AutoCloner

Multiple sequence alignment - TraesCS7A01G440100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G440100	chr7A	100.000	2785	0	0	1	2785	634901451	634898667	0.000000e+00	5144.0
1	TraesCS7A01G440100	chr7D	87.599	1766	142	36	734	2450	549300839	549299102	0.000000e+00	1977.0
2	TraesCS7A01G440100	chr7D	87.006	354	38	6	2433	2785	549299091	549298745	2.600000e-105	392.0
3	TraesCS7A01G440100	chr7B	89.695	1378	119	14	1423	2785	593406872	593405503	0.000000e+00	1736.0
4	TraesCS7A01G440100	chr7B	90.942	276	17	4	734	1001	593410795	593410520	5.670000e-97	364.0
5	TraesCS7A01G440100	chr7B	83.178	428	21	17	994	1380	593407305	593406888	7.390000e-91	344.0
6	TraesCS7A01G440100	chr7B	82.833	233	34	5	2553	2784	593289086	593288859	1.310000e-48	204.0
7	TraesCS7A01G440100	chr3A	94.766	726	23	4	21	731	597767099	597767824	0.000000e+00	1116.0
8	TraesCS7A01G440100	chr6A	93.717	748	30	5	1	731	578516762	578516015	0.000000e+00	1105.0
9	TraesCS7A01G440100	chr6A	78.738	729	118	20	1152	1867	796534	795830	1.180000e-123	453.0
10	TraesCS7A01G440100	chr6A	89.431	246	25	1	910	1155	796801	796557	2.690000e-80	309.0
11	TraesCS7A01G440100	chr5A	93.076	751	32	5	1	731	516842900	516842150	0.000000e+00	1081.0
12	TraesCS7A01G440100	chr1A	92.886	745	34	9	6	731	556968992	556969736	0.000000e+00	1064.0
13	TraesCS7A01G440100	chr4A	92.553	752	36	8	1	732	130754014	130754765	0.000000e+00	1061.0
14	TraesCS7A01G440100	chr3D	92.410	751	37	8	1	731	462265676	462266426	0.000000e+00	1053.0
15	TraesCS7A01G440100	chr2B	92.133	750	40	8	1	731	682168058	682167309	0.000000e+00	1040.0
16	TraesCS7A01G440100	chr2B	78.990	733	120	20	1152	1870	773348987	773349699	1.170000e-128	470.0
17	TraesCS7A01G440100	chr2B	89.600	250	25	1	907	1156	773348717	773348965	1.610000e-82	316.0
18	TraesCS7A01G440100	chr2B	80.838	167	18	1	968	1134	753785552	753785400	4.870000e-23	119.0
19	TraesCS7A01G440100	chr2D	91.755	752	35	7	1	731	328494512	328493767	0.000000e+00	1020.0
20	TraesCS7A01G440100	chr2D	76.871	294	46	11	799	1071	617537225	617536933	2.240000e-31	147.0
21	TraesCS7A01G440100	chr2D	77.301	163	23	1	994	1156	617523442	617523294	1.780000e-12	84.2
22	TraesCS7A01G440100	chr1D	91.578	748	46	9	1	731	436185442	436186189	0.000000e+00	1016.0
23	TraesCS7A01G440100	chr6D	80.782	614	96	10	1152	1763	2102628	2103221	7.030000e-126	460.0
