0.00 33.56 3.18
288 292 0.886563 AACGAGACGGTAGGGTGAAG 59.113 55.000 0.00 0.00 0.00 3.02
289 293 0.964358 ACGAGACGGTAGGGTGAAGG 60.964 60.000 0.00 0.00 0.00 3.46
302 306 1.687840 TGAAGGCGGCTAAGGGCTA 60.688 57.895 13.71 0.00 39.67 3.93
311 315 2.510613 GGCTAAGGGCTAAACACAACA 58.489 47.619 0.00 0.00 41.46 3.33
333 337 5.239525 ACAAGGTCTCTTTGTTTAGCACATC 59.760 40.000 0.00 0.00 34.43 3.06
340 344 1.990799 TGTTTAGCACATCTCCGTCG 58.009 50.000 0.00 0.00 0.00 5.12
356 360 2.601763 CCGTCGCCACAAGACTAAATAC 59.398 50.000 0.00 0.00 36.53 1.89
362 366 4.441634 CGCCACAAGACTAAATACCTAGCT 60.442 45.833 0.00 0.00 0.00 3.32
438 477 3.629058 TCGCGAAGATTCACACTATAGC 58.371 45.455 6.20 0.00 0.00 2.97
439 478 3.066203 TCGCGAAGATTCACACTATAGCA 59.934 43.478 6.20 0.00 0.00 3.49
440 479 3.423536 CGCGAAGATTCACACTATAGCAG 59.576 47.826 0.00 0.00 0.00 4.24
441 480 3.183373 GCGAAGATTCACACTATAGCAGC 59.817 47.826 0.00 0.00 0.00 5.25
442 481 4.363138 CGAAGATTCACACTATAGCAGCA 58.637 43.478 0.00 0.00 0.00 4.41
443 482 4.443725 CGAAGATTCACACTATAGCAGCAG 59.556 45.833 0.00 0.00 0.00 4.24
573 612 1.075151 GGAACCCAACCCAACCCAA 60.075 57.895 0.00 0.00 0.00 4.12
574 613 1.404479 GGAACCCAACCCAACCCAAC 61.404 60.000 0.00 0.00 0.00 3.77
575 614 1.383386 AACCCAACCCAACCCAACC 60.383 57.895 0.00 0.00 0.00 3.77
576 615 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
577 616 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
578 617 1.383248 CCAACCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
579 618 1.691195 CCAACCCAACCCAACCCAAC 61.691 60.000 0.00 0.00 0.00 3.77
580 619 1.383386 AACCCAACCCAACCCAACC 60.383 57.895 0.00 0.00 0.00 3.77
581 620 2.525629 CCCAACCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
582 621 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
731 773 1.855213 GCCGAGCAGACACATTTGCA 61.855 55.000 0.00 0.00 42.67 4.08
743 785 1.098050 CATTTGCACAGGGTAGCCTC 58.902 55.000 11.47 0.21 0.00 4.70
744 786 0.034089 ATTTGCACAGGGTAGCCTCC 60.034 55.000 11.47 3.16 0.00 4.30
745 787 1.133809 TTTGCACAGGGTAGCCTCCT 61.134 55.000 11.47 0.00 34.39 3.69
746 788 1.133809 TTGCACAGGGTAGCCTCCTT 61.134 55.000 11.47 0.00 31.06 3.36
747 789 1.078143 GCACAGGGTAGCCTCCTTG 60.078 63.158 11.47 9.77 39.90 3.61
768 834 3.550431 TGCTATCTGCTCCGCCCC 61.550 66.667 0.00 0.00 43.37 5.80
769 835 3.237741 GCTATCTGCTCCGCCCCT 61.238 66.667 0.00 0.00 38.95 4.79
770 836 3.055580 CTATCTGCTCCGCCCCTC 58.944 66.667 0.00 0.00 0.00 4.30
772 838 1.075226 TATCTGCTCCGCCCCTCTT 60.075 57.895 0.00 0.00 0.00 2.85
774 840 4.168291 CTGCTCCGCCCCTCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
775 841 4.722535 TGCTCCGCCCCTCTTCCT 62.723 66.667 0.00 0.00 0.00 3.36
776 842 3.855853 GCTCCGCCCCTCTTCCTC 61.856 72.222 0.00 0.00 0.00 3.71
777 843 3.157949 CTCCGCCCCTCTTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
778 844 4.798682 TCCGCCCCTCTTCCTCCC 62.799 72.222 0.00 0.00 0.00 4.30
781 847 3.093172 GCCCCTCTTCCTCCCCAG 61.093 72.222 0.00 0.00 0.00 4.45
794 860 3.174987 CCCAGTCCCCACCACACA 61.175 66.667 0.00 0.00 0.00 3.72
798 864 1.383943 AGTCCCCACCACACACTCA 60.384 57.895 0.00 0.00 0.00 3.41
799 865 1.227853 GTCCCCACCACACACTCAC 60.228 63.158 0.00 0.00 0.00 3.51
800 866 1.690985 TCCCCACCACACACTCACA 60.691 57.895 0.00 0.00 0.00 3.58
801 867 1.525995 CCCCACCACACACTCACAC 60.526 63.158 0.00 0.00 0.00 3.82
802 868 1.223211 CCCACCACACACTCACACA 59.777 57.895 0.00 0.00 0.00 3.72
835 901 4.641645 CGCTCCTGCCCACCACAA 62.642 66.667 0.00 0.00 35.36 3.33
935 1042 3.129502 CCGCCGTCGTCTCCACTA 61.130 66.667 0.00 0.00 0.00 2.74
936 1043 2.478890 CCGCCGTCGTCTCCACTAT 61.479 63.158 0.00 0.00 0.00 2.12
937 1044 1.298413 CGCCGTCGTCTCCACTATG 60.298 63.158 0.00 0.00 0.00 2.23
938 1045 1.712018 CGCCGTCGTCTCCACTATGA 61.712 60.000 0.00 0.00 0.00 2.15
939 1046 0.248539 GCCGTCGTCTCCACTATGAC 60.249 60.000 0.00 0.00 0.00 3.06
940 1047 1.092348 CCGTCGTCTCCACTATGACA 58.908 55.000 0.00 0.00 33.34 3.58
941 1048 1.202154 CCGTCGTCTCCACTATGACAC 60.202 57.143 0.00 0.00 33.34 3.67
942 1049 1.202154 CGTCGTCTCCACTATGACACC 60.202 57.143 0.00 0.00 33.34 4.16
943 1050 1.134560 GTCGTCTCCACTATGACACCC 59.865 57.143 0.00 0.00 33.83 4.61
944 1051 0.460311 CGTCTCCACTATGACACCCC 59.540 60.000 0.00 0.00 33.18 4.95
945 1052 0.831307 GTCTCCACTATGACACCCCC 59.169 60.000 0.00 0.00 33.75 5.40
946 1053 0.716591 TCTCCACTATGACACCCCCT 59.283 55.000 0.00 0.00 0.00 4.79
947 1054 1.123928 CTCCACTATGACACCCCCTC 58.876 60.000 0.00 0.00 0.00 4.30
948 1055 0.326238 TCCACTATGACACCCCCTCC 60.326 60.000 0.00 0.00 0.00 4.30
949 1056 0.620410 CCACTATGACACCCCCTCCA 60.620 60.000 0.00 0.00 0.00 3.86
950 1057 0.833287 CACTATGACACCCCCTCCAG 59.167 60.000 0.00 0.00 0.00 3.86
951 1058 0.983378 ACTATGACACCCCCTCCAGC 60.983 60.000 0.00 0.00 0.00 4.85
952 1059 1.692749 TATGACACCCCCTCCAGCC 60.693 63.158 0.00 0.00 0.00 4.85
980 1087 3.174265 GCCCCCTCCAGGATCCAG 61.174 72.222 15.82 5.70 38.24 3.86
982 1089 3.174265 CCCCTCCAGGATCCAGCC 61.174 72.222 15.82 0.00 38.24 4.85
986 1093 1.525923 CTCCAGGATCCAGCCACTG 59.474 63.158 15.82 1.58 0.00 3.66
987 1094 0.979709 CTCCAGGATCCAGCCACTGA 60.980 60.000 15.82 0.00 32.44 3.41
1002 1109 1.742880 CTGACTCCACCACCGCATG 60.743 63.158 0.00 0.00 0.00 4.06
1030 1147 0.107410 TCCGCCAACAGTGTTTGACT 60.107 50.000 11.10 0.00 34.02 3.41
1032 1149 1.134175 CCGCCAACAGTGTTTGACTTT 59.866 47.619 11.10 0.00 29.75 2.66
1033 1150 2.184448 CGCCAACAGTGTTTGACTTTG 58.816 47.619 11.10 0.00 29.75 2.77
1035 1152 3.179048 GCCAACAGTGTTTGACTTTGAC 58.821 45.455 11.10 0.00 29.75 3.18
1037 1154 3.119990 CCAACAGTGTTTGACTTTGACGT 60.120 43.478 5.57 0.00 29.75 4.34
1329 1450 2.482664 CGAGATGGAGGATGTGGTTGAG 60.483 54.545 0.00 0.00 0.00 3.02
1525 1646 5.812127 CGGTACAAGATTGATGATGTTGAGA 59.188 40.000 0.00 0.00 40.49 3.27
1531 1652 6.981762 AGATTGATGATGTTGAGACAACTC 57.018 37.500 14.19 10.11 39.66 3.01
1532 1653 6.709281 AGATTGATGATGTTGAGACAACTCT 58.291 36.000 14.19 5.06 42.99 3.24
1533 1654 7.845037 AGATTGATGATGTTGAGACAACTCTA 58.155 34.615 14.19 3.30 42.99 2.43
1652 1782 1.964552 CTAATCAAGAGGCTGGCAGG 58.035 55.000 17.64 0.00 0.00 4.85
1661 1794 1.751927 GGCTGGCAGGTGAAGATGG 60.752 63.158 17.64 0.00 0.00 3.51
1728 1864 1.239347 GAGGACTTGGCAAGACAACC 58.761 55.000 32.50 25.04 0.00 3.77
1822 1958 5.355596 AGCCTAATCTGAAGAATGTTCTCG 58.644 41.667 0.00 0.00 36.28 4.04
1943 2087 6.071984 ACAAGAGGTACCACTATCATCCTAG 58.928 44.000 15.94 0.00 0.00 3.02
1944 2088 4.668636 AGAGGTACCACTATCATCCTAGC 58.331 47.826 15.94 0.00 0.00 3.42
1945 2089 4.355588 AGAGGTACCACTATCATCCTAGCT 59.644 45.833 15.94 0.00 0.00 3.32
1946 2090 5.552371 AGAGGTACCACTATCATCCTAGCTA 59.448 44.000 15.94 0.00 0.00 3.32
1970 2114 2.556534 GCATGCTGCGAGAGATTTTT 57.443 45.000 11.37 0.00 31.71 1.94
1973 2117 3.427233 GCATGCTGCGAGAGATTTTTCTT 60.427 43.478 11.37 0.00 31.71 2.52
2036 2336 5.186198 AGCGCTCATAATAAAAAGTGAGGT 58.814 37.500 2.64 0.00 38.74 3.85
2054 2354 1.448985 GTAGAAATGGGCGCTTCACA 58.551 50.000 7.64 1.83 0.00 3.58
2076 2377 7.391275 TCACATTCTTGCAGATTTTCACATAGA 59.609 33.333 0.00 0.00 0.00 1.98
2098 2399 7.022055 AGATAAGATTCAGATAGTATCGGCG 57.978 40.000 0.00 0.00 0.00 6.46
2106 2407 4.212847 TCAGATAGTATCGGCGTACACTTC 59.787 45.833 6.85 8.88 0.00 3.01
2149 2480 9.725019 ATTCATTCCATTTACGCATAGATAAGA 57.275 29.630 0.00 0.00 0.00 2.10
2150 2481 9.725019 TTCATTCCATTTACGCATAGATAAGAT 57.275 29.630 0.00 0.00 0.00 2.40
2151 2482 9.725019 TCATTCCATTTACGCATAGATAAGATT 57.275 29.630 0.00 0.00 0.00 2.40
2155 2486 9.653287 TCCATTTACGCATAGATAAGATTTAGG 57.347 33.333 0.00 0.00 0.00 2.69
