Multiple sequence alignment - TraesCS7A01G439100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G439100 chr7A 100.000 9978 0 0 1 9978 634378169 634388146 0.000000e+00 18426.0
1 TraesCS7A01G439100 chr7A 84.874 119 14 4 287 404 290618553 290618438 6.330000e-22 117.0
2 TraesCS7A01G439100 chr7A 97.674 43 1 0 8314 8356 26030854 26030896 3.870000e-09 75.0
3 TraesCS7A01G439100 chr7B 95.924 6452 184 23 1870 8290 592504392 592510795 0.000000e+00 10384.0
4 TraesCS7A01G439100 chr7B 86.466 1559 90 48 8512 9978 592510825 592512354 0.000000e+00 1598.0
5 TraesCS7A01G439100 chr7B 92.898 873 46 6 1005 1862 592502902 592503773 0.000000e+00 1254.0
6 TraesCS7A01G439100 chr7B 87.943 987 83 19 29 1001 592501545 592502509 0.000000e+00 1131.0
7 TraesCS7A01G439100 chr7B 84.806 645 73 16 192 832 592497477 592498100 8.510000e-175 625.0
8 TraesCS7A01G439100 chr7B 98.507 134 2 0 8386 8519 254383050 254382917 4.660000e-58 237.0
9 TraesCS7A01G439100 chr7B 92.216 167 11 2 446 611 588861682 588861847 1.680000e-57 235.0
10 TraesCS7A01G439100 chr7B 95.172 145 7 0 8374 8518 311539761 311539617 7.800000e-56 230.0
11 TraesCS7A01G439100 chr7B 100.000 39 0 0 1848 1886 592503995 592504033 1.390000e-08 73.1
12 TraesCS7A01G439100 chr7D 94.707 3476 122 20 761 4205 548885250 548888694 0.000000e+00 5343.0
13 TraesCS7A01G439100 chr7D 94.258 3483 112 38 4949 8385 548889737 548893177 0.000000e+00 5243.0
14 TraesCS7A01G439100 chr7D 92.895 1492 59 23 8511 9978 548893178 548894646 0.000000e+00 2124.0
15 TraesCS7A01G439100 chr7D 94.452 757 27 5 4201 4957 548888720 548889461 0.000000e+00 1151.0
16 TraesCS7A01G439100 chr7D 91.477 176 12 3 445 619 213380244 213380417 1.300000e-58 239.0
17 TraesCS7A01G439100 chr7D 84.772 197 27 3 2 197 548872421 548872615 2.840000e-45 195.0
18 TraesCS7A01G439100 chr7D 90.164 122 9 3 653 772 548883278 548883398 1.340000e-33 156.0
19 TraesCS7A01G439100 chr5A 79.831 590 102 10 2082 2662 445253629 445254210 2.010000e-111 414.0
20 TraesCS7A01G439100 chr5A 79.258 593 106 10 2079 2662 445256795 445257379 2.020000e-106 398.0
21 TraesCS7A01G439100 chr5A 85.517 290 36 2 1228 1517 445250313 445250596 2.110000e-76 298.0
22 TraesCS7A01G439100 chr5A 92.135 178 10 4 446 622 206730852 206731026 2.150000e-61 248.0
23 TraesCS7A01G439100 chr5A 89.305 187 18 1 2841 3025 445254689 445254875 6.030000e-57 233.0
24 TraesCS7A01G439100 chr5A 90.000 180 14 4 446 624 555280933 555280757 7.800000e-56 230.0
25 TraesCS7A01G439100 chr5A 94.595 148 7 1 8383 8529 46616184 46616331 2.800000e-55 228.0
26 TraesCS7A01G439100 chr5A 85.714 217 28 3 3749 3964 445259436 445259650 1.010000e-54 226.0
27 TraesCS7A01G439100 chr5A 87.634 186 21 1 2841 3024 445257857 445258042 2.180000e-51 215.0
28 TraesCS7A01G439100 chr5A 85.897 78 8 2 8282 8356 490326074 490326151 8.310000e-11 80.5
29 TraesCS7A01G439100 chr5A 85.897 78 8 2 8282 8356 490416104 490416181 8.310000e-11 80.5
30 TraesCS7A01G439100 chr5B 79.153 590 104 15 2084 2662 405709242 405709823 3.380000e-104 390.0
31 TraesCS7A01G439100 chr5B 87.762 286 30 3 4341 4622 405712273 405712557 7.470000e-86 329.0
32 TraesCS7A01G439100 chr5B 81.612 397 61 6 7570 7960 405717047 405717437 1.620000e-82 318.0
33 TraesCS7A01G439100 chr5B 86.842 266 31 2 1252 1517 405700838 405701099 2.730000e-75 294.0
34 TraesCS7A01G439100 chr5B 94.118 170 8 2 446 614 101540499 101540331 3.580000e-64 257.0
35 TraesCS7A01G439100 chr5B 91.758 182 9 6 434 610 607474827 607474647 2.150000e-61 248.0
36 TraesCS7A01G439100 chr5B 86.636 217 29 0 3490 3706 405711410 405711626 3.600000e-59 241.0
37 TraesCS7A01G439100 chr5B 95.833 144 5 1 8387 8530 65189468 65189326 2.170000e-56 231.0
38 TraesCS7A01G439100 chr5B 89.385 179 15 4 446 623 497454799 497454974 1.300000e-53 222.0
39 TraesCS7A01G439100 chr5B 86.170 188 24 2 3768 3955 405711735 405711920 1.700000e-47 202.0
40 TraesCS7A01G439100 chr5D 83.879 397 56 4 7570 7960 345935031 345934637 1.220000e-98 372.0
41 TraesCS7A01G439100 chr5D 88.346 266 28 1 1252 1517 345943304 345943042 5.820000e-82 316.0
42 TraesCS7A01G439100 chr5D 93.143 175 9 3 445 618 245718440 245718268 4.630000e-63 254.0
43 TraesCS7A01G439100 chr4A 93.567 171 9 2 446 615 362068075 362067906 4.630000e-63 254.0
44 TraesCS7A01G439100 chr4A 93.878 49 2 1 7958 8006 246711252 246711299 1.390000e-08 73.1
45 TraesCS7A01G439100 chr1D 93.103 174 9 3 446 617 39871979 39871807 1.660000e-62 252.0
46 TraesCS7A01G439100 chr1D 95.455 44 2 0 8313 8356 298568598 298568641 5.000000e-08 71.3
47 TraesCS7A01G439100 chr1D 95.455 44 2 0 8313 8356 350947648 350947605 5.000000e-08 71.3
48 TraesCS7A01G439100 chr1A 90.426 188 12 6 430 614 34971261 34971445 1.000000e-59 243.0
49 TraesCS7A01G439100 chr1A 81.290 155 18 10 253 401 555641260 555641111 2.280000e-21 115.0
50 TraesCS7A01G439100 chr2B 99.237 131 1 0 8387 8517 517437009 517436879 4.660000e-58 237.0
51 TraesCS7A01G439100 chr2B 98.507 134 1 1 8387 8519 763632602 763632469 1.680000e-57 235.0
52 TraesCS7A01G439100 chr2B 90.857 175 12 4 446 619 379712628 379712799 2.170000e-56 231.0
53 TraesCS7A01G439100 chr2B 97.059 136 4 0 8386 8521 783655559 783655424 7.800000e-56 230.0
54 TraesCS7A01G439100 chr2B 81.879 149 17 10 255 402 568278253 568278392 6.330000e-22 117.0
55 TraesCS7A01G439100 chr2B 81.046 153 19 8 251 397 18976950 18976802 8.190000e-21 113.0
56 TraesCS7A01G439100 chr2B 93.878 49 3 0 7956 8004 571145584 571145632 3.870000e-09 75.0
57 TraesCS7A01G439100 chr2B 93.750 48 2 1 7964 8011 136176060 136176106 5.000000e-08 71.3
58 TraesCS7A01G439100 chrUn 97.101 138 4 0 8383 8520 322720540 322720403 6.030000e-57 233.0
59 TraesCS7A01G439100 chrUn 95.205 146 6 1 8384 8529 23715010 23715154 7.800000e-56 230.0
60 TraesCS7A01G439100 chr6B 89.130 184 15 5 447 626 405863362 405863544 3.630000e-54 224.0
61 TraesCS7A01G439100 chr6B 84.932 73 8 1 8282 8351 529172732 529172804 5.000000e-08 71.3
62 TraesCS7A01G439100 chr3B 88.360 189 18 4 445 632 380685422 380685237 3.630000e-54 224.0
63 TraesCS7A01G439100 chr3B 97.727 44 1 0 7964 8007 583374113 583374070 1.070000e-09 76.8
