Multiple sequence alignment - TraesCS7A01G439200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G439200 chr7A 100.000 2444 0 0 1 2444 634387076 634389519 0.000000e+00 4514.0
1 TraesCS7A01G439200 chr7A 91.573 178 11 2 1703 1878 182475417 182475242 2.430000e-60 243.0
2 TraesCS7A01G439200 chr7A 91.011 178 12 2 1703 1878 454353133 454353308 1.130000e-58 237.0
3 TraesCS7A01G439200 chr7A 86.364 220 12 7 1703 1906 508091878 508091661 8.790000e-55 224.0
4 TraesCS7A01G439200 chr7D 92.785 1691 83 21 1 1663 548893568 548895247 0.000000e+00 2410.0
5 TraesCS7A01G439200 chr7D 83.810 105 9 6 2286 2386 52328024 52327924 2.590000e-15 93.5
6 TraesCS7A01G439200 chr7B 88.325 1696 108 35 1 1639 592511258 592512920 0.000000e+00 1953.0
7 TraesCS7A01G439200 chr7B 91.892 111 6 3 2310 2419 592513474 592513582 4.210000e-33 152.0
8 TraesCS7A01G439200 chr7B 90.588 85 5 3 2287 2370 592513392 592513474 2.570000e-20 110.0
9 TraesCS7A01G439200 chr1A 92.233 206 13 3 1703 1906 560964390 560964186 3.070000e-74 289.0
10 TraesCS7A01G439200 chr1A 83.654 104 11 6 2286 2386 218481228 218481128 2.590000e-15 93.5
11 TraesCS7A01G439200 chr5A 92.135 178 11 2 1703 1878 514409661 514409485 5.220000e-62 248.0
12 TraesCS7A01G439200 chr5A 90.449 178 13 2 1703 1878 555335028 555334853 5.260000e-57 231.0
13 TraesCS7A01G439200 chr5A 85.321 109 10 6 2285 2390 232836201 232836306 9.240000e-20 108.0
14 TraesCS7A01G439200 chr5A 84.762 105 7 9 2286 2386 567930040 567929941 2.000000e-16 97.1
15 TraesCS7A01G439200 chr3A 91.011 178 12 2 1703 1878 526617768 526617943 1.130000e-58 237.0
16 TraesCS7A01G439200 chr3A 90.960 177 13 2 1703 1878 577625770 577625596 4.060000e-58 235.0
17 TraesCS7A01G439200 chr3A 90.449 178 13 2 1703 1878 503717555 503717730 5.260000e-57 231.0
18 TraesCS7A01G439200 chr3A 94.545 55 3 0 1853 1907 28268752 28268806 4.330000e-13 86.1
19 TraesCS7A01G439200 chr3A 94.231 52 2 1 1859 1909 577625587 577625536 7.250000e-11 78.7
20 TraesCS7A01G439200 chr3A 91.228 57 4 1 1854 1909 572641290 572641234 2.610000e-10 76.8
21 TraesCS7A01G439200 chr3A 92.857 42 1 2 1873 1913 503717753 503717793 2.620000e-05 60.2
22 TraesCS7A01G439200 chr6A 89.831 177 16 2 1703 1878 581862663 581862838 2.450000e-55 226.0
23 TraesCS7A01G439200 chr4A 90.132 152 11 3 1703 1852 491513693 491513544 6.900000e-46 195.0
24 TraesCS7A01G439200 chr5D 86.538 104 10 4 2285 2386 195652551 195652652 7.140000e-21 111.0
25 TraesCS7A01G439200 chr6B 85.714 105 9 6 2285 2386 643147895 643147996 3.320000e-19 106.0
26 TraesCS7A01G439200 chr2A 84.404 109 13 4 2285 2390 593489856 593489749 1.200000e-18 104.0
27 TraesCS7A01G439200 chrUn 94.444 54 3 0 1854 1907 88054108 88054055 1.560000e-12 84.2
28 TraesCS7A01G439200 chr3B 94.340 53 3 0 1854 1906 517863200 517863252 5.600000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G439200 chr7A 634387076 634389519 2443 False 4514.000000 4514 100.000000 1 2444 1 chr7A.!!$F2 2443
1 TraesCS7A01G439200 chr7D 548893568 548895247 1679 False 2410.000000 2410 92.785000 1 1663 1 chr7D.!!$F1 1662
2 TraesCS7A01G439200 chr7B 592511258 592513582 2324 False 738.333333 1953 90.268333 1 2419 3 chr7B.!!$F1 2418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 874 0.037882 CAGCCTGCGTGAGAAAGAGA 60.038 55.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2050 0.03601 CAGCCCACGGTTGAGATTCT 60.036 55.0 0.0 0.0 35.94 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.196901 TCGGCAAAGTTGAATAGCTCCTA 59.803 43.478 0.00 0.00 0.00 2.94
37 38 3.309954 CGGCAAAGTTGAATAGCTCCTAC 59.690 47.826 0.00 0.00 0.00 3.18
38 39 4.518249 GGCAAAGTTGAATAGCTCCTACT 58.482 43.478 0.00 0.00 0.00 2.57
103 110 4.728608 GCGGCTGTTATCTTTGTAATTTCG 59.271 41.667 0.00 0.00 0.00 3.46
114 121 3.485947 TGTAATTTCGTTGCATGAGCC 57.514 42.857 0.00 0.00 41.13 4.70
240 257 1.678101 GTGCCAAGCATCCTGTAATCC 59.322 52.381 0.00 0.00 41.91 3.01
256 276 4.085876 CCAACTGTTGGCTGAGGG 57.914 61.111 25.21 1.53 45.17 4.30
259 279 1.402787 CAACTGTTGGCTGAGGGTTT 58.597 50.000 12.66 0.00 0.00 3.27
280 300 3.124921 GGTTCGGTGCATCGGGTG 61.125 66.667 21.08 0.00 0.00 4.61
319 339 3.516615 CCAAGAGAAGCTACTGTGTAGC 58.483 50.000 18.65 18.65 40.67 3.58
328 348 3.127203 AGCTACTGTGTAGCGAGTTACTG 59.873 47.826 19.70 0.00 44.73 2.74
635 675 4.771590 TGCAGGCAAAGTCTCAAATTAG 57.228 40.909 0.00 0.00 0.00 1.73
738 779 2.827423 CAGCAGATCCCCATCGCT 59.173 61.111 0.00 0.00 38.57 4.93
754 795 0.725686 CGCTGACCTGAAGCATCTTG 59.274 55.000 0.00 0.00 40.86 3.02
810 874 0.037882 CAGCCTGCGTGAGAAAGAGA 60.038 55.000 0.00 0.00 0.00 3.10
813 877 2.079925 GCCTGCGTGAGAAAGAGAAAT 58.920 47.619 0.00 0.00 0.00 2.17
830 894 3.746492 AGAAATGCTTCTTCGTGTACACC 59.254 43.478 20.11 4.91 38.89 4.16
902 966 2.622903 TAAATCCGTCCGCAGCCTCG 62.623 60.000 0.00 0.00 0.00 4.63
917 981 1.026718 CCTCGCCACATCTTCCCAAC 61.027 60.000 0.00 0.00 0.00 3.77
1442 1509 3.454573 CGGCGGGCAGTACCAGTA 61.455 66.667 0.00 0.00 42.05 2.74
1448 1515 0.540454 GGGCAGTACCAGTAAGACCC 59.460 60.000 0.00 0.00 42.05 4.46
1475 1542 1.001048 GACTACGGCCATGTATGCGTA 60.001 52.381 2.24 0.00 31.04 4.42
1476 1543 1.616865 ACTACGGCCATGTATGCGTAT 59.383 47.619 2.24 0.00 31.69 3.06
1505 1582 0.535335 TCCGGTTCAGGTGTATCAGC 59.465 55.000 0.00 0.00 0.00 4.26
1533 1613 8.206867 TCAGTGTAGCAGAGCAATAATTATCTT 58.793 33.333 0.00 0.00 0.00 2.40
1583 1666 0.729690 GCTTTTCACGGCCTCTCATC 59.270 55.000 0.00 0.00 0.00 2.92
1598 1681 1.532794 CATCCCCTCTCTCCCCGAG 60.533 68.421 0.00 0.00 41.30 4.63
1609 1692 2.817258 CTCTCCCCGAGAATGCTACTAG 59.183 54.545 0.00 0.00 42.62 2.57
1614 1697 3.057174 CCCCGAGAATGCTACTAGACATC 60.057 52.174 0.00 0.00 0.00 3.06
1615 1698 3.823873 CCCGAGAATGCTACTAGACATCT 59.176 47.826 0.00 0.00 0.00 2.90
1679 2042 4.436998 GGAGACCACTCGCCCGTG 62.437 72.222 0.00 0.00 43.44 4.94
1680 2043 3.681835 GAGACCACTCGCCCGTGT 61.682 66.667 0.13 0.00 33.32 4.49
1681 2044 3.628280 GAGACCACTCGCCCGTGTC 62.628 68.421 0.13 0.00 33.32 3.67
1682 2045 3.681835 GACCACTCGCCCGTGTCT 61.682 66.667 0.13 0.00 33.07 3.41
1685 2048 2.317609 CCACTCGCCCGTGTCTTTG 61.318 63.158 0.13 0.00 33.07 2.77
1686 2049 2.030562 ACTCGCCCGTGTCTTTGG 59.969 61.111 0.00 0.00 0.00 3.28
1687 2050 2.342279 CTCGCCCGTGTCTTTGGA 59.658 61.111 0.00 0.00 0.00 3.53
1688 2051 1.738099 CTCGCCCGTGTCTTTGGAG 60.738 63.158 0.00 0.00 0.00 3.86
1689 2052 2.154798 CTCGCCCGTGTCTTTGGAGA 62.155 60.000 0.00 0.00 0.00 3.71
1692 2055 1.087501 GCCCGTGTCTTTGGAGAATC 58.912 55.000 0.00 0.00 32.66 2.52
1694 2057 2.622436 CCCGTGTCTTTGGAGAATCTC 58.378 52.381 0.71 0.71 32.66 2.75
1695 2058 2.028112 CCCGTGTCTTTGGAGAATCTCA 60.028 50.000 12.79 0.00 32.66 3.27
1698 2061 3.433615 CGTGTCTTTGGAGAATCTCAACC 59.566 47.826 12.79 0.00 32.66 3.77
1699 2062 3.433615 GTGTCTTTGGAGAATCTCAACCG 59.566 47.826 12.79 0.00 32.66 4.44
1700 2063 3.071023 TGTCTTTGGAGAATCTCAACCGT 59.929 43.478 12.79 0.00 32.66 4.83
1701 2064 3.433615 GTCTTTGGAGAATCTCAACCGTG 59.566 47.826 12.79 0.00 32.66 4.94
1702 2065 2.472695 TTGGAGAATCTCAACCGTGG 57.527 50.000 12.79 0.00 33.73 4.94
1703 2066 0.613260 TGGAGAATCTCAACCGTGGG 59.387 55.000 12.79 0.00 33.73 4.61
1704 2067 0.744771 GGAGAATCTCAACCGTGGGC 60.745 60.000 12.79 0.00 33.73 5.36
1705 2068 0.250513 GAGAATCTCAACCGTGGGCT 59.749 55.000 5.22 0.00 0.00 5.19
1706 2069 0.036010 AGAATCTCAACCGTGGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
1707 2070 1.648467 GAATCTCAACCGTGGGCTGC 61.648 60.000 0.00 0.00 0.00 5.25
1708 2071 2.410322 AATCTCAACCGTGGGCTGCA 62.410 55.000 0.50 0.00 0.00 4.41
1709 2072 2.202236 ATCTCAACCGTGGGCTGCAT 62.202 55.000 0.50 0.00 0.00 3.96
1710 2073 1.973281 CTCAACCGTGGGCTGCATT 60.973 57.895 0.50 0.00 0.00 3.56
1711 2074 1.526575 CTCAACCGTGGGCTGCATTT 61.527 55.000 0.50 0.00 0.00 2.32
1712 2075 1.373246 CAACCGTGGGCTGCATTTG 60.373 57.895 0.50 0.00 0.00 2.32
1713 2076 2.573083 AACCGTGGGCTGCATTTGG 61.573 57.895 0.50 0.00 0.00 3.28
1714 2077 2.990967 CCGTGGGCTGCATTTGGT 60.991 61.111 0.50 0.00 0.00 3.67
1715 2078 2.573083 CCGTGGGCTGCATTTGGTT 61.573 57.895 0.50 0.00 0.00 3.67
1716 2079 1.080569 CGTGGGCTGCATTTGGTTC 60.081 57.895 0.50 0.00 0.00 3.62
1717 2080 1.804396 CGTGGGCTGCATTTGGTTCA 61.804 55.000 0.50 0.00 0.00 3.18
1718 2081 0.037975 GTGGGCTGCATTTGGTTCAG 60.038 55.000 0.50 0.00 0.00 3.02
1721 2084 3.900446 GCTGCATTTGGTTCAGCTT 57.100 47.368 6.24 0.00 46.93 3.74
1722 2085 2.159327 GCTGCATTTGGTTCAGCTTT 57.841 45.000 6.24 0.00 46.93 3.51
1723 2086 2.486918 GCTGCATTTGGTTCAGCTTTT 58.513 42.857 6.24 0.00 46.93 2.27
1724 2087 2.874086 GCTGCATTTGGTTCAGCTTTTT 59.126 40.909 6.24 0.00 46.93 1.94
1751 2114 9.744468 TTTTATCAACTTCTACTTTGAAAAGCC 57.256 29.630 2.69 0.00 39.63 4.35
1752 2115 6.959639 ATCAACTTCTACTTTGAAAAGCCA 57.040 33.333 2.69 0.00 39.63 4.75
