Multiple sequence alignment - TraesCS7A01G439400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G439400 chr7A 100.000 2735 0 0 1 2735 634463046 634465780 0.000000e+00 5051.0
1 TraesCS7A01G439400 chr7A 98.622 1379 16 3 643 2019 634476617 634477994 0.000000e+00 2438.0
2 TraesCS7A01G439400 chr7A 90.218 1329 87 19 695 1996 634605253 634606565 0.000000e+00 1694.0
3 TraesCS7A01G439400 chr7A 89.841 315 24 7 374 686 634604629 634604937 5.490000e-107 398.0
4 TraesCS7A01G439400 chr7A 89.600 250 19 4 128 376 42922843 42923086 7.350000e-81 311.0
5 TraesCS7A01G439400 chr7A 89.516 248 20 3 128 375 43039246 43039005 2.650000e-80 309.0
6 TraesCS7A01G439400 chr7A 89.837 246 17 7 2332 2571 54760097 54759854 2.650000e-80 309.0
7 TraesCS7A01G439400 chr7A 89.516 248 21 2 128 375 75608083 75608325 2.650000e-80 309.0
8 TraesCS7A01G439400 chr7A 89.516 248 21 2 128 375 75609386 75609628 2.650000e-80 309.0
9 TraesCS7A01G439400 chr7A 89.113 248 22 2 128 375 75602874 75603116 1.230000e-78 303.0
10 TraesCS7A01G439400 chr7A 89.326 178 17 1 378 555 634476068 634476243 3.540000e-54 222.0
11 TraesCS7A01G439400 chr7A 83.402 241 18 5 2332 2571 659061749 659061530 1.280000e-48 204.0
12 TraesCS7A01G439400 chr7A 100.000 67 0 0 68 134 42922353 42922419 1.030000e-24 124.0
13 TraesCS7A01G439400 chr7A 100.000 67 0 0 68 134 43041596 43041530 1.030000e-24 124.0
14 TraesCS7A01G439400 chr7A 100.000 67 0 0 68 134 75597252 75597318 1.030000e-24 124.0
15 TraesCS7A01G439400 chr7A 92.683 41 2 1 554 594 634476566 634476605 1.060000e-04 58.4
16 TraesCS7A01G439400 chr7B 92.119 1675 79 32 374 2021 592807362 592809010 0.000000e+00 2313.0
17 TraesCS7A01G439400 chr7B 91.821 1675 85 31 374 2021 592867152 592868801 0.000000e+00 2287.0
18 TraesCS7A01G439400 chr7B 92.755 1256 55 14 732 1968 592718270 592719508 0.000000e+00 1783.0
19 TraesCS7A01G439400 chr7B 84.852 812 94 12 953 1741 592534853 592534048 0.000000e+00 791.0
20 TraesCS7A01G439400 chr7B 89.730 370 28 8 374 740 592716778 592717140 5.330000e-127 464.0
21 TraesCS7A01G439400 chr7D 94.468 1392 57 14 643 2019 549134480 549135866 0.000000e+00 2126.0
22 TraesCS7A01G439400 chr7D 91.601 1274 65 17 763 2021 549274160 549275406 0.000000e+00 1722.0
23 TraesCS7A01G439400 chr7D 85.909 809 88 17 953 1741 548916088 548915286 0.000000e+00 839.0
24 TraesCS7A01G439400 chr7D 93.333 255 10 6 374 625 549134238 549134488 1.200000e-98 370.0
25 TraesCS7A01G439400 chr7D 82.564 195 20 11 955 1142 614535594 614535781 2.820000e-35 159.0
26 TraesCS7A01G439400 chr3A 90.416 553 46 7 2023 2571 138831035 138831584 0.000000e+00 721.0
27 TraesCS7A01G439400 chr3A 96.533 375 10 1 1 375 420734808 420735179 3.870000e-173 617.0
28 TraesCS7A01G439400 chr3A 96.533 375 9 3 1 375 550436499 550436129 3.870000e-173 617.0
29 TraesCS7A01G439400 chr3A 97.714 175 3 1 2562 2735 724394512 724394338 1.590000e-77 300.0
30 TraesCS7A01G439400 chr2D 90.364 550 47 6 2023 2571 606424221 606423677 0.000000e+00 717.0
31 TraesCS7A01G439400 chrUn 90.018 551 43 9 2023 2571 99882174 99881634 0.000000e+00 702.0
32 TraesCS7A01G439400 chrUn 99.398 166 1 0 2570 2735 328496 328661 4.430000e-78 302.0
33 TraesCS7A01G439400 chrUn 88.710 248 23 2 128 375 329519053 329518811 5.730000e-77 298.0
34 TraesCS7A01G439400 chrUn 100.000 67 0 0 68 134 1185239 1185173 1.030000e-24 124.0
35 TraesCS7A01G439400 chr6B 89.159 452 35 9 2023 2472 720463103 720463542 3.980000e-153 551.0
36 TraesCS7A01G439400 chr6B 82.857 560 72 21 2023 2571 663168840 663169386 5.300000e-132 481.0
37 TraesCS7A01G439400 chr6B 98.802 167 2 0 2569 2735 246710258 246710092 5.730000e-77 298.0
38 TraesCS7A01G439400 chr1B 91.667 312 23 3 2023 2334 661148456 661148764 1.950000e-116 429.0
39 TraesCS7A01G439400 chr3D 88.254 315 32 4 2020 2334 232920110 232920419 3.330000e-99 372.0
40 TraesCS7A01G439400 chr2B 88.141 312 35 2 2023 2334 551257199 551256890 1.200000e-98 370.0
41 TraesCS7A01G439400 chr2B 97.688 173 4 0 2563 2735 63045063 63044891 5.730000e-77 298.0
42 TraesCS7A01G439400 chr4B 87.898 314 31 6 2023 2334 624147620 624147312 2.000000e-96 363.0
43 TraesCS7A01G439400 chr4B 86.831 243 23 6 2332 2571 624147274 624147038 2.090000e-66 263.0