64 TraesCS7A01G439100 chr3B 94.000 50 2 1 7961 8010 686338131 686338179 3.870000e-09 75.0
65 TraesCS7A01G439100 chr6A 82.993 147 15 8 255 395 184388177 184388319 3.780000e-24 124.0
66 TraesCS7A01G439100 chr6A 85.124 121 14 4 284 402 99403062 99403180 4.900000e-23 121.0
67 TraesCS7A01G439100 chr3A 82.270 141 15 8 258 392 568671530 568671394 8.190000e-21 113.0
68 TraesCS7A01G439100 chr4D 93.878 49 2 1 7958 8006 139045063 139045016 1.390000e-08 73.1
69 TraesCS7A01G439100 chr4D 91.837 49 3 1 8313 8361 10243365 10243412 6.470000e-07 67.6
70 TraesCS7A01G439100 chr2A 93.750 48 2 1 7964 8011 84959114 84959160 5.000000e-08 71.3
71 TraesCS7A01G439100 chr1B 95.455 44 2 0 8313 8356 401618994 401619037 5.000000e-08 71.3
72 TraesCS7A01G439100 chr6D 87.273 55 6 1 8313 8367 24823380 24823433 3.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G439100 chr7A 634378169 634388146 9977 False 18426.000000 18426 100.000000 1 9978 1 chr7A.!!$F2 9977
1 TraesCS7A01G439100 chr7B 592497477 592512354 14877 False 2510.850000 10384 91.339500 29 9978 6 chr7B.!!$F2 9949
2 TraesCS7A01G439100 chr7D 548883278 548894646 11368 False 2803.400000 5343 93.295200 653 9978 5 chr7D.!!$F3 9325
3 TraesCS7A01G439100 chr5A 445250313 445259650 9337 False 297.333333 414 84.543167 1228 3964 6 chr5A.!!$F5 2736
4 TraesCS7A01G439100 chr5B 405709242 405712557 3315 False 290.500000 390 84.930250 2084 4622 4 chr5B.!!$F4 2538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 4319 0.113776 AGTAGTCCCTCCGTTCACCA 59.886 55.000 0.0 0.0 0.00 4.17 F
1229 7547 0.467106 CACCACCATCACCACCACAA 60.467 55.000 0.0 0.0 0.00 3.33 F
1926 8871 0.593128 GCAGACCAACGCAGAAACAT 59.407 50.000 0.0 0.0 0.00 2.71 F
2177 11729 1.198637 GCTTGTCTGTGGAATGCTCAC 59.801 52.381 0.0 0.0 35.82 3.51 F
3260 16459 1.224075 CTGCATAGCCATCTTGACGG 58.776 55.000 0.0 0.0 0.00 4.79 F
4477 18354 0.890542 TGTGCAAAGCAATCGAGCCT 60.891 50.000 0.0 0.0 41.47 4.58 F
5126 19291 1.065109 CGAGTCCACACGACACACA 59.935 57.895 0.0 0.0 44.66 3.72 F
5840 20023 4.293494 TCATGCTCTCTAGAATTGGTCCT 58.707 43.478 0.0 0.0 0.00 3.85 F
6332 20515 4.686554 GCATCTATCGGTTCTGTGGAATAC 59.313 45.833 0.0 0.0 33.71 1.89 F
7299 21489 3.769844 TCTACTCAATTTCGCCTCCTTCT 59.230 43.478 0.0 0.0 0.00 2.85 F
8403 22624 0.997363 TCTACTCCCTCCGTCCAGAA 59.003 55.000 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 7932 1.210155 GAAGTCACAACGGCATGGC 59.790 57.895 9.69 9.69 0.00 4.40 R
3040 16099 0.038526 TGGAAACGGTCTCTTCGCTC 60.039 55.000 0.00 0.00 0.00 5.03 R
3502 17243 3.077359 GTTGAGTGTTGAATCCTCCCAG 58.923 50.000 0.00 0.00 0.00 4.45 R
3774 17594 4.319766 CCAGTGCATCAGTTCAGTACAAAC 60.320 45.833 0.00 0.00 0.00 2.93 R
4875 18755 2.286833 CGACGTCAAACCAGACACAATT 59.713 45.455 17.16 0.00 38.43 2.32 R
5632 19800 2.282462 CAACCCTGCCTGTCCACC 60.282 66.667 0.00 0.00 0.00 4.61 R
7098 21283 3.644966 TTGTTCAACTTGTCCTCTGGT 57.355 42.857 0.00 0.00 0.00 4.00 R
7290 21480 0.524862 CATGCAACACAGAAGGAGGC 59.475 55.000 0.00 0.00 0.00 4.70 R
7515 21705 1.114627 CTTCCCTTGGGCCAAATAGC 58.885 55.000 21.28 0.00 0.00 2.97 R
8703 22943 0.385223 GAAAGCACAGCTGACTTGCG 60.385 55.000 23.35 2.27 39.62 4.85 R
9542 23838 1.090052 CCCCGAGCATTTTCGAGGTC 61.090 60.000 0.00 0.00 43.03 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.360370 GCATACTCTTTACCCCAGATATCA 57.640 41.667 5.32 0.00 0.00 2.15
24 25 6.769512 GCATACTCTTTACCCCAGATATCAA 58.230 40.000 5.32 0.00 0.00 2.57
26 27 7.256332 GCATACTCTTTACCCCAGATATCAAGA 60.256 40.741 5.32 2.71 0.00 3.02
27 28 6.739331 ACTCTTTACCCCAGATATCAAGAG 57.261 41.667 18.28 18.28 40.98 2.85
28 29 6.206042 ACTCTTTACCCCAGATATCAAGAGT 58.794 40.000 19.21 19.21 42.56 3.24
29 30 7.363031 ACTCTTTACCCCAGATATCAAGAGTA 58.637 38.462 21.69 9.77 44.48 2.59
31 32 9.535170 CTCTTTACCCCAGATATCAAGAGTATA 57.465 37.037 14.29 3.73 33.87 1.47
121 4162 8.883731 AGACAAAAATAATGGATGTAGAAGACG 58.116 33.333 0.00 0.00 0.00 4.18
122 4163 8.786826 ACAAAAATAATGGATGTAGAAGACGA 57.213 30.769 0.00 0.00 0.00 4.20
140 4181 1.134699 CGAAAGAGAGGCTGCCATACA 60.135 52.381 22.65 0.00 0.00 2.29
161 4202 9.401873 CATACAATTACATGTGCAATAGAATGG 57.598 33.333 9.11 0.00 34.75 3.16
165 4206 9.836076 CAATTACATGTGCAATAGAATGGATAG 57.164 33.333 9.11 0.00 0.00 2.08
220 4268 1.966451 GTGCGTCAAGGGGTGGAAG 60.966 63.158 0.00 0.00 0.00 3.46
222 4270 1.122632 TGCGTCAAGGGGTGGAAGTA 61.123 55.000 0.00 0.00 0.00 2.24
271 4319 0.113776 AGTAGTCCCTCCGTTCACCA 59.886 55.000 0.00 0.00 0.00 4.17
283 4331 5.049405 CCTCCGTTCACCAAATATAAGATGC 60.049 44.000 0.00 0.00 0.00 3.91
345 4396 9.326339 GTTCGTTTATTCACTTATTTTGAGTCC 57.674 33.333 0.00 0.00 0.00 3.85
354 4405 9.491675 TTCACTTATTTTGAGTCCGTATGTTAA 57.508 29.630 0.00 0.00 0.00 2.01
359 4410 6.730960 TTTTGAGTCCGTATGTTAATCCAC 57.269 37.500 0.00 0.00 0.00 4.02
402 4453 8.607459 CATCTTATATTTATGAACGGATGGAGC 58.393 37.037 0.00 0.00 0.00 4.70
406 4457 4.746535 TTTATGAACGGATGGAGCAGTA 57.253 40.909 0.00 0.00 0.00 2.74
419 4470 2.548480 GGAGCAGTAGTTTTTCACGCTT 59.452 45.455 0.00 0.00 0.00 4.68
424 4475 4.629065 CAGTAGTTTTTCACGCTTCGATC 58.371 43.478 0.00 0.00 0.00 3.69
425 4476 3.678548 AGTAGTTTTTCACGCTTCGATCC 59.321 43.478 0.00 0.00 0.00 3.36
441 4492 3.116300 CGATCCCTTGACATGAACTACG 58.884 50.000 0.00 0.00 0.00 3.51
442 4493 3.458189 GATCCCTTGACATGAACTACGG 58.542 50.000 0.00 0.00 0.00 4.02
443 4494 2.531771 TCCCTTGACATGAACTACGGA 58.468 47.619 0.00 0.00 0.00 4.69
444 4495 2.496070 TCCCTTGACATGAACTACGGAG 59.504 50.000 0.00 0.00 0.00 4.63
446 4497 3.446161 CCCTTGACATGAACTACGGAGTA 59.554 47.826 0.00 0.00 45.11 2.59
447 4498 4.421948 CCTTGACATGAACTACGGAGTAC 58.578 47.826 0.00 0.00 45.11 2.73
448 4499 4.158025 CCTTGACATGAACTACGGAGTACT 59.842 45.833 0.00 0.00 45.11 2.73
467 4518 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
468 4519 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
470 4521 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
473 4524 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
476 4527 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