2156 2487 9.436957 CCATTTACGCATAGATAAGATTTAGGT 57.563 33.333 0.00 0.00 0.00 3.08
2163 2494 9.653067 CGCATAGATAAGATTTAGGTAGTATCG 57.347 37.037 0.00 0.00 0.00 2.92
2164 2495 9.953697 GCATAGATAAGATTTAGGTAGTATCGG 57.046 37.037 0.00 0.00 0.00 4.18
2165 2496 9.953697 CATAGATAAGATTTAGGTAGTATCGGC 57.046 37.037 0.00 0.00 0.00 5.54
2166 2497 7.086230 AGATAAGATTTAGGTAGTATCGGCG 57.914 40.000 0.00 0.00 0.00 6.46
2167 2498 6.658391 AGATAAGATTTAGGTAGTATCGGCGT 59.342 38.462 6.85 0.00 0.00 5.68
2168 2499 7.826252 AGATAAGATTTAGGTAGTATCGGCGTA 59.174 37.037 6.85 0.00 0.00 4.42
2169 2500 5.619625 AGATTTAGGTAGTATCGGCGTAC 57.380 43.478 6.85 9.07 0.00 3.67
2170 2501 5.065914 AGATTTAGGTAGTATCGGCGTACA 58.934 41.667 6.85 0.00 0.00 2.90
2171 2502 4.552166 TTTAGGTAGTATCGGCGTACAC 57.448 45.455 6.85 3.38 0.00 2.90
2175 2506 4.199310 AGGTAGTATCGGCGTACACTTAA 58.801 43.478 6.85 0.00 0.00 1.85
2220 2719 9.956720 GTTTACTATAGTATGTCCTTTAAGCGA 57.043 33.333 13.34 0.00 0.00 4.93
2241 2741 1.135083 CGGTGATAAAGAGTGAGGCGT 60.135 52.381 0.00 0.00 0.00 5.68
2249 2749 1.568504 AGAGTGAGGCGTAAATGGGA 58.431 50.000 0.00 0.00 0.00 4.37
2360 2862 9.922477 ATCACGGAGATATCAATTATACCTAGA 57.078 33.333 5.32 0.00 34.43 2.43
2391 2893 6.212888 ACAATGAAATGCCCTAAAGACATC 57.787 37.500 0.00 0.00 0.00 3.06
2396 2903 1.667236 TGCCCTAAAGACATCATGCG 58.333 50.000 0.00 0.00 0.00 4.73
2418 2927 2.808543 TGCACACAACCCAAAAACAAAC 59.191 40.909 0.00 0.00 0.00 2.93
2419 2928 2.160615 GCACACAACCCAAAAACAAACC 59.839 45.455 0.00 0.00 0.00 3.27
2423 2935 4.887655 ACACAACCCAAAAACAAACCAAAA 59.112 33.333 0.00 0.00 0.00 2.44
2481 2997 1.028905 TGTAACTGCAGCACAAACCC 58.971 50.000 15.27 0.00 0.00 4.11
2520 3038 4.321230 CCGAAGTCCAAATTCTCCAAAAGG 60.321 45.833 0.00 0.00 0.00 3.11
2536 3054 2.233305 AAGGGACGCCTCTAAGAAGA 57.767 50.000 0.00 0.00 0.00 2.87
2578 3096 5.419760 TCGTCGTTCGATCATAGATCTTT 57.580 39.130 0.00 0.00 44.01 2.52
2592 3114 2.893489 AGATCTTTGGTTTTCACCCTGC 59.107 45.455 0.00 0.00 43.49 4.85
2655 3179 5.295950 CATTGCCAGACACAACCAATTAAA 58.704 37.500 0.00 0.00 0.00 1.52
2664 3188 3.320541 CACAACCAATTAAAGCCAGACCA 59.679 43.478 0.00 0.00 0.00 4.02
2711 3236 8.596781 AAGGCTATATACTCCTACTATGTTGG 57.403 38.462 0.00 0.00 0.00 3.77
2713 3238 6.608002 GGCTATATACTCCTACTATGTTGGCT 59.392 42.308 0.00 0.00 0.00 4.75
2740 3265 2.184020 TTGCCGATGCCACTGCTACT 62.184 55.000 0.00 0.00 38.71 2.57
2748 3273 0.802607 GCCACTGCTACTAGTCACGC 60.803 60.000 0.00 1.40 33.53 5.34
2759 3284 1.390123 CTAGTCACGCATCACCAAACG 59.610 52.381 0.00 0.00 0.00 3.60
2799 3327 2.628178 CTCGATCCACCATTACTAGGCA 59.372 50.000 0.00 0.00 0.00 4.75
2825 3355 0.320683 TCAGCCACCATGACGTTCTG 60.321 55.000 0.00 0.00 0.00 3.02
2844 3374 1.089920 GCGCCACTGTCTTCATCATT 58.910 50.000 0.00 0.00 0.00 2.57
2863 3394 6.344572 TCATTGAAATCGAAATACCGACAG 57.655 37.500 0.00 0.00 41.70 3.51
2879 3410 3.433598 CCGACAGGTCCCATAATGTCAAT 60.434 47.826 8.47 0.00 41.67 2.57
2915 3447 1.915769 GTCACACCCTCCTGGAGCT 60.916 63.158 18.51 2.19 38.00 4.09
2921 3453 1.227664 CCCTCCTGGAGCTACTCGA 59.772 63.158 18.51 0.00 35.39 4.04
2956 3489 1.675714 GCACACGACTGAATCCCATCA 60.676 52.381 0.00 0.00 0.00 3.07
2994 3634 1.308069 CGTCAAGCACCCAATGGAGG 61.308 60.000 0.00 0.00 34.81 4.30
3046 3687 2.012902 GCCAGATCAATGTGGGCTGC 62.013 60.000 8.14 0.00 41.25 5.25
3204 4185 3.578272 GCACAACCGTCGCCACAA 61.578 61.111 0.00 0.00 0.00 3.33
3211 4192 3.708734 CGTCGCCACAACGTTCCC 61.709 66.667 0.00 0.00 35.47 3.97
3212 4193 3.351416 GTCGCCACAACGTTCCCC 61.351 66.667 0.00 0.00 0.00 4.81
3214 4195 4.939368 CGCCACAACGTTCCCCCA 62.939 66.667 0.00 0.00 0.00 4.96
3320 4318 2.751436 TTTGCTCGCCATGCTCCC 60.751 61.111 0.00 0.00 0.00 4.30
3364 4382 4.161377 GGGGTACATGTTTTACCTACGGTA 59.839 45.833 14.48 0.00 39.30 4.02
3520 4563 6.095440 ACCTTGCATGTATTTTGATAGTGTCC 59.905 38.462 0.00 0.00 0.00 4.02
3529 4572 8.274322 TGTATTTTGATAGTGTCCTCCATTCAT 58.726 33.333 0.00 0.00 0.00 2.57
3644 4692 7.398618 TGCCATATTTCTTTTATTTCCAGGACA 59.601 33.333 0.00 0.00 0.00 4.02
3699 4761 3.685550 GCTGCCATGTCAATAGGTACCTT 60.686 47.826 22.11 5.20 0.00 3.50
3705 4767 7.236640 TGCCATGTCAATAGGTACCTTATCATA 59.763 37.037 22.11 0.00 0.00 2.15
3752 4814 9.071276 GAGTTCATGGGATATAATCAAATGTGT 57.929 33.333 0.00 0.00 0.00 3.72
3822 4884 2.071778 TTGAAGTGGCAAAAGAGGCT 57.928 45.000 0.00 0.00 34.73 4.58
3855 4917 3.117888 ACAAGCAAGAACCTCTTTCTCCA 60.118 43.478 0.00 0.00 44.41 3.86
3888 4950 7.278646 TCGAAGGAATTGTTCTGTATGAGATTG 59.721 37.037 0.00 0.00 0.00 2.67
3909 4971 5.275067 TGTCTATTGGCAAAAGCAAAAGT 57.725 34.783 3.01 0.00 0.00 2.66
4050 5112 5.130477 TGGGGTCTATGACTCTATTGGTTTC 59.870 44.000 0.00 0.00 32.87 2.78
4267 5335 5.622346 ATTTGAGGTTGGAGAGAGATACC 57.378 43.478 0.00 0.00 0.00 2.73
4284 5352 6.015519 AGAGATACCTCAACATGCTCATAGAC 60.016 42.308 0.00 0.00 41.87 2.59
4438 5512 2.244695 TGACATCTCCACGTACCACTT 58.755 47.619 0.00 0.00 0.00 3.16
4449 5523 2.227388 ACGTACCACTTCTCGTAGGTTG 59.773 50.000 0.00 0.00 35.62 3.77
4465 5539 6.829298 TCGTAGGTTGGCCATAAATAATGAAA 59.171 34.615 6.09 0.00 37.86 2.69
4488 5565 3.831333 TCATAGAGCAGGATGGATCTGTC 59.169 47.826 0.00 0.00 34.86 3.51
4547 5624 3.435671 GCCACCATGTGTCACTTTAGTAC 59.564 47.826 4.27 0.00 0.00 2.73
4555 5632 3.183775 GTGTCACTTTAGTACGTTGCCAG 59.816 47.826 0.00 0.00 0.00 4.85
4791 5874 6.882768 ATAGGGGATTTATGGTTTTTGCAA 57.117 33.333 0.00 0.00 0.00 4.08
4851 5937 1.070175 CAAACTGTTGGTCGGCTAACG 60.070 52.381 11.77 8.84 46.11 3.18
4920 6006 4.839121 ACTGCACGAATTTAACATCCCTA 58.161 39.130 0.00 0.00 0.00 3.53
5107 6226 1.466856 TACTTGTAGGCATCGACCGT 58.533 50.000 0.00 0.00 33.69 4.83
5118 9977 0.178987 ATCGACCGTATCCTCAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
5143 10002 1.204704 CCGATTACACTGGCTCTGTGA 59.795 52.381 15.54 0.00 36.91 3.58
5289 10148 2.024846 GGATATGGAGATCCTCGGGAGA 60.025 54.545 0.00 0.00 42.03 3.71
5310 10169 6.294176 GGAGATTCTCAGAGCTCATTACTCTC 60.294 46.154 17.77 17.37 42.62 3.20
5420 10279 7.849322 ATTTTAACCAACCCAGATTTGTACT 57.151 32.000 0.00 0.00 0.00 2.73
5563 10437 2.092646 GGCAACACTACCATGGGTATCA 60.093 50.000 18.09 0.00 37.56 2.15
5643 10517 2.242965 TGCAGTTGAGATCCATCCCAAT 59.757 45.455 0.00 0.00 27.30 3.16
5665 10539 0.608856 TCCCGCACTCAAGGTACGTA 60.609 55.000 0.00 0.00 33.22 3.57
5666 10540 0.457337 CCCGCACTCAAGGTACGTAC 60.457 60.000 17.56 17.56 33.22 3.67
5667 10541 0.795735 CCGCACTCAAGGTACGTACG 60.796 60.000 18.98 15.01 33.22 3.67
5668 10542 0.110056 CGCACTCAAGGTACGTACGT 60.110 55.000 25.98 25.98 30.73 3.57
5712 10586 6.092955 AGTTTCTTTCTCATGTACCGTACA 57.907 37.500 13.69 13.69 43.80 2.90
5730 10607 6.015180 ACCGTACATACTTGTAAAAGGAGACA 60.015 38.462 0.00 0.00 39.96 3.41
5752 10629 7.993183 AGACAAGTTTCTTTCTCATTTCACCTA 59.007 33.333 0.00 0.00 0.00 3.08
5817 10719 2.668457 CGTCTTGCACTCAATGTACCTC 59.332 50.000 0.00 0.00 0.00 3.85
5823 10725 3.187700 GCACTCAATGTACCTCTTACGG 58.812 50.000 0.00 0.00 32.71 4.02
5993 10905 5.277825 TCACGTGTTTTTGTGATTTCCATC 58.722 37.500 16.51 0.00 40.02 3.51
6007 10919 6.530534 GTGATTTCCATCTTCAGCTTCATTTG 59.469 38.462 0.00 0.00 0.00 2.32
6015 10927 4.758674 TCTTCAGCTTCATTTGACAGAAGG 59.241 41.667 0.00 0.00 41.13 3.46
6033 10945 1.698532 AGGAGGCCTTCATGCAGATAG 59.301 52.381 15.31 0.00 0.00 2.08
6122 11034 3.296322 TTTTTCATCCGCACCACATTC 57.704 42.857 0.00 0.00 0.00 2.67
6171 11083 3.386486 CCACTGCCGCTCGTATTTTATA 58.614 45.455 0.00 0.00 0.00 0.98
6258 11175 6.796705 TGTACTGTAGCTTTTAGGCTTTTC 57.203 37.500 0.00 0.00 42.97 2.29
6309 11226 9.101655 TGGTTTTACAACACTTCTAGTTAGTTC 57.898 33.333 0.00 0.00 34.15 3.01