44 TraesCS7A01G439400 chr4D 90.574 244 17 5 2332 2571 80087493 80087734 4.390000e-83 318.0
45 TraesCS7A01G439400 chr4D 83.333 234 14 9 2341 2571 201881049 201880838 2.780000e-45 193.0
46 TraesCS7A01G439400 chr3B 97.222 180 5 0 2556 2735 369041350 369041529 3.420000e-79 305.0
47 TraesCS7A01G439400 chr2A 100.000 165 0 0 2571 2735 753499723 753499559 3.420000e-79 305.0
48 TraesCS7A01G439400 chr2A 96.591 176 4 2 2561 2735 608866787 608866961 9.580000e-75 291.0
49 TraesCS7A01G439400 chr5B 99.394 165 1 0 2571 2735 399794794 399794630 1.590000e-77 300.0
50 TraesCS7A01G439400 chr4A 99.394 165 1 0 2571 2735 13339745 13339581 1.590000e-77 300.0
51 TraesCS7A01G439400 chr1D 88.755 249 23 2 128 376 468027171 468027414 1.590000e-77 300.0
52 TraesCS7A01G439400 chr1D 100.000 67 0 0 68 134 468025940 468026006 1.030000e-24 124.0
53 TraesCS7A01G439400 chr1D 96.296 54 2 0 6 59 468025603 468025656 3.750000e-14 89.8
54 TraesCS7A01G439400 chr5A 100.000 67 0 0 68 134 554298637 554298703 1.030000e-24 124.0
55 TraesCS7A01G439400 chr5A 100.000 67 0 0 68 134 566607037 566607103 1.030000e-24 124.0
56 TraesCS7A01G439400 chr6D 96.774 31 1 0 2517 2547 34436415 34436445 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G439400 chr7A 634463046 634465780 2734 False 5051.000000 5051 100.000000 1 2735 1 chr7A.!!$F3 2734
1 TraesCS7A01G439400 chr7A 634604629 634606565 1936 False 1046.000000 1694 90.029500 374 1996 2 chr7A.!!$F7 1622
2 TraesCS7A01G439400 chr7A 634476068 634477994 1926 False 906.133333 2438 93.543667 378 2019 3 chr7A.!!$F6 1641
3 TraesCS7A01G439400 chr7A 75608083 75609628 1545 False 309.000000 309 89.516000 128 375 2 chr7A.!!$F5 247
4 TraesCS7A01G439400 chr7A 42922353 42923086 733 False 217.500000 311 94.800000 68 376 2 chr7A.!!$F4 308
5 TraesCS7A01G439400 chr7A 43039005 43041596 2591 True 216.500000 309 94.758000 68 375 2 chr7A.!!$R3 307
6 TraesCS7A01G439400 chr7B 592807362 592809010 1648 False 2313.000000 2313 92.119000 374 2021 1 chr7B.!!$F1 1647
7 TraesCS7A01G439400 chr7B 592867152 592868801 1649 False 2287.000000 2287 91.821000 374 2021 1 chr7B.!!$F2 1647
8 TraesCS7A01G439400 chr7B 592716778 592719508 2730 False 1123.500000 1783 91.242500 374 1968 2 chr7B.!!$F3 1594
9 TraesCS7A01G439400 chr7B 592534048 592534853 805 True 791.000000 791 84.852000 953 1741 1 chr7B.!!$R1 788
10 TraesCS7A01G439400 chr7D 549274160 549275406 1246 False 1722.000000 1722 91.601000 763 2021 1 chr7D.!!$F1 1258
11 TraesCS7A01G439400 chr7D 549134238 549135866 1628 False 1248.000000 2126 93.900500 374 2019 2 chr7D.!!$F3 1645
12 TraesCS7A01G439400 chr7D 548915286 548916088 802 True 839.000000 839 85.909000 953 1741 1 chr7D.!!$R1 788
13 TraesCS7A01G439400 chr3A 138831035 138831584 549 False 721.000000 721 90.416000 2023 2571 1 chr3A.!!$F1 548
14 TraesCS7A01G439400 chr2D 606423677 606424221 544 True 717.000000 717 90.364000 2023 2571 1 chr2D.!!$R1 548
15 TraesCS7A01G439400 chrUn 99881634 99882174 540 True 702.000000 702 90.018000 2023 2571 1 chrUn.!!$R2 548
16 TraesCS7A01G439400 chr6B 663168840 663169386 546 False 481.000000 481 82.857000 2023 2571 1 chr6B.!!$F1 548
17 TraesCS7A01G439400 chr4B 624147038 624147620 582 True 313.000000 363 87.364500 2023 2571 2 chr4B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 3360 0.040603 GTCGGTGAGACGTCGTCTTT 60.041 55.0 27.57 8.14 43.53 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 7059 0.170561 ACGCACGGACACTTAGCTAG 59.829 55.0 0.0 0.0 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.844577 CAAGAGGTTGGAATCTTGCTG 57.155 47.619 2.33 0.00 44.14 4.41
21 22 1.831580 AGAGGTTGGAATCTTGCTGC 58.168 50.000 0.00 0.00 0.00 5.25
22 23 1.353694 AGAGGTTGGAATCTTGCTGCT 59.646 47.619 0.00 0.00 0.00 4.24
23 24 2.165998 GAGGTTGGAATCTTGCTGCTT 58.834 47.619 0.00 0.00 0.00 3.91
24 25 1.891150 AGGTTGGAATCTTGCTGCTTG 59.109 47.619 0.00 0.00 0.00 4.01
25 26 1.067354 GGTTGGAATCTTGCTGCTTGG 60.067 52.381 0.00 0.00 0.00 3.61
27 28 1.538047 TGGAATCTTGCTGCTTGGTC 58.462 50.000 0.00 0.00 0.00 4.02
28 29 0.449388 GGAATCTTGCTGCTTGGTCG 59.551 55.000 0.00 0.00 0.00 4.79
29 30 0.179179 GAATCTTGCTGCTTGGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
31 32 4.093952 CTTGCTGCTTGGTCGCCG 62.094 66.667 0.00 0.00 0.00 6.46