1753 2116 6.767524 TCAACTTCTACTTTGAAAAGCCAA 57.232 33.333 2.69 0.00 39.63 4.52
1754 2117 7.164230 TCAACTTCTACTTTGAAAAGCCAAA 57.836 32.000 2.69 0.00 39.63 3.28
1755 2118 7.607250 TCAACTTCTACTTTGAAAAGCCAAAA 58.393 30.769 2.69 0.00 39.63 2.44
1756 2119 7.759433 TCAACTTCTACTTTGAAAAGCCAAAAG 59.241 33.333 2.69 4.99 39.63 2.27
1757 2120 6.042777 ACTTCTACTTTGAAAAGCCAAAAGC 58.957 36.000 2.69 0.00 39.63 3.51
1768 2131 2.455674 GCCAAAAGCTAACCAAAGGG 57.544 50.000 0.00 0.00 38.99 3.95
1769 2132 1.001974 GCCAAAAGCTAACCAAAGGGG 59.998 52.381 0.00 0.00 40.08 4.79
1770 2133 3.611305 GCCAAAAGCTAACCAAAGGGGT 61.611 50.000 0.00 0.00 46.49 4.95
1771 2134 4.320395 GCCAAAAGCTAACCAAAGGGGTA 61.320 47.826 0.00 0.00 44.59 3.69
1772 2135 5.779061 GCCAAAAGCTAACCAAAGGGGTAA 61.779 45.833 0.00 0.00 44.59 2.85
1773 2136 7.201091 GCCAAAAGCTAACCAAAGGGGTAAA 62.201 44.000 0.00 0.00 44.59 2.01
1774 2137 8.429542 GCCAAAAGCTAACCAAAGGGGTAAAT 62.430 42.308 0.00 0.00 44.59 1.40
1783 2146 4.314961 CCAAAGGGGTAAATGTTCAAAGC 58.685 43.478 0.00 0.00 0.00 3.51
1784 2147 4.202305 CCAAAGGGGTAAATGTTCAAAGCA 60.202 41.667 0.00 0.00 0.00 3.91
1785 2148 4.871933 AAGGGGTAAATGTTCAAAGCAG 57.128 40.909 0.00 0.00 0.00 4.24
1786 2149 3.844640 AGGGGTAAATGTTCAAAGCAGT 58.155 40.909 0.00 0.00 0.00 4.40
1787 2150 4.223144 AGGGGTAAATGTTCAAAGCAGTT 58.777 39.130 0.00 0.00 0.00 3.16
1788 2151 4.653801 AGGGGTAAATGTTCAAAGCAGTTT 59.346 37.500 0.00 0.00 0.00 2.66
1789 2152 5.130311 AGGGGTAAATGTTCAAAGCAGTTTT 59.870 36.000 0.00 0.00 0.00 2.43
1790 2153 5.820423 GGGGTAAATGTTCAAAGCAGTTTTT 59.180 36.000 0.00 0.00 0.00 1.94
1791 2154 6.238347 GGGGTAAATGTTCAAAGCAGTTTTTG 60.238 38.462 0.00 0.00 38.97 2.44
1792 2155 6.536941 GGGTAAATGTTCAAAGCAGTTTTTGA 59.463 34.615 0.00 0.00 43.32 2.69
1793 2156 7.254421 GGGTAAATGTTCAAAGCAGTTTTTGAG 60.254 37.037 2.02 0.00 45.00 3.02
1794 2157 7.491048 GGTAAATGTTCAAAGCAGTTTTTGAGA 59.509 33.333 2.02 0.00 45.00 3.27
1795 2158 7.903995 AAATGTTCAAAGCAGTTTTTGAGAA 57.096 28.000 2.02 0.00 45.00 2.87
1796 2159 8.496707 AAATGTTCAAAGCAGTTTTTGAGAAT 57.503 26.923 2.02 0.00 45.00 2.40
1797 2160 7.704789 ATGTTCAAAGCAGTTTTTGAGAATC 57.295 32.000 2.02 0.00 45.00 2.52
1798 2161 6.866480 TGTTCAAAGCAGTTTTTGAGAATCT 58.134 32.000 2.02 0.00 45.00 2.40
1799 2162 6.753279 TGTTCAAAGCAGTTTTTGAGAATCTG 59.247 34.615 0.00 0.00 45.00 2.90
1800 2163 6.455360 TCAAAGCAGTTTTTGAGAATCTGT 57.545 33.333 0.00 0.00 40.95 3.41
1801 2164 7.566760 TCAAAGCAGTTTTTGAGAATCTGTA 57.433 32.000 0.00 0.00 40.95 2.74
1802 2165 7.642669 TCAAAGCAGTTTTTGAGAATCTGTAG 58.357 34.615 0.00 0.00 40.95 2.74
1803 2166 5.619625 AGCAGTTTTTGAGAATCTGTAGC 57.380 39.130 0.00 0.00 34.92 3.58
1804 2167 5.312079 AGCAGTTTTTGAGAATCTGTAGCT 58.688 37.500 0.00 0.00 34.92 3.32
1805 2168 5.767168 AGCAGTTTTTGAGAATCTGTAGCTT 59.233 36.000 0.00 0.00 34.92 3.74
1806 2169 6.072783 AGCAGTTTTTGAGAATCTGTAGCTTC 60.073 38.462 0.00 0.00 34.92 3.86
1807 2170 6.072783 GCAGTTTTTGAGAATCTGTAGCTTCT 60.073 38.462 0.00 0.00 33.68 2.85
1808 2171 7.517321 CAGTTTTTGAGAATCTGTAGCTTCTC 58.483 38.462 15.15 15.15 43.69 2.87
1809 2172 6.652900 AGTTTTTGAGAATCTGTAGCTTCTCC 59.347 38.462 17.86 6.74 43.12 3.71
1810 2173 4.744795 TTGAGAATCTGTAGCTTCTCCC 57.255 45.455 17.86 1.79 43.12 4.30
1811 2174 3.987745 TGAGAATCTGTAGCTTCTCCCT 58.012 45.455 17.86 0.00 43.12 4.20
1812 2175 5.130705 TGAGAATCTGTAGCTTCTCCCTA 57.869 43.478 17.86 2.81 43.12 3.53
1813 2176 5.136828 TGAGAATCTGTAGCTTCTCCCTAG 58.863 45.833 17.86 0.00 43.12 3.02
1814 2177 5.137412 AGAATCTGTAGCTTCTCCCTAGT 57.863 43.478 0.00 0.00 0.00 2.57
1815 2178 4.892934 AGAATCTGTAGCTTCTCCCTAGTG 59.107 45.833 0.00 0.00 0.00 2.74
1816 2179 2.379972 TCTGTAGCTTCTCCCTAGTGC 58.620 52.381 0.00 0.00 0.00 4.40
1817 2180 2.103373 CTGTAGCTTCTCCCTAGTGCA 58.897 52.381 0.00 0.00 0.00 4.57
1818 2181 2.497675 CTGTAGCTTCTCCCTAGTGCAA 59.502 50.000 0.00 0.00 0.00 4.08
1819 2182 2.903784 TGTAGCTTCTCCCTAGTGCAAA 59.096 45.455 0.00 0.00 0.00 3.68
1820 2183 3.519510 TGTAGCTTCTCCCTAGTGCAAAT 59.480 43.478 0.00 0.00 0.00 2.32
1821 2184 3.728385 AGCTTCTCCCTAGTGCAAATT 57.272 42.857 0.00 0.00 0.00 1.82
1822 2185 4.039603 AGCTTCTCCCTAGTGCAAATTT 57.960 40.909 0.00 0.00 0.00 1.82
1823 2186 4.013050 AGCTTCTCCCTAGTGCAAATTTC 58.987 43.478 0.00 0.00 0.00 2.17
1824 2187 3.758554 GCTTCTCCCTAGTGCAAATTTCA 59.241 43.478 0.00 0.00 0.00 2.69
1825 2188 4.218417 GCTTCTCCCTAGTGCAAATTTCAA 59.782 41.667 0.00 0.00 0.00 2.69
1826 2189 5.278957 GCTTCTCCCTAGTGCAAATTTCAAA 60.279 40.000 0.00 0.00 0.00 2.69
1827 2190 5.964958 TCTCCCTAGTGCAAATTTCAAAG 57.035 39.130 0.00 0.00 0.00 2.77
1828 2191 5.385198 TCTCCCTAGTGCAAATTTCAAAGT 58.615 37.500 0.00 0.00 0.00 2.66
1829 2192 5.833131 TCTCCCTAGTGCAAATTTCAAAGTT 59.167 36.000 0.00 0.00 0.00 2.66
1830 2193 5.841810 TCCCTAGTGCAAATTTCAAAGTTG 58.158 37.500 5.94 5.94 39.31 3.16
1831 2194 4.990426 CCCTAGTGCAAATTTCAAAGTTGG 59.010 41.667 12.02 0.00 36.99 3.77
1832 2195 4.990426 CCTAGTGCAAATTTCAAAGTTGGG 59.010 41.667 12.02 0.91 36.99 4.12
1833 2196 4.486125 AGTGCAAATTTCAAAGTTGGGT 57.514 36.364 12.02 0.00 36.99 4.51
1834 2197 5.606348 AGTGCAAATTTCAAAGTTGGGTA 57.394 34.783 12.02 0.00 36.99 3.69
1835 2198 6.173427 AGTGCAAATTTCAAAGTTGGGTAT 57.827 33.333 12.02 0.00 36.99 2.73
1836 2199 6.223120 AGTGCAAATTTCAAAGTTGGGTATC 58.777 36.000 12.02 0.00 36.99 2.24
1837 2200 5.408299 GTGCAAATTTCAAAGTTGGGTATCC 59.592 40.000 12.02 0.00 36.99 2.59
1838 2201 5.306678 TGCAAATTTCAAAGTTGGGTATCCT 59.693 36.000 12.02 0.00 36.99 3.24
1839 2202 6.495181 TGCAAATTTCAAAGTTGGGTATCCTA 59.505 34.615 12.02 0.00 36.99 2.94
1840 2203 7.015682 TGCAAATTTCAAAGTTGGGTATCCTAA 59.984 33.333 12.02 0.00 36.99 2.69
1841 2204 7.330946 GCAAATTTCAAAGTTGGGTATCCTAAC 59.669 37.037 12.02 6.87 36.99 2.34
1842 2205 8.585018 CAAATTTCAAAGTTGGGTATCCTAACT 58.415 33.333 10.88 10.88 36.59 2.24
1843 2206 8.721133 AATTTCAAAGTTGGGTATCCTAACTT 57.279 30.769 19.45 19.45 41.56 2.66
1844 2207 8.721133 ATTTCAAAGTTGGGTATCCTAACTTT 57.279 30.769 25.92 25.92 44.87 2.66
1845 2208 8.541899 TTTCAAAGTTGGGTATCCTAACTTTT 57.458 30.769 27.73 16.86 43.46 2.27
1846 2209 7.754851 TCAAAGTTGGGTATCCTAACTTTTC 57.245 36.000 27.73 2.13 43.46 2.29
1847 2210 7.291566 TCAAAGTTGGGTATCCTAACTTTTCA 58.708 34.615 27.73 19.30 43.46 2.69
1848 2211 7.447238 TCAAAGTTGGGTATCCTAACTTTTCAG 59.553 37.037 27.73 20.61 43.46 3.02
1849 2212 5.254115 AGTTGGGTATCCTAACTTTTCAGC 58.746 41.667 10.88 0.00 33.63 4.26
1850 2213 5.014228 AGTTGGGTATCCTAACTTTTCAGCT 59.986 40.000 10.88 0.00 33.63 4.24
1851 2214 5.514500 TGGGTATCCTAACTTTTCAGCTT 57.486 39.130 0.00 0.00 0.00 3.74
1852 2215 5.887754 TGGGTATCCTAACTTTTCAGCTTT 58.112 37.500 0.00 0.00 0.00 3.51
1853 2216 5.944007 TGGGTATCCTAACTTTTCAGCTTTC 59.056 40.000 0.00 0.00 0.00 2.62
1854 2217 5.944007 GGGTATCCTAACTTTTCAGCTTTCA 59.056 40.000 0.00 0.00 0.00 2.69
1855 2218 6.094186 GGGTATCCTAACTTTTCAGCTTTCAG 59.906 42.308 0.00 0.00 0.00 3.02
1856 2219 5.635417 ATCCTAACTTTTCAGCTTTCAGC 57.365 39.130 0.00 0.00 42.84 4.26
1857 2220 3.821033 TCCTAACTTTTCAGCTTTCAGCC 59.179 43.478 0.00 0.00 43.77 4.85
1858 2221 3.823304 CCTAACTTTTCAGCTTTCAGCCT 59.177 43.478 0.00 0.00 43.77 4.58
1859 2222 4.279420 CCTAACTTTTCAGCTTTCAGCCTT 59.721 41.667 0.00 0.00 43.77 4.35
1860 2223 4.743057 AACTTTTCAGCTTTCAGCCTTT 57.257 36.364 0.00 0.00 43.77 3.11
1861 2224 4.313277 ACTTTTCAGCTTTCAGCCTTTC 57.687 40.909 0.00 0.00 43.77 2.62
1862 2225 3.068732 ACTTTTCAGCTTTCAGCCTTTCC 59.931 43.478 0.00 0.00 43.77 3.13
1863 2226 2.363306 TTCAGCTTTCAGCCTTTCCA 57.637 45.000 0.00 0.00 43.77 3.53
1864 2227 1.609208 TCAGCTTTCAGCCTTTCCAC 58.391 50.000 0.00 0.00 43.77 4.02
1865 2228 1.133823 TCAGCTTTCAGCCTTTCCACA 60.134 47.619 0.00 0.00 43.77 4.17
1866 2229 1.682854 CAGCTTTCAGCCTTTCCACAA 59.317 47.619 0.00 0.00 43.77 3.33
1867 2230 1.683385 AGCTTTCAGCCTTTCCACAAC 59.317 47.619 0.00 0.00 43.77 3.32
1868 2231 1.408702 GCTTTCAGCCTTTCCACAACA 59.591 47.619 0.00 0.00 34.48 3.33
1869 2232 2.544486 GCTTTCAGCCTTTCCACAACAG 60.544 50.000 0.00 0.00 34.48 3.16
1870 2233 1.032014 TTCAGCCTTTCCACAACAGC 58.968 50.000 0.00 0.00 0.00 4.40
1871 2234 0.183492 TCAGCCTTTCCACAACAGCT 59.817 50.000 0.00 0.00 0.00 4.24
1872 2235 1.035139 CAGCCTTTCCACAACAGCTT 58.965 50.000 0.00 0.00 0.00 3.74
1873 2236 1.410153 CAGCCTTTCCACAACAGCTTT 59.590 47.619 0.00 0.00 0.00 3.51
1874 2237 2.110578 AGCCTTTCCACAACAGCTTTT 58.889 42.857 0.00 0.00 0.00 2.27
1875 2238 2.501316 AGCCTTTCCACAACAGCTTTTT 59.499 40.909 0.00 0.00 0.00 1.94
1876 2239 2.866156 GCCTTTCCACAACAGCTTTTTC 59.134 45.455 0.00 0.00 0.00 2.29
1877 2240 3.678529 GCCTTTCCACAACAGCTTTTTCA 60.679 43.478 0.00 0.00 0.00 2.69
1878 2241 4.114794 CCTTTCCACAACAGCTTTTTCAG 58.885 43.478 0.00 0.00 0.00 3.02