6356 11273 6.486253 TTCTGCTCAAACATGAACATAGAC 57.514 37.500 0.00 0.00 0.00 2.59
6357 11274 5.798132 TCTGCTCAAACATGAACATAGACT 58.202 37.500 0.00 0.00 0.00 3.24
6358 11275 6.935167 TCTGCTCAAACATGAACATAGACTA 58.065 36.000 0.00 0.00 0.00 2.59
6359 11276 7.038048 TCTGCTCAAACATGAACATAGACTAG 58.962 38.462 0.00 0.00 0.00 2.57
6360 11277 6.935167 TGCTCAAACATGAACATAGACTAGA 58.065 36.000 0.00 0.00 0.00 2.43
6361 11278 7.559486 TGCTCAAACATGAACATAGACTAGAT 58.441 34.615 0.00 0.00 0.00 1.98
6362 11279 7.708322 TGCTCAAACATGAACATAGACTAGATC 59.292 37.037 0.00 0.00 0.00 2.75
6363 11280 7.708322 GCTCAAACATGAACATAGACTAGATCA 59.292 37.037 0.00 0.00 0.00 2.92
6364 11281 9.761504 CTCAAACATGAACATAGACTAGATCAT 57.238 33.333 0.00 3.00 0.00 2.45
6365 11282 9.755804 TCAAACATGAACATAGACTAGATCATC 57.244 33.333 0.00 0.00 0.00 2.92
6366 11283 8.697960 CAAACATGAACATAGACTAGATCATCG 58.302 37.037 0.00 4.81 0.00 3.84
6367 11284 7.517614 ACATGAACATAGACTAGATCATCGT 57.482 36.000 0.00 0.00 0.00 3.73
6368 11285 8.622948 ACATGAACATAGACTAGATCATCGTA 57.377 34.615 0.00 0.00 0.00 3.43
6369 11286 8.726068 ACATGAACATAGACTAGATCATCGTAG 58.274 37.037 0.00 0.00 0.00 3.51
6370 11287 7.674471 TGAACATAGACTAGATCATCGTAGG 57.326 40.000 0.00 0.00 0.00 3.18
6371 11288 6.149640 TGAACATAGACTAGATCATCGTAGGC 59.850 42.308 0.00 0.00 0.00 3.93
6372 11289 4.632251 ACATAGACTAGATCATCGTAGGCG 59.368 45.833 0.00 0.00 39.92 5.52
6373 11290 1.807742 AGACTAGATCATCGTAGGCGC 59.192 52.381 0.00 0.00 38.14 6.53
6374 11291 0.517755 ACTAGATCATCGTAGGCGCG 59.482 55.000 0.00 0.00 38.14 6.86
6375 11292 0.794981 CTAGATCATCGTAGGCGCGC 60.795 60.000 25.94 25.94 38.14 6.86
6376 11293 2.508755 TAGATCATCGTAGGCGCGCG 62.509 60.000 28.44 28.44 38.14 6.86
6377 11294 4.266070 ATCATCGTAGGCGCGCGT 62.266 61.111 32.35 30.14 38.14 6.01
6378 11295 3.768185 ATCATCGTAGGCGCGCGTT 62.768 57.895 32.36 21.28 38.14 4.84
6379 11296 4.265630 CATCGTAGGCGCGCGTTG 62.266 66.667 32.36 23.30 38.14 4.10
6393 11310 3.058160 GTTGCTGCGCCTGTCCAT 61.058 61.111 4.18 0.00 0.00 3.41
6394 11311 2.282391 TTGCTGCGCCTGTCCATT 60.282 55.556 4.18 0.00 0.00 3.16
6395 11312 1.902918 TTGCTGCGCCTGTCCATTT 60.903 52.632 4.18 0.00 0.00 2.32
6396 11313 1.462731 TTGCTGCGCCTGTCCATTTT 61.463 50.000 4.18 0.00 0.00 1.82
6397 11314 1.444895 GCTGCGCCTGTCCATTTTG 60.445 57.895 4.18 0.00 0.00 2.44
6398 11315 1.213537 CTGCGCCTGTCCATTTTGG 59.786 57.895 4.18 0.00 39.43 3.28
6399 11316 2.125952 GCGCCTGTCCATTTTGGC 60.126 61.111 0.00 0.00 37.47 4.52
6400 11317 2.929903 GCGCCTGTCCATTTTGGCA 61.930 57.895 0.00 0.00 45.13 4.92
6401 11318 1.213537 CGCCTGTCCATTTTGGCAG 59.786 57.895 0.00 9.58 45.13 4.85
6402 11319 1.526575 CGCCTGTCCATTTTGGCAGT 61.527 55.000 13.29 0.00 45.13 4.40
6403 11320 1.544724 GCCTGTCCATTTTGGCAGTA 58.455 50.000 13.29 0.00 44.34 2.74
6404 11321 2.102578 GCCTGTCCATTTTGGCAGTAT 58.897 47.619 13.29 0.00 44.34 2.12
6405 11322 3.287222 GCCTGTCCATTTTGGCAGTATA 58.713 45.455 13.29 0.00 44.34 1.47
6406 11323 3.699038 GCCTGTCCATTTTGGCAGTATAA 59.301 43.478 13.29 0.00 44.34 0.98
6407 11324 4.342092 GCCTGTCCATTTTGGCAGTATAAT 59.658 41.667 13.29 0.00 44.34 1.28
6408 11325 5.534654 GCCTGTCCATTTTGGCAGTATAATA 59.465 40.000 13.29 0.00 44.34 0.98
6409 11326 6.209391 GCCTGTCCATTTTGGCAGTATAATAT 59.791 38.462 13.29 0.00 44.34 1.28
6410 11327 7.255942 GCCTGTCCATTTTGGCAGTATAATATT 60.256 37.037 13.29 0.00 44.34 1.28
6411 11328 9.295825 CCTGTCCATTTTGGCAGTATAATATTA 57.704 33.333 13.29 0.00 38.86 0.98
6413 11330 9.860650 TGTCCATTTTGGCAGTATAATATTAGT 57.139 29.630 1.02 0.00 37.47 2.24
6516 11433 9.557061 AATCATCAGATATAATTCATCCGATGG 57.443 33.333 17.73 7.28 37.67 3.51
6517 11434 8.082672 TCATCAGATATAATTCATCCGATGGT 57.917 34.615 17.73 0.00 37.67 3.55
6518 11435 8.542926 TCATCAGATATAATTCATCCGATGGTT 58.457 33.333 17.73 6.81 37.67 3.67
6519 11436 9.170734 CATCAGATATAATTCATCCGATGGTTT 57.829 33.333 8.54 5.47 35.24 3.27
6520 11437 9.745018 ATCAGATATAATTCATCCGATGGTTTT 57.255 29.630 8.54 3.28 0.00 2.43
6521 11438 9.002600 TCAGATATAATTCATCCGATGGTTTTG 57.997 33.333 8.54 0.00 0.00 2.44
6522 11439 8.786898 CAGATATAATTCATCCGATGGTTTTGT 58.213 33.333 8.54 2.11 0.00 2.83
6525 11442 9.793259 ATATAATTCATCCGATGGTTTTGTACT 57.207 29.630 8.54 0.00 0.00 2.73
6526 11443 6.834168 AATTCATCCGATGGTTTTGTACTT 57.166 33.333 8.54 0.00 0.00 2.24
6527 11444 6.834168 ATTCATCCGATGGTTTTGTACTTT 57.166 33.333 8.54 0.00 0.00 2.66
6528 11445 6.642707 TTCATCCGATGGTTTTGTACTTTT 57.357 33.333 8.54 0.00 0.00 2.27
6529 11446 6.007936 TCATCCGATGGTTTTGTACTTTTG 57.992 37.500 8.54 0.00 0.00 2.44
6530 11447 5.533154 TCATCCGATGGTTTTGTACTTTTGT 59.467 36.000 8.54 0.00 0.00 2.83
6531 11448 5.176407 TCCGATGGTTTTGTACTTTTGTG 57.824 39.130 0.00 0.00 0.00 3.33
6532 11449 4.641094 TCCGATGGTTTTGTACTTTTGTGT 59.359 37.500 0.00 0.00 0.00 3.72
6533 11450 4.973663 CCGATGGTTTTGTACTTTTGTGTC 59.026 41.667 0.00 0.00 0.00 3.67
6534 11451 5.220970 CCGATGGTTTTGTACTTTTGTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
6535 11452 6.262601 CGATGGTTTTGTACTTTTGTGTCTT 58.737 36.000 0.00 0.00 0.00 3.01
6536 11453 6.750039 CGATGGTTTTGTACTTTTGTGTCTTT 59.250 34.615 0.00 0.00 0.00 2.52
6537 11454 7.274686 CGATGGTTTTGTACTTTTGTGTCTTTT 59.725 33.333 0.00 0.00 0.00 2.27
6538 11455 8.840833 ATGGTTTTGTACTTTTGTGTCTTTTT 57.159 26.923 0.00 0.00 0.00 1.94
6539 11456 9.930693 ATGGTTTTGTACTTTTGTGTCTTTTTA 57.069 25.926 0.00 0.00 0.00 1.52
6540 11457 9.930693 TGGTTTTGTACTTTTGTGTCTTTTTAT 57.069 25.926 0.00 0.00 0.00 1.40
6549 11466 8.166066 ACTTTTGTGTCTTTTTATTTTTGACGC 58.834 29.630 0.00 0.00 38.27 5.19
6550 11467 7.582435 TTTGTGTCTTTTTATTTTTGACGCA 57.418 28.000 0.00 0.00 43.43 5.24
6552 11469 7.215696 TGTGTCTTTTTATTTTTGACGCAAG 57.784 32.000 0.00 0.00 42.59 4.01
6553 11470 6.120157 GTGTCTTTTTATTTTTGACGCAAGC 58.880 36.000 0.00 0.00 45.62 4.01
6554 11471 5.807520 TGTCTTTTTATTTTTGACGCAAGCA 59.192 32.000 0.00 0.00 45.62 3.91
6555 11472 6.019961 TGTCTTTTTATTTTTGACGCAAGCAG 60.020 34.615 0.00 0.00 45.62 4.24
6556 11473 6.019881 GTCTTTTTATTTTTGACGCAAGCAGT 60.020 34.615 0.00 0.00 45.62 4.40
6557 11474 6.533367 TCTTTTTATTTTTGACGCAAGCAGTT 59.467 30.769 0.00 0.00 45.62 3.16
6558 11475 6.654793 TTTTATTTTTGACGCAAGCAGTTT 57.345 29.167 0.00 0.00 45.62 2.66
6559 11476 5.633996 TTATTTTTGACGCAAGCAGTTTG 57.366 34.783 0.00 0.00 45.62 2.93
6617 11534 9.959721 ATTTTCTGTACAAGTATGTTAGATGGT 57.040 29.630 0.00 0.00 41.05 3.55
6621 11538 9.470399 TCTGTACAAGTATGTTAGATGGTAAGA 57.530 33.333 0.00 0.00 41.05 2.10
6624 11541 9.530633 GTACAAGTATGTTAGATGGTAAGAAGG 57.469 37.037 0.00 0.00 41.05 3.46
6625 11542 8.147244 ACAAGTATGTTAGATGGTAAGAAGGT 57.853 34.615 0.00 0.00 35.91 3.50
6626 11543 8.603304 ACAAGTATGTTAGATGGTAAGAAGGTT 58.397 33.333 0.00 0.00 35.91 3.50
6627 11544 8.883731 CAAGTATGTTAGATGGTAAGAAGGTTG 58.116 37.037 0.00 0.00 0.00 3.77
6628 11545 7.565680 AGTATGTTAGATGGTAAGAAGGTTGG 58.434 38.462 0.00 0.00 0.00 3.77
6629 11546 5.836024 TGTTAGATGGTAAGAAGGTTGGT 57.164 39.130 0.00 0.00 0.00 3.67
6630 11547 6.938698 TGTTAGATGGTAAGAAGGTTGGTA 57.061 37.500 0.00 0.00 0.00 3.25
6631 11548 6.942976 TGTTAGATGGTAAGAAGGTTGGTAG 58.057 40.000 0.00 0.00 0.00 3.18
6632 11549 6.070424 TGTTAGATGGTAAGAAGGTTGGTAGG 60.070 42.308 0.00 0.00 0.00 3.18
6633 11550 4.436079 AGATGGTAAGAAGGTTGGTAGGT 58.564 43.478 0.00 0.00 0.00 3.08
6634 11551 4.850386 AGATGGTAAGAAGGTTGGTAGGTT 59.150 41.667 0.00 0.00 0.00 3.50
6635 11552 5.312443 AGATGGTAAGAAGGTTGGTAGGTTT 59.688 40.000 0.00 0.00 0.00 3.27
6636 11553 5.391577 TGGTAAGAAGGTTGGTAGGTTTT 57.608 39.130 0.00 0.00 0.00 2.43
6637 11554 5.134661 TGGTAAGAAGGTTGGTAGGTTTTG 58.865 41.667 0.00 0.00 0.00 2.44