46 47 4.087892 CCGCAGTCCCTGGAGGTG 62.088 72.222 0.00 0.00 36.75 4.00
47 48 2.997315 CGCAGTCCCTGGAGGTGA 60.997 66.667 0.00 0.00 36.75 4.02
49 50 2.985456 CAGTCCCTGGAGGTGAGC 59.015 66.667 0.00 0.00 36.75 4.26
50 51 1.915266 CAGTCCCTGGAGGTGAGCA 60.915 63.158 0.00 0.00 36.75 4.26
51 52 1.152030 AGTCCCTGGAGGTGAGCAA 60.152 57.895 0.00 0.00 36.75 3.91
52 53 0.548682 AGTCCCTGGAGGTGAGCAAT 60.549 55.000 0.00 0.00 36.75 3.56
53 54 0.107459 GTCCCTGGAGGTGAGCAATC 60.107 60.000 0.00 0.00 36.75 2.67
54 55 0.547471 TCCCTGGAGGTGAGCAATCA 60.547 55.000 0.00 0.00 36.75 2.57
55 56 0.107312 CCCTGGAGGTGAGCAATCAG 60.107 60.000 0.00 0.00 0.00 2.90
56 57 0.907486 CCTGGAGGTGAGCAATCAGA 59.093 55.000 0.00 0.00 0.00 3.27
57 58 1.134461 CCTGGAGGTGAGCAATCAGAG 60.134 57.143 0.00 0.00 0.00 3.35
58 59 0.251354 TGGAGGTGAGCAATCAGAGC 59.749 55.000 0.00 0.00 0.00 4.09
59 60 0.809241 GGAGGTGAGCAATCAGAGCG 60.809 60.000 0.00 0.00 37.01 5.03
60 61 1.427592 GAGGTGAGCAATCAGAGCGC 61.428 60.000 0.00 0.00 37.01 5.92
61 62 2.467826 GGTGAGCAATCAGAGCGCC 61.468 63.158 2.29 0.00 37.01 6.53
62 63 1.449246 GTGAGCAATCAGAGCGCCT 60.449 57.895 2.29 0.00 37.01 5.52
63 64 1.153489 TGAGCAATCAGAGCGCCTC 60.153 57.895 2.29 0.76 37.01 4.70
64 65 1.143620 GAGCAATCAGAGCGCCTCT 59.856 57.895 2.29 3.29 42.11 3.69
198 2554 6.779860 TGGCTAAAAGAGTAAAAGATGGACT 58.220 36.000 0.00 0.00 0.00 3.85
213 2569 6.506500 AGATGGACTTGTAGCTCAAAATTG 57.493 37.500 0.00 0.00 35.48 2.32
226 2582 9.914131 GTAGCTCAAAATTGTAAGATTTTCCTT 57.086 29.630 0.00 0.00 37.17 3.36
266 2622 5.357257 TCCTTCAGAAATCTGTAATACCGC 58.643 41.667 10.06 0.00 44.12 5.68
280 2636 8.252417 TCTGTAATACCGCAGTGACTAATAAAA 58.748 33.333 0.00 0.00 34.57 1.52
281 2637 8.774890 TGTAATACCGCAGTGACTAATAAAAA 57.225 30.769 0.00 0.00 0.00 1.94
282 2638 9.386010 TGTAATACCGCAGTGACTAATAAAAAT 57.614 29.630 0.00 0.00 0.00 1.82
340 2696 4.535692 ACATGGGGCCTAAATTGTGATTTT 59.464 37.500 0.84 0.00 36.82 1.82
395 2751 6.239120 CCCTGCTTGGATTAATTCATAAGTGG 60.239 42.308 0.00 1.10 38.35 4.00
436 2792 4.537015 AGCGAAAAATAAACACACTGAGC 58.463 39.130 0.00 0.00 0.00 4.26
437 2793 3.357823 GCGAAAAATAAACACACTGAGCG 59.642 43.478 0.00 0.00 0.00 5.03
457 2813 6.882678 TGAGCGTAGAGTATAATGCCATACTA 59.117 38.462 3.48 0.00 40.92 1.82
461 2817 7.974501 GCGTAGAGTATAATGCCATACTACATT 59.025 37.037 0.00 0.00 40.92 2.71
519 2878 4.453136 GGAATAGAACAACCGTGCTACAAA 59.547 41.667 0.00 0.00 36.01 2.83
588 3274 4.702274 ACACAAGCCCATGCCCCC 62.702 66.667 0.00 0.00 38.69 5.40
627 3313 1.678635 CACACGTTGGGCCCATCAT 60.679 57.895 29.23 11.36 0.00 2.45
629 3315 1.678635 CACGTTGGGCCCATCATGT 60.679 57.895 29.23 20.85 0.00 3.21
662 3349 1.026718 GGGCCAATCAAGTCGGTGAG 61.027 60.000 4.39 0.00 0.00 3.51
673 3360 0.040603 GTCGGTGAGACGTCGTCTTT 60.041 55.000 27.57 8.14 43.53 2.52
832 4965 4.397420 AGGCCATAAATGTGCGAATATCA 58.603 39.130 5.01 0.00 0.00 2.15
1126 5265 1.425412 CACGTCCAAAGGTACGGAAG 58.575 55.000 10.92 0.00 43.25 3.46
1896 6079 8.474006 AGGCGTTACCATTTGATTTAATTTTC 57.526 30.769 0.00 0.00 43.14 2.29
2037 6239 4.916183 AGAAATCACTAGCAAAAGAGCCT 58.084 39.130 0.00 0.00 34.23 4.58
2094 6297 6.172136 TCCATTGACAATGACCACATTTTT 57.828 33.333 26.36 0.00 43.17 1.94
2301 6507 6.467490 ACCATAATATGTCAATCCATCCCA 57.533 37.500 0.00 0.00 0.00 4.37
2319 6525 5.964958 TCCCAGCAGTTAATTCTTCAAAG 57.035 39.130 0.00 0.00 0.00 2.77
2583 7071 9.857957 AAACTCTATTGTAACTAGCTAAGTGTC 57.142 33.333 0.00 0.00 38.88 3.67
2584 7072 7.998580 ACTCTATTGTAACTAGCTAAGTGTCC 58.001 38.462 0.00 0.00 38.88 4.02
2585 7073 7.024340 TCTATTGTAACTAGCTAAGTGTCCG 57.976 40.000 0.00 0.00 38.88 4.79
2586 7074 5.656213 ATTGTAACTAGCTAAGTGTCCGT 57.344 39.130 0.00 0.00 38.88 4.69
2587 7075 4.430137 TGTAACTAGCTAAGTGTCCGTG 57.570 45.455 0.00 0.00 38.88 4.94
2588 7076 2.365408 AACTAGCTAAGTGTCCGTGC 57.635 50.000 0.00 0.00 38.88 5.34
2589 7077 0.170561 ACTAGCTAAGTGTCCGTGCG 59.829 55.000 0.00 0.00 36.93 5.34
2590 7078 0.170561 CTAGCTAAGTGTCCGTGCGT 59.829 55.000 0.00 0.00 0.00 5.24
2591 7079 0.599558 TAGCTAAGTGTCCGTGCGTT 59.400 50.000 0.00 0.00 0.00 4.84
2592 7080 0.944311 AGCTAAGTGTCCGTGCGTTG 60.944 55.000 0.00 0.00 0.00 4.10
2593 7081 1.491563 CTAAGTGTCCGTGCGTTGC 59.508 57.895 0.00 0.00 0.00 4.17