542 4593 8.677148 ACACATTTTAGAGTGTACATTCACTT 57.323 30.769 19.24 2.90 46.32 3.16
553 4604 7.581476 AGTGTACATTCACTTATTTTGTTCCG 58.419 34.615 0.00 0.00 44.92 4.30
563 4614 8.089597 TCACTTATTTTGTTCCGTATGTAGTCA 58.910 33.333 0.00 0.00 0.00 3.41
564 4615 8.166706 CACTTATTTTGTTCCGTATGTAGTCAC 58.833 37.037 0.00 0.00 0.00 3.67
566 4617 8.836268 TTATTTTGTTCCGTATGTAGTCACTT 57.164 30.769 0.00 0.00 0.00 3.16
567 4618 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
573 4624 6.032956 TCCGTATGTAGTCACTTGTTGAAT 57.967 37.500 0.00 0.00 35.39 2.57
575 4626 6.932400 TCCGTATGTAGTCACTTGTTGAATTT 59.068 34.615 0.00 0.00 35.39 1.82
585 4636 9.396022 AGTCACTTGTTGAATTTTCTAGAAAGA 57.604 29.630 17.05 9.62 35.39 2.52
587 4638 9.173021 TCACTTGTTGAATTTTCTAGAAAGACA 57.827 29.630 17.05 14.81 0.00 3.41
588 4639 9.787532 CACTTGTTGAATTTTCTAGAAAGACAA 57.212 29.630 17.05 18.72 0.00 3.18
603 4654 7.625828 AGAAAGACAAATATTTAGGAACGGG 57.374 36.000 0.00 0.00 0.00 5.28
620 4672 1.760613 CGGGGGAGTAGTTGCTTATGA 59.239 52.381 0.00 0.00 0.00 2.15
628 4680 7.068716 GGGGAGTAGTTGCTTATGAATGAATTT 59.931 37.037 0.00 0.00 0.00 1.82
630 4682 8.677300 GGAGTAGTTGCTTATGAATGAATTTGA 58.323 33.333 0.00 0.00 0.00 2.69
635 4687 8.742777 AGTTGCTTATGAATGAATTTGAGCTAA 58.257 29.630 0.00 0.00 0.00 3.09
652 4704 4.142038 AGCTAAACATTTTTGTCGAGGGT 58.858 39.130 0.00 0.00 0.00 4.34
871 6788 4.270153 TGGACCAGCCCACCTCCT 62.270 66.667 0.00 0.00 34.97 3.69
872 6789 3.403558 GGACCAGCCCACCTCCTC 61.404 72.222 0.00 0.00 0.00 3.71
873 6790 3.403558 GACCAGCCCACCTCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
1144 7459 4.914420 CGTCGCTCTGCCTAGCCG 62.914 72.222 2.11 0.00 39.43 5.52
1149 7464 3.150335 CTCTGCCTAGCCGCCAGA 61.150 66.667 0.00 0.00 0.00 3.86
1229 7547 0.467106 CACCACCATCACCACCACAA 60.467 55.000 0.00 0.00 0.00 3.33
1422 7752 2.042843 TCCCTCGGCCTTCTCCTC 60.043 66.667 0.00 0.00 0.00 3.71
1533 7863 1.103803 TAAGATCCGCTGACGCTTCT 58.896 50.000 0.00 0.00 38.22 2.85
1535 7865 1.941734 GATCCGCTGACGCTTCTCG 60.942 63.158 0.00 0.00 45.38 4.04
1547 7877 2.097791 ACGCTTCTCGGCTCTTAGTTAG 59.902 50.000 0.00 0.00 43.86 2.34
1550 7880 4.201891 CGCTTCTCGGCTCTTAGTTAGTTA 60.202 45.833 0.00 0.00 33.78 2.24
1551 7881 5.275494 GCTTCTCGGCTCTTAGTTAGTTAG 58.725 45.833 0.00 0.00 0.00 2.34
1552 7882 5.733937 GCTTCTCGGCTCTTAGTTAGTTAGG 60.734 48.000 0.00 0.00 0.00 2.69
1553 7883 5.108187 TCTCGGCTCTTAGTTAGTTAGGA 57.892 43.478 0.00 0.00 0.00 2.94
1564 7897 9.750783 TCTTAGTTAGTTAGGAAGAGTACATGT 57.249 33.333 2.69 2.69 0.00 3.21
1567 7900 8.418597 AGTTAGTTAGGAAGAGTACATGTGAA 57.581 34.615 9.11 0.00 0.00 3.18
1573 7906 9.654663 GTTAGGAAGAGTACATGTGAATAGTTT 57.345 33.333 9.11 0.00 0.00 2.66
1767 8100 8.924511 ATGTGATACCATTATGGAACCTTAAG 57.075 34.615 19.23 0.00 40.96 1.85
1834 8167 3.462021 ACTTCTGAACAGCTGAGTTGAC 58.538 45.455 23.35 5.28 0.00 3.18
1846 8179 5.237127 CAGCTGAGTTGACAACTTTGATACA 59.763 40.000 21.42 12.50 43.03 2.29
1926 8871 0.593128 GCAGACCAACGCAGAAACAT 59.407 50.000 0.00 0.00 0.00 2.71
1929 8874 3.067106 CAGACCAACGCAGAAACATACT 58.933 45.455 0.00 0.00 0.00 2.12
1991 8936 4.713553 TCGATAATAATGCACACCATGGT 58.286 39.130 13.00 13.00 33.49 3.55
2072 11618 2.973224 CTGTTTGCGAAGAAAATCGGTG 59.027 45.455 0.00 0.00 42.93 4.94
2076 11622 3.034721 TGCGAAGAAAATCGGTGTAGT 57.965 42.857 0.00 0.00 42.93 2.73
2117 11665 1.483827 AGTGCTATGCTTGCTCTGCTA 59.516 47.619 0.00 0.00 33.73 3.49
2177 11729 1.198637 GCTTGTCTGTGGAATGCTCAC 59.801 52.381 0.00 0.00 35.82 3.51
2178 11730 2.497138 CTTGTCTGTGGAATGCTCACA 58.503 47.619 0.00 0.00 42.11 3.58
2207 11761 7.926018 ACATTTTTCCTGTTTTCATTGTAGGTC 59.074 33.333 0.00 0.00 0.00 3.85
2237 11791 4.442733 GCACTTGACGCTCTTGTAGATATC 59.557 45.833 0.00 0.00 0.00 1.63
2363 11917 5.916661 ACTTAGCCCATATCGGTACATAG 57.083 43.478 0.00 0.00 0.00 2.23
2414 11971 7.273381 CCATTTTAGCTCCTTTTTGTGTATTCG 59.727 37.037 0.00 0.00 0.00 3.34
2568 12125 3.624326 TCGGCACACTTTTCAAATCTG 57.376 42.857 0.00 0.00 0.00 2.90
2826 12715 8.397575 TGTAGATGCTATTTGTCTAGTCTAGG 57.602 38.462 7.05 0.00 0.00 3.02
3066 16125 3.113260 AGAGACCGTTTCCAAGTTCAG 57.887 47.619 0.00 0.00 0.00 3.02
3260 16459 1.224075 CTGCATAGCCATCTTGACGG 58.776 55.000 0.00 0.00 0.00 4.79
3302 16501 5.375773 TGACAGGAAACATCATTCTGTGAA 58.624 37.500 0.00 0.00 40.97 3.18
3409 16621 9.174166 TCCTTTTTCTCCTAACATAGCATTAAC 57.826 33.333 0.00 0.00 0.00 2.01
3502 17243 4.459337 CCTTTGTTCTAGGTGACCAAATCC 59.541 45.833 3.63 0.00 36.67 3.01
3774 17594 6.630444 AGCTTAGTATTGATGATTTGGCAG 57.370 37.500 0.00 0.00 0.00 4.85
4019 17844 3.981071 TCAGTTGGTATAAGCAGTGCT 57.019 42.857 13.14 13.14 42.56 4.40
4335 18200 4.220821 TCTTCTGGAGTGTGATAGTGGAAC 59.779 45.833 0.00 0.00 0.00 3.62
4477 18354 0.890542 TGTGCAAAGCAATCGAGCCT 60.891 50.000 0.00 0.00 41.47 4.58
4499 18376 1.391577 TCATGGACATTTGGATGCGG 58.608 50.000 0.00 0.00 36.72 5.69
4830 18710 7.040201 AGTGCTTTGATGAAAGAAATCTGCTAA 60.040 33.333 9.00 0.00 41.12 3.09
5126 19291 1.065109 CGAGTCCACACGACACACA 59.935 57.895 0.00 0.00 44.66 3.72
5288 19453 6.597562 TGGTGTAAACTTTATTGTCTCCTGT 58.402 36.000 0.00 0.00 0.00 4.00
5291 19456 7.095187 GGTGTAAACTTTATTGTCTCCTGTCAG 60.095 40.741 0.00 0.00 0.00 3.51
5838 20021 5.528043 TCTCATGCTCTCTAGAATTGGTC 57.472 43.478 0.00 0.00 0.00 4.02
5839 20022 4.343526 TCTCATGCTCTCTAGAATTGGTCC 59.656 45.833 0.00 0.00 0.00 4.46
5840 20023 4.293494 TCATGCTCTCTAGAATTGGTCCT 58.707 43.478 0.00 0.00 0.00 3.85
5841 20024 5.458595 TCATGCTCTCTAGAATTGGTCCTA 58.541 41.667 0.00 0.00 0.00 2.94
5842 20025 5.538053 TCATGCTCTCTAGAATTGGTCCTAG 59.462 44.000 0.00 0.00 35.02 3.02
5843 20026 4.873010 TGCTCTCTAGAATTGGTCCTAGT 58.127 43.478 0.00 0.00 35.20 2.57
5844 20027 4.890581 TGCTCTCTAGAATTGGTCCTAGTC 59.109 45.833 0.00 0.00 35.20 2.59
5845 20028 4.890581 GCTCTCTAGAATTGGTCCTAGTCA 59.109 45.833 3.66 0.00 35.20 3.41
5846 20029 5.538433 GCTCTCTAGAATTGGTCCTAGTCAT 59.462 44.000 3.66 0.00 35.20 3.06
5847 20030 6.041523 GCTCTCTAGAATTGGTCCTAGTCATT 59.958 42.308 3.66 0.00 35.20 2.57
5892 20075 8.289618 TCATAAATGAGAGTGGTTTTCGAAAAG 58.710 33.333 23.08 6.34 32.11 2.27