24	TraesCS7A01G440100	chr6D	89.600	250	25	1	907	1156	2102358	2102606	1.610000e-82	316.0
25	TraesCS7A01G440100	chr6B	89.837	246	24	1	910	1155	4491101	4490857	5.790000e-82	315.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G440100	chr7A	634898667	634901451	2784	True	5144.000000	5144	100.000000	1	2785	1	chr7A.!!$R1	2784
1	TraesCS7A01G440100	chr7D	549298745	549300839	2094	True	1184.500000	1977	87.302500	734	2785	2	chr7D.!!$R1	2051
2	TraesCS7A01G440100	chr7B	593405503	593410795	5292	True	814.666667	1736	87.938333	734	2785	3	chr7B.!!$R2	2051
3	TraesCS7A01G440100	chr3A	597767099	597767824	725	False	1116.000000	1116	94.766000	21	731	1	chr3A.!!$F1	710
4	TraesCS7A01G440100	chr6A	578516015	578516762	747	True	1105.000000	1105	93.717000	1	731	1	chr6A.!!$R1	730
5	TraesCS7A01G440100	chr6A	795830	796801	971	True	381.000000	453	84.084500	910	1867	2	chr6A.!!$R2	957
6	TraesCS7A01G440100	chr5A	516842150	516842900	750	True	1081.000000	1081	93.076000	1	731	1	chr5A.!!$R1	730
7	TraesCS7A01G440100	chr1A	556968992	556969736	744	False	1064.000000	1064	92.886000	6	731	1	chr1A.!!$F1	725
8	TraesCS7A01G440100	chr4A	130754014	130754765	751	False	1061.000000	1061	92.553000	1	732	1	chr4A.!!$F1	731
9	TraesCS7A01G440100	chr3D	462265676	462266426	750	False	1053.000000	1053	92.410000	1	731	1	chr3D.!!$F1	730
10	TraesCS7A01G440100	chr2B	682167309	682168058	749	True	1040.000000	1040	92.133000	1	731	1	chr2B.!!$R1	730
11	TraesCS7A01G440100	chr2B	773348717	773349699	982	False	393.000000	470	84.295000	907	1870	2	chr2B.!!$F1	963
12	TraesCS7A01G440100	chr2D	328493767	328494512	745	True	1020.000000	1020	91.755000	1	731	1	chr2D.!!$R1	730
13	TraesCS7A01G440100	chr1D	436185442	436186189	747	False	1016.000000	1016	91.578000	1	731	1	chr1D.!!$F1	730
14	TraesCS7A01G440100	chr6D	2102358	2103221	863	False	388.000000	460	85.191000	907	1763	2	chr6D.!!$F1	856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
512	546	0.526739	CGACGATATGGGCGACAACA	60.527	55.0	7.25	0.0	0.0	3.33	F
1165	4460	0.251354	GCTGGAGAGAAGTCATGGCA	59.749	55.0	0.00	0.0	0.0	4.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1421	4738	0.038744	AGGCTTTGTGAGTGGGGATG	59.961	55.0	0.0	0.0	0.0	3.51	R
2479	5854	0.465097	AATCAGCCTCCATGCCTTCG	60.465	55.0	0.0	0.0	0.0	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
228	248	2.838225	CCACGATCTACCCGGCCT	60.838	66.667	0.00	0.00	0.00	5.19