1879 2242 4.142182 CCTTTCCACAACAGCTTTTTCAGA 60.142 41.667 0.00 0.00 0.00 3.27
1880 2243 5.398603 TTTCCACAACAGCTTTTTCAGAA 57.601 34.783 0.00 0.00 0.00 3.02
1881 2244 5.596836 TTCCACAACAGCTTTTTCAGAAT 57.403 34.783 0.00 0.00 0.00 2.40
1882 2245 5.186996 TCCACAACAGCTTTTTCAGAATC 57.813 39.130 0.00 0.00 0.00 2.52
1883 2246 4.889409 TCCACAACAGCTTTTTCAGAATCT 59.111 37.500 0.00 0.00 0.00 2.40
1884 2247 4.980434 CCACAACAGCTTTTTCAGAATCTG 59.020 41.667 3.38 3.38 0.00 2.90
1885 2248 4.443394 CACAACAGCTTTTTCAGAATCTGC 59.557 41.667 5.18 0.00 0.00 4.26
1886 2249 4.098349 ACAACAGCTTTTTCAGAATCTGCA 59.902 37.500 5.18 0.00 0.00 4.41
1887 2250 4.500603 ACAGCTTTTTCAGAATCTGCAG 57.499 40.909 7.63 7.63 0.00 4.41
1888 2251 3.243336 CAGCTTTTTCAGAATCTGCAGC 58.757 45.455 9.47 9.86 0.00 5.25
1889 2252 3.057456 CAGCTTTTTCAGAATCTGCAGCT 60.057 43.478 9.47 15.55 33.75 4.24
1890 2253 3.190953 AGCTTTTTCAGAATCTGCAGCTC 59.809 43.478 9.47 8.21 30.43 4.09
1891 2254 3.057736 GCTTTTTCAGAATCTGCAGCTCA 60.058 43.478 9.47 0.00 0.00 4.26
1892 2255 4.558095 GCTTTTTCAGAATCTGCAGCTCAA 60.558 41.667 9.47 0.00 0.00 3.02
1893 2256 4.494350 TTTTCAGAATCTGCAGCTCAAC 57.506 40.909 9.47 0.00 0.00 3.18
1894 2257 2.105006 TCAGAATCTGCAGCTCAACC 57.895 50.000 9.47 0.00 0.00 3.77
1895 2258 1.348696 TCAGAATCTGCAGCTCAACCA 59.651 47.619 9.47 0.00 0.00 3.67
1896 2259 2.156917 CAGAATCTGCAGCTCAACCAA 58.843 47.619 9.47 0.00 0.00 3.67
1897 2260 2.555325 CAGAATCTGCAGCTCAACCAAA 59.445 45.455 9.47 0.00 0.00 3.28
1898 2261 2.555757 AGAATCTGCAGCTCAACCAAAC 59.444 45.455 9.47 0.00 0.00 2.93
1899 2262 1.985473 ATCTGCAGCTCAACCAAACA 58.015 45.000 9.47 0.00 0.00 2.83
1900 2263 1.761449 TCTGCAGCTCAACCAAACAA 58.239 45.000 9.47 0.00 0.00 2.83
1901 2264 2.098614 TCTGCAGCTCAACCAAACAAA 58.901 42.857 9.47 0.00 0.00 2.83
1902 2265 2.099592 TCTGCAGCTCAACCAAACAAAG 59.900 45.455 9.47 0.00 0.00 2.77
1903 2266 1.211743 GCAGCTCAACCAAACAAAGC 58.788 50.000 0.00 0.00 0.00 3.51
1904 2267 1.856802 CAGCTCAACCAAACAAAGCC 58.143 50.000 0.00 0.00 33.43 4.35
1905 2268 1.410153 CAGCTCAACCAAACAAAGCCT 59.590 47.619 0.00 0.00 33.43 4.58
1906 2269 2.622942 CAGCTCAACCAAACAAAGCCTA 59.377 45.455 0.00 0.00 33.43 3.93
1907 2270 2.887152 AGCTCAACCAAACAAAGCCTAG 59.113 45.455 0.00 0.00 33.43 3.02
1908 2271 2.623416 GCTCAACCAAACAAAGCCTAGT 59.377 45.455 0.00 0.00 0.00 2.57
1909 2272 3.550842 GCTCAACCAAACAAAGCCTAGTG 60.551 47.826 0.00 0.00 0.00 2.74
1910 2273 2.360801 TCAACCAAACAAAGCCTAGTGC 59.639 45.455 0.00 0.00 41.71 4.40
1925 2288 4.653893 TGCTGCACACACTTTGGA 57.346 50.000 0.00 0.00 0.00 3.53
1926 2289 2.407268 TGCTGCACACACTTTGGAG 58.593 52.632 0.00 0.00 35.62 3.86
1927 2290 0.107263 TGCTGCACACACTTTGGAGA 60.107 50.000 0.00 0.00 34.49 3.71
1928 2291 1.024271 GCTGCACACACTTTGGAGAA 58.976 50.000 0.00 0.00 34.49 2.87
1929 2292 1.610522 GCTGCACACACTTTGGAGAAT 59.389 47.619 0.00 0.00 34.49 2.40
1930 2293 2.351157 GCTGCACACACTTTGGAGAATC 60.351 50.000 0.00 0.00 34.49 2.52
1931 2294 3.144506 CTGCACACACTTTGGAGAATCT 58.855 45.455 0.00 0.00 34.49 2.40
1932 2295 3.141398 TGCACACACTTTGGAGAATCTC 58.859 45.455 0.71 0.71 33.73 2.75
1933 2296 3.141398 GCACACACTTTGGAGAATCTCA 58.859 45.455 12.79 0.00 33.73 3.27
1934 2297 3.565482 GCACACACTTTGGAGAATCTCAA 59.435 43.478 12.79 0.00 33.73 3.02
1935 2298 4.555511 GCACACACTTTGGAGAATCTCAAC 60.556 45.833 12.79 0.00 33.73 3.18
1936 2299 4.818546 CACACACTTTGGAGAATCTCAACT 59.181 41.667 12.79 0.00 33.73 3.16
1941 2304 4.141390 ACTTTGGAGAATCTCAACTGTGGT 60.141 41.667 12.79 0.00 33.73 4.16
1948 2311 4.757149 AGAATCTCAACTGTGGTTAAGTGC 59.243 41.667 0.00 0.00 33.88 4.40
1951 2314 1.946768 TCAACTGTGGTTAAGTGCTGC 59.053 47.619 0.00 0.00 33.88 5.25
1952 2315 1.675483 CAACTGTGGTTAAGTGCTGCA 59.325 47.619 0.00 0.00 33.88 4.41
1978 2361 0.318120 TGACTGCAGATGCTTCACGA 59.682 50.000 23.35 0.00 42.66 4.35
1980 2363 0.319728 ACTGCAGATGCTTCACGACT 59.680 50.000 23.35 0.00 42.66 4.18
1987 2370 0.250467 ATGCTTCACGACTGTGCCTT 60.250 50.000 0.00 0.00 46.01 4.35
1988 2371 0.463654 TGCTTCACGACTGTGCCTTT 60.464 50.000 0.00 0.00 46.01 3.11
1989 2372 0.663153 GCTTCACGACTGTGCCTTTT 59.337 50.000 0.00 0.00 46.01 2.27
1990 2373 1.334149 GCTTCACGACTGTGCCTTTTC 60.334 52.381 0.00 0.00 46.01 2.29
1991 2374 1.939934 CTTCACGACTGTGCCTTTTCA 59.060 47.619 0.00 0.00 46.01 2.69
1992 2375 1.581934 TCACGACTGTGCCTTTTCAG 58.418 50.000 0.00 0.00 46.01 3.02
1993 2376 0.588252 CACGACTGTGCCTTTTCAGG 59.412 55.000 0.00 0.00 44.28 3.86
1994 2377 0.180406 ACGACTGTGCCTTTTCAGGT 59.820 50.000 0.00 0.00 43.18 4.00
1995 2378 0.868406 CGACTGTGCCTTTTCAGGTC 59.132 55.000 0.00 0.00 43.18 3.85
1996 2379 1.810031 CGACTGTGCCTTTTCAGGTCA 60.810 52.381 0.00 0.00 43.18 4.02
1997 2380 1.876156 GACTGTGCCTTTTCAGGTCAG 59.124 52.381 11.39 11.39 43.18 3.51
1998 2381 1.242076 CTGTGCCTTTTCAGGTCAGG 58.758 55.000 7.34 0.00 43.18 3.86
1999 2382 0.550914 TGTGCCTTTTCAGGTCAGGT 59.449 50.000 0.00 0.00 43.18 4.00
2000 2383 0.954452 GTGCCTTTTCAGGTCAGGTG 59.046 55.000 0.00 0.00 43.18 4.00
2001 2384 0.843309 TGCCTTTTCAGGTCAGGTGA 59.157 50.000 0.00 0.00 43.18 4.02
2002 2385 1.214175 TGCCTTTTCAGGTCAGGTGAA 59.786 47.619 0.00 0.00 43.18 3.18
2003 2386 1.882623 GCCTTTTCAGGTCAGGTGAAG 59.117 52.381 0.00 0.00 43.18 3.02
2004 2387 1.882623 CCTTTTCAGGTCAGGTGAAGC 59.117 52.381 0.00 0.00 35.39 3.86
2005 2388 2.575532 CTTTTCAGGTCAGGTGAAGCA 58.424 47.619 0.00 0.00 35.39 3.91
2006 2389 2.260844 TTTCAGGTCAGGTGAAGCAG 57.739 50.000 0.00 0.00 35.39 4.24
2007 2390 0.250467 TTCAGGTCAGGTGAAGCAGC 60.250 55.000 0.00 0.00 30.36 5.25
2008 2391 1.123861 TCAGGTCAGGTGAAGCAGCT 61.124 55.000 0.00 0.00 43.33 4.24
2009 2392 0.250640 CAGGTCAGGTGAAGCAGCTT 60.251 55.000 7.60 7.60 40.40 3.74
2010 2393 0.250640 AGGTCAGGTGAAGCAGCTTG 60.251 55.000 13.91 0.00 40.40 4.01
2011 2394 1.239968 GGTCAGGTGAAGCAGCTTGG 61.240 60.000 13.91 0.00 40.40 3.61
2012 2395 0.250467 GTCAGGTGAAGCAGCTTGGA 60.250 55.000 13.91 0.00 40.40 3.53
2013 2396 0.694771 TCAGGTGAAGCAGCTTGGAT 59.305 50.000 13.91 0.00 40.40 3.41
2014 2397 0.809385 CAGGTGAAGCAGCTTGGATG 59.191 55.000 13.91 2.13 40.40 3.51
2015 2398 0.403271 AGGTGAAGCAGCTTGGATGT 59.597 50.000 13.91 0.00 39.27 3.06
2016 2399 1.630369 AGGTGAAGCAGCTTGGATGTA 59.370 47.619 13.91 0.00 39.27 2.29
2017 2400 2.040278 AGGTGAAGCAGCTTGGATGTAA 59.960 45.455 13.91 0.00 39.27 2.41
2018 2401 2.162408 GGTGAAGCAGCTTGGATGTAAC 59.838 50.000 13.91 0.00 0.00 2.50
2019 2402 2.076100 TGAAGCAGCTTGGATGTAACG 58.924 47.619 13.91 0.00 0.00 3.18
2020 2403 2.076863 GAAGCAGCTTGGATGTAACGT 58.923 47.619 13.91 0.00 0.00 3.99
2021 2404 1.726853 AGCAGCTTGGATGTAACGTC 58.273 50.000 0.00 0.00 0.00 4.34
2022 2405 0.370273 GCAGCTTGGATGTAACGTCG 59.630 55.000 0.00 0.00 0.00 5.12
2023 2406 0.370273 CAGCTTGGATGTAACGTCGC 59.630 55.000 0.00 0.00 0.00 5.19
2024 2407 0.739813 AGCTTGGATGTAACGTCGCC 60.740 55.000 0.00 0.00 0.00 5.54
2025 2408 0.739813 GCTTGGATGTAACGTCGCCT 60.740 55.000 0.00 0.00 0.00 5.52
2026 2409 1.278238 CTTGGATGTAACGTCGCCTC 58.722 55.000 0.00 0.00 0.00 4.70
2027 2410 0.108520 TTGGATGTAACGTCGCCTCC 60.109 55.000 0.00 0.00 0.00 4.30
2028 2411 1.588139 GGATGTAACGTCGCCTCCG 60.588 63.158 0.00 0.00 0.00 4.63
2029 2412 1.430632 GATGTAACGTCGCCTCCGA 59.569 57.895 0.00 0.00 42.01 4.55
2030 2413 0.179156 GATGTAACGTCGCCTCCGAA 60.179 55.000 0.00 0.00 46.34 4.30
2031 2414 0.179145 ATGTAACGTCGCCTCCGAAG 60.179 55.000 0.00 0.00 46.34 3.79
2032 2415 1.236616 TGTAACGTCGCCTCCGAAGA 61.237 55.000 6.07 0.00 46.34 2.87
2033 2416 0.796113 GTAACGTCGCCTCCGAAGAC 60.796 60.000 6.07 0.00 46.34 3.01
2036 2419 2.202453 GTCGCCTCCGAAGACGAC 60.202 66.667 0.00 0.00 46.34 4.34
2037 2420 2.359602 TCGCCTCCGAAGACGACT 60.360 61.111 0.00 0.00 41.17 4.18
2038 2421 1.970114 TCGCCTCCGAAGACGACTT 60.970 57.895 0.00 0.00 41.17 3.01
2039 2422 1.801913 CGCCTCCGAAGACGACTTG 60.802 63.158 4.51 0.00 42.66 3.16
2040 2423 1.446272 GCCTCCGAAGACGACTTGG 60.446 63.158 4.51 3.60 42.66 3.61
2041 2424 1.446272 CCTCCGAAGACGACTTGGC 60.446 63.158 4.51 0.00 42.66 4.52
2042 2425 1.587054 CTCCGAAGACGACTTGGCT 59.413 57.895 4.51 0.00 42.66 4.75
2043 2426 0.809385 CTCCGAAGACGACTTGGCTA 59.191 55.000 4.51 0.00 42.66 3.93
2044 2427 0.809385 TCCGAAGACGACTTGGCTAG 59.191 55.000 4.51 0.00 42.66 3.42
2045 2428 0.526662 CCGAAGACGACTTGGCTAGT 59.473 55.000 4.51 0.00 42.66 2.57
2046 2429 1.618861 CGAAGACGACTTGGCTAGTG 58.381 55.000 6.27 1.95 42.66 2.74
2047 2430 1.068472 CGAAGACGACTTGGCTAGTGT 60.068 52.381 6.27 5.20 42.66 3.55
2048 2431 2.597520 GAAGACGACTTGGCTAGTGTC 58.402 52.381 6.27 13.39 37.17 3.67
2050 2433 3.768632 CGACTTGGCTAGTGTCGC 58.231 61.111 6.27 0.00 45.00 5.19
2051 2434 2.152699 CGACTTGGCTAGTGTCGCG 61.153 63.158 6.27 0.00 45.00 5.87
2052 2435 2.432628 ACTTGGCTAGTGTCGCGC 60.433 61.111 0.00 0.00 35.19 6.86