6638 11555 5.104024 TGGTAAGAAGGTTGGTAGGTTTTGA 60.104 40.000 0.00 0.00 0.00 2.69
6639 11556 6.008331 GGTAAGAAGGTTGGTAGGTTTTGAT 58.992 40.000 0.00 0.00 0.00 2.57
6640 11557 6.492429 GGTAAGAAGGTTGGTAGGTTTTGATT 59.508 38.462 0.00 0.00 0.00 2.57
6641 11558 7.014905 GGTAAGAAGGTTGGTAGGTTTTGATTT 59.985 37.037 0.00 0.00 0.00 2.17
6642 11559 7.432148 AAGAAGGTTGGTAGGTTTTGATTTT 57.568 32.000 0.00 0.00 0.00 1.82
6643 11560 6.816136 AGAAGGTTGGTAGGTTTTGATTTTG 58.184 36.000 0.00 0.00 0.00 2.44
6644 11561 6.382859 AGAAGGTTGGTAGGTTTTGATTTTGT 59.617 34.615 0.00 0.00 0.00 2.83
6645 11562 6.553953 AGGTTGGTAGGTTTTGATTTTGTT 57.446 33.333 0.00 0.00 0.00 2.83
6646 11563 6.953101 AGGTTGGTAGGTTTTGATTTTGTTT 58.047 32.000 0.00 0.00 0.00 2.83
6647 11564 7.398829 AGGTTGGTAGGTTTTGATTTTGTTTT 58.601 30.769 0.00 0.00 0.00 2.43
6648 11565 8.541234 AGGTTGGTAGGTTTTGATTTTGTTTTA 58.459 29.630 0.00 0.00 0.00 1.52
6649 11566 9.332502 GGTTGGTAGGTTTTGATTTTGTTTTAT 57.667 29.630 0.00 0.00 0.00 1.40
6684 11601 4.906618 GTTTCTAAACCATGGGAGAGACA 58.093 43.478 18.09 5.31 32.82 3.41
6685 11602 4.826274 TTCTAAACCATGGGAGAGACAG 57.174 45.455 18.09 3.25 0.00 3.51
6686 11603 4.061131 TCTAAACCATGGGAGAGACAGA 57.939 45.455 18.09 5.60 0.00 3.41
6687 11604 4.425772 TCTAAACCATGGGAGAGACAGAA 58.574 43.478 18.09 0.00 0.00 3.02
6688 11605 4.844085 TCTAAACCATGGGAGAGACAGAAA 59.156 41.667 18.09 0.00 0.00 2.52
6689 11606 3.710209 AACCATGGGAGAGACAGAAAG 57.290 47.619 18.09 0.00 0.00 2.62
6690 11607 1.912043 ACCATGGGAGAGACAGAAAGG 59.088 52.381 18.09 0.00 0.00 3.11
6691 11608 1.211457 CCATGGGAGAGACAGAAAGGG 59.789 57.143 2.85 0.00 0.00 3.95
6692 11609 2.191400 CATGGGAGAGACAGAAAGGGA 58.809 52.381 0.00 0.00 0.00 4.20
6693 11610 1.944177 TGGGAGAGACAGAAAGGGAG 58.056 55.000 0.00 0.00 0.00 4.30
6694 11611 1.433199 TGGGAGAGACAGAAAGGGAGA 59.567 52.381 0.00 0.00 0.00 3.71
6695 11612 2.107366 GGGAGAGACAGAAAGGGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
6696 11613 2.107366 GGAGAGACAGAAAGGGAGAGG 58.893 57.143 0.00 0.00 0.00 3.69
6697 11614 1.480545 GAGAGACAGAAAGGGAGAGGC 59.519 57.143 0.00 0.00 0.00 4.70
6698 11615 1.203237 AGAGACAGAAAGGGAGAGGCA 60.203 52.381 0.00 0.00 0.00 4.75
6699 11616 1.625818 GAGACAGAAAGGGAGAGGCAA 59.374 52.381 0.00 0.00 0.00 4.52
6700 11617 1.627834 AGACAGAAAGGGAGAGGCAAG 59.372 52.381 0.00 0.00 0.00 4.01
6701 11618 0.695347 ACAGAAAGGGAGAGGCAAGG 59.305 55.000 0.00 0.00 0.00 3.61
6702 11619 0.679321 CAGAAAGGGAGAGGCAAGGC 60.679 60.000 0.00 0.00 0.00 4.35
6703 11620 1.136329 AGAAAGGGAGAGGCAAGGCA 61.136 55.000 0.00 0.00 0.00 4.75
6704 11621 0.033699 GAAAGGGAGAGGCAAGGCAT 60.034 55.000 0.00 0.00 0.00 4.40
6705 11622 1.212935 GAAAGGGAGAGGCAAGGCATA 59.787 52.381 0.00 0.00 0.00 3.14
6706 11623 1.298953 AAGGGAGAGGCAAGGCATAA 58.701 50.000 0.00 0.00 0.00 1.90
6707 11624 1.527457 AGGGAGAGGCAAGGCATAAT 58.473 50.000 0.00 0.00 0.00 1.28
6708 11625 2.706350 AGGGAGAGGCAAGGCATAATA 58.294 47.619 0.00 0.00 0.00 0.98
6709 11626 3.263724 AGGGAGAGGCAAGGCATAATAT 58.736 45.455 0.00 0.00 0.00 1.28
6710 11627 4.438913 AGGGAGAGGCAAGGCATAATATA 58.561 43.478 0.00 0.00 0.00 0.86
6711 11628 5.042387 AGGGAGAGGCAAGGCATAATATAT 58.958 41.667 0.00 0.00 0.00 0.86
6712 11629 5.104193 AGGGAGAGGCAAGGCATAATATATG 60.104 44.000 0.00 0.00 0.00 1.78
6713 11630 5.128919 GGAGAGGCAAGGCATAATATATGG 58.871 45.833 0.00 0.00 0.00 2.74
6714 11631 5.121380 AGAGGCAAGGCATAATATATGGG 57.879 43.478 0.00 0.00 0.00 4.00
6715 11632 3.633986 GAGGCAAGGCATAATATATGGGC 59.366 47.826 0.00 0.00 0.00 5.36
6716 11633 3.011595 AGGCAAGGCATAATATATGGGCA 59.988 43.478 8.07 0.00 0.00 5.36
6717 11634 3.382546 GGCAAGGCATAATATATGGGCAG 59.617 47.826 8.07 2.99 0.00 4.85
6718 11635 4.019174 GCAAGGCATAATATATGGGCAGT 58.981 43.478 8.07 0.00 0.00 4.40
6719 11636 5.192927 GCAAGGCATAATATATGGGCAGTA 58.807 41.667 8.07 0.00 0.00 2.74
6720 11637 5.652014 GCAAGGCATAATATATGGGCAGTAA 59.348 40.000 8.07 0.00 0.00 2.24
6721 11638 6.152661 GCAAGGCATAATATATGGGCAGTAAA 59.847 38.462 8.07 0.00 0.00 2.01
6722 11639 7.309744 GCAAGGCATAATATATGGGCAGTAAAA 60.310 37.037 8.07 0.00 0.00 1.52
6723 11640 8.752187 CAAGGCATAATATATGGGCAGTAAAAT 58.248 33.333 8.07 0.00 0.00 1.82
6724 11641 9.989296 AAGGCATAATATATGGGCAGTAAAATA 57.011 29.630 8.07 0.00 0.00 1.40
6734 11651 7.929348 ATGGGCAGTAAAATATTTTATGGGT 57.071 32.000 20.60 6.59 35.35 4.51
6736 11653 8.840200 TGGGCAGTAAAATATTTTATGGGTAA 57.160 30.769 20.60 6.57 35.35 2.85
6737 11654 9.268282 TGGGCAGTAAAATATTTTATGGGTAAA 57.732 29.630 20.60 5.38 35.35 2.01
6750 11667 9.921637 ATTTTATGGGTAAATACAACTGTTGTG 57.078 29.630 30.70 7.17 45.03 3.33
6751 11668 4.839668 TGGGTAAATACAACTGTTGTGC 57.160 40.909 30.70 16.81 45.03 4.57
6752 11669 4.207955 TGGGTAAATACAACTGTTGTGCA 58.792 39.130 30.70 16.06 45.03 4.57
6753 11670 4.645136 TGGGTAAATACAACTGTTGTGCAA 59.355 37.500 30.70 15.38 45.03 4.08
6754 11671 5.303078 TGGGTAAATACAACTGTTGTGCAAT 59.697 36.000 30.70 16.83 45.03 3.56
6755 11672 6.490381 TGGGTAAATACAACTGTTGTGCAATA 59.510 34.615 30.70 14.69 45.03 1.90
6756 11673 7.177568 TGGGTAAATACAACTGTTGTGCAATAT 59.822 33.333 30.70 16.17 45.03 1.28
6757 11674 8.679100 GGGTAAATACAACTGTTGTGCAATATA 58.321 33.333 30.70 13.36 45.03 0.86
6763 11680 9.845740 ATACAACTGTTGTGCAATATATAAGGA 57.154 29.630 30.70 10.29 45.03 3.36
6764 11681 8.752005 ACAACTGTTGTGCAATATATAAGGAT 57.248 30.769 24.17 0.00 43.48 3.24
6765 11682 8.623903 ACAACTGTTGTGCAATATATAAGGATG 58.376 33.333 24.17 0.00 43.48 3.51
6766 11683 7.206981 ACTGTTGTGCAATATATAAGGATGC 57.793 36.000 0.00 0.26 37.52 3.91
6767 11684 6.207417 ACTGTTGTGCAATATATAAGGATGCC 59.793 38.462 4.33 0.00 36.20 4.40
6768 11685 6.067350 TGTTGTGCAATATATAAGGATGCCA 58.933 36.000 4.33 0.58 36.20 4.92
6769 11686 6.016360 TGTTGTGCAATATATAAGGATGCCAC 60.016 38.462 4.33 4.01 36.20 5.01
6770 11687 5.629125 TGTGCAATATATAAGGATGCCACA 58.371 37.500 4.33 5.97 36.20 4.17
6771 11688 5.473162 TGTGCAATATATAAGGATGCCACAC 59.527 40.000 4.33 0.00 36.20 3.82
6772 11689 5.009631 TGCAATATATAAGGATGCCACACC 58.990 41.667 4.33 0.00 36.20 4.16
6773 11690 5.222109 TGCAATATATAAGGATGCCACACCT 60.222 40.000 4.33 0.00 36.20 4.00
6774 11691 5.124457 GCAATATATAAGGATGCCACACCTG 59.876 44.000 0.00 0.00 36.56 4.00
6775 11692 6.240894 CAATATATAAGGATGCCACACCTGT 58.759 40.000 0.00 0.00 36.56 4.00
6776 11693 2.717639 ATAAGGATGCCACACCTGTC 57.282 50.000 0.00 0.00 36.56 3.51
6777 11694 1.656587 TAAGGATGCCACACCTGTCT 58.343 50.000 0.00 0.00 36.56 3.41
6778 11695 1.656587 AAGGATGCCACACCTGTCTA 58.343 50.000 0.00 0.00 36.56 2.59
6779 11696 1.885049 AGGATGCCACACCTGTCTAT 58.115 50.000 0.00 0.00 34.99 1.98
6780 11697 2.200081 AGGATGCCACACCTGTCTATT 58.800 47.619 0.00 0.00 34.99 1.73
6781 11698 2.578021 AGGATGCCACACCTGTCTATTT 59.422 45.455 0.00 0.00 34.99 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.095263 CGCACAAACTTAACCAGGGATG 60.095 50.000 0.00 0.00 0.00 3.51
29 30 0.382515 TGCCACGCACAAACTTAACC 59.617 50.000 0.00 0.00 31.71 2.85
30 31 2.196295 TTGCCACGCACAAACTTAAC 57.804 45.000 0.00 0.00 38.71 2.01
32 33 4.541779 CTTATTTGCCACGCACAAACTTA 58.458 39.130 0.80 0.00 39.65 2.24
33 34 3.380142 CTTATTTGCCACGCACAAACTT 58.620 40.909 0.80 0.00 39.65 2.66
38 39 1.164411 CTCCTTATTTGCCACGCACA 58.836 50.000 0.00 0.00 38.71 4.57
39 40 0.179163 GCTCCTTATTTGCCACGCAC 60.179 55.000 0.00 0.00 38.71 5.34
61 62 0.461961 AGAGACACGCTATTCCCAGC 59.538 55.000 0.00 0.00 38.23 4.85
73 75 1.668151 GCCCCAACGTCAGAGACAC 60.668 63.158 0.00 0.00 32.09 3.67
84 86 1.774856 AGACTATGTATGGGCCCCAAC 59.225 52.381 22.27 18.10 36.95 3.77