5960 20143 8.707938 TGCATAATTATATCATGAGAGGAACG 57.292 34.615 0.09 0.00 0.00 3.95
6025 20208 9.520204 GATGGTGTAGATCAAATTGGTTTAATG 57.480 33.333 0.00 0.00 0.00 1.90
6037 20220 9.656040 CAAATTGGTTTAATGATCTCATTTGGA 57.344 29.630 10.47 0.00 43.48 3.53
6081 20264 9.586435 AAGAAGTCCAAGTGTTTTATTGAAAAG 57.414 29.630 0.00 0.00 35.21 2.27
6144 20327 7.676004 TCATCGCATCCCTATTTACTCATTAA 58.324 34.615 0.00 0.00 0.00 1.40
6145 20328 8.321353 TCATCGCATCCCTATTTACTCATTAAT 58.679 33.333 0.00 0.00 0.00 1.40
6146 20329 8.950210 CATCGCATCCCTATTTACTCATTAATT 58.050 33.333 0.00 0.00 0.00 1.40
6147 20330 8.547967 TCGCATCCCTATTTACTCATTAATTC 57.452 34.615 0.00 0.00 0.00 2.17
6170 20353 8.995027 TTCATTATGCTATGGGTATGTTTCTT 57.005 30.769 0.00 0.00 0.00 2.52
6332 20515 4.686554 GCATCTATCGGTTCTGTGGAATAC 59.313 45.833 0.00 0.00 33.71 1.89
6601 20786 7.062722 GCTTGAGAATTGTTTTGGAATCTAAGC 59.937 37.037 0.00 0.00 0.00 3.09
7290 21480 6.128172 ACTGGATTGCTTTCTACTCAATTTCG 60.128 38.462 0.00 0.00 31.30 3.46
7299 21489 3.769844 TCTACTCAATTTCGCCTCCTTCT 59.230 43.478 0.00 0.00 0.00 2.85
7488 21678 7.062255 GCCCAACTTTTTCTCATAGAAATTTCG 59.938 37.037 12.42 0.00 43.06 3.46
7515 21705 3.615937 GCAGTCATATCACCATATGCTCG 59.384 47.826 0.00 0.00 41.27 5.03
7547 21737 4.263506 CCCAAGGGAAGTTACTTCTGATGT 60.264 45.833 22.26 1.65 40.07 3.06
7621 21811 5.278957 GGTTGGTGATGGTATAAATGATGCC 60.279 44.000 0.00 0.00 40.64 4.40
7762 21952 2.033236 CGCTAAAGCTCGTCAAACAACA 60.033 45.455 0.00 0.00 39.32 3.33
7845 22035 8.859090 TGGTTCTTACAATTTTGATGTTCATCT 58.141 29.630 12.94 0.00 32.27 2.90
7863 22053 5.376625 TCATCTTTACAGGTGAAGCAAAGT 58.623 37.500 0.00 0.00 37.20 2.66
7970 22160 6.096987 TCGTTCTTCCTTGCATAATACTCTCT 59.903 38.462 0.00 0.00 0.00 3.10
7973 22163 5.899547 TCTTCCTTGCATAATACTCTCTCCA 59.100 40.000 0.00 0.00 0.00 3.86
8023 22213 7.701445 AGTTCAAACTTATTGATGCATCTAGC 58.299 34.615 26.32 2.00 39.08 3.42
8049 22239 3.090210 TGATGACCACTTGCCAATGAT 57.910 42.857 0.00 0.00 0.00 2.45
8106 22296 9.457436 GAGTTGAAAGTATAGGGGTGAAAATAA 57.543 33.333 0.00 0.00 0.00 1.40
8192 22394 9.130661 TGAAGAAAATCAGTCAAGTTAATTCCA 57.869 29.630 0.00 0.00 0.00 3.53
8208 22410 7.285401 AGTTAATTCCAGCGGATAAATTGACAT 59.715 33.333 12.94 0.00 32.87 3.06
8209 22411 6.469782 AATTCCAGCGGATAAATTGACATT 57.530 33.333 0.00 0.00 0.00 2.71
8386 22607 9.807921 TTTAAACCAGATTTTCCAGAGTTATCT 57.192 29.630 0.00 0.00 35.63 1.98
8388 22609 8.794335 AAACCAGATTTTCCAGAGTTATCTAC 57.206 34.615 0.00 0.00 33.22 2.59
8389 22610 7.741554 ACCAGATTTTCCAGAGTTATCTACT 57.258 36.000 0.00 0.00 40.71 2.57
8399 22620 3.148412 GAGTTATCTACTCCCTCCGTCC 58.852 54.545 0.00 0.00 46.30 4.79
8400 22621 2.512896 AGTTATCTACTCCCTCCGTCCA 59.487 50.000 0.00 0.00 28.23 4.02
8401 22622 2.885894 GTTATCTACTCCCTCCGTCCAG 59.114 54.545 0.00 0.00 0.00 3.86
8402 22623 1.223501 ATCTACTCCCTCCGTCCAGA 58.776 55.000 0.00 0.00 0.00 3.86
8403 22624 0.997363 TCTACTCCCTCCGTCCAGAA 59.003 55.000 0.00 0.00 0.00 3.02
8404 22625 1.356738 TCTACTCCCTCCGTCCAGAAA 59.643 52.381 0.00 0.00 0.00 2.52
8405 22626 2.024273 TCTACTCCCTCCGTCCAGAAAT 60.024 50.000 0.00 0.00 0.00 2.17
8406 22627 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
8407 22628 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
8408 22629 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
8409 22630 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
8410 22631 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
8411 22632 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
8412 22633 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
8413 22634 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
8414 22635 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
8415 22636 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
8416 22637 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
8417 22638 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
8418 22639 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
8419 22640 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
8420 22641 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
8421 22642 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
8422 22643 8.514594 GTCCAGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
8423 22644 9.076781 TCCAGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
8424 22645 9.865321 CCAGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
8432 22653 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
8433 22654 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
8434 22655 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
8435 22656 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
8436 22657 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
8437 22658 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
8440 22661 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
8446 22667 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
8454 22675 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
8476 22697 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
8477 22698 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
8478 22699 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
8479 22700 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
8480 22701 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
8481 22702 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
8482 22703 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
8483 22704 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
8484 22705 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
8485 22706 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
8486 22707 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
8487 22708 6.043012 ACATCCCTTTTTGTCCATTTTGATGA 59.957 34.615 0.00 0.00 32.39 2.92
8488 22709 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
8489 22710 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
8490 22711 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