2594 7082 1.897398 CTAAGTGTCCGTGCGTTGCC 61.897 60.000 0.00 0.00 0.00 4.52
2595 7083 2.646117 TAAGTGTCCGTGCGTTGCCA 62.646 55.000 0.00 0.00 0.00 4.92
2596 7084 4.307908 GTGTCCGTGCGTTGCCAC 62.308 66.667 0.00 0.00 0.00 5.01
2605 7093 4.347096 CGTTGCCACGGACTAACA 57.653 55.556 1.68 0.00 43.16 2.41
2606 7094 2.607457 CGTTGCCACGGACTAACAA 58.393 52.632 1.68 0.00 43.16 2.83
2607 7095 0.938713 CGTTGCCACGGACTAACAAA 59.061 50.000 1.68 0.00 43.16 2.83
2608 7096 1.533731 CGTTGCCACGGACTAACAAAT 59.466 47.619 1.68 0.00 43.16 2.32
2609 7097 2.737783 CGTTGCCACGGACTAACAAATA 59.262 45.455 1.68 0.00 43.16 1.40
2610 7098 3.372822 CGTTGCCACGGACTAACAAATAT 59.627 43.478 1.68 0.00 43.16 1.28
2611 7099 4.567558 CGTTGCCACGGACTAACAAATATA 59.432 41.667 1.68 0.00 43.16 0.86
2612 7100 5.501252 CGTTGCCACGGACTAACAAATATAC 60.501 44.000 1.68 0.00 43.16 1.47
2613 7101 5.087391 TGCCACGGACTAACAAATATACA 57.913 39.130 0.00 0.00 0.00 2.29
2614 7102 5.676552 TGCCACGGACTAACAAATATACAT 58.323 37.500 0.00 0.00 0.00 2.29
2615 7103 6.818233 TGCCACGGACTAACAAATATACATA 58.182 36.000 0.00 0.00 0.00 2.29
2616 7104 7.446769 TGCCACGGACTAACAAATATACATAT 58.553 34.615 0.00 0.00 0.00 1.78
2617 7105 8.586744 TGCCACGGACTAACAAATATACATATA 58.413 33.333 0.00 0.00 0.00 0.86
2618 7106 8.866956 GCCACGGACTAACAAATATACATATAC 58.133 37.037 0.00 0.00 0.00 1.47
2619 7107 9.917129 CCACGGACTAACAAATATACATATACA 57.083 33.333 0.00 0.00 0.00 2.29
2641 7129 9.850628 ATACAAAGAGAAAATTCATGTGACATG 57.149 29.630 19.08 19.08 0.00 3.21
2642 7130 7.944061 ACAAAGAGAAAATTCATGTGACATGA 58.056 30.769 23.25 23.25 0.00 3.07
2643 7131 8.080417 ACAAAGAGAAAATTCATGTGACATGAG 58.920 33.333 25.20 13.27 0.00 2.90
2644 7132 7.991084 AAGAGAAAATTCATGTGACATGAGA 57.009 32.000 25.20 17.43 0.00 3.27
2645 7133 7.612668 AGAGAAAATTCATGTGACATGAGAG 57.387 36.000 25.20 1.38 0.00 3.20
2646 7134 7.166851 AGAGAAAATTCATGTGACATGAGAGT 58.833 34.615 25.20 14.39 0.00 3.24
2647 7135 7.333921 AGAGAAAATTCATGTGACATGAGAGTC 59.666 37.037 25.20 20.00 38.99 3.36
2648 7136 6.938596 AGAAAATTCATGTGACATGAGAGTCA 59.061 34.615 25.20 13.00 45.64 3.41
2654 7142 2.479566 TGACATGAGAGTCAAAGGCC 57.520 50.000 0.00 0.00 44.92 5.19
2655 7143 1.699083 TGACATGAGAGTCAAAGGCCA 59.301 47.619 5.01 0.00 44.92 5.36
2656 7144 2.306805 TGACATGAGAGTCAAAGGCCAT 59.693 45.455 5.01 0.00 44.92 4.40
2657 7145 3.245016 TGACATGAGAGTCAAAGGCCATT 60.245 43.478 5.01 0.00 44.92 3.16
2658 7146 3.760684 GACATGAGAGTCAAAGGCCATTT 59.239 43.478 5.01 0.00 38.40 2.32
2659 7147 4.154942 ACATGAGAGTCAAAGGCCATTTT 58.845 39.130 5.01 0.00 0.00 1.82
2660 7148 4.590222 ACATGAGAGTCAAAGGCCATTTTT 59.410 37.500 5.01 0.00 0.00 1.94
2661 7149 5.774690 ACATGAGAGTCAAAGGCCATTTTTA 59.225 36.000 5.01 0.00 0.00 1.52
2662 7150 6.438425 ACATGAGAGTCAAAGGCCATTTTTAT 59.562 34.615 5.01 0.00 0.00 1.40
2663 7151 6.271488 TGAGAGTCAAAGGCCATTTTTATG 57.729 37.500 5.01 0.00 0.00 1.90
2664 7152 5.185635 TGAGAGTCAAAGGCCATTTTTATGG 59.814 40.000 5.01 0.00 44.44 2.74
2665 7153 4.467438 AGAGTCAAAGGCCATTTTTATGGG 59.533 41.667 5.01 0.00 41.94 4.00
2666 7154 4.424842 AGTCAAAGGCCATTTTTATGGGA 58.575 39.130 5.01 0.00 41.94 4.37
2667 7155 5.032170 AGTCAAAGGCCATTTTTATGGGAT 58.968 37.500 5.01 0.00 41.94 3.85
2668 7156 5.104817 AGTCAAAGGCCATTTTTATGGGATG 60.105 40.000 5.01 0.00 41.94 3.51
2669 7157 5.028802 TCAAAGGCCATTTTTATGGGATGA 58.971 37.500 5.01 0.00 41.94 2.92
2670 7158 5.666718 TCAAAGGCCATTTTTATGGGATGAT 59.333 36.000 5.01 0.00 41.94 2.45
2671 7159 6.843333 TCAAAGGCCATTTTTATGGGATGATA 59.157 34.615 5.01 0.00 41.94 2.15
2672 7160 7.513436 TCAAAGGCCATTTTTATGGGATGATAT 59.487 33.333 5.01 0.00 41.94 1.63
2673 7161 7.486407 AAGGCCATTTTTATGGGATGATATC 57.514 36.000 5.01 0.00 41.94 1.63
2674 7162 6.808357 AGGCCATTTTTATGGGATGATATCT 58.192 36.000 5.01 0.00 41.94 1.98
2675 7163 6.894103 AGGCCATTTTTATGGGATGATATCTC 59.106 38.462 5.01 0.00 41.94 2.75
2676 7164 6.664816 GGCCATTTTTATGGGATGATATCTCA 59.335 38.462 0.00 0.00 45.30 3.27
2684 7172 5.431179 TGGGATGATATCTCATGGTCATG 57.569 43.478 3.98 4.67 42.27 3.07
2685 7173 5.095809 TGGGATGATATCTCATGGTCATGA 58.904 41.667 12.41 12.41 42.27 3.07
2686 7174 5.729718 TGGGATGATATCTCATGGTCATGAT 59.270 40.000 13.26 3.69 45.74 2.45