88 90 3.197983 GGATGTAGACTATGTATGGGCCC 59.802 52.174 17.59 17.59 0.00 5.80
112 114 4.749598 GCACCGATTGTTCCAGAAATTTTT 59.250 37.500 0.00 0.00 0.00 1.94
113 115 4.202202 TGCACCGATTGTTCCAGAAATTTT 60.202 37.500 0.00 0.00 0.00 1.82
114 116 3.320541 TGCACCGATTGTTCCAGAAATTT 59.679 39.130 0.00 0.00 0.00 1.82
115 117 2.890311 TGCACCGATTGTTCCAGAAATT 59.110 40.909 0.00 0.00 0.00 1.82
116 118 2.513753 TGCACCGATTGTTCCAGAAAT 58.486 42.857 0.00 0.00 0.00 2.17
120 122 0.950836 TGTTGCACCGATTGTTCCAG 59.049 50.000 0.00 0.00 0.00 3.86
122 124 0.039527 GGTGTTGCACCGATTGTTCC 60.040 55.000 2.31 0.00 44.95 3.62
123 125 3.472263 GGTGTTGCACCGATTGTTC 57.528 52.632 2.31 0.00 44.95 3.18
133 137 1.202463 CGGGAATTTGTTGGTGTTGCA 60.202 47.619 0.00 0.00 0.00 4.08
208 212 4.699522 GGTGTGGTGGCGGACTCC 62.700 72.222 0.00 0.00 0.00 3.85
217 221 2.026445 TCGACGAACGGTGTGGTG 59.974 61.111 0.00 0.00 42.82 4.17
223 227 0.667993 TTTGTAGGTCGACGAACGGT 59.332 50.000 9.92 0.00 42.82 4.83
224 228 1.069022 TCTTTGTAGGTCGACGAACGG 60.069 52.381 9.92 5.07 42.82 4.44
225 229 1.974680 GTCTTTGTAGGTCGACGAACG 59.025 52.381 9.92 0.00 44.09 3.95
243 247 3.941704 ATCCCATTCCTCCTCTTTGTC 57.058 47.619 0.00 0.00 0.00 3.18
247 251 6.152831 CGTTTTAAAATCCCATTCCTCCTCTT 59.847 38.462 3.52 0.00 0.00 2.85
288 292 1.078001 TGTTTAGCCCTTAGCCGCC 60.078 57.895 0.00 0.00 45.47 6.13
289 293 0.675522 TGTGTTTAGCCCTTAGCCGC 60.676 55.000 0.00 0.00 45.47 6.53
302 306 5.722021 AACAAAGAGACCTTGTTGTGTTT 57.278 34.783 0.40 0.00 29.92 2.83
311 315 5.625150 AGATGTGCTAAACAAAGAGACCTT 58.375 37.500 0.00 0.00 43.61 3.50
333 337 0.242825 TTAGTCTTGTGGCGACGGAG 59.757 55.000 0.00 0.00 36.53 4.63
340 344 5.024785 AGCTAGGTATTTAGTCTTGTGGC 57.975 43.478 0.00 0.00 0.00 5.01
362 366 2.353803 GGGAACTGAGCTTCTTCGCTAA 60.354 50.000 0.00 0.00 41.08 3.09
420 459 4.363138 TGCTGCTATAGTGTGAATCTTCG 58.637 43.478 0.00 0.00 0.00 3.79
437 476 2.627699 ACTCTTCTATCTAGCCTGCTGC 59.372 50.000 0.97 0.00 41.71 5.25
438 477 4.458989 CCTACTCTTCTATCTAGCCTGCTG 59.541 50.000 0.97 0.00 0.00 4.41
439 478 4.352595 TCCTACTCTTCTATCTAGCCTGCT 59.647 45.833 0.00 0.00 0.00 4.24
440 479 4.658063 TCCTACTCTTCTATCTAGCCTGC 58.342 47.826 0.00 0.00 0.00 4.85
441 480 7.504238 TCTTTTCCTACTCTTCTATCTAGCCTG 59.496 40.741 0.00 0.00 0.00 4.85
442 481 7.588169 TCTTTTCCTACTCTTCTATCTAGCCT 58.412 38.462 0.00 0.00 0.00 4.58
443 482 7.826918 TCTTTTCCTACTCTTCTATCTAGCC 57.173 40.000 0.00 0.00 0.00 3.93
447 486 8.044309 GCCTTTTCTTTTCCTACTCTTCTATCT 58.956 37.037 0.00 0.00 0.00 1.98
448 487 7.824779 TGCCTTTTCTTTTCCTACTCTTCTATC 59.175 37.037 0.00 0.00 0.00 2.08
449 488 7.690256 TGCCTTTTCTTTTCCTACTCTTCTAT 58.310 34.615 0.00 0.00 0.00 1.98
484 523 2.493675 TCAGTCTGCTGCTATCGTTCTT 59.506 45.455 0.00 0.00 42.29 2.52
573 612 1.450211 CGAGTTGAGTGGGTTGGGT 59.550 57.895 0.00 0.00 0.00 4.51
574 613 1.302511 CCGAGTTGAGTGGGTTGGG 60.303 63.158 0.00 0.00 0.00 4.12
575 614 0.602905 GACCGAGTTGAGTGGGTTGG 60.603 60.000 0.00 0.00 31.66 3.77
576 615 0.602905 GGACCGAGTTGAGTGGGTTG 60.603 60.000 0.00 0.00 31.66 3.77
577 616 1.752833 GGACCGAGTTGAGTGGGTT 59.247 57.895 0.00 0.00 31.66 4.11
578 617 2.571216 CGGACCGAGTTGAGTGGGT 61.571 63.158 8.64 0.00 34.94 4.51
579 618 2.261671 CGGACCGAGTTGAGTGGG 59.738 66.667 8.64 0.00 0.00 4.61
580 619 2.261671 CCGGACCGAGTTGAGTGG 59.738 66.667 17.49 0.00 0.00 4.00
581 620 2.432628 GCCGGACCGAGTTGAGTG 60.433 66.667 17.49 0.00 0.00 3.51
582 621 3.692406 GGCCGGACCGAGTTGAGT 61.692 66.667 17.49 0.00 0.00 3.41
651 692 2.417651 CGACGCCTCCCACTTTTGTATA 60.418 50.000 0.00 0.00 0.00 1.47
731 773 1.078989 ACTACAAGGAGGCTACCCTGT 59.921 52.381 7.20 7.20 43.12 4.00
768 834 1.690985 GGGGACTGGGGAGGAAGAG 60.691 68.421 0.00 0.00 0.00 2.85
769 835 2.454941 GGGGACTGGGGAGGAAGA 59.545 66.667 0.00 0.00 0.00 2.87
770 836 2.124996 TGGGGACTGGGGAGGAAG 59.875 66.667 0.00 0.00 0.00 3.46
772 838 4.348495 GGTGGGGACTGGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
774 840 3.330720 GTGGTGGGGACTGGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
775 841 4.194497 TGTGGTGGGGACTGGGGA 62.194 66.667 0.00 0.00 0.00 4.81
776 842 3.966543 GTGTGGTGGGGACTGGGG 61.967 72.222 0.00 0.00 0.00 4.96
777 843 3.174987 TGTGTGGTGGGGACTGGG 61.175 66.667 0.00 0.00 0.00 4.45
778 844 2.113139 GTGTGTGGTGGGGACTGG 59.887 66.667 0.00 0.00 0.00 4.00
779 845 1.071471 GAGTGTGTGGTGGGGACTG 59.929 63.158 0.00 0.00 0.00 3.51
780 846 1.383943 TGAGTGTGTGGTGGGGACT 60.384 57.895 0.00 0.00 0.00 3.85
781 847 1.227853 GTGAGTGTGTGGTGGGGAC 60.228 63.158 0.00 0.00 0.00 4.46
921 1028 1.092348 TGTCATAGTGGAGACGACGG 58.908 55.000 0.00 0.00 37.58 4.79
924 1031 1.471119 GGGTGTCATAGTGGAGACGA 58.529 55.000 0.00 0.00 37.58 4.20
927 1034 0.716591 AGGGGGTGTCATAGTGGAGA 59.283 55.000 0.00 0.00 0.00 3.71
928 1035 1.123928 GAGGGGGTGTCATAGTGGAG 58.876 60.000 0.00 0.00 0.00 3.86
930 1037 0.620410 TGGAGGGGGTGTCATAGTGG 60.620 60.000 0.00 0.00 0.00 4.00
931 1038 0.833287 CTGGAGGGGGTGTCATAGTG 59.167 60.000 0.00 0.00 0.00 2.74
932 1039 0.983378 GCTGGAGGGGGTGTCATAGT 60.983 60.000 0.00 0.00 0.00 2.12
935 1042 3.017581 GGCTGGAGGGGGTGTCAT 61.018 66.667 0.00 0.00 0.00 3.06
961 1068 4.880426 GGATCCTGGAGGGGGCGA 62.880 72.222 3.84 0.00 35.41 5.54
972 1079 0.980231 GGAGTCAGTGGCTGGATCCT 60.980 60.000 14.23 0.00 35.30 3.24
973 1080 1.267574 TGGAGTCAGTGGCTGGATCC 61.268 60.000 0.00 4.20 37.18 3.36
974 1081 0.107945 GTGGAGTCAGTGGCTGGATC 60.108 60.000 0.00 0.00 31.51 3.36
976 1083 2.217038 GGTGGAGTCAGTGGCTGGA 61.217 63.158 0.00 0.00 31.51 3.86
980 1087 2.032681 GGTGGTGGAGTCAGTGGC 59.967 66.667 0.00 0.00 0.00 5.01
982 1089 2.357517 GCGGTGGTGGAGTCAGTG 60.358 66.667 0.00 0.00 0.00 3.66
986 1093 2.034879 CACATGCGGTGGTGGAGTC 61.035 63.158 0.00 0.00 44.04 3.36
987 1094 2.032528 CACATGCGGTGGTGGAGT 59.967 61.111 0.00 0.00 44.04 3.85
1002 1109 3.134127 GTTGGCGGAGATGGGCAC 61.134 66.667 0.00 0.00 39.90 5.01
1030 1147 5.518848 TGGTCTAGTTCTTGTACGTCAAA 57.481 39.130 0.00 0.00 35.48 2.69
1032 1149 4.823442 TCTTGGTCTAGTTCTTGTACGTCA 59.177 41.667 0.00 0.00 0.00 4.35
1033 1150 5.368256 TCTTGGTCTAGTTCTTGTACGTC 57.632 43.478 0.00 0.00 0.00 4.34
1035 1152 6.010294 TCTTCTTGGTCTAGTTCTTGTACG 57.990 41.667 0.00 0.00 0.00 3.67
1037 1154 7.232188 TCTCTCTTCTTGGTCTAGTTCTTGTA 58.768 38.462 0.00 0.00 0.00 2.41
1525 1646 4.561105 GTTGAAGCAGCTAGTAGAGTTGT 58.439 43.478 0.00 0.00 38.58 3.32
1531 1652 3.201290 CCATGGTTGAAGCAGCTAGTAG 58.799 50.000 2.57 0.00 0.00 2.57
1532 1653 2.571653 ACCATGGTTGAAGCAGCTAGTA 59.428 45.455 13.00 0.00 0.00 1.82
1533 1654 1.352352 ACCATGGTTGAAGCAGCTAGT 59.648 47.619 13.00 0.00 0.00 2.57
1652 1782 2.549754 CTGGACACACAACCATCTTCAC 59.450 50.000 0.00 0.00 35.54 3.18
1661 1794 1.789078 CTGCTGCCTGGACACACAAC 61.789 60.000 0.00 0.00 0.00 3.32
1822 1958 5.068723 TGTCAATTCGGAGGAGAATACCTAC 59.931 44.000 0.00 0.00 39.69 3.18
2036 2336 2.418368 ATGTGAAGCGCCCATTTCTA 57.582 45.000 2.29 0.00 0.00 2.10
2076 2377 6.761099 ACGCCGATACTATCTGAATCTTAT 57.239 37.500 0.00 0.00 0.00 1.73
2123 2424 9.725019 TCTTATCTATGCGTAAATGGAATGAAT 57.275 29.630 0.00 0.00 0.00 2.57
2137 2468 9.653067 CGATACTACCTAAATCTTATCTATGCG 57.347 37.037 0.00 0.00 0.00 4.73
2138 2469 9.953697 CCGATACTACCTAAATCTTATCTATGC 57.046 37.037 0.00 0.00 0.00 3.14
2139 2470 9.953697 GCCGATACTACCTAAATCTTATCTATG 57.046 37.037 0.00 0.00 0.00 2.23
2140 2471 8.838365 CGCCGATACTACCTAAATCTTATCTAT 58.162 37.037 0.00 0.00 0.00 1.98
2141 2472 7.826252 ACGCCGATACTACCTAAATCTTATCTA 59.174 37.037 0.00 0.00 0.00 1.98
2142 2473 6.658391 ACGCCGATACTACCTAAATCTTATCT 59.342 38.462 0.00 0.00 0.00 1.98