8491 22712 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
8492 22713 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
8493 22714 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
8494 22715 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
8495 22716 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
8496 22717 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
8497 22718 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
8498 22719 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
8499 22720 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
8500 22721 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
8501 22722 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
8502 22723 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
8503 22724 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
8504 22725 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
8505 22726 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
8506 22727 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
8507 22728 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
8508 22729 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
8509 22730 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
8510 22731 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
8531 22752 8.652290 AGGGAGTATATGTTAAACCTCTTGATC 58.348 37.037 0.00 0.00 0.00 2.92
8532 22753 8.429641 GGGAGTATATGTTAAACCTCTTGATCA 58.570 37.037 0.00 0.00 0.00 2.92
8533 22754 9.262358 GGAGTATATGTTAAACCTCTTGATCAC 57.738 37.037 0.00 0.00 0.00 3.06
8534 22755 9.817809 GAGTATATGTTAAACCTCTTGATCACA 57.182 33.333 0.00 0.00 0.00 3.58
8535 22756 9.823647 AGTATATGTTAAACCTCTTGATCACAG 57.176 33.333 0.00 0.00 0.00 3.66
8537 22758 4.072131 TGTTAAACCTCTTGATCACAGGC 58.928 43.478 16.85 4.37 0.00 4.85
8617 22840 5.047306 TGGGATGTGTTTAGTGTGAGTAGAG 60.047 44.000 0.00 0.00 0.00 2.43
8686 22926 9.740710 AAATTAGAAGTGGAGCTTATACAGTTT 57.259 29.630 0.00 0.00 37.59 2.66
8703 22943 5.963594 ACAGTTTAGAACTCGGGATTACTC 58.036 41.667 0.00 0.00 40.46 2.59
8712 22952 1.134367 TCGGGATTACTCGCAAGTCAG 59.866 52.381 0.00 0.00 40.15 3.51
8713 22953 1.291132 GGGATTACTCGCAAGTCAGC 58.709 55.000 0.00 0.00 36.92 4.26
8751 23004 0.738063 CCCGTAGCGTGTGCACATAA 60.738 55.000 24.69 6.05 46.23 1.90
8754 23007 2.861335 CCGTAGCGTGTGCACATAATTA 59.139 45.455 24.69 10.63 46.23 1.40
8758 23011 5.392297 CGTAGCGTGTGCACATAATTAATTG 59.608 40.000 24.69 4.26 46.23 2.32
8760 23013 5.094812 AGCGTGTGCACATAATTAATTGTG 58.905 37.500 24.69 19.82 46.23 3.33
8761 23014 4.856487 GCGTGTGCACATAATTAATTGTGT 59.144 37.500 24.69 20.99 44.01 3.72
8763 23016 6.524933 GCGTGTGCACATAATTAATTGTGTTA 59.475 34.615 24.69 14.77 44.01 2.41
8860 23120 1.480954 TCAATACGAGCTCTCAACCCC 59.519 52.381 12.85 0.00 0.00 4.95
8899 23159 2.159366 AGATGACATCCGACAACTCGTC 60.159 50.000 11.92 0.00 41.62 4.20
8943 23203 3.196901 TCGGCAAAGTTGAATAGCTCCTA 59.803 43.478 0.00 0.00 0.00 2.94
9010 23273 4.728608 GCGGCTGTTATCTTTGTAATTTCG 59.271 41.667 0.00 0.00 0.00 3.46
9021 23284 3.485947 TGTAATTTCGTTGCATGAGCC 57.514 42.857 0.00 0.00 41.13 4.70
9147 23420 1.678101 GTGCCAAGCATCCTGTAATCC 59.322 52.381 0.00 0.00 41.91 3.01
9163 23439 4.085876 CCAACTGTTGGCTGAGGG 57.914 61.111 25.21 1.53 45.17 4.30
9166 23442 1.402787 CAACTGTTGGCTGAGGGTTT 58.597 50.000 12.66 0.00 0.00 3.27
9187 23463 3.124921 GGTTCGGTGCATCGGGTG 61.125 66.667 21.08 0.00 0.00 4.61
9226 23502 3.516615 CCAAGAGAAGCTACTGTGTAGC 58.483 50.000 18.65 18.65 40.67 3.58
9235 23511 3.127203 AGCTACTGTGTAGCGAGTTACTG 59.873 47.826 19.70 0.00 44.73 2.74
9542 23838 4.771590 TGCAGGCAAAGTCTCAAATTAG 57.228 40.909 0.00 0.00 0.00 1.73
9645 23942 2.827423 CAGCAGATCCCCATCGCT 59.173 61.111 0.00 0.00 38.57 4.93
9661 23958 0.725686 CGCTGACCTGAAGCATCTTG 59.274 55.000 0.00 0.00 40.86 3.02
9717 24037 0.037882 CAGCCTGCGTGAGAAAGAGA 60.038 55.000 0.00 0.00 0.00 3.10
9720 24040 2.079925 GCCTGCGTGAGAAAGAGAAAT 58.920 47.619 0.00 0.00 0.00 2.17
9737 24057 3.746492 AGAAATGCTTCTTCGTGTACACC 59.254 43.478 20.11 4.91 38.89 4.16
9809 24129 2.622903 TAAATCCGTCCGCAGCCTCG 62.623 60.000 0.00 0.00 0.00 4.63
9824 24144 1.026718 CCTCGCCACATCTTCCCAAC 61.027 60.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.851876 ACTAGATATACTCTTGATATCTGGGGT 58.148 37.037 15.92 5.40 43.74 4.95
31 32 9.939802 CTAAACCGCCCTAATAAAATACTAGAT 57.060 33.333 0.00 0.00 0.00 1.98
32 33 8.927411 ACTAAACCGCCCTAATAAAATACTAGA 58.073 33.333 0.00 0.00 0.00 2.43
53 4094 9.638239 CCTATTGTTTTACACGGTACTACTAAA 57.362 33.333 0.00 0.00 0.00 1.85
97 4138 8.786826 TCGTCTTCTACATCCATTATTTTTGT 57.213 30.769 0.00 0.00 0.00 2.83
102 4143 8.696374 TCTCTTTCGTCTTCTACATCCATTATT 58.304 33.333 0.00 0.00 0.00 1.40
109 4150 4.097286 AGCCTCTCTTTCGTCTTCTACATC 59.903 45.833 0.00 0.00 0.00 3.06
111 4152 3.191581 CAGCCTCTCTTTCGTCTTCTACA 59.808 47.826 0.00 0.00 0.00 2.74
121 4162 2.698855 TGTATGGCAGCCTCTCTTTC 57.301 50.000 14.15 0.00 0.00 2.62
122 4163 3.659183 ATTGTATGGCAGCCTCTCTTT 57.341 42.857 14.15 0.00 0.00 2.52
140 4181 9.578576 ACTATCCATTCTATTGCACATGTAATT 57.421 29.630 0.00 0.00 32.67 1.40
165 4206 9.482627 CCTCTACTTCTGATTATGTATTGGAAC 57.517 37.037 0.00 0.00 0.00 3.62
214 4262 0.175989 CCTCGCCTCCTTACTTCCAC 59.824 60.000 0.00 0.00 0.00 4.02
220 4268 2.552031 GAAACATCCTCGCCTCCTTAC 58.448 52.381 0.00 0.00 0.00 2.34
222 4270 0.253327 GGAAACATCCTCGCCTCCTT 59.747 55.000 0.00 0.00 0.00 3.36
253 4301 0.971386 TTGGTGAACGGAGGGACTAC 59.029 55.000 0.00 0.00 41.55 2.73
254 4302 1.719529 TTTGGTGAACGGAGGGACTA 58.280 50.000 0.00 0.00 41.55 2.59
256 4304 2.773993 TATTTGGTGAACGGAGGGAC 57.226 50.000 0.00 0.00 0.00 4.46
340 4391 6.046593 TCAATGTGGATTAACATACGGACTC 58.953 40.000 0.00 0.00 39.89 3.36
376 4427 8.607459 GCTCCATCCGTTCATAAATATAAGATG 58.393 37.037 0.00 0.00 0.00 2.90
388 4439 2.111384 ACTACTGCTCCATCCGTTCAT 58.889 47.619 0.00 0.00 0.00 2.57
393 4444 3.125316 GTGAAAAACTACTGCTCCATCCG 59.875 47.826 0.00 0.00 0.00 4.18
395 4446 3.424962 GCGTGAAAAACTACTGCTCCATC 60.425 47.826 0.00 0.00 0.00 3.51
402 4453 4.434330 GGATCGAAGCGTGAAAAACTACTG 60.434 45.833 0.00 0.00 0.00 2.74