2064 2447 2.028925 TCGCGCACACATGACTGT 59.971 55.556 8.75 0.00 35.44 3.55
2077 2460 3.056536 ACATGACTGTAGATGCTTCACGT 60.057 43.478 0.00 0.00 32.49 4.49
2079 2462 2.820197 TGACTGTAGATGCTTCACGTCT 59.180 45.455 2.07 0.00 46.65 4.18
2081 2464 1.923204 CTGTAGATGCTTCACGTCTGC 59.077 52.381 2.07 0.00 44.63 4.26
2082 2465 1.546029 TGTAGATGCTTCACGTCTGCT 59.454 47.619 2.07 0.00 44.75 4.24
2083 2466 2.029020 TGTAGATGCTTCACGTCTGCTT 60.029 45.455 2.07 0.06 44.75 3.91
2084 2467 1.719600 AGATGCTTCACGTCTGCTTC 58.280 50.000 2.07 10.05 43.29 3.86
2085 2468 1.001293 AGATGCTTCACGTCTGCTTCA 59.999 47.619 16.43 0.31 43.29 3.02
2086 2469 1.127582 GATGCTTCACGTCTGCTTCAC 59.872 52.381 12.02 0.00 33.11 3.18
2087 2470 1.215014 TGCTTCACGTCTGCTTCACG 61.215 55.000 5.71 1.78 43.13 4.35
2089 2472 1.891060 CTTCACGTCTGCTTCACGCC 61.891 60.000 0.00 0.00 41.10 5.68
2090 2473 2.356313 CACGTCTGCTTCACGCCT 60.356 61.111 0.00 0.00 41.10 5.52
2091 2474 2.356313 ACGTCTGCTTCACGCCTG 60.356 61.111 3.06 0.00 41.10 4.85
2092 2475 2.356313 CGTCTGCTTCACGCCTGT 60.356 61.111 0.00 0.00 38.05 4.00
2094 2477 2.666190 TCTGCTTCACGCCTGTGC 60.666 61.111 0.00 0.00 46.01 4.57
2095 2478 3.730761 CTGCTTCACGCCTGTGCC 61.731 66.667 0.00 0.00 46.01 5.01
2096 2479 4.254709 TGCTTCACGCCTGTGCCT 62.255 61.111 0.00 0.00 46.01 4.75
2097 2480 2.980233 GCTTCACGCCTGTGCCTT 60.980 61.111 0.00 0.00 46.01 4.35
2098 2481 2.555547 GCTTCACGCCTGTGCCTTT 61.556 57.895 0.00 0.00 46.01 3.11
2099 2482 1.576421 CTTCACGCCTGTGCCTTTC 59.424 57.895 0.00 0.00 46.01 2.62
2100 2483 1.856265 CTTCACGCCTGTGCCTTTCC 61.856 60.000 0.00 0.00 46.01 3.13
2101 2484 2.594303 CACGCCTGTGCCTTTCCA 60.594 61.111 0.00 0.00 39.67 3.53
2102 2485 2.281761 ACGCCTGTGCCTTTCCAG 60.282 61.111 0.00 0.00 0.00 3.86
2104 2487 2.677875 GCCTGTGCCTTTCCAGGG 60.678 66.667 7.72 0.00 46.83 4.45
2105 2488 2.036256 CCTGTGCCTTTCCAGGGG 59.964 66.667 0.00 0.00 43.74 4.79
2106 2489 2.538141 CCTGTGCCTTTCCAGGGGA 61.538 63.158 0.00 0.00 43.74 4.81
2107 2490 1.460255 CTGTGCCTTTCCAGGGGAA 59.540 57.895 0.00 0.00 41.21 3.97
2108 2491 0.610232 CTGTGCCTTTCCAGGGGAAG 60.610 60.000 0.00 0.00 43.06 3.46
2109 2492 1.979155 GTGCCTTTCCAGGGGAAGC 60.979 63.158 0.42 0.93 43.06 3.86
2110 2493 2.440599 GCCTTTCCAGGGGAAGCA 59.559 61.111 0.42 0.00 43.06 3.91
2111 2494 1.680314 GCCTTTCCAGGGGAAGCAG 60.680 63.158 0.42 0.00 43.06 4.24
2112 2495 1.680314 CCTTTCCAGGGGAAGCAGC 60.680 63.158 0.42 0.00 43.06 5.25
2113 2496 1.381851 CTTTCCAGGGGAAGCAGCT 59.618 57.895 0.00 0.00 43.06 4.24
2114 2497 0.251519 CTTTCCAGGGGAAGCAGCTT 60.252 55.000 7.60 7.60 43.06 3.74
2115 2498 0.540365 TTTCCAGGGGAAGCAGCTTG 60.540 55.000 13.91 0.00 43.06 4.01
2116 2499 2.362120 CCAGGGGAAGCAGCTTGG 60.362 66.667 13.91 3.67 0.00 3.61
2117 2500 3.066814 CAGGGGAAGCAGCTTGGC 61.067 66.667 13.91 0.00 0.00 4.52
2129 2512 0.890683 AGCTTGGCTGTAATGTTGCC 59.109 50.000 0.00 0.00 46.26 4.52
2130 2513 0.890683 GCTTGGCTGTAATGTTGCCT 59.109 50.000 0.00 0.00 46.23 4.75
2131 2514 1.135286 GCTTGGCTGTAATGTTGCCTC 60.135 52.381 0.00 0.00 46.23 4.70
2132 2515 1.474077 CTTGGCTGTAATGTTGCCTCC 59.526 52.381 0.00 0.00 46.23 4.30
2133 2516 0.676466 TGGCTGTAATGTTGCCTCCG 60.676 55.000 0.00 0.00 46.23 4.63
2134 2517 0.392461 GGCTGTAATGTTGCCTCCGA 60.392 55.000 0.00 0.00 43.05 4.55
2135 2518 1.448985 GCTGTAATGTTGCCTCCGAA 58.551 50.000 0.00 0.00 0.00 4.30
2136 2519 1.398390 GCTGTAATGTTGCCTCCGAAG 59.602 52.381 0.00 0.00 0.00 3.79
2137 2520 2.935238 GCTGTAATGTTGCCTCCGAAGA 60.935 50.000 0.00 0.00 0.00 2.87
2138 2521 2.673368 CTGTAATGTTGCCTCCGAAGAC 59.327 50.000 0.00 0.00 0.00 3.01
2139 2522 1.659098 GTAATGTTGCCTCCGAAGACG 59.341 52.381 0.00 0.00 39.43 4.18
2140 2523 0.320374 AATGTTGCCTCCGAAGACGA 59.680 50.000 0.00 0.00 42.66 4.20
2141 2524 0.389948 ATGTTGCCTCCGAAGACGAC 60.390 55.000 0.00 0.00 42.66 4.34
2142 2525 1.006571 GTTGCCTCCGAAGACGACA 60.007 57.895 0.00 0.00 42.66 4.35
2143 2526 0.389948 GTTGCCTCCGAAGACGACAT 60.390 55.000 0.00 0.00 42.66 3.06
2144 2527 0.389817 TTGCCTCCGAAGACGACATG 60.390 55.000 0.00 0.00 42.66 3.21
2145 2528 2.167861 GCCTCCGAAGACGACATGC 61.168 63.158 0.00 0.00 42.66 4.06
2146 2529 1.519455 CCTCCGAAGACGACATGCC 60.519 63.158 0.00 0.00 42.66 4.40
2147 2530 1.519455 CTCCGAAGACGACATGCCC 60.519 63.158 0.00 0.00 42.66 5.36
2148 2531 2.885644 CCGAAGACGACATGCCCG 60.886 66.667 6.56 6.56 42.66 6.13
2149 2532 2.126071 CGAAGACGACATGCCCGT 60.126 61.111 12.66 12.66 43.56 5.28
2163 2546 3.691342 CCGTCCCGTGCCTCTGAA 61.691 66.667 0.00 0.00 0.00 3.02
2164 2547 2.125912 CGTCCCGTGCCTCTGAAG 60.126 66.667 0.00 0.00 0.00 3.02
2165 2548 2.636412 CGTCCCGTGCCTCTGAAGA 61.636 63.158 0.00 0.00 0.00 2.87
2166 2549 1.671742 GTCCCGTGCCTCTGAAGAA 59.328 57.895 0.00 0.00 0.00 2.52
2167 2550 0.250513 GTCCCGTGCCTCTGAAGAAT 59.749 55.000 0.00 0.00 0.00 2.40
2168 2551 0.984230 TCCCGTGCCTCTGAAGAATT 59.016 50.000 0.00 0.00 0.00 2.17
2182 2565 3.740590 GAAGAATTCACATCTGTGCACG 58.259 45.455 13.13 7.36 46.62 5.34
2183 2566 2.771089 AGAATTCACATCTGTGCACGT 58.229 42.857 13.13 0.14 45.25 4.49
2184 2567 3.925379 AGAATTCACATCTGTGCACGTA 58.075 40.909 13.13 2.46 45.25 3.57
2185 2568 3.679980 AGAATTCACATCTGTGCACGTAC 59.320 43.478 13.13 0.00 45.25 3.67
2186 2569 2.517650 TTCACATCTGTGCACGTACA 57.482 45.000 13.13 0.00 45.25 2.90
2187 2570 2.741759 TCACATCTGTGCACGTACAT 57.258 45.000 13.13 0.00 45.25 2.29
2188 2571 3.859411 TCACATCTGTGCACGTACATA 57.141 42.857 13.13 0.00 45.25 2.29
2189 2572 3.507786 TCACATCTGTGCACGTACATAC 58.492 45.455 13.13 0.00 45.25 2.39
2190 2573 3.192633 TCACATCTGTGCACGTACATACT 59.807 43.478 13.13 0.00 45.25 2.12
2191 2574 3.926527 CACATCTGTGCACGTACATACTT 59.073 43.478 13.13 0.00 39.39 2.24
2192 2575 4.388773 CACATCTGTGCACGTACATACTTT 59.611 41.667 13.13 0.00 39.39 2.66
2193 2576 5.575218 CACATCTGTGCACGTACATACTTTA 59.425 40.000 13.13 0.00 39.39 1.85
2194 2577 5.575606 ACATCTGTGCACGTACATACTTTAC 59.424 40.000 13.13 0.00 0.00 2.01
2195 2578 5.123805 TCTGTGCACGTACATACTTTACA 57.876 39.130 13.13 0.00 0.00 2.41
2196 2579 5.716094 TCTGTGCACGTACATACTTTACAT 58.284 37.500 13.13 0.00 0.00 2.29
2197 2580 5.575218 TCTGTGCACGTACATACTTTACATG 59.425 40.000 13.13 0.00 0.00 3.21
2198 2581 4.092237 TGTGCACGTACATACTTTACATGC 59.908 41.667 13.13 0.00 0.00 4.06
2199 2582 3.619483 TGCACGTACATACTTTACATGCC 59.381 43.478 0.00 0.00 0.00 4.40
2200 2583 3.869246 GCACGTACATACTTTACATGCCT 59.131 43.478 0.00 0.00 0.00 4.75
2201 2584 4.025979 GCACGTACATACTTTACATGCCTC 60.026 45.833 0.00 0.00 0.00 4.70
2202 2585 5.106442 CACGTACATACTTTACATGCCTCA 58.894 41.667 0.00 0.00 0.00 3.86
2203 2586 5.579119 CACGTACATACTTTACATGCCTCAA 59.421 40.000 0.00 0.00 0.00 3.02
2204 2587 5.579511 ACGTACATACTTTACATGCCTCAAC 59.420 40.000 0.00 0.00 0.00 3.18
2205 2588 5.006358 CGTACATACTTTACATGCCTCAACC 59.994 44.000 0.00 0.00 0.00 3.77
2206 2589 3.938963 ACATACTTTACATGCCTCAACCG 59.061 43.478 0.00 0.00 0.00 4.44
2207 2590 2.561478 ACTTTACATGCCTCAACCGT 57.439 45.000 0.00 0.00 0.00 4.83
2208 2591 2.151202 ACTTTACATGCCTCAACCGTG 58.849 47.619 0.00 0.00 0.00 4.94
2209 2592 1.468520 CTTTACATGCCTCAACCGTGG 59.531 52.381 0.00 0.00 0.00 4.94
2214 2597 2.125106 GCCTCAACCGTGGCTAGG 60.125 66.667 0.00 0.00 46.30 3.02
2215 2598 2.955881 GCCTCAACCGTGGCTAGGT 61.956 63.158 0.00 0.00 46.30 3.08
2216 2599 1.079127 CCTCAACCGTGGCTAGGTG 60.079 63.158 5.30 0.00 41.95 4.00
2217 2600 1.541310 CCTCAACCGTGGCTAGGTGA 61.541 60.000 5.30 0.00 41.95 4.02
2218 2601 0.537188 CTCAACCGTGGCTAGGTGAT 59.463 55.000 5.30 0.00 41.95 3.06
2219 2602 0.249120 TCAACCGTGGCTAGGTGATG 59.751 55.000 5.30 2.11 41.95 3.07
2220 2603 0.036388 CAACCGTGGCTAGGTGATGT 60.036 55.000 5.30 0.00 41.95 3.06
2221 2604 0.036388 AACCGTGGCTAGGTGATGTG 60.036 55.000 5.30 0.00 41.95 3.21
2222 2605 1.815421 CCGTGGCTAGGTGATGTGC 60.815 63.158 0.00 0.00 0.00 4.57
2223 2606 1.079197 CGTGGCTAGGTGATGTGCA 60.079 57.895 0.00 0.00 0.00 4.57
2224 2607 1.361668 CGTGGCTAGGTGATGTGCAC 61.362 60.000 10.75 10.75 46.98 4.57
2237 2620 2.611225 TGTGCACACATGACTGTACA 57.389 45.000 17.42 6.95 36.21 2.90
2238 2621 2.482864 TGTGCACACATGACTGTACAG 58.517 47.619 21.44 21.44 36.21 2.74
2239 2622 1.800586 GTGCACACATGACTGTACAGG 59.199 52.381 26.12 11.17 33.14 4.00
2240 2623 1.416030 TGCACACATGACTGTACAGGT 59.584 47.619 26.12 11.82 35.16 4.00
2241 2624 2.069273 GCACACATGACTGTACAGGTC 58.931 52.381 26.12 19.60 32.49 3.85
2242 2625 2.547855 GCACACATGACTGTACAGGTCA 60.548 50.000 26.12 23.76 45.84 4.02
2243 2626 3.727726 CACACATGACTGTACAGGTCAA 58.272 45.455 26.12 9.36 45.09 3.18
2244 2627 4.126437 CACACATGACTGTACAGGTCAAA 58.874 43.478 26.12 7.63 45.09 2.69
2245 2628 4.756642 CACACATGACTGTACAGGTCAAAT 59.243 41.667 26.12 15.12 45.09 2.32