2143 2474 6.850555 ACGCCGATACTACCTAAATCTTATC 58.149 40.000 0.00 0.00 0.00 1.75
2144 2475 6.830873 ACGCCGATACTACCTAAATCTTAT 57.169 37.500 0.00 0.00 0.00 1.73
2145 2476 6.710295 TGTACGCCGATACTACCTAAATCTTA 59.290 38.462 0.00 0.00 0.00 2.10
2146 2477 5.532406 TGTACGCCGATACTACCTAAATCTT 59.468 40.000 0.00 0.00 0.00 2.40
2147 2478 5.049129 GTGTACGCCGATACTACCTAAATCT 60.049 44.000 0.00 0.00 0.00 2.40
2148 2479 5.049129 AGTGTACGCCGATACTACCTAAATC 60.049 44.000 1.98 0.00 0.00 2.17
2149 2480 4.823989 AGTGTACGCCGATACTACCTAAAT 59.176 41.667 1.98 0.00 0.00 1.40
2150 2481 4.199310 AGTGTACGCCGATACTACCTAAA 58.801 43.478 1.98 0.00 0.00 1.85
2151 2482 3.808728 AGTGTACGCCGATACTACCTAA 58.191 45.455 1.98 0.00 0.00 2.69
2152 2483 3.475566 AGTGTACGCCGATACTACCTA 57.524 47.619 1.98 0.00 0.00 3.08
2153 2484 2.338577 AGTGTACGCCGATACTACCT 57.661 50.000 1.98 0.00 0.00 3.08
2154 2485 4.552166 TTAAGTGTACGCCGATACTACC 57.448 45.455 1.98 0.00 0.00 3.18
2155 2486 4.434588 CGTTTAAGTGTACGCCGATACTAC 59.565 45.833 1.98 0.00 0.00 2.73
2156 2487 4.094294 ACGTTTAAGTGTACGCCGATACTA 59.906 41.667 1.98 0.00 41.24 1.82
2157 2488 3.119849 ACGTTTAAGTGTACGCCGATACT 60.120 43.478 1.98 0.00 41.24 2.12
2158 2489 3.171277 ACGTTTAAGTGTACGCCGATAC 58.829 45.455 1.98 0.00 41.24 2.24
2159 2490 3.485947 ACGTTTAAGTGTACGCCGATA 57.514 42.857 1.98 0.00 41.24 2.92
2160 2491 2.352503 ACGTTTAAGTGTACGCCGAT 57.647 45.000 1.98 0.00 41.24 4.18
2161 2492 2.979401 TACGTTTAAGTGTACGCCGA 57.021 45.000 1.98 0.00 41.24 5.54
2162 2493 4.089780 TCAATTACGTTTAAGTGTACGCCG 59.910 41.667 1.98 1.57 41.24 6.46
2163 2494 5.514059 TCAATTACGTTTAAGTGTACGCC 57.486 39.130 1.98 0.00 41.24 5.68
2164 2495 7.819529 TTTTCAATTACGTTTAAGTGTACGC 57.180 32.000 0.00 0.00 41.24 4.42
2165 2496 8.352936 GCATTTTCAATTACGTTTAAGTGTACG 58.647 33.333 0.00 0.00 43.08 3.67
2166 2497 9.171701 TGCATTTTCAATTACGTTTAAGTGTAC 57.828 29.630 0.00 0.00 35.28 2.90
2167 2498 9.900710 ATGCATTTTCAATTACGTTTAAGTGTA 57.099 25.926 0.00 0.00 35.28 2.90
2168 2499 8.698854 CATGCATTTTCAATTACGTTTAAGTGT 58.301 29.630 0.00 0.00 35.28 3.55
2169 2500 8.698854 ACATGCATTTTCAATTACGTTTAAGTG 58.301 29.630 0.00 0.00 35.09 3.16
2170 2501 8.810652 ACATGCATTTTCAATTACGTTTAAGT 57.189 26.923 0.00 0.00 0.00 2.24
2175 2506 8.810652 AGTAAACATGCATTTTCAATTACGTT 57.189 26.923 0.00 0.00 0.00 3.99
2220 2719 1.135083 CGCCTCACTCTTTATCACCGT 60.135 52.381 0.00 0.00 0.00 4.83
2241 2741 4.160252 GCAGGAAAATGAAGCTCCCATTTA 59.840 41.667 20.48 0.00 41.71 1.40
2249 2749 3.428532 ACATCTGCAGGAAAATGAAGCT 58.571 40.909 15.13 0.00 0.00 3.74
2360 2862 2.028748 GGGCATTTCATTGTTGCAGAGT 60.029 45.455 9.82 0.00 38.12 3.24
2391 2893 2.050168 GGGTTGTGTGCACGCATG 60.050 61.111 31.88 0.00 36.14 4.06
2396 2903 2.086054 TGTTTTTGGGTTGTGTGCAC 57.914 45.000 10.75 10.75 0.00 4.57
2423 2935 4.457949 AGCGGGATATTTCGTTTTGTCTTT 59.542 37.500 0.00 0.00 0.00 2.52
2438 2953 0.104855 GTCATCACTGCAGCGGGATA 59.895 55.000 15.27 1.96 0.00 2.59
2481 2997 1.896660 CGGGTGTTGTCTTGGTGGG 60.897 63.158 0.00 0.00 0.00 4.61
2520 3038 5.520649 CACTATTTTCTTCTTAGAGGCGTCC 59.479 44.000 2.06 0.00 0.00 4.79
2578 3096 2.151502 TTTCTGCAGGGTGAAAACCA 57.848 45.000 15.13 0.00 30.41 3.67
2592 3114 5.273170 TGTTTTGAGAGTGCGAATTTTCTG 58.727 37.500 0.00 0.00 0.00 3.02
2655 3179 1.072266 TGTAAACCCATGGTCTGGCT 58.928 50.000 11.73 0.00 44.46 4.75
2694 3219 4.161102 GGGAGCCAACATAGTAGGAGTAT 58.839 47.826 0.00 0.00 0.00 2.12
2702 3227 0.550147 AGTGGGGGAGCCAACATAGT 60.550 55.000 0.00 0.00 0.00 2.12
2711 3236 4.115199 ATCGGCAAGTGGGGGAGC 62.115 66.667 0.00 0.00 0.00 4.70
2713 3238 4.424711 GCATCGGCAAGTGGGGGA 62.425 66.667 0.00 0.00 40.72 4.81
2740 3265 1.000052 TCGTTTGGTGATGCGTGACTA 60.000 47.619 0.00 0.00 0.00 2.59
2748 3273 4.434725 CGATGAGAACTTCGTTTGGTGATG 60.435 45.833 0.00 0.00 38.36 3.07
2759 3284 1.133407 AGTCGAGGCGATGAGAACTTC 59.867 52.381 0.00 0.00 38.42 3.01
2764 3289 0.533085 ATCGAGTCGAGGCGATGAGA 60.533 55.000 21.36 0.00 44.64 3.27
2799 3327 1.209019 GTCATGGTGGCTGAGTCTGAT 59.791 52.381 0.47 0.00 0.00 2.90
2825 3355 1.089920 AATGATGAAGACAGTGGCGC 58.910 50.000 0.00 0.00 0.00 6.53
2844 3374 4.178540 GACCTGTCGGTATTTCGATTTCA 58.821 43.478 0.00 0.00 45.73 2.69
2915 3447 2.037144 GCCCCTATTTCAGGTCGAGTA 58.963 52.381 0.00 0.00 43.80 2.59
2921 3453 1.077716 GTGCGCCCCTATTTCAGGT 60.078 57.895 4.18 0.00 43.80 4.00
2945 3478 2.129363 TGCTGGATCTGATGGGATTCA 58.871 47.619 0.00 0.00 31.19 2.57
2956 3489 2.103771 ACGCATGTAGATTGCTGGATCT 59.896 45.455 0.00 3.86 39.59 2.75
2994 3634 0.951040 CAGAAGGCACCAACGGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
3001 3641 0.843309 TGAGTTCCAGAAGGCACCAA 59.157 50.000 0.00 0.00 30.58 3.67
3005 3645 2.783135 GTTGATGAGTTCCAGAAGGCA 58.217 47.619 0.00 0.00 33.74 4.75
3046 3687 0.798776 GACGGTGTTCTGCTTGATGG 59.201 55.000 0.00 0.00 0.00 3.51
3106 4063 4.302622 GCTCCCTGCCCAGATCTA 57.697 61.111 0.00 0.00 35.15 1.98
3332 4330 0.550147 ACATGTACCCCTGCTTCCCT 60.550 55.000 0.00 0.00 0.00 4.20
3364 4382 7.280652 GGTGCATATAATTGGCAAGAACATTTT 59.719 33.333 5.96 0.00 39.57 1.82
3470 4509 8.591072 GTTTTGGTCCTACTATAGGTGCATATA 58.409 37.037 4.43 0.00 46.32 0.86
3471 4510 7.450903 GTTTTGGTCCTACTATAGGTGCATAT 58.549 38.462 4.43 0.00 46.32 1.78
3472 4511 6.183361 GGTTTTGGTCCTACTATAGGTGCATA 60.183 42.308 4.43 0.00 46.32 3.14
3473 4512 5.397559 GGTTTTGGTCCTACTATAGGTGCAT 60.398 44.000 4.43 0.00 46.32 3.96
3474 4513 4.080751 GGTTTTGGTCCTACTATAGGTGCA 60.081 45.833 4.43 0.00 46.32 4.57
3475 4514 4.163649 AGGTTTTGGTCCTACTATAGGTGC 59.836 45.833 4.43 0.00 46.32 5.01
3476 4515 5.952347 AGGTTTTGGTCCTACTATAGGTG 57.048 43.478 4.43 0.00 46.32 4.00
3477 4516 5.338953 GCAAGGTTTTGGTCCTACTATAGGT 60.339 44.000 4.43 0.00 39.59 3.08
3478 4517 5.123936 GCAAGGTTTTGGTCCTACTATAGG 58.876 45.833 4.43 0.00 39.78 2.57
3479 4518 5.741011 TGCAAGGTTTTGGTCCTACTATAG 58.259 41.667 0.00 0.00 34.56 1.31
3480 4519 5.765576 TGCAAGGTTTTGGTCCTACTATA 57.234 39.130 0.00 0.00 34.56 1.31
3481 4520 4.650972 TGCAAGGTTTTGGTCCTACTAT 57.349 40.909 0.00 0.00 34.56 2.12
3482 4521 4.202524 ACATGCAAGGTTTTGGTCCTACTA 60.203 41.667 0.00 0.00 34.56 1.82
3483 4522 3.157087 CATGCAAGGTTTTGGTCCTACT 58.843 45.455 0.00 0.00 34.56 2.57
3484 4523 2.890945 ACATGCAAGGTTTTGGTCCTAC 59.109 45.455 0.00 0.00 34.56 3.18
3485 4524 3.237268 ACATGCAAGGTTTTGGTCCTA 57.763 42.857 0.00 0.00 34.56 2.94
3486 4525 2.086610 ACATGCAAGGTTTTGGTCCT 57.913 45.000 0.00 0.00 34.79 3.85
3487 4526 4.535526 AATACATGCAAGGTTTTGGTCC 57.464 40.909 0.00 0.00 34.79 4.46
3488 4527 5.988561 TCAAAATACATGCAAGGTTTTGGTC 59.011 36.000 22.79 0.00 39.18 4.02
3489 4528 5.923204 TCAAAATACATGCAAGGTTTTGGT 58.077 33.333 22.79 5.78 39.18 3.67
3490 4529 7.818930 ACTATCAAAATACATGCAAGGTTTTGG 59.181 33.333 22.79 14.98 39.18 3.28
3495 4534 6.095440 GGACACTATCAAAATACATGCAAGGT 59.905 38.462 0.00 0.00 32.53 3.50
3664 4726 1.499368 TGGCAGCAGGAGATACATGA 58.501 50.000 0.00 0.00 31.40 3.07
3669 4731 1.499368 TGACATGGCAGCAGGAGATA 58.501 50.000 0.00 0.00 0.00 1.98
3675 4737 2.048444 ACCTATTGACATGGCAGCAG 57.952 50.000 0.00 2.68 0.00 4.24
3752 4814 7.934665 TGCTTCCACACTTACTATCAGTAAAAA 59.065 33.333 0.86 0.00 39.89 1.94
3822 4884 4.037446 GGTTCTTGCTTGTAAATGTCACCA 59.963 41.667 0.00 0.00 0.00 4.17
3855 4917 5.187967 ACAGAACAATTCCTTCGATCTACCT 59.812 40.000 0.00 0.00 0.00 3.08
3888 4950 4.686091 GGACTTTTGCTTTTGCCAATAGAC 59.314 41.667 0.00 0.00 46.87 2.59
4050 5112 6.403636 CCACTTCTTTGTTATCTTCATTCCCG 60.404 42.308 0.00 0.00 0.00 5.14
4223 5291 2.951229 TCCTTTTCCTGGTTCCTCAC 57.049 50.000 0.00 0.00 0.00 3.51