307	340	1.660560	GATCATTGCACCGCCAAGCT	61.661	55.000	0.00	0.00	0.00	3.74
512	546	0.526739	CGACGATATGGGCGACAACA	60.527	55.000	7.25	0.00	0.00	3.33
621	655	5.372343	TGTGCCCTAGATGTGATATGTTT	57.628	39.130	0.00	0.00	0.00	2.83
680	714	3.379057	TGCTGCTGTGGTCATGATTTATG	59.621	43.478	0.00	0.00	38.17	1.90
705	739	9.443323	TGTTCTGTTTATTCGGATTAAATCTCA	57.557	29.630	7.97	2.78	0.00	3.27
732	766	7.547227	AGTAATTTGCTCATATTTCCAACACC	58.453	34.615	0.00	0.00	0.00	4.16
763	797	8.887717	GCCAGTATCATATATTTCACCTCAATC	58.112	37.037	0.00	0.00	0.00	2.67
777	811	5.650266	TCACCTCAATCTCTCAGTAGTTCTC	59.350	44.000	0.00	0.00	0.00	2.87
797	835	5.745514	TCTCGTATGCGTTAATCTCTGTAC	58.254	41.667	2.37	0.00	39.49	2.90
839	877	7.748677	TCATTGCTCCATTCTCCTAATGAATA	58.251	34.615	0.00	0.00	33.38	1.75
966	1008	1.070175	CAAACTGTTGTTAGCGGGTCG	60.070	52.381	0.00	0.00	34.96	4.79
1011	4275	0.594602	CAGTTGCCATGTCTGGTGTG	59.405	55.000	0.00	0.00	45.10	3.82
1080	4344	3.548770	TCTCAATCTGTTCCATCATGGC	58.451	45.455	0.00	0.00	37.47	4.40
1121	4385	4.726317	TGGGAGGACATTTGATCCATCTAA	59.274	41.667	0.00	0.00	38.86	2.10
1165	4460	0.251354	GCTGGAGAGAAGTCATGGCA	59.749	55.000	0.00	0.00	0.00	4.92
1215	4512	2.606272	GGTCGGTGTATTTCTTTAGCGG	59.394	50.000	0.00	0.00	35.07	5.52
1270	4577	6.449635	TGAAATAATGAGCAGCGGTTTATT	57.550	33.333	0.00	0.00	0.00	1.40
1312	4619	4.207955	TGTCTATCATCGTAGGTGAGCTT	58.792	43.478	0.00	0.00	0.00	3.74
1320	4635	6.062749	TCATCGTAGGTGAGCTTATACTCTT	58.937	40.000	0.00	0.00	37.58	2.85
1326	4641	3.493524	GGTGAGCTTATACTCTTCAGGCC	60.494	52.174	0.00	0.00	37.58	5.19
1333	4648	5.069251	GCTTATACTCTTCAGGCCTACTTGA	59.931	44.000	3.98	0.00	0.00	3.02
1415	4732	3.662078	TCCATCAGGGATGACAGAGAAT	58.338	45.455	7.75	0.00	42.09	2.40
1417	4734	3.390311	CCATCAGGGATGACAGAGAATGA	59.610	47.826	7.75	0.00	42.09	2.57
1421	4738	4.100653	TCAGGGATGACAGAGAATGATGTC	59.899	45.833	0.00	0.00	44.88	3.06
1432	4749	3.117745	AGAATGATGTCATCCCCACTCA	58.882	45.455	10.36	0.00	35.10	3.41
1450	4767	1.417517	TCACAAAGCCTTCTCTCTGCA	59.582	47.619	0.00	0.00	0.00	4.41
1451	4768	1.534595	CACAAAGCCTTCTCTCTGCAC	59.465	52.381	0.00	0.00	0.00	4.57
1566	4883	2.893895	CGCCGCTGACTCATGCAT	60.894	61.111	0.00	0.00	0.00	3.96
1571	4888	2.033801	GCCGCTGACTCATGCATTAATT	59.966	45.455	0.00	0.00	0.00	1.40
1575	4892	4.271776	CGCTGACTCATGCATTAATTCTCA	59.728	41.667	0.00	0.00	0.00	3.27