2246 2629 5.239306 CACACATGACTGTACAGGTCAAATT 59.761 40.000 26.12 10.08 45.09 1.82
2247 2630 5.827797 ACACATGACTGTACAGGTCAAATTT 59.172 36.000 26.12 9.78 45.09 1.82
2248 2631 6.995686 ACACATGACTGTACAGGTCAAATTTA 59.004 34.615 26.12 1.22 45.09 1.40
2249 2632 7.500892 ACACATGACTGTACAGGTCAAATTTAA 59.499 33.333 26.12 5.19 45.09 1.52
2250 2633 7.803189 CACATGACTGTACAGGTCAAATTTAAC 59.197 37.037 26.12 0.00 45.09 2.01
2251 2634 7.500892 ACATGACTGTACAGGTCAAATTTAACA 59.499 33.333 26.12 8.93 45.09 2.41
2252 2635 7.867305 TGACTGTACAGGTCAAATTTAACAA 57.133 32.000 26.12 0.59 40.21 2.83
2253 2636 8.282455 TGACTGTACAGGTCAAATTTAACAAA 57.718 30.769 26.12 0.15 40.21 2.83
2254 2637 8.740906 TGACTGTACAGGTCAAATTTAACAAAA 58.259 29.630 26.12 0.00 40.21 2.44
2255 2638 8.920509 ACTGTACAGGTCAAATTTAACAAAAC 57.079 30.769 26.12 0.00 0.00 2.43
2256 2639 7.698970 ACTGTACAGGTCAAATTTAACAAAACG 59.301 33.333 26.12 0.00 0.00 3.60
2257 2640 5.959652 ACAGGTCAAATTTAACAAAACGC 57.040 34.783 0.00 0.00 0.00 4.84
2258 2641 4.501198 ACAGGTCAAATTTAACAAAACGCG 59.499 37.500 3.53 3.53 0.00 6.01
2259 2642 3.487942 AGGTCAAATTTAACAAAACGCGC 59.512 39.130 5.73 0.00 0.00 6.86
2260 2643 3.487942 GGTCAAATTTAACAAAACGCGCT 59.512 39.130 5.73 0.00 0.00 5.92
2261 2644 4.676018 GGTCAAATTTAACAAAACGCGCTA 59.324 37.500 5.73 0.00 0.00 4.26
2262 2645 5.164225 GGTCAAATTTAACAAAACGCGCTAG 60.164 40.000 5.73 0.00 0.00 3.42
2263 2646 5.622041 GTCAAATTTAACAAAACGCGCTAGA 59.378 36.000 5.73 0.00 0.00 2.43
2264 2647 6.141053 GTCAAATTTAACAAAACGCGCTAGAA 59.859 34.615 5.73 0.00 0.00 2.10
2265 2648 6.358558 TCAAATTTAACAAAACGCGCTAGAAG 59.641 34.615 5.73 0.00 0.00 2.85
2266 2649 5.600908 ATTTAACAAAACGCGCTAGAAGA 57.399 34.783 5.73 0.00 0.00 2.87
2267 2650 5.406767 TTTAACAAAACGCGCTAGAAGAA 57.593 34.783 5.73 0.00 0.00 2.52
2268 2651 3.955771 AACAAAACGCGCTAGAAGAAA 57.044 38.095 5.73 0.00 0.00 2.52
2269 2652 3.521524 ACAAAACGCGCTAGAAGAAAG 57.478 42.857 5.73 0.00 0.00 2.62
2270 2653 2.223377 ACAAAACGCGCTAGAAGAAAGG 59.777 45.455 5.73 0.00 0.00 3.11
2271 2654 0.796927 AAACGCGCTAGAAGAAAGGC 59.203 50.000 5.73 0.00 0.00 4.35
2272 2655 0.320421 AACGCGCTAGAAGAAAGGCA 60.320 50.000 5.73 0.00 0.00 4.75
2273 2656 0.320421 ACGCGCTAGAAGAAAGGCAA 60.320 50.000 5.73 0.00 0.00 4.52
2274 2657 0.796312 CGCGCTAGAAGAAAGGCAAA 59.204 50.000 5.56 0.00 0.00 3.68
2275 2658 1.398390 CGCGCTAGAAGAAAGGCAAAT 59.602 47.619 5.56 0.00 0.00 2.32
2276 2659 2.607635 CGCGCTAGAAGAAAGGCAAATA 59.392 45.455 5.56 0.00 0.00 1.40
2277 2660 3.248602 CGCGCTAGAAGAAAGGCAAATAT 59.751 43.478 5.56 0.00 0.00 1.28
2278 2661 4.531332 GCGCTAGAAGAAAGGCAAATATG 58.469 43.478 0.00 0.00 0.00 1.78
2279 2662 4.035675 GCGCTAGAAGAAAGGCAAATATGT 59.964 41.667 0.00 0.00 0.00 2.29
2280 2663 5.505286 CGCTAGAAGAAAGGCAAATATGTG 58.495 41.667 0.00 0.00 0.00 3.21
2281 2664 5.504665 CGCTAGAAGAAAGGCAAATATGTGG 60.505 44.000 0.00 0.00 0.00 4.17
2282 2665 5.590259 GCTAGAAGAAAGGCAAATATGTGGA 59.410 40.000 0.00 0.00 0.00 4.02
2283 2666 6.095440 GCTAGAAGAAAGGCAAATATGTGGAA 59.905 38.462 0.00 0.00 0.00 3.53
2284 2667 6.916360 AGAAGAAAGGCAAATATGTGGAAA 57.084 33.333 0.00 0.00 0.00 3.13
2285 2668 7.301868 AGAAGAAAGGCAAATATGTGGAAAA 57.698 32.000 0.00 0.00 0.00 2.29
2329 2712 5.103898 TGCCACACACCCCTATATGAAAATA 60.104 40.000 0.00 0.00 0.00 1.40
2330 2713 5.473504 GCCACACACCCCTATATGAAAATAG 59.526 44.000 0.00 0.00 0.00 1.73
2337 2720 8.641541 ACACCCCTATATGAAAATAGCATTTTG 58.358 33.333 10.33 0.00 0.00 2.44
2420 2861 9.927668 ACAGTTACCTTTAATGATCATTTTTGG 57.072 29.630 25.26 22.90 32.50 3.28
2421 2862 9.927668 CAGTTACCTTTAATGATCATTTTTGGT 57.072 29.630 25.26 26.27 33.36 3.67
2425 2866 8.133024 ACCTTTAATGATCATTTTTGGTAGCA 57.867 30.769 25.26 2.02 32.50 3.49
2426 2867 8.761689 ACCTTTAATGATCATTTTTGGTAGCAT 58.238 29.630 25.26 6.83 32.50 3.79
2431 2872 8.597662 AATGATCATTTTTGGTAGCATAATGC 57.402 30.769 15.36 10.59 45.46 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.383185 GGTACTAGCTGAGCAATCTGAGT 59.617 47.826 7.39 2.51 0.00 3.41
37 38 3.549827 CGGTACTAGCTGAGCAATCTGAG 60.550 52.174 7.39 0.00 0.00 3.35
38 39 2.359214 CGGTACTAGCTGAGCAATCTGA 59.641 50.000 7.39 0.00 0.00 3.27
103 110 3.443045 CCCCACGGCTCATGCAAC 61.443 66.667 0.00 0.00 41.91 4.17
240 257 1.402787 AAACCCTCAGCCAACAGTTG 58.597 50.000 6.28 6.28 0.00 3.16
259 279 1.519751 CCCGATGCACCGAACCAAAA 61.520 55.000 0.00 0.00 0.00 2.44
266 286 3.309436 CTTCCACCCGATGCACCGA 62.309 63.158 0.00 0.00 0.00 4.69
268 288 2.438434 CCTTCCACCCGATGCACC 60.438 66.667 0.00 0.00 0.00 5.01
280 300 1.177401 GGCAACAGATTCACCCTTCC 58.823 55.000 0.00 0.00 0.00 3.46
319 339 4.177026 CTCCAGATTTGTCCAGTAACTCG 58.823 47.826 0.00 0.00 0.00 4.18
328 348 1.373570 CTTCGGCTCCAGATTTGTCC 58.626 55.000 0.00 0.00 0.00 4.02
474 495 5.334879 GCTCAACAATGGTGTTCGATAACTT 60.335 40.000 0.00 0.00 45.00 2.66
528 562 6.365520 ACCTCACAGATAATTTATTGGTCCC 58.634 40.000 0.00 0.00 0.00 4.46
587 627 4.105486 TGTCACTGACGATCGATGAATTC 58.895 43.478 24.34 8.22 34.95 2.17
635 675 1.090052 CCCCGAGCATTTTCGAGGTC 61.090 60.000 0.00 0.00 43.03 3.85
697 738 2.429571 CGTGCACTGCCAACATGC 60.430 61.111 16.19 0.00 39.88 4.06
738 779 1.338105 CGACCAAGATGCTTCAGGTCA 60.338 52.381 28.03 0.00 43.82 4.02
754 795 1.235281 GGTTTGGCTCTTGGTCGACC 61.235 60.000 28.17 28.17 0.00 4.79
783 824 4.235762 ACGCAGGCTGGTGTCGTT 62.236 61.111 17.64 0.00 29.74 3.85
810 874 3.250040 GTGGTGTACACGAAGAAGCATTT 59.750 43.478 19.41 0.00 40.85 2.32
813 877 1.860676 GTGGTGTACACGAAGAAGCA 58.139 50.000 19.41 7.29 40.85 3.91
869 933 1.270678 GGATTTATAGCCGGCTCCGTT 60.271 52.381 36.73 18.83 37.81 4.44
871 935 3.139029 GGATTTATAGCCGGCTCCG 57.861 57.895 36.73 0.48 39.44 4.63
878 942 1.429463 CTGCGGACGGATTTATAGCC 58.571 55.000 0.00 0.00 0.00 3.93
902 966 2.092323 GGTTAGTTGGGAAGATGTGGC 58.908 52.381 0.00 0.00 0.00 5.01
917 981 7.988737 TGCTATCATTCAATTCAACTGGTTAG 58.011 34.615 0.00 0.00 0.00 2.34
1442 1509 3.604024 GTAGTCCTACGGGGGTCTT 57.396 57.895 1.87 0.00 35.33 3.01
1475 1542 2.288825 CCTGAACCGGATACATACGCAT 60.289 50.000 9.46 0.00 31.29 4.73
1476 1543 1.067974 CCTGAACCGGATACATACGCA 59.932 52.381 9.46 0.00 31.29 5.24
1505 1582 6.615264 AATTATTGCTCTGCTACACTGATG 57.385 37.500 0.00 0.00 0.00 3.07
1533 1613 1.614903 ACATAGTTTGTCACGGTCGGA 59.385 47.619 0.00 0.00 30.89 4.55
1574 1657 0.831711 GGAGAGAGGGGATGAGAGGC 60.832 65.000 0.00 0.00 0.00 4.70
1576 1659 0.178935 GGGGAGAGAGGGGATGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
1577 1660 1.942271 GGGGAGAGAGGGGATGAGA 59.058 63.158 0.00 0.00 0.00 3.27
1598 1681 4.519730 ACCCGTAGATGTCTAGTAGCATTC 59.480 45.833 8.03 0.00 0.00 2.67
1609 1692 2.487934 TCGTAGCTACCCGTAGATGTC 58.512 52.381 18.16 0.00 35.21 3.06
1614 1697 1.064654 GTGGTTCGTAGCTACCCGTAG 59.935 57.143 18.16 3.91 36.29 3.51
1615 1698 1.094785 GTGGTTCGTAGCTACCCGTA 58.905 55.000 18.16 0.00 32.24 4.02
1676 2039 3.433615 GGTTGAGATTCTCCAAAGACACG 59.566 47.826 11.12 0.00 0.00 4.49
1678 2041 3.071023 ACGGTTGAGATTCTCCAAAGACA 59.929 43.478 11.12 0.00 0.00 3.41
1679 2042 3.433615 CACGGTTGAGATTCTCCAAAGAC 59.566 47.826 11.12 2.83 0.00 3.01
1680 2043 3.557054 CCACGGTTGAGATTCTCCAAAGA 60.557 47.826 11.12 0.00 0.00 2.52
1681 2044 2.744202 CCACGGTTGAGATTCTCCAAAG 59.256 50.000 11.12 3.53 0.00 2.77
1682 2045 2.552155 CCCACGGTTGAGATTCTCCAAA 60.552 50.000 11.12 0.00 0.00 3.28
1685 2048 0.744771 GCCCACGGTTGAGATTCTCC 60.745 60.000 11.12 0.00 0.00 3.71
1686 2049 0.250513 AGCCCACGGTTGAGATTCTC 59.749 55.000 6.73 6.73 0.00 2.87
1687 2050 0.036010 CAGCCCACGGTTGAGATTCT 60.036 55.000 0.00 0.00 35.94 2.40
1688 2051 1.648467 GCAGCCCACGGTTGAGATTC 61.648 60.000 0.00 0.00 35.94 2.52
1689 2052 1.675641 GCAGCCCACGGTTGAGATT 60.676 57.895 0.00 0.00 35.94 2.40
1692 2055 1.526575 AAATGCAGCCCACGGTTGAG 61.527 55.000 0.00 0.00 35.94 3.02
1694 2057 1.373246 CAAATGCAGCCCACGGTTG 60.373 57.895 0.00 0.00 36.98 3.77
1695 2058 2.573083 CCAAATGCAGCCCACGGTT 61.573 57.895 0.00 0.00 0.00 4.44
1698 2061 1.080569 GAACCAAATGCAGCCCACG 60.081 57.895 0.00 0.00 0.00 4.94
1699 2062 0.037975 CTGAACCAAATGCAGCCCAC 60.038 55.000 0.00 0.00 0.00 4.61
1700 2063 1.818959 GCTGAACCAAATGCAGCCCA 61.819 55.000 0.00 0.00 46.94 5.36
1701 2064 1.079612 GCTGAACCAAATGCAGCCC 60.080 57.895 0.00 0.00 46.94 5.19
1702 2065 4.584688 GCTGAACCAAATGCAGCC 57.415 55.556 0.00 0.00 46.94 4.85
1725 2088 9.744468 GGCTTTTCAAAGTAGAAGTTGATAAAA 57.256 29.630 1.37 0.00 38.28 1.52
1726 2089 8.908903 TGGCTTTTCAAAGTAGAAGTTGATAAA 58.091 29.630 1.37 0.00 38.28 1.40
1727 2090 8.458573 TGGCTTTTCAAAGTAGAAGTTGATAA 57.541 30.769 1.37 0.00 38.28 1.75
1728 2091 8.458573 TTGGCTTTTCAAAGTAGAAGTTGATA 57.541 30.769 1.37 0.00 38.28 2.15
1729 2092 6.959639 TGGCTTTTCAAAGTAGAAGTTGAT 57.040 33.333 1.37 0.00 38.28 2.57