4267 5335 4.270566 GCTTCTGTCTATGAGCATGTTGAG 59.729 45.833 0.00 0.00 0.00 3.02
4284 5352 1.309950 CTGCCTGGATCATGCTTCTG 58.690 55.000 0.00 0.00 0.00 3.02
4418 5486 1.919240 AGTGGTACGTGGAGATGTCA 58.081 50.000 0.00 0.00 0.00 3.58
4438 5512 5.617528 TTATTTATGGCCAACCTACGAGA 57.382 39.130 10.96 0.00 36.63 4.04
4449 5523 8.742777 TGCTCTATGATTTCATTATTTATGGCC 58.257 33.333 0.00 0.00 37.76 5.36
4465 5539 4.427637 ACAGATCCATCCTGCTCTATGAT 58.572 43.478 0.00 0.00 35.14 2.45
4488 5565 1.667212 TGCTTCATGCTCATGTTAGCG 59.333 47.619 21.88 7.89 45.85 4.26
4547 5624 1.199624 GTTTGAAAGCACTGGCAACG 58.800 50.000 0.00 0.00 44.61 4.10
4777 5860 5.830991 AGTCCAGTACTTGCAAAAACCATAA 59.169 36.000 0.00 0.00 33.35 1.90
4780 5863 3.626930 AGTCCAGTACTTGCAAAAACCA 58.373 40.909 0.00 0.00 33.35 3.67
4791 5874 1.348036 GTTCTGCCCAAGTCCAGTACT 59.652 52.381 0.00 0.00 41.49 2.73
4835 5921 1.225376 TTGCGTTAGCCGACCAACAG 61.225 55.000 0.00 0.00 44.33 3.16
4851 5937 2.090524 GCGCAGGCACTTCAATTGC 61.091 57.895 0.30 0.00 34.60 3.56
4920 6006 1.974236 AGGTGCAACTGTAGCTCTTCT 59.026 47.619 1.66 0.00 33.29 2.85
4977 6063 5.696030 AGGCTAAACTTTCTCAACTCCTTT 58.304 37.500 0.00 0.00 0.00 3.11
5107 6226 0.032515 TCGGACCAAGGCTGAGGATA 60.033 55.000 12.70 0.00 0.00 2.59
5118 9977 0.981183 AGCCAGTGTAATCGGACCAA 59.019 50.000 0.00 0.00 0.00 3.67
5289 10148 5.068987 GGTGAGAGTAATGAGCTCTGAGAAT 59.931 44.000 16.19 0.00 42.74 2.40
5310 10169 6.422100 CCATGTAATCATAGAGAAGAACGGTG 59.578 42.308 0.00 0.00 32.47 4.94
5420 10279 1.792757 AAGGCTGGACATTGCTCCCA 61.793 55.000 0.00 0.00 0.00 4.37
5563 10437 1.222115 GCCTGCAACTCGTCTTCGTT 61.222 55.000 0.00 0.00 38.33 3.85
5643 10517 0.535335 GTACCTTGAGTGCGGGATGA 59.465 55.000 0.00 0.00 0.00 2.92
5665 10539 5.404946 ACATTTACGATGTTAGTAGCACGT 58.595 37.500 14.92 14.92 37.68 4.49
5666 10540 5.944049 ACATTTACGATGTTAGTAGCACG 57.056 39.130 0.00 7.19 0.00 5.34
5667 10541 7.982371 ACTACATTTACGATGTTAGTAGCAC 57.018 36.000 0.00 0.00 32.80 4.40
5668 10542 8.991243 AAACTACATTTACGATGTTAGTAGCA 57.009 30.769 0.00 0.00 32.80 3.49
5817 10719 7.545489 ACTACTTTTCTGATCTTACCCGTAAG 58.455 38.462 8.09 8.09 42.86 2.34
5962 10868 5.172934 TCACAAAAACACGTGAGACTAACT 58.827 37.500 25.01 0.00 37.23 2.24
5963 10869 5.459110 TCACAAAAACACGTGAGACTAAC 57.541 39.130 25.01 0.00 37.23 2.34
5974 10886 6.074142 GCTGAAGATGGAAATCACAAAAACAC 60.074 38.462 0.00 0.00 0.00 3.32
5993 10905 4.758674 TCCTTCTGTCAAATGAAGCTGAAG 59.241 41.667 10.86 10.86 38.55 3.02
6015 10927 2.926778 ACTATCTGCATGAAGGCCTC 57.073 50.000 5.23 0.00 0.00 4.70
6033 10945 7.531857 TGATCTAGAACTCCATCTCCATTAC 57.468 40.000 0.00 0.00 0.00 1.89
6171 11083 4.500499 AGCTCTGCTGGAAATTACAGAT 57.500 40.909 9.83 0.00 38.41 2.90
6258 11175 9.655769 CATTTGAACTATTTATCGAATGACTGG 57.344 33.333 9.19 0.00 44.72 4.00
6293 11210 8.113173 CTCTACAAGGAACTAACTAGAAGTGT 57.887 38.462 0.00 0.00 38.49 3.55
6309 11226 4.080638 AGCTCAATTTCTCCCTCTACAAGG 60.081 45.833 0.00 0.00 45.77 3.61
6356 11273 0.794981 GCGCGCCTACGATGATCTAG 60.795 60.000 23.24 0.00 43.93 2.43
6357 11274 1.209383 GCGCGCCTACGATGATCTA 59.791 57.895 23.24 0.00 43.93 1.98
6358 11275 2.049985 GCGCGCCTACGATGATCT 60.050 61.111 23.24 0.00 43.93 2.75
6359 11276 3.461982 CGCGCGCCTACGATGATC 61.462 66.667 27.72 0.00 43.93 2.92
6360 11277 3.768185 AACGCGCGCCTACGATGAT 62.768 57.895 32.58 2.28 43.93 2.45
6361 11278 4.485834 AACGCGCGCCTACGATGA 62.486 61.111 32.58 0.00 43.93 2.92
6362 11279 4.265630 CAACGCGCGCCTACGATG 62.266 66.667 32.58 12.57 43.93 3.84
6380 11297 1.213537 CCAAAATGGACAGGCGCAG 59.786 57.895 10.83 3.04 40.96 5.18
6381 11298 2.929903 GCCAAAATGGACAGGCGCA 61.930 57.895 10.83 0.00 40.96 6.09
6382 11299 2.125952 GCCAAAATGGACAGGCGC 60.126 61.111 0.00 0.00 40.96 6.53
6384 11301 1.544724 TACTGCCAAAATGGACAGGC 58.455 50.000 18.43 0.00 42.20 4.85
6385 11302 7.765695 ATATTATACTGCCAAAATGGACAGG 57.234 36.000 18.43 0.00 42.20 4.00
6387 11304 9.860650 ACTAATATTATACTGCCAAAATGGACA 57.139 29.630 0.00 0.00 40.96 4.02
6494 11411 9.745018 AAAACCATCGGATGAATTATATCTGAT 57.255 29.630 19.30 15.69 46.45 2.90
6495 11412 9.002600 CAAAACCATCGGATGAATTATATCTGA 57.997 33.333 19.30 13.26 42.39 3.27
6496 11413 8.786898 ACAAAACCATCGGATGAATTATATCTG 58.213 33.333 19.30 9.99 33.23 2.90
6497 11414 8.924511 ACAAAACCATCGGATGAATTATATCT 57.075 30.769 19.30 0.00 0.00 1.98
6499 11416 9.793259 AGTACAAAACCATCGGATGAATTATAT 57.207 29.630 19.30 2.33 0.00 0.86
6500 11417 9.621629 AAGTACAAAACCATCGGATGAATTATA 57.378 29.630 19.30 7.30 0.00 0.98
6501 11418 8.519799 AAGTACAAAACCATCGGATGAATTAT 57.480 30.769 19.30 8.09 0.00 1.28
6502 11419 7.931578 AAGTACAAAACCATCGGATGAATTA 57.068 32.000 19.30 0.00 0.00 1.40
6503 11420 6.834168 AAGTACAAAACCATCGGATGAATT 57.166 33.333 19.30 10.10 0.00 2.17
6504 11421 6.834168 AAAGTACAAAACCATCGGATGAAT 57.166 33.333 19.30 4.33 0.00 2.57
6505 11422 6.039941 ACAAAAGTACAAAACCATCGGATGAA 59.960 34.615 19.30 0.00 0.00 2.57
6506 11423 5.533154 ACAAAAGTACAAAACCATCGGATGA 59.467 36.000 19.30 0.00 0.00 2.92
6507 11424 5.629020 CACAAAAGTACAAAACCATCGGATG 59.371 40.000 11.07 11.07 0.00 3.51
6508 11425 5.300792 ACACAAAAGTACAAAACCATCGGAT 59.699 36.000 0.00 0.00 0.00 4.18
6509 11426 4.641094 ACACAAAAGTACAAAACCATCGGA 59.359 37.500 0.00 0.00 0.00 4.55
6510 11427 4.927422 ACACAAAAGTACAAAACCATCGG 58.073 39.130 0.00 0.00 0.00 4.18
6511 11428 5.816919 AGACACAAAAGTACAAAACCATCG 58.183 37.500 0.00 0.00 0.00 3.84
6512 11429 8.474006 AAAAGACACAAAAGTACAAAACCATC 57.526 30.769 0.00 0.00 0.00 3.51
6513 11430 8.840833 AAAAAGACACAAAAGTACAAAACCAT 57.159 26.923 0.00 0.00 0.00 3.55
6514 11431 9.930693 ATAAAAAGACACAAAAGTACAAAACCA 57.069 25.926 0.00 0.00 0.00 3.67
6523 11440 8.166066 GCGTCAAAAATAAAAAGACACAAAAGT 58.834 29.630 0.00 0.00 0.00 2.66
6524 11441 8.165428 TGCGTCAAAAATAAAAAGACACAAAAG 58.835 29.630 0.00 0.00 0.00 2.27
6525 11442 8.018677 TGCGTCAAAAATAAAAAGACACAAAA 57.981 26.923 0.00 0.00 0.00 2.44
6526 11443 7.582435 TGCGTCAAAAATAAAAAGACACAAA 57.418 28.000 0.00 0.00 0.00 2.83
6527 11444 7.582435 TTGCGTCAAAAATAAAAAGACACAA 57.418 28.000 0.00 0.00 31.29 3.33
6528 11445 6.237701 GCTTGCGTCAAAAATAAAAAGACACA 60.238 34.615 0.00 0.00 0.00 3.72
6529 11446 6.120157 GCTTGCGTCAAAAATAAAAAGACAC 58.880 36.000 0.00 0.00 0.00 3.67
6530 11447 5.807520 TGCTTGCGTCAAAAATAAAAAGACA 59.192 32.000 0.00 0.00 0.00 3.41
6531 11448 6.019881 ACTGCTTGCGTCAAAAATAAAAAGAC 60.020 34.615 0.00 0.00 0.00 3.01
6532 11449 6.039616 ACTGCTTGCGTCAAAAATAAAAAGA 58.960 32.000 0.00 0.00 0.00 2.52
6533 11450 6.272698 ACTGCTTGCGTCAAAAATAAAAAG 57.727 33.333 0.00 0.00 0.00 2.27
6534 11451 6.654793 AACTGCTTGCGTCAAAAATAAAAA 57.345 29.167 0.00 0.00 0.00 1.94
6535 11452 6.473521 CAAACTGCTTGCGTCAAAAATAAAA 58.526 32.000 0.00 0.00 0.00 1.52
6536 11453 6.030379 CAAACTGCTTGCGTCAAAAATAAA 57.970 33.333 0.00 0.00 0.00 1.40
6537 11454 5.633996 CAAACTGCTTGCGTCAAAAATAA 57.366 34.783 0.00 0.00 0.00 1.40
6591 11508 9.959721 ACCATCTAACATACTTGTACAGAAAAT 57.040 29.630 0.00 0.00 34.06 1.82
6595 11512 9.470399 TCTTACCATCTAACATACTTGTACAGA 57.530 33.333 0.00 0.00 34.06 3.41
6598 11515 9.530633 CCTTCTTACCATCTAACATACTTGTAC 57.469 37.037 0.00 0.00 34.06 2.90
6599 11516 9.263446 ACCTTCTTACCATCTAACATACTTGTA 57.737 33.333 0.00 0.00 34.06 2.41
6600 11517 8.147244 ACCTTCTTACCATCTAACATACTTGT 57.853 34.615 0.00 0.00 37.82 3.16
6601 11518 8.883731 CAACCTTCTTACCATCTAACATACTTG 58.116 37.037 0.00 0.00 0.00 3.16
6602 11519 8.047310 CCAACCTTCTTACCATCTAACATACTT 58.953 37.037 0.00 0.00 0.00 2.24
6603 11520 7.182206 ACCAACCTTCTTACCATCTAACATACT 59.818 37.037 0.00 0.00 0.00 2.12
6604 11521 7.336396 ACCAACCTTCTTACCATCTAACATAC 58.664 38.462 0.00 0.00 0.00 2.39