2687 7175 6.126854 TGGGATGATATCTCATGGTCATGATC 60.127 42.308 13.26 0.00 45.74 2.92
2688 7176 6.099990 GGGATGATATCTCATGGTCATGATCT 59.900 42.308 13.26 7.20 45.74 2.75
2689 7177 7.289549 GGGATGATATCTCATGGTCATGATCTA 59.710 40.741 13.26 8.85 45.74 1.98
2690 7178 8.361889 GGATGATATCTCATGGTCATGATCTAG 58.638 40.741 13.26 2.63 45.74 2.43
2691 7179 8.841754 ATGATATCTCATGGTCATGATCTAGT 57.158 34.615 13.26 1.24 45.74 2.57
2692 7180 9.933240 ATGATATCTCATGGTCATGATCTAGTA 57.067 33.333 13.26 4.51 45.74 1.82
2693 7181 9.406113 TGATATCTCATGGTCATGATCTAGTAG 57.594 37.037 13.26 0.17 45.74 2.57
2694 7182 8.765488 ATATCTCATGGTCATGATCTAGTAGG 57.235 38.462 13.26 1.25 45.74 3.18
2695 7183 5.958321 TCTCATGGTCATGATCTAGTAGGT 58.042 41.667 13.26 0.00 45.74 3.08
2696 7184 7.091533 TCTCATGGTCATGATCTAGTAGGTA 57.908 40.000 13.26 0.00 45.74 3.08
2697 7185 6.943146 TCTCATGGTCATGATCTAGTAGGTAC 59.057 42.308 13.26 0.00 45.74 3.34
2698 7186 6.610830 TCATGGTCATGATCTAGTAGGTACA 58.389 40.000 7.64 0.00 42.42 2.90
2699 7187 7.241628 TCATGGTCATGATCTAGTAGGTACAT 58.758 38.462 7.64 0.00 42.42 2.29
2700 7188 8.390921 TCATGGTCATGATCTAGTAGGTACATA 58.609 37.037 7.64 0.00 42.42 2.29
2701 7189 7.997773 TGGTCATGATCTAGTAGGTACATAC 57.002 40.000 9.65 9.65 0.00 2.39
2702 7190 7.523415 TGGTCATGATCTAGTAGGTACATACA 58.477 38.462 19.01 5.30 0.00 2.29
2703 7191 8.170730 TGGTCATGATCTAGTAGGTACATACAT 58.829 37.037 19.01 4.74 0.00 2.29
2704 7192 8.679100 GGTCATGATCTAGTAGGTACATACATC 58.321 40.741 19.01 13.24 0.00 3.06
2705 7193 9.456147 GTCATGATCTAGTAGGTACATACATCT 57.544 37.037 19.01 2.15 0.00 2.90
2706 7194 9.674068 TCATGATCTAGTAGGTACATACATCTC 57.326 37.037 19.01 10.40 0.00 2.75
2707 7195 8.608317 CATGATCTAGTAGGTACATACATCTCG 58.392 40.741 19.01 6.08 0.00 4.04
2708 7196 7.677892 TGATCTAGTAGGTACATACATCTCGT 58.322 38.462 19.01 0.75 0.00 4.18
2709 7197 7.818446 TGATCTAGTAGGTACATACATCTCGTC 59.182 40.741 19.01 9.67 0.00 4.20
2710 7198 7.059202 TCTAGTAGGTACATACATCTCGTCA 57.941 40.000 19.01 0.00 0.00 4.35
2711 7199 7.677892 TCTAGTAGGTACATACATCTCGTCAT 58.322 38.462 19.01 0.00 0.00 3.06
2712 7200 8.155510 TCTAGTAGGTACATACATCTCGTCATT 58.844 37.037 19.01 0.00 0.00 2.57
2713 7201 6.971602 AGTAGGTACATACATCTCGTCATTG 58.028 40.000 19.01 0.00 0.00 2.82
2714 7202 5.854010 AGGTACATACATCTCGTCATTGT 57.146 39.130 0.00 0.00 0.00 2.71
2715 7203 5.833082 AGGTACATACATCTCGTCATTGTC 58.167 41.667 0.00 0.00 0.00 3.18
2716 7204 5.594725 AGGTACATACATCTCGTCATTGTCT 59.405 40.000 0.00 0.00 0.00 3.41
2717 7205 6.096987 AGGTACATACATCTCGTCATTGTCTT 59.903 38.462 0.00 0.00 0.00 3.01
2718 7206 6.757010 GGTACATACATCTCGTCATTGTCTTT 59.243 38.462 0.00 0.00 0.00 2.52
2719 7207 6.893958 ACATACATCTCGTCATTGTCTTTC 57.106 37.500 0.00 0.00 0.00 2.62
2720 7208 6.634805 ACATACATCTCGTCATTGTCTTTCT 58.365 36.000 0.00 0.00 0.00 2.52
2721 7209 7.099764 ACATACATCTCGTCATTGTCTTTCTT 58.900 34.615 0.00 0.00 0.00 2.52
2722 7210 7.276658 ACATACATCTCGTCATTGTCTTTCTTC 59.723 37.037 0.00 0.00 0.00 2.87
2723 7211 4.932200 ACATCTCGTCATTGTCTTTCTTCC 59.068 41.667 0.00 0.00 0.00 3.46
2724 7212 4.600692 TCTCGTCATTGTCTTTCTTCCA 57.399 40.909 0.00 0.00 0.00 3.53
2725 7213 4.307432 TCTCGTCATTGTCTTTCTTCCAC 58.693 43.478 0.00 0.00 0.00 4.02
2726 7214 4.058124 CTCGTCATTGTCTTTCTTCCACA 58.942 43.478 0.00 0.00 0.00 4.17
2727 7215 3.807622 TCGTCATTGTCTTTCTTCCACAC 59.192 43.478 0.00 0.00 0.00 3.82
2728 7216 3.809832 CGTCATTGTCTTTCTTCCACACT 59.190 43.478 0.00 0.00 0.00 3.55
2729 7217 4.084328 CGTCATTGTCTTTCTTCCACACTC 60.084 45.833 0.00 0.00 0.00 3.51
2730 7218 4.214332 GTCATTGTCTTTCTTCCACACTCC 59.786 45.833 0.00 0.00 0.00 3.85
2731 7219 3.924114 TTGTCTTTCTTCCACACTCCA 57.076 42.857 0.00 0.00 0.00 3.86
2732 7220 4.437682 TTGTCTTTCTTCCACACTCCAT 57.562 40.909 0.00 0.00 0.00 3.41
2733 7221 3.743521 TGTCTTTCTTCCACACTCCATG 58.256 45.455 0.00 0.00 0.00 3.66
2734 7222 3.136443 TGTCTTTCTTCCACACTCCATGT 59.864 43.478 0.00 0.00 44.81 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.165998 GCAGCAAGATTCCAACCTCTT 58.834 47.619 0.00 0.00 31.97 2.85
3 4 1.831580 AGCAGCAAGATTCCAACCTC 58.168 50.000 0.00 0.00 0.00 3.85
4 5 1.891150 CAAGCAGCAAGATTCCAACCT 59.109 47.619 0.00 0.00 0.00 3.50
5 6 1.067354 CCAAGCAGCAAGATTCCAACC 60.067 52.381 0.00 0.00 0.00 3.77