406 4457 1.804748 GGGATCGAAGCGTGAAAAACT 59.195 47.619 0.00 0.00 0.00 2.66
419 4470 3.181490 CGTAGTTCATGTCAAGGGATCGA 60.181 47.826 0.00 0.00 0.00 3.59
424 4475 2.233922 ACTCCGTAGTTCATGTCAAGGG 59.766 50.000 0.00 0.00 29.00 3.95
425 4476 3.594603 ACTCCGTAGTTCATGTCAAGG 57.405 47.619 0.00 0.00 29.00 3.61
442 4493 2.725221 TAGGAACGGAGGGAGTACTC 57.275 55.000 14.87 14.87 36.76 2.59
443 4494 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
444 4495 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
445 4496 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
446 4497 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
447 4498 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
448 4499 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
476 4527 7.276658 TGCGGTAGTCCATTTGAAATATCTAA 58.723 34.615 0.00 0.00 0.00 2.10
477 4528 6.822442 TGCGGTAGTCCATTTGAAATATCTA 58.178 36.000 0.00 0.00 0.00 1.98
482 4533 4.272504 CGTATGCGGTAGTCCATTTGAAAT 59.727 41.667 0.00 0.00 0.00 2.17
484 4535 3.191669 CGTATGCGGTAGTCCATTTGAA 58.808 45.455 0.00 0.00 0.00 2.69
485 4536 2.816689 CGTATGCGGTAGTCCATTTGA 58.183 47.619 0.00 0.00 0.00 2.69
498 4549 5.875930 TGTGTCTATATACATCCGTATGCG 58.124 41.667 0.00 0.00 38.79 4.73
499 4550 8.703604 AAATGTGTCTATATACATCCGTATGC 57.296 34.615 0.00 0.00 36.52 3.14
516 4567 8.311650 AGTGAATGTACACTCTAAAATGTGTC 57.688 34.615 5.83 0.00 46.36 3.67
534 4585 9.702726 CTACATACGGAACAAAATAAGTGAATG 57.297 33.333 0.00 0.00 0.00 2.67
540 4591 8.475331 AGTGACTACATACGGAACAAAATAAG 57.525 34.615 0.00 0.00 0.00 1.73
542 4593 7.874016 ACAAGTGACTACATACGGAACAAAATA 59.126 33.333 0.00 0.00 0.00 1.40
549 4600 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
580 4631 6.183360 CCCCCGTTCCTAAATATTTGTCTTTC 60.183 42.308 11.05 0.00 0.00 2.62
585 4636 4.228895 ACTCCCCCGTTCCTAAATATTTGT 59.771 41.667 11.05 0.00 0.00 2.83
587 4638 5.668991 ACTACTCCCCCGTTCCTAAATATTT 59.331 40.000 5.89 5.89 0.00 1.40
588 4639 5.222086 ACTACTCCCCCGTTCCTAAATATT 58.778 41.667 0.00 0.00 0.00 1.28
600 4651 1.760613 TCATAAGCAACTACTCCCCCG 59.239 52.381 0.00 0.00 0.00 5.73
603 4654 7.573968 AATTCATTCATAAGCAACTACTCCC 57.426 36.000 0.00 0.00 0.00 4.30
628 4680 4.215399 CCCTCGACAAAAATGTTTAGCTCA 59.785 41.667 0.00 0.00 0.00 4.26
630 4682 4.142038 ACCCTCGACAAAAATGTTTAGCT 58.858 39.130 0.00 0.00 0.00 3.32
635 4687 5.331876 TCAAAACCCTCGACAAAAATGTT 57.668 34.783 0.00 0.00 0.00 2.71
670 4722 7.273381 CGGTGCTGAAATTCGAAAAATTAAGAT 59.727 33.333 0.00 0.00 0.00 2.40
682 4734 2.030946 GGAGATTCGGTGCTGAAATTCG 59.969 50.000 0.00 0.00 0.00 3.34
1229 7547 4.820744 GCCCATGCCCGTGGTGAT 62.821 66.667 5.84 0.00 37.57 3.06
1533 7863 5.503927 TCTTCCTAACTAACTAAGAGCCGA 58.496 41.667 0.00 0.00 0.00 5.54
1535 7865 6.778834 ACTCTTCCTAACTAACTAAGAGCC 57.221 41.667 9.65 0.00 44.46 4.70
1547 7877 9.654663 AAACTATTCACATGTACTCTTCCTAAC 57.345 33.333 0.00 0.00 0.00 2.34
1550 7880 9.877178 CTTAAACTATTCACATGTACTCTTCCT 57.123 33.333 0.00 0.00 0.00 3.36
1551 7881 9.654663 ACTTAAACTATTCACATGTACTCTTCC 57.345 33.333 0.00 0.00 0.00 3.46
1599 7932 1.210155 GAAGTCACAACGGCATGGC 59.790 57.895 9.69 9.69 0.00 4.40
1767 8100 3.866651 TCTATCAGCTTGAACAAGAGCC 58.133 45.455 17.19 1.46 40.79 4.70
1834 8167 8.495949 CAAACCAGTACTACTGTATCAAAGTTG 58.504 37.037 14.00 4.26 44.50 3.16
1846 8179 2.428181 ACCCCCAAACCAGTACTACT 57.572 50.000 0.00 0.00 0.00 2.57
1967 8912 4.378770 CCATGGTGTGCATTATTATCGAGC 60.379 45.833 2.57 0.00 0.00 5.03
2072 11618 6.177610 TCCCTGTTCAATGGAATGTAACTAC 58.822 40.000 0.00 0.00 35.05 2.73
2076 11622 5.476599 CACTTCCCTGTTCAATGGAATGTAA 59.523 40.000 0.00 0.00 37.52 2.41
2177 11729 8.145316 ACAATGAAAACAGGAAAAATGTCATG 57.855 30.769 0.00 0.00 35.46 3.07
2178 11730 9.480053 CTACAATGAAAACAGGAAAAATGTCAT 57.520 29.630 0.00 0.00 0.00 3.06
2207 11761 1.624865 GAGCGTCAAGTGCTGCAGAG 61.625 60.000 20.43 0.82 44.18 3.35
2237 11791 8.084073 ACATGGATATTTATTTTTCCATCTGCG 58.916 33.333 0.00 0.00 45.06 5.18
2363 11917 6.258899 GGAGAGTTTCAAAGAGTGTCAAAAC 58.741 40.000 0.00 0.00 0.00 2.43
2414 11971 4.222114 CGACAAAAGAGAAAACCATCAGC 58.778 43.478 0.00 0.00 0.00 4.26
2568 12125 5.229423 TGCACAGGAACTTTTGCATAATTC 58.771 37.500 0.00 0.00 46.32 2.17
2826 12715 6.747280 CACAATGAGATAAAATTCCCAACGAC 59.253 38.462 0.00 0.00 0.00 4.34
3040 16099 0.038526 TGGAAACGGTCTCTTCGCTC 60.039 55.000 0.00 0.00 0.00 5.03
3066 16125 5.755330 TGAACAAAACGAGCAAAGAAAAC 57.245 34.783 0.00 0.00 0.00 2.43
3142 16202 8.454894 CAGTATAGCAGTACATACACATCCTAG 58.545 40.741 0.00 0.00 31.33 3.02
3260 16459 3.691609 GTCAGTCTGGAATGGTTTCATCC 59.308 47.826 0.00 0.00 33.23 3.51
3409 16621 5.455525 GCCAAATGTAATAAACTGCGCTAAG 59.544 40.000 9.73 0.00 0.00 2.18
3502 17243 3.077359 GTTGAGTGTTGAATCCTCCCAG 58.923 50.000 0.00 0.00 0.00 4.45
3760 17580 5.771469 CAGTACAAACTGCCAAATCATCAA 58.229 37.500 0.00 0.00 46.28 2.57
3774 17594 4.319766 CCAGTGCATCAGTTCAGTACAAAC 60.320 45.833 0.00 0.00 0.00 2.93
4477 18354 3.569277 CCGCATCCAAATGTCCATGAATA 59.431 43.478 0.00 0.00 35.18 1.75
4499 18376 3.434940 AGAAGGGTCAACACCATTACC 57.565 47.619 0.00 0.00 46.93 2.85
4871 18751 4.338118 ACGTCAAACCAGACACAATTGAAT 59.662 37.500 13.59 0.00 38.43 2.57
4872 18752 3.692101 ACGTCAAACCAGACACAATTGAA 59.308 39.130 13.59 0.00 38.43 2.69
4873 18753 3.275143 ACGTCAAACCAGACACAATTGA 58.725 40.909 13.59 0.00 38.43 2.57
4874 18754 3.617669 GACGTCAAACCAGACACAATTG 58.382 45.455 11.55 3.24 38.43 2.32
4875 18755 2.286833 CGACGTCAAACCAGACACAATT 59.713 45.455 17.16 0.00 38.43 2.32
5592 19760 5.105917 ACAATAATAACCCGCCAACAGAAAG 60.106 40.000 0.00 0.00 0.00 2.62
5632 19800 2.282462 CAACCCTGCCTGTCCACC 60.282 66.667 0.00 0.00 0.00 4.61
5838 20021 4.578516 TCACAACACCAAACAATGACTAGG 59.421 41.667 0.00 0.00 0.00 3.02
5839 20022 5.749596 TCACAACACCAAACAATGACTAG 57.250 39.130 0.00 0.00 0.00 2.57
5840 20023 5.067153 CCTTCACAACACCAAACAATGACTA 59.933 40.000 0.00 0.00 0.00 2.59
5841 20024 4.142182 CCTTCACAACACCAAACAATGACT 60.142 41.667 0.00 0.00 0.00 3.41
5842 20025 4.111916 CCTTCACAACACCAAACAATGAC 58.888 43.478 0.00 0.00 0.00 3.06