1730 2093 6.767524 TTGGCTTTTCAAAGTAGAAGTTGA 57.232 33.333 1.37 0.00 38.28 3.18
1731 2094 7.464577 GCTTTTGGCTTTTCAAAGTAGAAGTTG 60.465 37.037 1.37 0.00 37.82 3.16
1732 2095 6.535150 GCTTTTGGCTTTTCAAAGTAGAAGTT 59.465 34.615 1.37 0.00 37.82 2.66
1733 2096 6.042777 GCTTTTGGCTTTTCAAAGTAGAAGT 58.957 36.000 1.37 0.00 37.82 3.01
1734 2097 6.516478 GCTTTTGGCTTTTCAAAGTAGAAG 57.484 37.500 1.37 3.86 37.82 2.85
1749 2112 1.001974 CCCCTTTGGTTAGCTTTTGGC 59.998 52.381 0.00 0.00 42.19 4.52
1761 2124 4.202305 TGCTTTGAACATTTACCCCTTTGG 60.202 41.667 0.00 0.00 41.37 3.28
1762 2125 4.954875 TGCTTTGAACATTTACCCCTTTG 58.045 39.130 0.00 0.00 0.00 2.77
1763 2126 4.653801 ACTGCTTTGAACATTTACCCCTTT 59.346 37.500 0.00 0.00 0.00 3.11
1764 2127 4.223144 ACTGCTTTGAACATTTACCCCTT 58.777 39.130 0.00 0.00 0.00 3.95
1765 2128 3.844640 ACTGCTTTGAACATTTACCCCT 58.155 40.909 0.00 0.00 0.00 4.79
1766 2129 4.600692 AACTGCTTTGAACATTTACCCC 57.399 40.909 0.00 0.00 0.00 4.95
1767 2130 6.536941 TCAAAAACTGCTTTGAACATTTACCC 59.463 34.615 3.74 0.00 41.25 3.69
1768 2131 7.491048 TCTCAAAAACTGCTTTGAACATTTACC 59.509 33.333 6.88 0.00 43.03 2.85
1769 2132 8.406172 TCTCAAAAACTGCTTTGAACATTTAC 57.594 30.769 6.88 0.00 43.03 2.01
1770 2133 8.994429 TTCTCAAAAACTGCTTTGAACATTTA 57.006 26.923 6.88 0.00 43.03 1.40
1771 2134 7.903995 TTCTCAAAAACTGCTTTGAACATTT 57.096 28.000 6.88 0.00 43.03 2.32
1772 2135 7.983484 AGATTCTCAAAAACTGCTTTGAACATT 59.017 29.630 6.88 0.00 43.03 2.71
1773 2136 7.437267 CAGATTCTCAAAAACTGCTTTGAACAT 59.563 33.333 6.88 3.14 43.03 2.71
1774 2137 6.753279 CAGATTCTCAAAAACTGCTTTGAACA 59.247 34.615 6.88 0.00 43.03 3.18
1775 2138 6.753744 ACAGATTCTCAAAAACTGCTTTGAAC 59.246 34.615 6.88 1.63 43.03 3.18
1776 2139 6.866480 ACAGATTCTCAAAAACTGCTTTGAA 58.134 32.000 6.88 0.00 43.03 2.69
1777 2140 6.455360 ACAGATTCTCAAAAACTGCTTTGA 57.545 33.333 0.00 5.66 41.80 2.69
1778 2141 6.361748 GCTACAGATTCTCAAAAACTGCTTTG 59.638 38.462 0.00 0.00 37.59 2.77
1779 2142 6.264067 AGCTACAGATTCTCAAAAACTGCTTT 59.736 34.615 0.00 0.00 32.67 3.51
1780 2143 5.767168 AGCTACAGATTCTCAAAAACTGCTT 59.233 36.000 0.00 0.00 32.67 3.91
1781 2144 5.312079 AGCTACAGATTCTCAAAAACTGCT 58.688 37.500 0.00 0.00 32.67 4.24
1782 2145 5.619625 AGCTACAGATTCTCAAAAACTGC 57.380 39.130 0.00 0.00 32.67 4.40
1783 2146 7.432350 AGAAGCTACAGATTCTCAAAAACTG 57.568 36.000 3.95 0.00 46.57 3.16
1793 2156 4.500716 GCACTAGGGAGAAGCTACAGATTC 60.501 50.000 0.00 0.00 40.47 2.52
1794 2157 3.386402 GCACTAGGGAGAAGCTACAGATT 59.614 47.826 0.00 0.00 0.00 2.40
1795 2158 2.962421 GCACTAGGGAGAAGCTACAGAT 59.038 50.000 0.00 0.00 0.00 2.90
1796 2159 2.291605 TGCACTAGGGAGAAGCTACAGA 60.292 50.000 0.00 0.00 0.00 3.41
1797 2160 2.103373 TGCACTAGGGAGAAGCTACAG 58.897 52.381 0.00 0.00 0.00 2.74
1798 2161 2.231716 TGCACTAGGGAGAAGCTACA 57.768 50.000 0.00 0.00 0.00 2.74
1799 2162 3.611766 TTTGCACTAGGGAGAAGCTAC 57.388 47.619 0.00 0.00 0.00 3.58
1800 2163 4.844349 AATTTGCACTAGGGAGAAGCTA 57.156 40.909 0.00 0.00 0.00 3.32
1801 2164 3.728385 AATTTGCACTAGGGAGAAGCT 57.272 42.857 0.00 0.00 0.00 3.74
1802 2165 3.758554 TGAAATTTGCACTAGGGAGAAGC 59.241 43.478 0.00 0.00 0.00 3.86
1803 2166 5.964958 TTGAAATTTGCACTAGGGAGAAG 57.035 39.130 0.00 0.00 0.00 2.85
1804 2167 5.833131 ACTTTGAAATTTGCACTAGGGAGAA 59.167 36.000 0.00 0.00 0.00 2.87
1805 2168 5.385198 ACTTTGAAATTTGCACTAGGGAGA 58.615 37.500 0.00 0.00 0.00 3.71
1806 2169 5.712152 ACTTTGAAATTTGCACTAGGGAG 57.288 39.130 0.00 0.00 0.00 4.30
1807 2170 5.221422 CCAACTTTGAAATTTGCACTAGGGA 60.221 40.000 0.00 0.00 0.00 4.20
1808 2171 4.990426 CCAACTTTGAAATTTGCACTAGGG 59.010 41.667 0.00 0.00 0.00 3.53
1809 2172 4.990426 CCCAACTTTGAAATTTGCACTAGG 59.010 41.667 0.00 0.00 0.00 3.02
1810 2173 5.600696 ACCCAACTTTGAAATTTGCACTAG 58.399 37.500 0.00 0.00 0.00 2.57
1811 2174 5.606348 ACCCAACTTTGAAATTTGCACTA 57.394 34.783 0.00 0.00 0.00 2.74
1812 2175 4.486125 ACCCAACTTTGAAATTTGCACT 57.514 36.364 0.00 0.00 0.00 4.40
1813 2176 5.408299 GGATACCCAACTTTGAAATTTGCAC 59.592 40.000 0.00 0.00 0.00 4.57
1814 2177 5.306678 AGGATACCCAACTTTGAAATTTGCA 59.693 36.000 0.00 0.00 33.88 4.08
1815 2178 5.793817 AGGATACCCAACTTTGAAATTTGC 58.206 37.500 0.00 0.00 33.88 3.68
1816 2179 8.585018 AGTTAGGATACCCAACTTTGAAATTTG 58.415 33.333 0.00 1.50 33.21 2.32
1817 2180 8.721133 AGTTAGGATACCCAACTTTGAAATTT 57.279 30.769 0.00 0.00 33.21 1.82
1818 2181 8.721133 AAGTTAGGATACCCAACTTTGAAATT 57.279 30.769 8.14 0.00 38.98 1.82
1819 2182 8.721133 AAAGTTAGGATACCCAACTTTGAAAT 57.279 30.769 19.90 3.01 43.63 2.17
1820 2183 8.541899 AAAAGTTAGGATACCCAACTTTGAAA 57.458 30.769 20.78 0.00 44.00 2.69
1821 2184 7.780745 TGAAAAGTTAGGATACCCAACTTTGAA 59.219 33.333 20.78 12.95 44.00 2.69
1822 2185 7.291566 TGAAAAGTTAGGATACCCAACTTTGA 58.708 34.615 20.78 12.08 44.00 2.69
1823 2186 7.519032 TGAAAAGTTAGGATACCCAACTTTG 57.481 36.000 20.78 0.00 44.00 2.77
1824 2187 6.208797 GCTGAAAAGTTAGGATACCCAACTTT 59.791 38.462 16.72 16.72 45.14 2.66
1825 2188 5.710567 GCTGAAAAGTTAGGATACCCAACTT 59.289 40.000 8.14 8.14 41.31 2.66
1826 2189 5.014228 AGCTGAAAAGTTAGGATACCCAACT 59.986 40.000 0.00 0.00 36.23 3.16
1827 2190 5.254115 AGCTGAAAAGTTAGGATACCCAAC 58.746 41.667 0.00 0.00 33.88 3.77
1828 2191 5.514500 AGCTGAAAAGTTAGGATACCCAA 57.486 39.130 0.00 0.00 33.88 4.12
1829 2192 5.514500 AAGCTGAAAAGTTAGGATACCCA 57.486 39.130 0.00 0.00 33.88 4.51
1830 2193 5.944007 TGAAAGCTGAAAAGTTAGGATACCC 59.056 40.000 0.00 0.00 37.17 3.69
1831 2194 7.078011 CTGAAAGCTGAAAAGTTAGGATACC 57.922 40.000 0.00 0.00 37.17 2.73
1849 2212 2.544486 GCTGTTGTGGAAAGGCTGAAAG 60.544 50.000 0.00 0.00 0.00 2.62
1850 2213 1.408702 GCTGTTGTGGAAAGGCTGAAA 59.591 47.619 0.00 0.00 0.00 2.69
1851 2214 1.032014 GCTGTTGTGGAAAGGCTGAA 58.968 50.000 0.00 0.00 0.00 3.02
1852 2215 0.183492 AGCTGTTGTGGAAAGGCTGA 59.817 50.000 0.00 0.00 0.00 4.26
1853 2216 1.035139 AAGCTGTTGTGGAAAGGCTG 58.965 50.000 0.00 0.00 0.00 4.85
1854 2217 1.780503 AAAGCTGTTGTGGAAAGGCT 58.219 45.000 0.00 0.00 0.00 4.58
1855 2218 2.602257 AAAAGCTGTTGTGGAAAGGC 57.398 45.000 0.00 0.00 0.00 4.35
1856 2219 4.114794 CTGAAAAAGCTGTTGTGGAAAGG 58.885 43.478 0.00 0.00 0.00 3.11
1857 2220 4.997565 TCTGAAAAAGCTGTTGTGGAAAG 58.002 39.130 0.00 0.00 0.00 2.62
1858 2221 5.398603 TTCTGAAAAAGCTGTTGTGGAAA 57.601 34.783 0.00 0.00 0.00 3.13
1859 2222 5.360714 AGATTCTGAAAAAGCTGTTGTGGAA 59.639 36.000 0.00 0.00 0.00 3.53
1860 2223 4.889409 AGATTCTGAAAAAGCTGTTGTGGA 59.111 37.500 0.00 0.00 0.00 4.02
1861 2224 4.980434 CAGATTCTGAAAAAGCTGTTGTGG 59.020 41.667 8.00 0.00 37.76 4.17
1862 2225 4.443394 GCAGATTCTGAAAAAGCTGTTGTG 59.557 41.667 17.87 0.00 43.02 3.33
1863 2226 4.098349 TGCAGATTCTGAAAAAGCTGTTGT 59.902 37.500 17.87 0.00 43.02 3.32
1864 2227 4.613944 TGCAGATTCTGAAAAAGCTGTTG 58.386 39.130 17.87 0.00 43.02 3.33
1865 2228 4.795308 GCTGCAGATTCTGAAAAAGCTGTT 60.795 41.667 20.43 0.00 43.02 3.16
1866 2229 3.305199 GCTGCAGATTCTGAAAAAGCTGT 60.305 43.478 20.43 0.00 43.02 4.40
1867 2230 3.057456 AGCTGCAGATTCTGAAAAAGCTG 60.057 43.478 20.43 11.15 43.73 4.24
1868 2231 3.155501 AGCTGCAGATTCTGAAAAAGCT 58.844 40.909 20.43 18.85 33.83 3.74
1869 2232 3.057736 TGAGCTGCAGATTCTGAAAAAGC 60.058 43.478 20.43 17.19 32.44 3.51
1870 2233 4.761235 TGAGCTGCAGATTCTGAAAAAG 57.239 40.909 20.43 9.23 32.44 2.27
1871 2234 4.261741 GGTTGAGCTGCAGATTCTGAAAAA 60.262 41.667 20.43 1.39 32.44 1.94
1872 2235 3.254166 GGTTGAGCTGCAGATTCTGAAAA 59.746 43.478 20.43 1.76 32.44 2.29
1873 2236 2.816087 GGTTGAGCTGCAGATTCTGAAA 59.184 45.455 20.43 3.79 32.44 2.69
1874 2237 2.224597 TGGTTGAGCTGCAGATTCTGAA 60.225 45.455 20.43 5.97 32.44 3.02
1875 2238 1.348696 TGGTTGAGCTGCAGATTCTGA 59.651 47.619 20.43 0.00 32.44 3.27
1876 2239 1.817357 TGGTTGAGCTGCAGATTCTG 58.183 50.000 20.43 9.40 34.12 3.02
1877 2240 2.555757 GTTTGGTTGAGCTGCAGATTCT 59.444 45.455 20.43 4.69 0.00 2.40
1878 2241 2.294233 TGTTTGGTTGAGCTGCAGATTC 59.706 45.455 20.43 14.56 0.00 2.52
1879 2242 2.309613 TGTTTGGTTGAGCTGCAGATT 58.690 42.857 20.43 4.00 0.00 2.40
1880 2243 1.985473 TGTTTGGTTGAGCTGCAGAT 58.015 45.000 20.43 12.64 0.00 2.90
1881 2244 1.761449 TTGTTTGGTTGAGCTGCAGA 58.239 45.000 20.43 0.00 0.00 4.26
1882 2245 2.466846 CTTTGTTTGGTTGAGCTGCAG 58.533 47.619 10.11 10.11 0.00 4.41
1883 2246 1.471327 GCTTTGTTTGGTTGAGCTGCA 60.471 47.619 1.02 0.00 0.00 4.41
1884 2247 1.211743 GCTTTGTTTGGTTGAGCTGC 58.788 50.000 0.00 0.00 0.00 5.25
1885 2248 1.410153 AGGCTTTGTTTGGTTGAGCTG 59.590 47.619 0.00 0.00 33.96 4.24
1886 2249 1.780503 AGGCTTTGTTTGGTTGAGCT 58.219 45.000 0.00 0.00 33.96 4.09
1887 2250 2.623416 ACTAGGCTTTGTTTGGTTGAGC 59.377 45.455 0.00 0.00 0.00 4.26
1888 2251 3.550842 GCACTAGGCTTTGTTTGGTTGAG 60.551 47.826 0.00 0.00 40.25 3.02
1889 2252 2.360801 GCACTAGGCTTTGTTTGGTTGA 59.639 45.455 0.00 0.00 40.25 3.18