6605 11522 7.504926 ACCAACCTTCTTACCATCTAACATA 57.495 36.000 0.00 0.00 0.00 2.29
6606 11523 6.388619 ACCAACCTTCTTACCATCTAACAT 57.611 37.500 0.00 0.00 0.00 2.71
6607 11524 5.836024 ACCAACCTTCTTACCATCTAACA 57.164 39.130 0.00 0.00 0.00 2.41
6608 11525 6.070366 ACCTACCAACCTTCTTACCATCTAAC 60.070 42.308 0.00 0.00 0.00 2.34
6609 11526 6.027482 ACCTACCAACCTTCTTACCATCTAA 58.973 40.000 0.00 0.00 0.00 2.10
6610 11527 5.596763 ACCTACCAACCTTCTTACCATCTA 58.403 41.667 0.00 0.00 0.00 1.98
6611 11528 4.436079 ACCTACCAACCTTCTTACCATCT 58.564 43.478 0.00 0.00 0.00 2.90
6612 11529 4.838904 ACCTACCAACCTTCTTACCATC 57.161 45.455 0.00 0.00 0.00 3.51
6613 11530 5.594199 AAACCTACCAACCTTCTTACCAT 57.406 39.130 0.00 0.00 0.00 3.55
6614 11531 5.104024 TCAAAACCTACCAACCTTCTTACCA 60.104 40.000 0.00 0.00 0.00 3.25
6615 11532 5.379187 TCAAAACCTACCAACCTTCTTACC 58.621 41.667 0.00 0.00 0.00 2.85
6616 11533 7.520451 AATCAAAACCTACCAACCTTCTTAC 57.480 36.000 0.00 0.00 0.00 2.34
6617 11534 8.417884 CAAAATCAAAACCTACCAACCTTCTTA 58.582 33.333 0.00 0.00 0.00 2.10
6618 11535 7.093068 ACAAAATCAAAACCTACCAACCTTCTT 60.093 33.333 0.00 0.00 0.00 2.52
6619 11536 6.382859 ACAAAATCAAAACCTACCAACCTTCT 59.617 34.615 0.00 0.00 0.00 2.85
6620 11537 6.578944 ACAAAATCAAAACCTACCAACCTTC 58.421 36.000 0.00 0.00 0.00 3.46
6621 11538 6.553953 ACAAAATCAAAACCTACCAACCTT 57.446 33.333 0.00 0.00 0.00 3.50
6622 11539 6.553953 AACAAAATCAAAACCTACCAACCT 57.446 33.333 0.00 0.00 0.00 3.50
6623 11540 7.618502 AAAACAAAATCAAAACCTACCAACC 57.381 32.000 0.00 0.00 0.00 3.77
6662 11579 4.906618 TGTCTCTCCCATGGTTTAGAAAC 58.093 43.478 11.73 8.09 38.17 2.78
6663 11580 4.844085 TCTGTCTCTCCCATGGTTTAGAAA 59.156 41.667 11.73 4.24 0.00 2.52
6664 11581 4.425772 TCTGTCTCTCCCATGGTTTAGAA 58.574 43.478 11.73 0.06 0.00 2.10
6665 11582 4.061131 TCTGTCTCTCCCATGGTTTAGA 57.939 45.455 11.73 9.52 0.00 2.10
6666 11583 4.826274 TTCTGTCTCTCCCATGGTTTAG 57.174 45.455 11.73 5.33 0.00 1.85
6667 11584 4.019321 CCTTTCTGTCTCTCCCATGGTTTA 60.019 45.833 11.73 0.00 0.00 2.01
6668 11585 3.245052 CCTTTCTGTCTCTCCCATGGTTT 60.245 47.826 11.73 0.00 0.00 3.27
6669 11586 2.307098 CCTTTCTGTCTCTCCCATGGTT 59.693 50.000 11.73 0.00 0.00 3.67
6670 11587 1.912043 CCTTTCTGTCTCTCCCATGGT 59.088 52.381 11.73 0.00 0.00 3.55
6671 11588 1.211457 CCCTTTCTGTCTCTCCCATGG 59.789 57.143 4.14 4.14 0.00 3.66
6672 11589 2.170187 CTCCCTTTCTGTCTCTCCCATG 59.830 54.545 0.00 0.00 0.00 3.66
6673 11590 2.045047 TCTCCCTTTCTGTCTCTCCCAT 59.955 50.000 0.00 0.00 0.00 4.00
6674 11591 1.433199 TCTCCCTTTCTGTCTCTCCCA 59.567 52.381 0.00 0.00 0.00 4.37
6675 11592 2.107366 CTCTCCCTTTCTGTCTCTCCC 58.893 57.143 0.00 0.00 0.00 4.30
6676 11593 2.107366 CCTCTCCCTTTCTGTCTCTCC 58.893 57.143 0.00 0.00 0.00 3.71
6677 11594 1.480545 GCCTCTCCCTTTCTGTCTCTC 59.519 57.143 0.00 0.00 0.00 3.20
6678 11595 1.203237 TGCCTCTCCCTTTCTGTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
6679 11596 1.270907 TGCCTCTCCCTTTCTGTCTC 58.729 55.000 0.00 0.00 0.00 3.36
6680 11597 1.627834 CTTGCCTCTCCCTTTCTGTCT 59.372 52.381 0.00 0.00 0.00 3.41
6681 11598 1.339535 CCTTGCCTCTCCCTTTCTGTC 60.340 57.143 0.00 0.00 0.00 3.51
6682 11599 0.695347 CCTTGCCTCTCCCTTTCTGT 59.305 55.000 0.00 0.00 0.00 3.41
6683 11600 0.679321 GCCTTGCCTCTCCCTTTCTG 60.679 60.000 0.00 0.00 0.00 3.02
6684 11601 1.136329 TGCCTTGCCTCTCCCTTTCT 61.136 55.000 0.00 0.00 0.00 2.52
6685 11602 0.033699 ATGCCTTGCCTCTCCCTTTC 60.034 55.000 0.00 0.00 0.00 2.62
6686 11603 1.298953 TATGCCTTGCCTCTCCCTTT 58.701 50.000 0.00 0.00 0.00 3.11
6687 11604 1.298953 TTATGCCTTGCCTCTCCCTT 58.701 50.000 0.00 0.00 0.00 3.95
6688 11605 1.527457 ATTATGCCTTGCCTCTCCCT 58.473 50.000 0.00 0.00 0.00 4.20
6689 11606 3.728385 ATATTATGCCTTGCCTCTCCC 57.272 47.619 0.00 0.00 0.00 4.30
6690 11607 5.128919 CCATATATTATGCCTTGCCTCTCC 58.871 45.833 0.00 0.00 0.00 3.71
6691 11608 5.128919 CCCATATATTATGCCTTGCCTCTC 58.871 45.833 0.00 0.00 0.00 3.20
6692 11609 4.629694 GCCCATATATTATGCCTTGCCTCT 60.630 45.833 0.00 0.00 0.00 3.69
6693 11610 3.633986 GCCCATATATTATGCCTTGCCTC 59.366 47.826 0.00 0.00 0.00 4.70
6694 11611 3.011595 TGCCCATATATTATGCCTTGCCT 59.988 43.478 0.00 0.00 0.00 4.75
6695 11612 3.364549 TGCCCATATATTATGCCTTGCC 58.635 45.455 0.00 0.00 0.00 4.52
6696 11613 4.019174 ACTGCCCATATATTATGCCTTGC 58.981 43.478 0.00 0.00 0.00 4.01
6697 11614 7.701539 TTTACTGCCCATATATTATGCCTTG 57.298 36.000 0.00 0.00 0.00 3.61
6698 11615 8.899887 ATTTTACTGCCCATATATTATGCCTT 57.100 30.769 0.00 0.00 0.00 4.35
6708 11625 9.614269 ACCCATAAAATATTTTACTGCCCATAT 57.386 29.630 20.21 2.68 35.65 1.78
6710 11627 7.929348 ACCCATAAAATATTTTACTGCCCAT 57.071 32.000 20.21 3.97 35.65 4.00
6711 11628 8.840200 TTACCCATAAAATATTTTACTGCCCA 57.160 30.769 20.21 1.80 35.65 5.36
6724 11641 9.921637 CACAACAGTTGTATTTACCCATAAAAT 57.078 29.630 18.74 0.00 43.23 1.82
6725 11642 7.868415 GCACAACAGTTGTATTTACCCATAAAA 59.132 33.333 18.74 0.00 43.23 1.52
6726 11643 7.014326 TGCACAACAGTTGTATTTACCCATAAA 59.986 33.333 18.74 0.00 43.23 1.40
6727 11644 6.490381 TGCACAACAGTTGTATTTACCCATAA 59.510 34.615 18.74 0.00 43.23 1.90
6728 11645 6.004574 TGCACAACAGTTGTATTTACCCATA 58.995 36.000 18.74 0.00 43.23 2.74
6729 11646 4.830046 TGCACAACAGTTGTATTTACCCAT 59.170 37.500 18.74 0.00 43.23 4.00
6730 11647 4.207955 TGCACAACAGTTGTATTTACCCA 58.792 39.130 18.74 5.21 43.23 4.51
6731 11648 4.839668 TGCACAACAGTTGTATTTACCC 57.160 40.909 18.74 2.91 43.23 3.69
6737 11654 9.845740 TCCTTATATATTGCACAACAGTTGTAT 57.154 29.630 18.74 11.41 43.23 2.29
6738 11655 9.845740 ATCCTTATATATTGCACAACAGTTGTA 57.154 29.630 18.74 4.19 43.23 2.41
6739 11656 8.623903 CATCCTTATATATTGCACAACAGTTGT 58.376 33.333 13.53 13.53 46.75 3.32
6740 11657 7.592533 GCATCCTTATATATTGCACAACAGTTG 59.407 37.037 12.03 12.03 33.58 3.16
6741 11658 7.255590 GGCATCCTTATATATTGCACAACAGTT 60.256 37.037 8.25 0.00 35.04 3.16
6742 11659 6.207417 GGCATCCTTATATATTGCACAACAGT 59.793 38.462 8.25 0.00 35.04 3.55
6743 11660 6.207221 TGGCATCCTTATATATTGCACAACAG 59.793 38.462 8.25 0.00 35.04 3.16
6744 11661 6.016360 GTGGCATCCTTATATATTGCACAACA 60.016 38.462 8.25 0.00 35.04 3.33
6745 11662 6.016360 TGTGGCATCCTTATATATTGCACAAC 60.016 38.462 8.25 4.69 35.04 3.32
6746 11663 6.016360 GTGTGGCATCCTTATATATTGCACAA 60.016 38.462 8.25 0.00 35.04 3.33
6747 11664 5.473162 GTGTGGCATCCTTATATATTGCACA 59.527 40.000 8.25 7.62 35.04 4.57
6748 11665 5.106157 GGTGTGGCATCCTTATATATTGCAC 60.106 44.000 8.25 5.71 35.04 4.57
6749 11666 5.009631 GGTGTGGCATCCTTATATATTGCA 58.990 41.667 8.25 0.00 35.04 4.08
6750 11667 5.124457 CAGGTGTGGCATCCTTATATATTGC 59.876 44.000 10.71 0.00 30.91 3.56
6751 11668 6.240894 ACAGGTGTGGCATCCTTATATATTG 58.759 40.000 10.71 2.80 30.91 1.90
6752 11669 6.273260 AGACAGGTGTGGCATCCTTATATATT 59.727 38.462 10.71 0.00 31.79 1.28
6753 11670 5.787494 AGACAGGTGTGGCATCCTTATATAT 59.213 40.000 10.71 0.00 31.79 0.86
6754 11671 5.155161 AGACAGGTGTGGCATCCTTATATA 58.845 41.667 10.71 0.00 31.79 0.86
6755 11672 3.976654 AGACAGGTGTGGCATCCTTATAT 59.023 43.478 10.71 0.00 31.79 0.86
6756 11673 3.384168 AGACAGGTGTGGCATCCTTATA 58.616 45.455 10.71 0.00 31.79 0.98
6757 11674 2.200081 AGACAGGTGTGGCATCCTTAT 58.800 47.619 10.71 3.89 31.79 1.73
6758 11675 1.656587 AGACAGGTGTGGCATCCTTA 58.343 50.000 10.71 0.00 31.79 2.69
6759 11676 1.656587 TAGACAGGTGTGGCATCCTT 58.343 50.000 10.71 4.48 31.79 3.36
6760 11677 1.885049 ATAGACAGGTGTGGCATCCT 58.115 50.000 8.11 8.11 31.79 3.24
6761 11678 2.717639 AATAGACAGGTGTGGCATCC 57.282 50.000 0.00 0.00 31.79 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.