5843 20026 3.766591 ACCTTCACAACACCAAACAATGA 59.233 39.130 0.00 0.00 0.00 2.57
5844 20027 4.122143 ACCTTCACAACACCAAACAATG 57.878 40.909 0.00 0.00 0.00 2.82
5845 20028 4.221703 TGAACCTTCACAACACCAAACAAT 59.778 37.500 0.00 0.00 31.01 2.71
5846 20029 3.574396 TGAACCTTCACAACACCAAACAA 59.426 39.130 0.00 0.00 31.01 2.83
5847 20030 3.157881 TGAACCTTCACAACACCAAACA 58.842 40.909 0.00 0.00 31.01 2.83
5892 20075 2.689983 CCATCCAGCCAAATAACTCCAC 59.310 50.000 0.00 0.00 0.00 4.02
5960 20143 6.772716 TCATCTCATTATCCTGTTTTAAGGGC 59.227 38.462 0.00 0.00 37.96 5.19
6025 20208 5.587388 TGCCTTTTCATCCAAATGAGATC 57.413 39.130 0.00 0.00 42.72 2.75
6037 20220 4.104383 TCTTCCACTCTTGCCTTTTCAT 57.896 40.909 0.00 0.00 0.00 2.57
6063 20246 6.900568 TGGCACTTTTCAATAAAACACTTG 57.099 33.333 0.00 0.00 31.37 3.16
6144 20327 9.592196 AAGAAACATACCCATAGCATAATGAAT 57.408 29.630 0.00 0.00 0.00 2.57
6145 20328 8.849168 CAAGAAACATACCCATAGCATAATGAA 58.151 33.333 0.00 0.00 0.00 2.57
6146 20329 7.998383 ACAAGAAACATACCCATAGCATAATGA 59.002 33.333 0.00 0.00 0.00 2.57
6147 20330 8.169977 ACAAGAAACATACCCATAGCATAATG 57.830 34.615 0.00 0.00 0.00 1.90
6513 20697 4.782019 TGCTTACATGAACATCCCAAAC 57.218 40.909 0.00 0.00 0.00 2.93
6601 20786 6.094603 AGCTTAGATTGCAACAAGTAATCCAG 59.905 38.462 0.00 0.00 46.70 3.86
7098 21283 3.644966 TTGTTCAACTTGTCCTCTGGT 57.355 42.857 0.00 0.00 0.00 4.00
7203 21393 8.938801 ATAATGGAATAACATATGCAAGGTGA 57.061 30.769 1.58 0.00 0.00 4.02
7205 21395 7.882791 TCGATAATGGAATAACATATGCAAGGT 59.117 33.333 1.58 0.00 0.00 3.50
7207 21397 8.720562 TGTCGATAATGGAATAACATATGCAAG 58.279 33.333 1.58 0.00 0.00 4.01
7290 21480 0.524862 CATGCAACACAGAAGGAGGC 59.475 55.000 0.00 0.00 0.00 4.70
7299 21489 1.618487 TGATCAAGCCATGCAACACA 58.382 45.000 0.00 0.00 0.00 3.72
7410 21600 7.335924 GCACAATAAACAGAGTTTAGTATGGGA 59.664 37.037 9.45 0.00 0.00 4.37
7488 21678 2.042686 TGGTGATATGACTGCAAGCC 57.957 50.000 0.00 0.00 37.60 4.35
7515 21705 1.114627 CTTCCCTTGGGCCAAATAGC 58.885 55.000 21.28 0.00 0.00 2.97
7547 21737 8.902540 AAATGCGAAGGTACATAATGATTAGA 57.097 30.769 0.00 0.00 0.00 2.10
7566 21756 3.443681 ACCTCCACCTGAAAATAAATGCG 59.556 43.478 0.00 0.00 0.00 4.73
7762 21952 4.858850 TCACAAGAGGCATTACCAATGAT 58.141 39.130 3.11 0.00 43.14 2.45
7802 21992 6.791887 AGAACCAGCAATATTGTATCGATG 57.208 37.500 16.61 6.62 0.00 3.84
7837 22027 4.713553 TGCTTCACCTGTAAAGATGAACA 58.286 39.130 0.00 0.00 0.00 3.18
7845 22035 4.274950 GCTACACTTTGCTTCACCTGTAAA 59.725 41.667 0.00 0.00 0.00 2.01
7863 22053 2.637872 ACAGGTTAAGGCAAGAGCTACA 59.362 45.455 0.00 0.00 41.70 2.74
7970 22160 4.881273 CCACGACAAGAATTATGGAATGGA 59.119 41.667 0.00 0.00 0.00 3.41
7973 22163 6.834168 AAACCACGACAAGAATTATGGAAT 57.166 33.333 0.00 0.00 0.00 3.01
8023 22213 2.821378 TGGCAAGTGGTCATCAAATCTG 59.179 45.455 0.00 0.00 0.00 2.90
8049 22239 1.899814 ACACAGATTGTTAGCCTCGGA 59.100 47.619 0.00 0.00 33.09 4.55
8139 22329 4.420522 AACAACAATGTCCAGCCAAAAT 57.579 36.364 0.00 0.00 39.40 1.82
8180 22382 7.432252 GTCAATTTATCCGCTGGAATTAACTTG 59.568 37.037 1.44 7.60 34.34 3.16
8192 22394 7.546358 TCAATCAAAATGTCAATTTATCCGCT 58.454 30.769 0.00 0.00 34.84 5.52
8208 22410 9.844257 ATCCAGGTATTTTTGTTTCAATCAAAA 57.156 25.926 2.75 2.75 41.13 2.44
8256 22458 8.241497 AGCATATTTGTGTTCAATATGACCAT 57.759 30.769 14.18 0.00 32.92 3.55
8319 22540 9.221775 GTTCATAAATATAAGACGTTTTGGCAG 57.778 33.333 0.83 0.00 0.00 4.85
8328 22549 8.361139 ACTCCCTCTGTTCATAAATATAAGACG 58.639 37.037 0.00 0.00 0.00 4.18
8386 22607 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
8387 22608 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
8388 22609 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
8389 22610 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
8390 22611 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
8391 22612 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
8392 22613 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
8393 22614 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
8394 22615 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
8395 22616 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
8396 22617 8.514594 TCATTTTGATGACAAGTATTTCTGGAC 58.485 33.333 0.00 0.00 37.32 4.02
8397 22618 8.634335 TCATTTTGATGACAAGTATTTCTGGA 57.366 30.769 0.00 0.00 37.32 3.86
8398 22619 9.865321 ATTCATTTTGATGACAAGTATTTCTGG 57.135 29.630 0.00 0.00 37.32 3.86
8406 22627 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
8407 22628 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
8408 22629 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
8409 22630 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
8410 22631 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
8411 22632 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
8414 22635 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
8420 22641 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
8428 22649 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
8450 22671 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
8451 22672 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
8452 22673 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
8453 22674 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
8454 22675 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
8455 22676 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
8456 22677 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
8457 22678 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
8458 22679 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
8459 22680 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
8460 22681 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
8461 22682 6.985653 TCAAAATGGACAAAAAGGGATGTA 57.014 33.333 0.00 0.00 0.00 2.29
8462 22683 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
8463 22684 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
8464 22685 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
8465 22686 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