1890 2253 2.742774 GCACTAGGCTTTGTTTGGTTG 58.257 47.619 0.00 0.00 40.25 3.77
1902 2265 0.886490 AAGTGTGTGCAGCACTAGGC 60.886 55.000 25.83 13.58 45.36 3.93
1903 2266 1.265095 CAAAGTGTGTGCAGCACTAGG 59.735 52.381 25.83 13.19 45.36 3.02
1904 2267 1.265095 CCAAAGTGTGTGCAGCACTAG 59.735 52.381 25.83 15.96 45.36 2.57
1905 2268 1.134250 TCCAAAGTGTGTGCAGCACTA 60.134 47.619 25.83 12.55 45.36 2.74
1908 2271 0.107263 TCTCCAAAGTGTGTGCAGCA 60.107 50.000 0.00 0.00 0.00 4.41
1909 2272 1.024271 TTCTCCAAAGTGTGTGCAGC 58.976 50.000 0.00 0.00 0.00 5.25
1910 2273 3.144506 AGATTCTCCAAAGTGTGTGCAG 58.855 45.455 0.00 0.00 0.00 4.41
1911 2274 3.141398 GAGATTCTCCAAAGTGTGTGCA 58.859 45.455 1.97 0.00 0.00 4.57
1912 2275 3.141398 TGAGATTCTCCAAAGTGTGTGC 58.859 45.455 11.12 0.00 0.00 4.57
1913 2276 4.818546 AGTTGAGATTCTCCAAAGTGTGTG 59.181 41.667 11.12 0.00 0.00 3.82
1914 2277 4.818546 CAGTTGAGATTCTCCAAAGTGTGT 59.181 41.667 11.12 0.00 0.00 3.72
1915 2278 4.818546 ACAGTTGAGATTCTCCAAAGTGTG 59.181 41.667 19.03 8.23 32.54 3.82
1916 2279 4.818546 CACAGTTGAGATTCTCCAAAGTGT 59.181 41.667 16.06 16.06 33.37 3.55
1917 2280 4.214971 CCACAGTTGAGATTCTCCAAAGTG 59.785 45.833 11.12 13.56 0.00 3.16
1918 2281 4.141390 ACCACAGTTGAGATTCTCCAAAGT 60.141 41.667 11.12 0.35 0.00 2.66
1919 2282 4.392940 ACCACAGTTGAGATTCTCCAAAG 58.607 43.478 11.12 2.16 0.00 2.77
1920 2283 4.437682 ACCACAGTTGAGATTCTCCAAA 57.562 40.909 11.12 0.00 0.00 3.28
1921 2284 4.437682 AACCACAGTTGAGATTCTCCAA 57.562 40.909 11.12 3.34 33.97 3.53
1922 2285 5.071788 ACTTAACCACAGTTGAGATTCTCCA 59.928 40.000 11.12 0.00 41.03 3.86
1923 2286 5.409826 CACTTAACCACAGTTGAGATTCTCC 59.590 44.000 11.12 0.00 41.03 3.71
1924 2287 5.106908 GCACTTAACCACAGTTGAGATTCTC 60.107 44.000 6.73 6.73 41.03 2.87
1925 2288 4.757149 GCACTTAACCACAGTTGAGATTCT 59.243 41.667 4.92 0.00 41.03 2.40
1926 2289 4.757149 AGCACTTAACCACAGTTGAGATTC 59.243 41.667 4.92 0.00 41.03 2.52
1927 2290 4.516698 CAGCACTTAACCACAGTTGAGATT 59.483 41.667 4.92 0.00 41.03 2.40
1928 2291 4.067896 CAGCACTTAACCACAGTTGAGAT 58.932 43.478 4.92 0.00 41.03 2.75
1929 2292 3.466836 CAGCACTTAACCACAGTTGAGA 58.533 45.455 4.92 0.00 41.03 3.27
1930 2293 2.031682 GCAGCACTTAACCACAGTTGAG 60.032 50.000 0.00 0.00 43.43 3.02
1931 2294 1.946768 GCAGCACTTAACCACAGTTGA 59.053 47.619 0.00 0.00 36.68 3.18
1932 2295 1.675483 TGCAGCACTTAACCACAGTTG 59.325 47.619 0.00 0.00 36.68 3.16
1933 2296 1.676006 GTGCAGCACTTAACCACAGTT 59.324 47.619 18.92 0.00 40.15 3.16
1934 2297 1.308998 GTGCAGCACTTAACCACAGT 58.691 50.000 18.92 0.00 0.00 3.55
1935 2298 1.002468 GTGTGCAGCACTTAACCACAG 60.002 52.381 25.83 0.00 44.41 3.66
1936 2299 1.021202 GTGTGCAGCACTTAACCACA 58.979 50.000 25.83 0.16 44.41 4.17
1948 2311 2.097661 CTGCAGTCACGTGTGTGCAG 62.098 60.000 36.85 36.85 46.64 4.41
1951 2314 3.363969 GCATCTGCAGTCACGTGTGTG 62.364 57.143 16.51 14.69 43.45 3.82
1952 2315 1.224069 GCATCTGCAGTCACGTGTGT 61.224 55.000 16.51 0.48 41.59 3.72
1978 2361 1.477558 CCTGACCTGAAAAGGCACAGT 60.478 52.381 14.22 0.00 36.03 3.55
1980 2363 0.550914 ACCTGACCTGAAAAGGCACA 59.449 50.000 0.00 0.00 34.18 4.57
1987 2370 1.815408 GCTGCTTCACCTGACCTGAAA 60.815 52.381 0.00 0.00 0.00 2.69
1988 2371 0.250467 GCTGCTTCACCTGACCTGAA 60.250 55.000 0.00 0.00 0.00 3.02
1989 2372 1.123861 AGCTGCTTCACCTGACCTGA 61.124 55.000 0.00 0.00 0.00 3.86
1990 2373 0.250640 AAGCTGCTTCACCTGACCTG 60.251 55.000 9.53 0.00 0.00 4.00
1991 2374 0.250640 CAAGCTGCTTCACCTGACCT 60.251 55.000 12.82 0.00 0.00 3.85
1992 2375 1.239968 CCAAGCTGCTTCACCTGACC 61.240 60.000 12.82 0.00 0.00 4.02
1993 2376 0.250467 TCCAAGCTGCTTCACCTGAC 60.250 55.000 12.82 0.00 0.00 3.51
1994 2377 0.694771 ATCCAAGCTGCTTCACCTGA 59.305 50.000 12.82 4.90 0.00 3.86
1995 2378 0.809385 CATCCAAGCTGCTTCACCTG 59.191 55.000 12.82 1.21 0.00 4.00
1996 2379 0.403271 ACATCCAAGCTGCTTCACCT 59.597 50.000 12.82 0.00 0.00 4.00
1997 2380 2.113860 TACATCCAAGCTGCTTCACC 57.886 50.000 12.82 0.00 0.00 4.02
1998 2381 2.159653 CGTTACATCCAAGCTGCTTCAC 60.160 50.000 12.82 0.50 0.00 3.18
1999 2382 2.076100 CGTTACATCCAAGCTGCTTCA 58.924 47.619 12.82 2.23 0.00 3.02
2000 2383 2.076863 ACGTTACATCCAAGCTGCTTC 58.923 47.619 12.82 0.00 0.00 3.86
2001 2384 2.076863 GACGTTACATCCAAGCTGCTT 58.923 47.619 9.53 9.53 0.00 3.91
2002 2385 1.726853 GACGTTACATCCAAGCTGCT 58.273 50.000 0.00 0.00 0.00 4.24
2003 2386 0.370273 CGACGTTACATCCAAGCTGC 59.630 55.000 0.00 0.00 0.00 5.25
2004 2387 0.370273 GCGACGTTACATCCAAGCTG 59.630 55.000 0.00 0.00 0.00 4.24
2005 2388 0.739813 GGCGACGTTACATCCAAGCT 60.740 55.000 0.00 0.00 0.00 3.74
2006 2389 0.739813 AGGCGACGTTACATCCAAGC 60.740 55.000 0.00 0.00 0.00 4.01
2007 2390 1.278238 GAGGCGACGTTACATCCAAG 58.722 55.000 0.00 0.00 0.00 3.61
2008 2391 0.108520 GGAGGCGACGTTACATCCAA 60.109 55.000 15.11 0.00 0.00 3.53
2009 2392 1.514087 GGAGGCGACGTTACATCCA 59.486 57.895 15.11 0.00 0.00 3.41
2010 2393 1.588139 CGGAGGCGACGTTACATCC 60.588 63.158 11.23 11.23 0.00 3.51
2011 2394 0.179156 TTCGGAGGCGACGTTACATC 60.179 55.000 0.00 0.00 0.00 3.06
2012 2395 0.179145 CTTCGGAGGCGACGTTACAT 60.179 55.000 0.00 0.00 0.00 2.29
2013 2396 1.210931 CTTCGGAGGCGACGTTACA 59.789 57.895 0.00 0.00 0.00 2.41
2014 2397 0.796113 GTCTTCGGAGGCGACGTTAC 60.796 60.000 0.00 0.00 0.00 2.50
2015 2398 1.503542 GTCTTCGGAGGCGACGTTA 59.496 57.895 0.00 0.00 0.00 3.18
2016 2399 2.257676 GTCTTCGGAGGCGACGTT 59.742 61.111 0.00 0.00 0.00 3.99
2022 2405 1.446272 CCAAGTCGTCTTCGGAGGC 60.446 63.158 0.00 0.00 37.69 4.70
2023 2406 1.446272 GCCAAGTCGTCTTCGGAGG 60.446 63.158 12.43 4.30 37.69 4.30
2024 2407 0.809385 TAGCCAAGTCGTCTTCGGAG 59.191 55.000 12.43 0.00 37.69 4.63
2025 2408 0.809385 CTAGCCAAGTCGTCTTCGGA 59.191 55.000 12.43 0.00 37.69 4.55
2026 2409 0.526662 ACTAGCCAAGTCGTCTTCGG 59.473 55.000 0.00 0.00 30.33 4.30
2027 2410 1.068472 ACACTAGCCAAGTCGTCTTCG 60.068 52.381 0.00 0.00 35.76 3.79
2028 2411 2.597520 GACACTAGCCAAGTCGTCTTC 58.402 52.381 0.00 0.00 35.76 2.87
2029 2412 2.726832 GACACTAGCCAAGTCGTCTT 57.273 50.000 0.00 0.00 35.76 3.01
2034 2417 2.445438 GCGCGACACTAGCCAAGTC 61.445 63.158 12.10 0.00 35.76 3.01
2035 2418 2.432628 GCGCGACACTAGCCAAGT 60.433 61.111 12.10 0.00 39.81 3.16
2036 2419 2.432456 TGCGCGACACTAGCCAAG 60.432 61.111 12.10 0.00 0.00 3.61
2037 2420 2.736995 GTGCGCGACACTAGCCAA 60.737 61.111 21.16 0.00 46.41 4.52
2045 2428 2.028925 AGTCATGTGTGCGCGACA 59.971 55.556 12.10 13.76 0.00 4.35
2046 2429 1.006825 TACAGTCATGTGTGCGCGAC 61.007 55.000 12.10 5.96 40.79 5.19
2047 2430 0.732538 CTACAGTCATGTGTGCGCGA 60.733 55.000 12.10 0.00 40.79 5.87
2048 2431 0.732538 TCTACAGTCATGTGTGCGCG 60.733 55.000 0.00 0.00 40.79 6.86
2049 2432 1.325640 CATCTACAGTCATGTGTGCGC 59.674 52.381 0.00 0.00 40.79 6.09
2050 2433 1.325640 GCATCTACAGTCATGTGTGCG 59.674 52.381 0.00 0.00 40.79 5.34
2051 2434 2.625737 AGCATCTACAGTCATGTGTGC 58.374 47.619 0.00 6.96 40.79 4.57
2052 2435 4.092529 GTGAAGCATCTACAGTCATGTGTG 59.907 45.833 0.00 0.00 40.79 3.82
2057 2440 3.445450 AGACGTGAAGCATCTACAGTCAT 59.555 43.478 0.00 0.00 0.00 3.06
2064 2447 2.231235 TGAAGCAGACGTGAAGCATCTA 59.769 45.455 0.00 0.00 0.00 1.98
2081 2464 1.576421 GAAAGGCACAGGCGTGAAG 59.424 57.895 14.38 6.34 46.80 3.02
2082 2465 1.896660 GGAAAGGCACAGGCGTGAA 60.897 57.895 14.38 0.00 46.80 3.18
2083 2466 2.281484 GGAAAGGCACAGGCGTGA 60.281 61.111 14.38 0.00 46.80 4.35
2084 2467 2.594303 TGGAAAGGCACAGGCGTG 60.594 61.111 4.53 4.53 46.56 5.34
2085 2468 2.281761 CTGGAAAGGCACAGGCGT 60.282 61.111 0.00 0.00 42.47 5.68
2086 2469 3.058160 CCTGGAAAGGCACAGGCG 61.058 66.667 0.00 0.00 46.78 5.52
2089 2472 0.610232 CTTCCCCTGGAAAGGCACAG 60.610 60.000 0.00 0.00 41.54 3.66
2090 2473 1.460255 CTTCCCCTGGAAAGGCACA 59.540 57.895 0.00 0.00 41.54 4.57
2091 2474 1.979155 GCTTCCCCTGGAAAGGCAC 60.979 63.158 0.00 0.00 41.54 5.01
2092 2475 2.430704 CTGCTTCCCCTGGAAAGGCA 62.431 60.000 8.83 8.83 41.54 4.75
2093 2476 1.680314 CTGCTTCCCCTGGAAAGGC 60.680 63.158 0.00 0.00 41.54 4.35
2094 2477 1.680314 GCTGCTTCCCCTGGAAAGG 60.680 63.158 0.00 0.00 41.54 3.11
2095 2478 0.251519 AAGCTGCTTCCCCTGGAAAG 60.252 55.000 9.53 0.00 41.54 2.62
2096 2479 0.540365 CAAGCTGCTTCCCCTGGAAA 60.540 55.000 12.82 0.00 41.54 3.13
2097 2480 1.075482 CAAGCTGCTTCCCCTGGAA 59.925 57.895 12.82 0.00 39.66 3.53
2098 2481 2.759114 CAAGCTGCTTCCCCTGGA 59.241 61.111 12.82 0.00 0.00 3.86
2099 2482 2.362120 CCAAGCTGCTTCCCCTGG 60.362 66.667 12.82 7.46 0.00 4.45
2100 2483 3.066814 GCCAAGCTGCTTCCCCTG 61.067 66.667 12.82 1.21 0.00 4.45
2101 2484 3.263259 AGCCAAGCTGCTTCCCCT 61.263 61.111 12.82 6.07 38.85 4.79
2116 2499 1.398390 CTTCGGAGGCAACATTACAGC 59.602 52.381 0.00 0.00 41.41 4.40
2117 2500 2.673368 GTCTTCGGAGGCAACATTACAG 59.327 50.000 0.00 0.00 41.41 2.74
2118 2501 2.695359 GTCTTCGGAGGCAACATTACA 58.305 47.619 0.00 0.00 41.41 2.41