7 8 1.888512 GACCAAGCAGCAAGATTCCAA 59.111 47.619 0.00 0.00 0.00 3.53
8 9 1.538047 GACCAAGCAGCAAGATTCCA 58.462 50.000 0.00 0.00 0.00 3.53
10 11 0.179179 GCGACCAAGCAGCAAGATTC 60.179 55.000 0.00 0.00 37.05 2.52
11 12 1.589716 GGCGACCAAGCAGCAAGATT 61.590 55.000 0.00 0.00 39.27 2.40
12 13 2.042831 GGCGACCAAGCAGCAAGAT 61.043 57.895 0.00 0.00 39.27 2.40
14 15 4.093952 CGGCGACCAAGCAGCAAG 62.094 66.667 0.00 0.00 39.27 4.01
35 36 0.547471 TGATTGCTCACCTCCAGGGA 60.547 55.000 0.00 0.00 40.27 4.20
36 37 0.107312 CTGATTGCTCACCTCCAGGG 60.107 60.000 0.00 0.00 40.27 4.45
37 38 0.907486 TCTGATTGCTCACCTCCAGG 59.093 55.000 0.00 0.00 42.17 4.45
38 39 1.743091 GCTCTGATTGCTCACCTCCAG 60.743 57.143 0.00 0.00 0.00 3.86
39 40 0.251354 GCTCTGATTGCTCACCTCCA 59.749 55.000 0.00 0.00 0.00 3.86
40 41 0.809241 CGCTCTGATTGCTCACCTCC 60.809 60.000 0.00 0.00 0.00 4.30
41 42 1.427592 GCGCTCTGATTGCTCACCTC 61.428 60.000 0.00 0.00 0.00 3.85
42 43 1.449246 GCGCTCTGATTGCTCACCT 60.449 57.895 0.00 0.00 0.00 4.00
44 45 1.427592 GAGGCGCTCTGATTGCTCAC 61.428 60.000 7.64 0.00 0.00 3.51
46 47 1.143620 AGAGGCGCTCTGATTGCTC 59.856 57.895 7.64 2.23 39.62 4.26
47 48 3.307445 AGAGGCGCTCTGATTGCT 58.693 55.556 7.64 0.00 39.62 3.91
54 55 2.027745 TCTGATTTTTCAGAGGCGCTCT 60.028 45.455 7.64 5.36 42.11 4.09
55 56 2.350522 TCTGATTTTTCAGAGGCGCTC 58.649 47.619 7.64 2.67 41.34 5.03
56 57 2.479566 TCTGATTTTTCAGAGGCGCT 57.520 45.000 7.64 0.00 41.34 5.92
57 58 3.772060 ATTCTGATTTTTCAGAGGCGC 57.228 42.857 0.00 0.00 46.04 6.53
58 59 7.117523 CCTCTATATTCTGATTTTTCAGAGGCG 59.882 40.741 5.88 0.00 46.04 5.52
59 60 8.321650 CCTCTATATTCTGATTTTTCAGAGGC 57.678 38.462 5.88 0.00 46.04 4.70
60 61 8.156165 AGCCTCTATATTCTGATTTTTCAGAGG 58.844 37.037 9.02 9.02 46.04 3.69
61 62 8.991026 CAGCCTCTATATTCTGATTTTTCAGAG 58.009 37.037 5.88 0.00 46.04 3.35
62 63 8.708378 TCAGCCTCTATATTCTGATTTTTCAGA 58.292 33.333 1.65 1.65 44.15 3.27
63 64 8.899427 TCAGCCTCTATATTCTGATTTTTCAG 57.101 34.615 0.00 0.00 39.00 3.02
64 65 9.281371 CATCAGCCTCTATATTCTGATTTTTCA 57.719 33.333 1.28 0.00 42.46 2.69
65 66 9.282569 ACATCAGCCTCTATATTCTGATTTTTC 57.717 33.333 1.28 0.00 42.46 2.29
66 67 9.638176 AACATCAGCCTCTATATTCTGATTTTT 57.362 29.630 1.28 0.00 42.46 1.94
149 2505 3.489738 GCGTGCCATCTTATGAGCATTTT 60.490 43.478 6.41 0.00 38.23 1.82
159 2515 0.322456 AGCCAAAGCGTGCCATCTTA 60.322 50.000 0.00 0.00 46.67 2.10
161 2517 0.322456 TTAGCCAAAGCGTGCCATCT 60.322 50.000 0.00 0.00 46.67 2.90
181 2537 7.010339 AGCTACAAGTCCATCTTTTACTCTT 57.990 36.000 0.00 0.00 33.63 2.85
198 2554 9.691362 GGAAAATCTTACAATTTTGAGCTACAA 57.309 29.630 0.00 0.00 38.59 2.41
298 2654 7.365652 CCCCATGTATAAGAAAGTCAAGTAGGT 60.366 40.741 0.00 0.00 0.00 3.08
340 2696 2.837031 GAAATTGAGGCCCCGGAGCA 62.837 60.000 11.18 0.00 0.00 4.26
376 2732 9.120538 GCTTACTCCACTTATGAATTAATCCAA 57.879 33.333 0.00 0.00 0.00 3.53
395 2751 6.062434 TCGCTTCTACTCTAATGCTTACTC 57.938 41.667 0.00 0.00 0.00 2.59
436 2792 9.856488 AAATGTAGTATGGCATTATACTCTACG 57.144 33.333 4.78 0.00 41.63 3.51
519 2878 1.349357 GAGGAAAGTGGGAGCAGTTCT 59.651 52.381 0.00 0.00 0.00 3.01
608 3294 2.282180 GATGGGCCCAACGTGTGT 60.282 61.111 32.58 10.83 0.00 3.72
648 3335 1.401148 CGACGTCTCACCGACTTGATT 60.401 52.381 14.70 0.00 40.59 2.57
656 3343 1.879646 CTAAAGACGACGTCTCACCG 58.120 55.000 29.31 14.79 42.59 4.94
662 3349 2.157073 GGCCGCTAAAGACGACGTC 61.157 63.158 20.25 20.25 0.00 4.34
673 3360 1.450491 TTTGCGCAATAGGCCGCTA 60.450 52.632 25.64 1.84 40.85 4.26
881 5016 1.834188 CAGGGACGTTAATGGGCTTT 58.166 50.000 0.00 0.00 0.00 3.51
1126 5265 1.654137 CACAAGCACGGCGTTTGTC 60.654 57.895 22.98 8.38 44.84 3.18
1238 5398 4.954118 AGTCCTCCGCCACCACCA 62.954 66.667 0.00 0.00 0.00 4.17
1896 6079 6.823531 TCAAATCAAATCGTAACGGTGTTAG 58.176 36.000 0.00 0.00 0.00 2.34
2021 6223 1.198637 GCACAGGCTCTTTTGCTAGTG 59.801 52.381 0.00 0.00 39.10 2.74
2070 6273 5.804944 AAATGTGGTCATTGTCAATGGAA 57.195 34.783 22.44 8.28 42.60 3.53
2094 6297 5.823209 AAATCATGCGATGAGATGTCAAA 57.177 34.783 0.00 0.00 43.53 2.69
2288 6494 2.134789 AACTGCTGGGATGGATTGAC 57.865 50.000 0.00 0.00 0.00 3.18
2297 6503 5.385198 ACTTTGAAGAATTAACTGCTGGGA 58.615 37.500 0.00 0.00 0.00 4.37