1586	4903	8.630917	CATGCATTAATTCTCAAGGATTTCTCT	58.369	33.333	0.00	0.00	0.00	3.10
1633	4950	2.290287	TGACATCCGGGGGAGTGTG	61.290	63.158	0.00	0.00	34.05	3.82
1648	4965	2.816087	GAGTGTGTGGATTTGTGCAGAT	59.184	45.455	0.00	0.00	0.00	2.90
1679	4996	2.738521	GCGCTCTTCTTCGGCACA	60.739	61.111	0.00	0.00	0.00	4.57
1682	4999	0.946221	CGCTCTTCTTCGGCACACTT	60.946	55.000	0.00	0.00	0.00	3.16
1685	5002	2.213499	CTCTTCTTCGGCACACTTGTT	58.787	47.619	0.00	0.00	0.00	2.83
1700	5017	3.003689	CACTTGTTGGCTTCTTGATCGTT	59.996	43.478	0.00	0.00	0.00	3.85
1810	5138	1.123077	TGGCGGTATTCTGCTGAGAT	58.877	50.000	2.96	0.00	44.62	2.75
1867	5196	9.372369	GAAGTTGTTATAGTGTTGAAGCTAGAT	57.628	33.333	0.00	0.00	0.00	1.98
1987	5327	5.308497	TCAAGTGTATAAACCTGAAGACCCA	59.692	40.000	0.00	0.00	0.00	4.51
2035	5375	2.294512	CGAGTGTATATGCTCAGGCTGA	59.705	50.000	17.68	17.68	39.59	4.26
2046	5386	3.784573	AGGCTGAAGCGTGTCTCT	58.215	55.556	0.00	0.00	43.26	3.10
2049	5389	0.735632	GGCTGAAGCGTGTCTCTGAG	60.736	60.000	0.00	0.00	43.26	3.35
2150	5490	9.787435	TTTCTTCTAACTAAAAGCCATCAGTTA	57.213	29.630	0.00	0.00	33.47	2.24
2151	5491	9.959721	TTCTTCTAACTAAAAGCCATCAGTTAT	57.040	29.630	0.00	0.00	34.07	1.89
2233	5578	9.716507	TTGCGAGTAAAGCTATTGATAAAATTC	57.283	29.630	0.00	0.00	35.28	2.17
2270	5617	6.995364	TGCCATGAAAGAAATGAGAATTTCA	58.005	32.000	12.35	2.10	43.54	2.69
2276	5623	9.649167	ATGAAAGAAATGAGAATTTCACATTCC	57.351	29.630	18.36	9.40	42.56	3.01
2290	5637	4.433615	TCACATTCCTTCTCGCTGATTAC	58.566	43.478	0.00	0.00	0.00	1.89
2430	5777	5.119931	TGATGACTAAACATTGCCACAAC	57.880	39.130	0.00	0.00	0.00	3.32
2445	5820	9.638239	CATTGCCACAACTAAAATAATACAACT	57.362	29.630	0.00	0.00	0.00	3.16
2480	5855	5.732647	CACAGAAAGTGTAGTGAACAAAACG	59.267	40.000	0.00	0.00	43.40	3.60
2487	5862	3.880490	TGTAGTGAACAAAACGAAGGCAT	59.120	39.130	0.00	0.00	34.29	4.40
2509	5884	4.415596	TGGAGGCTGATTACAACCAAATT	58.584	39.130	0.00	0.00	34.97	1.82
2510	5885	4.462483	TGGAGGCTGATTACAACCAAATTC	59.538	41.667	0.00	0.00	34.97	2.17
2511	5886	4.438744	GGAGGCTGATTACAACCAAATTCG	60.439	45.833	0.00	0.00	34.97	3.34
2535	5913	7.046652	CGATTATTGGATTAGCCTGAGATGAT	58.953	38.462	0.00	0.00	37.63	2.45
2542	5920	5.247110	GGATTAGCCTGAGATGATAACCTCA	59.753	44.000	0.00	0.00	37.77	3.86
2543	5921	8.412035	TGGATTAGCCTGAGATGATAACCTCAT	61.412	40.741	0.00	0.00	41.74	2.90