2119 2502 1.659098 CGTCTTCGGAGGCAACATTAC 59.341 52.381 0.00 0.00 41.41 1.89
2120 2503 1.546923 TCGTCTTCGGAGGCAACATTA 59.453 47.619 0.00 0.00 36.94 1.90
2121 2504 0.320374 TCGTCTTCGGAGGCAACATT 59.680 50.000 0.00 0.00 36.94 2.71
2122 2505 0.389948 GTCGTCTTCGGAGGCAACAT 60.390 55.000 0.00 0.00 36.94 2.71
2123 2506 1.006571 GTCGTCTTCGGAGGCAACA 60.007 57.895 0.00 0.00 36.94 3.33
2124 2507 0.389948 ATGTCGTCTTCGGAGGCAAC 60.390 55.000 0.00 0.00 37.69 4.17
2125 2508 0.389817 CATGTCGTCTTCGGAGGCAA 60.390 55.000 0.00 0.00 37.69 4.52
2126 2509 1.215382 CATGTCGTCTTCGGAGGCA 59.785 57.895 0.00 0.00 37.69 4.75
2127 2510 2.167861 GCATGTCGTCTTCGGAGGC 61.168 63.158 0.00 0.00 37.69 4.70
2128 2511 1.519455 GGCATGTCGTCTTCGGAGG 60.519 63.158 0.00 0.00 37.69 4.30
2129 2512 1.519455 GGGCATGTCGTCTTCGGAG 60.519 63.158 0.00 0.00 37.69 4.63
2130 2513 2.577059 GGGCATGTCGTCTTCGGA 59.423 61.111 0.00 0.00 37.69 4.55
2131 2514 2.885644 CGGGCATGTCGTCTTCGG 60.886 66.667 0.00 0.00 37.69 4.30
2132 2515 2.126071 ACGGGCATGTCGTCTTCG 60.126 61.111 9.76 1.35 35.87 3.79
2148 2531 0.250513 ATTCTTCAGAGGCACGGGAC 59.749 55.000 0.00 0.00 0.00 4.46
2149 2532 0.984230 AATTCTTCAGAGGCACGGGA 59.016 50.000 0.00 0.00 0.00 5.14
2150 2533 1.339055 TGAATTCTTCAGAGGCACGGG 60.339 52.381 7.05 0.00 34.08 5.28
2151 2534 1.734465 GTGAATTCTTCAGAGGCACGG 59.266 52.381 7.05 0.00 41.01 4.94
2152 2535 2.416747 TGTGAATTCTTCAGAGGCACG 58.583 47.619 7.05 0.00 41.01 5.34
2153 2536 4.094590 CAGATGTGAATTCTTCAGAGGCAC 59.905 45.833 7.05 0.00 41.01 5.01
2154 2537 4.259356 CAGATGTGAATTCTTCAGAGGCA 58.741 43.478 7.05 0.00 41.01 4.75
2155 2538 4.260170 ACAGATGTGAATTCTTCAGAGGC 58.740 43.478 7.05 0.00 41.01 4.70
2169 2552 8.729135 TGTAAAGTATGTACGTGCACAGATGTG 61.729 40.741 18.64 8.62 39.29 3.21
2170 2553 3.868757 AGTATGTACGTGCACAGATGT 57.131 42.857 18.64 9.00 0.00 3.06
2171 2554 5.575218 TGTAAAGTATGTACGTGCACAGATG 59.425 40.000 18.64 2.44 28.83 2.90
2172 2555 5.716094 TGTAAAGTATGTACGTGCACAGAT 58.284 37.500 18.64 4.82 28.83 2.90
2173 2556 5.123805 TGTAAAGTATGTACGTGCACAGA 57.876 39.130 18.64 0.00 28.83 3.41
2174 2557 5.785356 CATGTAAAGTATGTACGTGCACAG 58.215 41.667 18.64 12.16 38.83 3.66
2175 2558 5.771602 CATGTAAAGTATGTACGTGCACA 57.228 39.130 18.64 0.00 38.83 4.57
2179 2562 5.106442 TGAGGCATGTAAAGTATGTACGTG 58.894 41.667 0.00 0.00 46.36 4.49
2180 2563 5.333299 TGAGGCATGTAAAGTATGTACGT 57.667 39.130 0.00 0.00 28.83 3.57
2181 2564 5.006358 GGTTGAGGCATGTAAAGTATGTACG 59.994 44.000 0.00 0.00 28.83 3.67
2182 2565 5.006358 CGGTTGAGGCATGTAAAGTATGTAC 59.994 44.000 0.00 0.00 0.00 2.90
2183 2566 5.113383 CGGTTGAGGCATGTAAAGTATGTA 58.887 41.667 0.00 0.00 0.00 2.29
2184 2567 3.938963 CGGTTGAGGCATGTAAAGTATGT 59.061 43.478 0.00 0.00 0.00 2.29
2185 2568 3.938963 ACGGTTGAGGCATGTAAAGTATG 59.061 43.478 0.00 0.00 0.00 2.39
2186 2569 3.938963 CACGGTTGAGGCATGTAAAGTAT 59.061 43.478 0.00 0.00 0.00 2.12
2187 2570 3.331150 CACGGTTGAGGCATGTAAAGTA 58.669 45.455 0.00 0.00 0.00 2.24
2188 2571 2.151202 CACGGTTGAGGCATGTAAAGT 58.849 47.619 0.00 0.00 0.00 2.66
2189 2572 1.468520 CCACGGTTGAGGCATGTAAAG 59.531 52.381 0.00 0.00 0.00 1.85
2190 2573 1.529226 CCACGGTTGAGGCATGTAAA 58.471 50.000 0.00 0.00 0.00 2.01
2191 2574 3.241493 CCACGGTTGAGGCATGTAA 57.759 52.632 0.00 0.00 0.00 2.41
2198 2581 1.079127 CACCTAGCCACGGTTGAGG 60.079 63.158 0.00 0.00 30.82 3.86
2199 2582 0.537188 ATCACCTAGCCACGGTTGAG 59.463 55.000 0.00 0.00 30.82 3.02
2200 2583 0.249120 CATCACCTAGCCACGGTTGA 59.751 55.000 0.00 0.00 30.82 3.18
2201 2584 0.036388 ACATCACCTAGCCACGGTTG 60.036 55.000 0.00 0.00 30.82 3.77
2202 2585 0.036388 CACATCACCTAGCCACGGTT 60.036 55.000 0.00 0.00 30.82 4.44
2203 2586 1.596934 CACATCACCTAGCCACGGT 59.403 57.895 0.00 0.00 34.38 4.83
2204 2587 1.815421 GCACATCACCTAGCCACGG 60.815 63.158 0.00 0.00 0.00 4.94
2205 2588 1.079197 TGCACATCACCTAGCCACG 60.079 57.895 0.00 0.00 0.00 4.94
2206 2589 0.321564 TGTGCACATCACCTAGCCAC 60.322 55.000 17.42 0.00 45.03 5.01
2207 2590 0.321564 GTGTGCACATCACCTAGCCA 60.322 55.000 24.69 0.00 45.03 4.75
2208 2591 0.321564 TGTGTGCACATCACCTAGCC 60.322 55.000 24.69 7.10 45.03 3.93
2209 2592 3.231734 TGTGTGCACATCACCTAGC 57.768 52.632 24.69 7.88 45.03 3.42
2218 2601 2.482864 CTGTACAGTCATGTGTGCACA 58.517 47.619 17.42 17.42 46.44 4.57
2219 2602 1.800586 CCTGTACAGTCATGTGTGCAC 59.199 52.381 21.18 10.75 38.02 4.57
2220 2603 1.416030 ACCTGTACAGTCATGTGTGCA 59.584 47.619 21.18 6.97 40.28 4.57
2221 2604 2.069273 GACCTGTACAGTCATGTGTGC 58.931 52.381 21.18 0.00 40.79 4.57
2222 2605 3.385193 TGACCTGTACAGTCATGTGTG 57.615 47.619 21.18 6.08 40.79 3.82
2223 2606 4.415881 TTTGACCTGTACAGTCATGTGT 57.584 40.909 21.18 10.68 40.79 3.72
2224 2607 5.947228 AATTTGACCTGTACAGTCATGTG 57.053 39.130 21.18 7.50 40.79 3.21
2225 2608 7.500892 TGTTAAATTTGACCTGTACAGTCATGT 59.499 33.333 21.18 11.76 43.76 3.21
2226 2609 7.870826 TGTTAAATTTGACCTGTACAGTCATG 58.129 34.615 21.18 8.57 0.00 3.07
2227 2610 8.458573 TTGTTAAATTTGACCTGTACAGTCAT 57.541 30.769 21.18 11.59 0.00 3.06
2228 2611 7.867305 TTGTTAAATTTGACCTGTACAGTCA 57.133 32.000 21.18 19.53 0.00 3.41
2229 2612 9.016623 GTTTTGTTAAATTTGACCTGTACAGTC 57.983 33.333 21.18 17.46 0.00 3.51
2230 2613 7.698970 CGTTTTGTTAAATTTGACCTGTACAGT 59.301 33.333 21.18 9.64 0.00 3.55
2231 2614 7.305763 GCGTTTTGTTAAATTTGACCTGTACAG 60.306 37.037 16.34 16.34 0.00 2.74
2232 2615 6.472808 GCGTTTTGTTAAATTTGACCTGTACA 59.527 34.615 10.29 0.00 0.00 2.90
2233 2616 6.344390 CGCGTTTTGTTAAATTTGACCTGTAC 60.344 38.462 10.29 3.55 0.00 2.90
2234 2617 5.681982 CGCGTTTTGTTAAATTTGACCTGTA 59.318 36.000 10.29 0.00 0.00 2.74
2235 2618 4.501198 CGCGTTTTGTTAAATTTGACCTGT 59.499 37.500 10.29 0.00 0.00 4.00
2236 2619 4.605135 GCGCGTTTTGTTAAATTTGACCTG 60.605 41.667 8.43 0.00 0.00 4.00
2237 2620 3.487942 GCGCGTTTTGTTAAATTTGACCT 59.512 39.130 8.43 0.00 0.00 3.85
2238 2621 3.487942 AGCGCGTTTTGTTAAATTTGACC 59.512 39.130 8.43 0.00 0.00 4.02
2239 2622 4.685824 AGCGCGTTTTGTTAAATTTGAC 57.314 36.364 8.43 6.16 0.00 3.18
2240 2623 5.749620 TCTAGCGCGTTTTGTTAAATTTGA 58.250 33.333 8.43 0.00 0.00 2.69
2241 2624 6.358558 TCTTCTAGCGCGTTTTGTTAAATTTG 59.641 34.615 8.43 0.00 0.00 2.32
2242 2625 6.432107 TCTTCTAGCGCGTTTTGTTAAATTT 58.568 32.000 8.43 0.00 0.00 1.82
2243 2626 5.992729 TCTTCTAGCGCGTTTTGTTAAATT 58.007 33.333 8.43 0.00 0.00 1.82
2244 2627 5.600908 TCTTCTAGCGCGTTTTGTTAAAT 57.399 34.783 8.43 0.00 0.00 1.40
2245 2628 5.406767 TTCTTCTAGCGCGTTTTGTTAAA 57.593 34.783 8.43 0.00 0.00 1.52
2246 2629 5.406767 TTTCTTCTAGCGCGTTTTGTTAA 57.593 34.783 8.43 0.00 0.00 2.01
2247 2630 4.084223 CCTTTCTTCTAGCGCGTTTTGTTA 60.084 41.667 8.43 0.00 0.00 2.41
2248 2631 3.303791 CCTTTCTTCTAGCGCGTTTTGTT 60.304 43.478 8.43 0.00 0.00 2.83
2249 2632 2.223377 CCTTTCTTCTAGCGCGTTTTGT 59.777 45.455 8.43 0.00 0.00 2.83
2250 2633 2.839474 CCTTTCTTCTAGCGCGTTTTG 58.161 47.619 8.43 0.00 0.00 2.44
2251 2634 1.197036 GCCTTTCTTCTAGCGCGTTTT 59.803 47.619 8.43 0.00 0.00 2.43
2252 2635 0.796927 GCCTTTCTTCTAGCGCGTTT 59.203 50.000 8.43 0.00 0.00 3.60
2253 2636 0.320421 TGCCTTTCTTCTAGCGCGTT 60.320 50.000 8.43 3.54 0.00 4.84
2254 2637 0.320421 TTGCCTTTCTTCTAGCGCGT 60.320 50.000 8.43 0.00 0.00 6.01
2255 2638 0.796312 TTTGCCTTTCTTCTAGCGCG 59.204 50.000 0.00 0.00 0.00 6.86
2256 2639 4.035675 ACATATTTGCCTTTCTTCTAGCGC 59.964 41.667 0.00 0.00 0.00 5.92
2257 2640 5.504665 CCACATATTTGCCTTTCTTCTAGCG 60.505 44.000 0.00 0.00 0.00 4.26
2258 2641 5.590259 TCCACATATTTGCCTTTCTTCTAGC 59.410 40.000 0.00 0.00 0.00 3.42
2259 2642 7.630242 TTCCACATATTTGCCTTTCTTCTAG 57.370 36.000 0.00 0.00 0.00 2.43
2260 2643 8.415950 TTTTCCACATATTTGCCTTTCTTCTA 57.584 30.769 0.00 0.00 0.00 2.10
2261 2644 6.916360 TTTCCACATATTTGCCTTTCTTCT 57.084 33.333 0.00 0.00 0.00 2.85
2262 2645 7.961325 TTTTTCCACATATTTGCCTTTCTTC 57.039 32.000 0.00 0.00 0.00 2.87
2283 2666 3.642848 ACACAGGAGTCCAATGCATTTTT 59.357 39.130 9.83 0.00 0.00 1.94
2284 2667 3.006110 CACACAGGAGTCCAATGCATTTT 59.994 43.478 9.83 0.00 0.00 1.82
2285 2668 2.559668 CACACAGGAGTCCAATGCATTT 59.440 45.455 9.83 0.00 0.00 2.32
2363 2804 8.928733 CACAGTTTGATATCCCAAAATTTTGAG 58.071 33.333 28.44 18.07 40.55 3.02
2364 2805 8.428063 ACACAGTTTGATATCCCAAAATTTTGA 58.572 29.630 28.44 12.81 40.55 2.69
2365 2806 8.606040 ACACAGTTTGATATCCCAAAATTTTG 57.394 30.769 21.65 21.65 37.72 2.44
2369 2810 6.951198 TGGTACACAGTTTGATATCCCAAAAT 59.049 34.615 0.00 0.00 37.72 1.82
2405 2846 9.695526 GCATTATGCTACCAAAAATGATCATTA 57.304 29.630 21.00 3.89 40.96 1.90
2419 2860 2.472695 TCATCCCGCATTATGCTACC 57.527 50.000 15.54 0.00 42.25 3.18
2420 2861 6.683974 AATTATCATCCCGCATTATGCTAC 57.316 37.500 15.54 0.00 42.25 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.