2301 6507 6.430451 CGTGAACTTTGAAGAATTAACTGCT 58.570 36.000 0.00 0.00 0.00 4.24
2319 6525 1.662122 CAAAGGTATACCCGCGTGAAC 59.338 52.381 18.65 0.00 38.74 3.18
2515 7003 3.605486 GCTGATTCAGAAAATGTTCGTGC 59.395 43.478 17.87 0.00 38.90 5.34
2571 7059 0.170561 ACGCACGGACACTTAGCTAG 59.829 55.000 0.00 0.00 0.00 3.42
2572 7060 0.599558 AACGCACGGACACTTAGCTA 59.400 50.000 0.00 0.00 0.00 3.32
2573 7061 0.944311 CAACGCACGGACACTTAGCT 60.944 55.000 0.00 0.00 0.00 3.32
2574 7062 1.491563 CAACGCACGGACACTTAGC 59.508 57.895 0.00 0.00 0.00 3.09
2575 7063 1.491563 GCAACGCACGGACACTTAG 59.508 57.895 0.00 0.00 0.00 2.18
2576 7064 1.957186 GGCAACGCACGGACACTTA 60.957 57.895 0.00 0.00 0.00 2.24
2577 7065 3.276846 GGCAACGCACGGACACTT 61.277 61.111 0.00 0.00 0.00 3.16
2578 7066 4.539083 TGGCAACGCACGGACACT 62.539 61.111 0.00 0.00 42.51 3.55
2589 7077 4.957759 ATATTTGTTAGTCCGTGGCAAC 57.042 40.909 0.00 0.00 0.00 4.17
2590 7078 5.489249 TGTATATTTGTTAGTCCGTGGCAA 58.511 37.500 0.00 0.00 0.00 4.52
2591 7079 5.087391 TGTATATTTGTTAGTCCGTGGCA 57.913 39.130 0.00 0.00 0.00 4.92
2592 7080 7.900782 ATATGTATATTTGTTAGTCCGTGGC 57.099 36.000 0.00 0.00 0.00 5.01
2593 7081 9.917129 TGTATATGTATATTTGTTAGTCCGTGG 57.083 33.333 0.00 0.00 0.00 4.94
2615 7103 9.850628 CATGTCACATGAATTTTCTCTTTGTAT 57.149 29.630 12.92 0.00 0.00 2.29
2616 7104 9.065798 TCATGTCACATGAATTTTCTCTTTGTA 57.934 29.630 18.54 0.00 0.00 2.41
2617 7105 7.944061 TCATGTCACATGAATTTTCTCTTTGT 58.056 30.769 18.54 0.00 0.00 2.83
2618 7106 8.294577 TCTCATGTCACATGAATTTTCTCTTTG 58.705 33.333 20.99 5.55 0.00 2.77
2619 7107 8.400184 TCTCATGTCACATGAATTTTCTCTTT 57.600 30.769 20.99 0.00 0.00 2.52
2620 7108 7.664731 ACTCTCATGTCACATGAATTTTCTCTT 59.335 33.333 20.99 0.00 0.00 2.85
2621 7109 7.166851 ACTCTCATGTCACATGAATTTTCTCT 58.833 34.615 20.99 0.00 0.00 3.10
2622 7110 7.118825 TGACTCTCATGTCACATGAATTTTCTC 59.881 37.037 20.99 10.21 41.43 2.87
2623 7111 6.938596 TGACTCTCATGTCACATGAATTTTCT 59.061 34.615 20.99 1.44 41.43 2.52
2624 7112 7.137490 TGACTCTCATGTCACATGAATTTTC 57.863 36.000 20.99 14.44 41.43 2.29
2625 7113 7.514784 TTGACTCTCATGTCACATGAATTTT 57.485 32.000 20.99 6.28 45.32 1.82
2626 7114 7.309012 CCTTTGACTCTCATGTCACATGAATTT 60.309 37.037 20.99 8.02 45.32 1.82
2627 7115 6.150641 CCTTTGACTCTCATGTCACATGAATT 59.849 38.462 20.99 8.37 45.32 2.17
2628 7116 5.646793 CCTTTGACTCTCATGTCACATGAAT 59.353 40.000 20.99 9.90 45.32 2.57
2629 7117 4.999311 CCTTTGACTCTCATGTCACATGAA 59.001 41.667 20.99 11.23 45.32 2.57
2630 7118 4.572909 CCTTTGACTCTCATGTCACATGA 58.427 43.478 19.57 19.57 45.32 3.07
2631 7119 3.126514 GCCTTTGACTCTCATGTCACATG 59.873 47.826 11.96 11.96 45.32 3.21
2632 7120 3.341823 GCCTTTGACTCTCATGTCACAT 58.658 45.455 0.00 0.00 45.32 3.21
2633 7121 2.550855 GGCCTTTGACTCTCATGTCACA 60.551 50.000 0.00 0.00 45.32 3.58
2634 7122 2.079925 GGCCTTTGACTCTCATGTCAC 58.920 52.381 0.00 0.00 45.32 3.67
2635 7123 1.699083 TGGCCTTTGACTCTCATGTCA 59.301 47.619 3.32 0.00 44.17 3.58
2636 7124 2.479566 TGGCCTTTGACTCTCATGTC 57.520 50.000 3.32 0.00 37.47 3.06
2637 7125 3.446442 AATGGCCTTTGACTCTCATGT 57.554 42.857 3.32 0.00 0.00 3.21
2638 7126 4.796038 AAAATGGCCTTTGACTCTCATG 57.204 40.909 3.32 0.00 0.00 3.07
2639 7127 6.127253 CCATAAAAATGGCCTTTGACTCTCAT 60.127 38.462 3.32 0.00 34.56 2.90
2640 7128 5.185635 CCATAAAAATGGCCTTTGACTCTCA 59.814 40.000 3.32 0.00 34.56 3.27
2641 7129 5.394553 CCCATAAAAATGGCCTTTGACTCTC 60.395 44.000 3.32 0.00 40.35 3.20
2642 7130 4.467438 CCCATAAAAATGGCCTTTGACTCT 59.533 41.667 3.32 0.00 40.35 3.24
2643 7131 4.466015 TCCCATAAAAATGGCCTTTGACTC 59.534 41.667 3.32 0.00 40.35 3.36
2644 7132 4.424842 TCCCATAAAAATGGCCTTTGACT 58.575 39.130 3.32 0.00 40.35 3.41
2645 7133 4.817318 TCCCATAAAAATGGCCTTTGAC 57.183 40.909 3.32 0.00 40.35 3.18
2646 7134 5.028802 TCATCCCATAAAAATGGCCTTTGA 58.971 37.500 3.32 0.00 40.35 2.69
2647 7135 5.356291 TCATCCCATAAAAATGGCCTTTG 57.644 39.130 3.32 0.00 40.35 2.77
2648 7136 7.736234 AGATATCATCCCATAAAAATGGCCTTT 59.264 33.333 3.32 0.00 40.35 3.11
2649 7137 7.251195 AGATATCATCCCATAAAAATGGCCTT 58.749 34.615 3.32 0.00 40.35 4.35
2650 7138 6.808357 AGATATCATCCCATAAAAATGGCCT 58.192 36.000 3.32 0.00 40.35 5.19
2651 7139 6.664816 TGAGATATCATCCCATAAAAATGGCC 59.335 38.462 5.32 0.00 40.35 5.36