2544	5922	7.124901	GGATTAGCCTGAGATGATAACCTCATA	59.875	40.741	0.00	0.00	44.83	2.15
2546	5924	6.949117	AGCCTGAGATGATAACCTCATAAT	57.051	37.500	0.00	0.00	44.83	1.28
2610	5988	2.262915	GAGCAGGACTCACCCACG	59.737	66.667	0.00	0.00	45.49	4.94
2639	6017	6.436218	CCCTGGCTAACCTGTAAAATTTTAGT	59.564	38.462	10.92	3.50	36.63	2.24
2688	6066	5.555017	ACATAAGTGAGCAACAGATCAGTT	58.445	37.500	8.58	8.58	42.24	3.16
2689	6067	6.701340	ACATAAGTGAGCAACAGATCAGTTA	58.299	36.000	11.84	11.84	43.58	2.24
2692	6070	5.220710	AGTGAGCAACAGATCAGTTAACT	57.779	39.130	1.12	1.12	27.35	2.24
2693	6071	6.346477	AGTGAGCAACAGATCAGTTAACTA	57.654	37.500	8.04	0.00	27.35	2.24
2694	6072	6.393990	AGTGAGCAACAGATCAGTTAACTAG	58.606	40.000	8.04	3.38	27.35	2.57
2695	6073	5.578727	GTGAGCAACAGATCAGTTAACTAGG	59.421	44.000	8.04	0.00	0.00	3.02
2696	6074	5.246203	TGAGCAACAGATCAGTTAACTAGGT	59.754	40.000	8.04	0.00	0.00	3.08
2697	6075	6.436218	TGAGCAACAGATCAGTTAACTAGGTA	59.564	38.462	8.04	0.00	0.00	3.08
2698	6076	7.124298	TGAGCAACAGATCAGTTAACTAGGTAT	59.876	37.037	8.04	0.00	0.00	2.73
2699	6077	7.268586	AGCAACAGATCAGTTAACTAGGTATG	58.731	38.462	8.04	9.17	0.00	2.39
2700	6078	6.018669	GCAACAGATCAGTTAACTAGGTATGC	60.019	42.308	8.04	9.48	0.00	3.14
2701	6079	6.791867	ACAGATCAGTTAACTAGGTATGCA	57.208	37.500	8.04	0.00	0.00	3.96
2740	6119	9.023967	ACAGAAACATTTTCTCTCAAAATTTCG	57.976	29.630	0.00	0.00	33.79	3.46
2749	6128	6.182039	TCTCTCAAAATTTCGAATTCGCAT	57.818	33.333	22.90	13.88	39.60	4.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
217	237	0.395311	CTGACTACAGGCCGGGTAGA	60.395	60.000	31.71	16.94	40.49	2.59
228	248	2.082231	GTAGACGTCTGCCTGACTACA	58.918	52.381	28.12	0.23	43.25	2.74
307	340	1.394532	AGGAGGGGTGGAGAAGACTA	58.605	55.000	0.00	0.00	0.00	2.59
563	597	4.713824	ATTCTACCACGATCTCGAACAA	57.286	40.909	6.60	0.00	43.02	2.83
732	766	8.976353	AGGTGAAATATATGATACTGGCTCTAG	58.024	37.037	0.00	0.00	0.00	2.43
763	797	3.310227	ACGCATACGAGAACTACTGAGAG	59.690	47.826	0.00	0.00	43.93	3.20
797	835	1.321805	TGAAATTGCCCATCCCAGCG	61.322	55.000	0.00	0.00	0.00	5.18
966	1008	1.815003	CAGGGTTTCAGCACTTCCATC	59.185	52.381	0.00	0.00	0.00	3.51
1001	1043	4.927782	GCACCGGCACACCAGACA	62.928	66.667	0.00	0.00	40.72	3.41
1080	4344	5.243426	TCCCAAAACTTCTTGAAAAGTCG	57.757	39.130	0.00	0.00	46.34	4.18
1121	4385	2.663196	GTGCCGCCACCTCTAAGT	59.337	61.111	0.00	0.00	35.92	2.24