8466 22687 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
8467 22688 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
8468 22689 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
8469 22690 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
8470 22691 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
8471 22692 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
8472 22693 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
8473 22694 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
8474 22695 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
8475 22696 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
8476 22697 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
8477 22698 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
8478 22699 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
8479 22700 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
8480 22701 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
8481 22702 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
8482 22703 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
8483 22704 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
8484 22705 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
8485 22706 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
8486 22707 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
8487 22708 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
8488 22709 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
8489 22710 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
8490 22711 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
8491 22712 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
8492 22713 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
8493 22714 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
8494 22715 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
8495 22716 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
8496 22717 2.158564 ACATATACTCCCTCCGTCCGAA 60.159 50.000 0.00 0.00 0.00 4.30
8497 22718 1.422781 ACATATACTCCCTCCGTCCGA 59.577 52.381 0.00 0.00 0.00 4.55
8498 22719 1.906990 ACATATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
8499 22720 5.510349 GGTTTAACATATACTCCCTCCGTCC 60.510 48.000 0.00 0.00 0.00 4.79
8500 22721 5.303845 AGGTTTAACATATACTCCCTCCGTC 59.696 44.000 0.00 0.00 0.00 4.79
8501 22722 5.214293 AGGTTTAACATATACTCCCTCCGT 58.786 41.667 0.00 0.00 0.00 4.69
8502 22723 5.539193 AGAGGTTTAACATATACTCCCTCCG 59.461 44.000 0.00 0.00 38.38 4.63
8503 22724 6.997942 AGAGGTTTAACATATACTCCCTCC 57.002 41.667 0.00 0.00 38.38 4.30
8504 22725 8.019656 TCAAGAGGTTTAACATATACTCCCTC 57.980 38.462 0.00 0.00 37.98 4.30
8505 22726 7.989947 TCAAGAGGTTTAACATATACTCCCT 57.010 36.000 0.00 0.00 0.00 4.20
8506 22727 8.429641 TGATCAAGAGGTTTAACATATACTCCC 58.570 37.037 0.00 0.00 0.00 4.30
8507 22728 9.262358 GTGATCAAGAGGTTTAACATATACTCC 57.738 37.037 0.00 0.00 0.00 3.85
8508 22729 9.817809 TGTGATCAAGAGGTTTAACATATACTC 57.182 33.333 0.00 0.00 0.00 2.59
8509 22730 9.823647 CTGTGATCAAGAGGTTTAACATATACT 57.176 33.333 0.00 0.00 0.00 2.12
8510 22731 9.046296 CCTGTGATCAAGAGGTTTAACATATAC 57.954 37.037 12.25 0.00 0.00 1.47
8617 22840 3.055819 TCTCCACTAGAATCAACTGGTGC 60.056 47.826 0.00 0.00 44.24 5.01
8686 22926 2.646930 TGCGAGTAATCCCGAGTTCTA 58.353 47.619 0.00 0.00 0.00 2.10
8703 22943 0.385223 GAAAGCACAGCTGACTTGCG 60.385 55.000 23.35 2.27 39.62 4.85
8712 22952 1.803555 GAGTTGGAGAGAAAGCACAGC 59.196 52.381 0.00 0.00 0.00 4.40
8713 22953 2.421619 GGAGTTGGAGAGAAAGCACAG 58.578 52.381 0.00 0.00 0.00 3.66
8754 23007 9.973450 TGTGTAAATAGCAACAATAACACAATT 57.027 25.926 2.73 0.00 41.96 2.32
8763 23016 8.147058 TGGACAAAATGTGTAAATAGCAACAAT 58.853 29.630 0.00 0.00 41.96 2.71
8863 23123 1.355381 TCATCTGCCCAAGACCATGTT 59.645 47.619 0.00 0.00 37.88 2.71
8943 23203 3.383185 GGTACTAGCTGAGCAATCTGAGT 59.617 47.826 7.39 2.51 0.00 3.41
9010 23273 3.443045 CCCCACGGCTCATGCAAC 61.443 66.667 0.00 0.00 41.91 4.17
9147 23420 1.402787 AAACCCTCAGCCAACAGTTG 58.597 50.000 6.28 6.28 0.00 3.16
9166 23442 1.519751 CCCGATGCACCGAACCAAAA 61.520 55.000 0.00 0.00 0.00 2.44
9173 23449 3.309436 CTTCCACCCGATGCACCGA 62.309 63.158 0.00 0.00 0.00 4.69
9175 23451 2.438434 CCTTCCACCCGATGCACC 60.438 66.667 0.00 0.00 0.00 5.01
9187 23463 1.177401 GGCAACAGATTCACCCTTCC 58.823 55.000 0.00 0.00 0.00 3.46
9226 23502 4.177026 CTCCAGATTTGTCCAGTAACTCG 58.823 47.826 0.00 0.00 0.00 4.18
9235 23511 1.373570 CTTCGGCTCCAGATTTGTCC 58.626 55.000 0.00 0.00 0.00 4.02
9381 23658 5.334879 GCTCAACAATGGTGTTCGATAACTT 60.335 40.000 0.00 0.00 45.00 2.66
9435 23725 6.365520 ACCTCACAGATAATTTATTGGTCCC 58.634 40.000 0.00 0.00 0.00 4.46
9490 23785 9.945549 TGTCACTGACGATCGATGAATTCGAAT 62.946 40.741 24.34 4.39 46.70 3.34
9491 23786 8.749142 TGTCACTGACGATCGATGAATTCGAA 62.749 42.308 24.34 0.00 46.70 3.71
9493 23788 5.250994 TGTCACTGACGATCGATGAATTCG 61.251 45.833 24.34 2.63 41.37 3.34
9494 23789 4.105486 TGTCACTGACGATCGATGAATTC 58.895 43.478 24.34 8.22 34.95 2.17
9542 23838 1.090052 CCCCGAGCATTTTCGAGGTC 61.090 60.000 0.00 0.00 43.03 3.85
9604 23901 2.429571 CGTGCACTGCCAACATGC 60.430 61.111 16.19 0.00 39.88 4.06
9645 23942 1.338105 CGACCAAGATGCTTCAGGTCA 60.338 52.381 28.03 0.00 43.82 4.02
9661 23958 1.235281 GGTTTGGCTCTTGGTCGACC 61.235 60.000 28.17 28.17 0.00 4.79
9690 23987 4.235762 ACGCAGGCTGGTGTCGTT 62.236 61.111 17.64 0.00 29.74 3.85
9717 24037 3.250040 GTGGTGTACACGAAGAAGCATTT 59.750 43.478 19.41 0.00 40.85 2.32
9720 24040 1.860676 GTGGTGTACACGAAGAAGCA 58.139 50.000 19.41 7.29 40.85 3.91
9776 24096 1.270678 GGATTTATAGCCGGCTCCGTT 60.271 52.381 36.73 18.83 37.81 4.44
9778 24098 3.139029 GGATTTATAGCCGGCTCCG 57.861 57.895 36.73 0.48 39.44 4.63
9785 24105 1.429463 CTGCGGACGGATTTATAGCC 58.571 55.000 0.00 0.00 0.00 3.93
9809 24129 2.092323 GGTTAGTTGGGAAGATGTGGC 58.908 52.381 0.00 0.00 0.00 5.01
9824 24144 7.988737 TGCTATCATTCAATTCAACTGGTTAG 58.011 34.615 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.