2652 7140 7.707624 TGAGATATCATCCCATAAAAATGGC 57.292 36.000 5.32 0.00 40.35 4.40
2653 7141 8.692710 CCATGAGATATCATCCCATAAAAATGG 58.307 37.037 5.32 0.00 41.34 3.16
2654 7142 9.251440 ACCATGAGATATCATCCCATAAAAATG 57.749 33.333 5.32 0.00 0.00 2.32
2655 7143 9.471702 GACCATGAGATATCATCCCATAAAAAT 57.528 33.333 5.32 0.00 0.00 1.82
2656 7144 8.447200 TGACCATGAGATATCATCCCATAAAAA 58.553 33.333 5.32 0.00 0.00 1.94
2657 7145 7.987820 TGACCATGAGATATCATCCCATAAAA 58.012 34.615 5.32 0.00 0.00 1.52
2658 7146 7.572546 TGACCATGAGATATCATCCCATAAA 57.427 36.000 5.32 0.00 0.00 1.40
2659 7147 7.403813 TCATGACCATGAGATATCATCCCATAA 59.596 37.037 8.49 0.00 42.42 1.90
2660 7148 6.904654 TCATGACCATGAGATATCATCCCATA 59.095 38.462 8.49 0.00 42.42 2.74
2661 7149 5.729718 TCATGACCATGAGATATCATCCCAT 59.270 40.000 8.49 1.88 42.42 4.00
2662 7150 5.095809 TCATGACCATGAGATATCATCCCA 58.904 41.667 8.49 0.00 42.42 4.37
2663 7151 5.688814 TCATGACCATGAGATATCATCCC 57.311 43.478 8.49 0.00 42.42 3.85
2675 7163 6.901081 TGTACCTACTAGATCATGACCATG 57.099 41.667 0.00 3.70 40.09 3.66
2676 7164 8.170730 TGTATGTACCTACTAGATCATGACCAT 58.829 37.037 0.00 0.00 0.00 3.55
2677 7165 7.523415 TGTATGTACCTACTAGATCATGACCA 58.477 38.462 0.00 0.00 0.00 4.02
2678 7166 7.997773 TGTATGTACCTACTAGATCATGACC 57.002 40.000 0.00 0.00 0.00 4.02
2679 7167 9.456147 AGATGTATGTACCTACTAGATCATGAC 57.544 37.037 0.00 0.00 0.00 3.06
2680 7168 9.674068 GAGATGTATGTACCTACTAGATCATGA 57.326 37.037 0.00 0.00 0.00 3.07
2681 7169 8.608317 CGAGATGTATGTACCTACTAGATCATG 58.392 40.741 9.35 0.00 0.00 3.07
2682 7170 8.322828 ACGAGATGTATGTACCTACTAGATCAT 58.677 37.037 9.35 0.00 0.00 2.45
2683 7171 7.677892 ACGAGATGTATGTACCTACTAGATCA 58.322 38.462 9.35 0.00 0.00 2.92
2684 7172 7.818446 TGACGAGATGTATGTACCTACTAGATC 59.182 40.741 9.35 4.95 0.00 2.75
2685 7173 7.677892 TGACGAGATGTATGTACCTACTAGAT 58.322 38.462 9.35 0.00 0.00 1.98
2686 7174 7.059202 TGACGAGATGTATGTACCTACTAGA 57.941 40.000 9.35 0.00 0.00 2.43
2687 7175 7.908827 ATGACGAGATGTATGTACCTACTAG 57.091 40.000 9.35 0.00 0.00 2.57
2688 7176 7.718314 ACAATGACGAGATGTATGTACCTACTA 59.282 37.037 9.35 0.00 0.00 1.82
2689 7177 6.546403 ACAATGACGAGATGTATGTACCTACT 59.454 38.462 9.35 0.00 0.00 2.57
2690 7178 6.736123 ACAATGACGAGATGTATGTACCTAC 58.264 40.000 1.66 1.66 0.00 3.18
2691 7179 6.771267 AGACAATGACGAGATGTATGTACCTA 59.229 38.462 0.00 0.00 0.00 3.08
2692 7180 5.594725 AGACAATGACGAGATGTATGTACCT 59.405 40.000 0.00 0.00 0.00 3.08
2693 7181 5.833082 AGACAATGACGAGATGTATGTACC 58.167 41.667 0.00 0.00 0.00 3.34
2694 7182 7.702772 AGAAAGACAATGACGAGATGTATGTAC 59.297 37.037 0.00 0.00 0.00 2.90
2695 7183 7.772166 AGAAAGACAATGACGAGATGTATGTA 58.228 34.615 0.00 0.00 0.00 2.29
2696 7184 6.634805 AGAAAGACAATGACGAGATGTATGT 58.365 36.000 0.00 0.00 0.00 2.29
2697 7185 7.254252 GGAAGAAAGACAATGACGAGATGTATG 60.254 40.741 0.00 0.00 0.00 2.39
2698 7186 6.758886 GGAAGAAAGACAATGACGAGATGTAT 59.241 38.462 0.00 0.00 0.00 2.29
2699 7187 6.100004 GGAAGAAAGACAATGACGAGATGTA 58.900 40.000 0.00 0.00 0.00 2.29
2700 7188 4.932200 GGAAGAAAGACAATGACGAGATGT 59.068 41.667 0.00 0.00 0.00 3.06
2701 7189 4.931601 TGGAAGAAAGACAATGACGAGATG 59.068 41.667 0.00 0.00 0.00 2.90
2702 7190 4.932200 GTGGAAGAAAGACAATGACGAGAT 59.068 41.667 0.00 0.00 0.00 2.75
2703 7191 4.202212 TGTGGAAGAAAGACAATGACGAGA 60.202 41.667 0.00 0.00 0.00 4.04
2704 7192 4.058124 TGTGGAAGAAAGACAATGACGAG 58.942 43.478 0.00 0.00 0.00 4.18
2705 7193 3.807622 GTGTGGAAGAAAGACAATGACGA 59.192 43.478 0.00 0.00 0.00 4.20
2706 7194 3.809832 AGTGTGGAAGAAAGACAATGACG 59.190 43.478 0.00 0.00 0.00 4.35
2707 7195 4.214332 GGAGTGTGGAAGAAAGACAATGAC 59.786 45.833 0.00 0.00 0.00 3.06
2708 7196 4.141505 TGGAGTGTGGAAGAAAGACAATGA 60.142 41.667 0.00 0.00 0.00 2.57
2709 7197 4.136796 TGGAGTGTGGAAGAAAGACAATG 58.863 43.478 0.00 0.00 0.00 2.82
2710 7198 4.437682 TGGAGTGTGGAAGAAAGACAAT 57.562 40.909 0.00 0.00 0.00 2.71
2711 7199 3.924114 TGGAGTGTGGAAGAAAGACAA 57.076 42.857 0.00 0.00 0.00 3.18
2712 7200 3.136443 ACATGGAGTGTGGAAGAAAGACA 59.864 43.478 0.00 0.00 40.28 3.41
2713 7201 3.744660 ACATGGAGTGTGGAAGAAAGAC 58.255 45.455 0.00 0.00 40.28 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.