1165	4460	5.765182	CCCGGCTTGTTAGAAAGATGATATT	59.235	40.000	0.00	0.00	0.00	1.28
1201	4496	5.084055	CGTCCAAAACCGCTAAAGAAATAC	58.916	41.667	0.00	0.00	0.00	1.89
1215	4512	1.529438	TCGACTTGATGCGTCCAAAAC	59.471	47.619	2.83	0.00	0.00	2.43
1270	4577	4.798882	ACAAACAAGTCAGGGTATTGGAA	58.201	39.130	0.00	0.00	0.00	3.53
1312	4619	6.265649	GTGATCAAGTAGGCCTGAAGAGTATA	59.734	42.308	17.99	0.00	0.00	1.47
1320	4635	1.847328	TCGTGATCAAGTAGGCCTGA	58.153	50.000	17.99	4.92	0.00	3.86
1326	4641	2.797491	TGTCGCATCGTGATCAAGTAG	58.203	47.619	8.54	4.00	0.00	2.57
1333	4648	0.249615	CCTCCATGTCGCATCGTGAT	60.250	55.000	0.00	0.00	0.00	3.06
1409	4726	3.390639	GAGTGGGGATGACATCATTCTCT	59.609	47.826	17.08	10.76	33.36	3.10
1415	4732	1.655372	TGTGAGTGGGGATGACATCA	58.345	50.000	17.08	0.00	0.00	3.07
1417	4734	2.881403	GCTTTGTGAGTGGGGATGACAT	60.881	50.000	0.00	0.00	0.00	3.06
1421	4738	0.038744	AGGCTTTGTGAGTGGGGATG	59.961	55.000	0.00	0.00	0.00	3.51
1432	4749	1.875576	CGTGCAGAGAGAAGGCTTTGT	60.876	52.381	0.00	0.00	0.00	2.83
1450	4767	0.392998	CTGCTTTGGGTCATAGGCGT	60.393	55.000	0.00	0.00	0.00	5.68
1451	4768	1.097547	CCTGCTTTGGGTCATAGGCG	61.098	60.000	0.00	0.00	0.00	5.52
1555	4872	6.417258	TCCTTGAGAATTAATGCATGAGTCA	58.583	36.000	0.00	0.00	0.00	3.41
1562	4879	7.067859	CCAGAGAAATCCTTGAGAATTAATGCA	59.932	37.037	0.00	0.00	0.00	3.96
1566	4883	5.586243	CGCCAGAGAAATCCTTGAGAATTAA	59.414	40.000	0.00	0.00	0.00	1.40
1571	4888	2.179427	TCGCCAGAGAAATCCTTGAGA	58.821	47.619	0.00	0.00	0.00	3.27
1575	4892	1.133976	CCCATCGCCAGAGAAATCCTT	60.134	52.381	0.00	0.00	0.00	3.36
1586	4903	1.913951	AATCAGTCAGCCCATCGCCA	61.914	55.000	0.00	0.00	38.78	5.69
1633	4950	1.133790	GCCTCATCTGCACAAATCCAC	59.866	52.381	0.00	0.00	0.00	4.02
1679	4996	2.851195	ACGATCAAGAAGCCAACAAGT	58.149	42.857	0.00	0.00	0.00	3.16
1682	4999	1.266718	GCAACGATCAAGAAGCCAACA	59.733	47.619	0.00	0.00	0.00	3.33
1685	5002	0.320334	TCGCAACGATCAAGAAGCCA	60.320	50.000	0.00	0.00	0.00	4.75
1700	5017	0.104120	CAAGTATCACCCCGATCGCA	59.896	55.000	10.32	0.00	35.39	5.10
1842	5171	9.726438	AATCTAGCTTCAACACTATAACAACTT	57.274	29.630	0.00	0.00	0.00	2.66
1867	5196	2.656947	AACACCTCCAGCAAGCTAAA	57.343	45.000	0.00	0.00	0.00	1.85
1870	5199	1.884067	GCTAAACACCTCCAGCAAGCT	60.884	52.381	0.00	0.00	34.13	3.74
1871	5200	0.523519	GCTAAACACCTCCAGCAAGC	59.476	55.000	0.00	0.00	34.13	4.01
1872	5201	2.191128	AGCTAAACACCTCCAGCAAG	57.809	50.000	0.00	0.00	36.47	4.01
1974	5314	1.140312	TCTTGCTGGGTCTTCAGGTT	58.860	50.000	0.00	0.00	35.43	3.50
1987	5327	4.022849	GCTTCAGGTGTGTTTTATCTTGCT	60.023	41.667	0.00	0.00	0.00	3.91
2035	5375	1.758440	TTGGCCTCAGAGACACGCTT	61.758	55.000	3.32	0.00	0.00	4.68
2178	5519	8.392124	TGTGCATGTATACAAATTTGAAATCG	57.608	30.769	24.64	7.60	0.00	3.34
2232	5577	3.657610	TCATGGCAGAAGATTCCCTAGA	58.342	45.455	0.00	0.00	0.00	2.43
2233	5578	4.428294	TTCATGGCAGAAGATTCCCTAG	57.572	45.455	0.00	0.00	0.00	3.02
2270	5617	4.160439	TCAGTAATCAGCGAGAAGGAATGT	59.840	41.667	0.00	0.00	0.00	2.71
2276	5623	3.838120	TGTGTCAGTAATCAGCGAGAAG	58.162	45.455	0.00	0.00	0.00	2.85
2290	5637	3.748048	ACGAATCCTGAAACATGTGTCAG	59.252	43.478	31.48	31.48	40.84	3.51
2359	5706	5.700402	ATCTCCTTGCCTGTGTAAAGTAT	57.300	39.130	0.00	0.00	0.00	2.12
2399	5746	5.920193	ATGTTTAGTCATCAACCAATGGG	57.080	39.130	3.55	0.00	41.29	4.00
2430	5777	8.485591	GGTAGCTACGCAGTTGTATTATTTTAG	58.514	37.037	17.48	0.00	37.78	1.85
2445	5820	1.616865	ACTTTCTGTGGTAGCTACGCA	59.383	47.619	17.48	16.49	0.00	5.24
2460	5835	5.963586	CCTTCGTTTTGTTCACTACACTTTC	59.036	40.000	0.00	0.00	36.21	2.62
2468	5843	2.034558	CCATGCCTTCGTTTTGTTCACT	59.965	45.455	0.00	0.00	0.00	3.41
2479	5854	0.465097	AATCAGCCTCCATGCCTTCG	60.465	55.000	0.00	0.00	0.00	3.79
2480	5855	2.225467	GTAATCAGCCTCCATGCCTTC	58.775	52.381	0.00	0.00	0.00	3.46
2487	5862	3.517296	TTTGGTTGTAATCAGCCTCCA	57.483	42.857	3.15	0.00	43.81	3.86
2509	5884	6.211384	TCATCTCAGGCTAATCCAATAATCGA	59.789	38.462	0.00	0.00	37.29	3.59
2510	5885	6.401394	TCATCTCAGGCTAATCCAATAATCG	58.599	40.000	0.00	0.00	37.29	3.34
2511	5886	9.896645	TTATCATCTCAGGCTAATCCAATAATC	57.103	33.333	0.00	0.00	37.29	1.75
2544	5922	9.025041	AGCAAGCTACAGGAGTAAATAAAAATT	57.975	29.630	0.00	0.00	0.00	1.82
2546	5924	7.663905	TCAGCAAGCTACAGGAGTAAATAAAAA	59.336	33.333	0.00	0.00	0.00	1.94
2586	5964	0.534873	GTGAGTCCTGCTCTTCCTCC	59.465	60.000	0.00	0.00	44.41	4.30
2587	5965	0.534873	GGTGAGTCCTGCTCTTCCTC	59.465	60.000	0.00	0.00	44.41	3.71
2639	6017	2.303163	ACCGCGCTTACATTATGTGA	57.697	45.000	8.26	0.00	0.00	3.58
2740	6119	2.223377	GGTACGAATCCCATGCGAATTC	59.777	50.000	0.00	0.00	0.00	2.17
2749	6128	3.772572	TCAATCTTCAGGTACGAATCCCA	59.227	43.478	0.00	0.00	0.00	4.37

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.