Multiple sequence alignment - TraesCS7A01G438500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G438500 chr7A 100.000 2471 0 0 1 2471 632582717 632580247 0.000000e+00 4564.0
1 TraesCS7A01G438500 chr7A 86.910 932 83 26 785 1689 632531883 632532802 0.000000e+00 1009.0
2 TraesCS7A01G438500 chr7A 91.620 716 47 10 789 1493 632551335 632550622 0.000000e+00 977.0
3 TraesCS7A01G438500 chr7A 91.966 697 36 10 810 1493 632526436 632527125 0.000000e+00 959.0
4 TraesCS7A01G438500 chr7A 81.616 495 47 22 1488 1966 632527196 632527662 1.080000e-98 370.0
5 TraesCS7A01G438500 chr7B 88.827 1987 166 25 2 1966 592356346 592354394 0.000000e+00 2388.0
6 TraesCS7A01G438500 chr7B 86.551 922 72 23 810 1689 591713253 591714164 0.000000e+00 968.0
7 TraesCS7A01G438500 chr7B 90.327 734 40 15 803 1516 591949318 591950040 0.000000e+00 933.0
8 TraesCS7A01G438500 chr7B 90.694 720 32 11 792 1481 591723711 591724425 0.000000e+00 926.0
9 TraesCS7A01G438500 chr7B 88.177 406 44 3 2068 2471 571157286 571157689 4.780000e-132 481.0
10 TraesCS7A01G438500 chr7B 85.714 210 18 5 1488 1688 591950103 591950309 6.920000e-51 211.0
11 TraesCS7A01G438500 chr7B 83.254 209 24 3 1488 1688 592347791 592347586 5.430000e-42 182.0
12 TraesCS7A01G438500 chr7B 80.451 133 21 5 2337 2466 28071433 28071563 2.020000e-16 97.1
13 TraesCS7A01G438500 chr7B 97.619 42 1 0 2025 2066 592354388 592354347 3.410000e-09 73.1
14 TraesCS7A01G438500 chr7D 92.055 1674 105 15 1 1656 548783036 548781373 0.000000e+00 2329.0
15 TraesCS7A01G438500 chr7D 91.341 716 38 7 810 1503 548696962 548697675 0.000000e+00 957.0
16 TraesCS7A01G438500 chr7D 86.114 929 69 26 808 1689 548708856 548709771 0.000000e+00 946.0
17 TraesCS7A01G438500 chr7D 81.166 223 12 11 1759 1966 548781365 548781158 4.260000e-33 152.0
18 TraesCS7A01G438500 chr7D 96.429 84 3 0 1983 2066 548781172 548781089 3.310000e-29 139.0
19 TraesCS7A01G438500 chr7D 95.294 85 3 1 1983 2066 548779373 548779289 1.540000e-27 134.0
20 TraesCS7A01G438500 chr7D 79.699 133 22 4 2337 2466 201982886 201982756 9.410000e-15 91.6
21 TraesCS7A01G438500 chr1B 91.337 404 35 0 2066 2469 186181865 186182268 9.990000e-154 553.0
22 TraesCS7A01G438500 chr3A 90.123 405 38 2 2066 2470 703906915 703906513 2.180000e-145 525.0
23 TraesCS7A01G438500 chr5A 90.152 264 23 3 2066 2327 69547270 69547532 8.460000e-90 340.0
24 TraesCS7A01G438500 chr1D 79.048 420 79 9 1 416 453582826 453583240 1.870000e-71 279.0
25 TraesCS7A01G438500 chr5D 78.372 430 81 7 1 422 469238008 469238433 4.050000e-68 268.0
26 TraesCS7A01G438500 chr5D 83.146 89 14 1 335 422 75999616 75999704 2.040000e-11 80.5
27 TraesCS7A01G438500 chr2D 78.481 395 70 9 1 391 613467757 613468140 6.830000e-61 244.0
28 TraesCS7A01G438500 chr2D 77.857 280 51 6 152 422 23939920 23940197 1.970000e-36 163.0
29 TraesCS7A01G438500 chr2A 76.995 426 89 7 3 422 726289401 726289823 4.110000e-58 235.0
30 TraesCS7A01G438500 chrUn 84.348 115 15 3 2355 2469 394565322 394565211 2.600000e-20 110.0
31 TraesCS7A01G438500 chrUn 83.929 112 15 3 2355 2466 318889461 318889353 1.210000e-18 104.0
32 TraesCS7A01G438500 chr3B 83.929 112 15 3 2355 2466 740138910 740138802 1.210000e-18 104.0
33 TraesCS7A01G438500 chr3D 80.000 130 24 2 2340 2469 40169141 40169014 7.270000e-16 95.3
34 TraesCS7A01G438500 chr6A 91.489 47 4 0 378 424 139502836 139502790 5.700000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G438500 chr7A 632580247 632582717 2470 True 4564.00 4564 100.0000 1 2471 1 chr7A.!!$R2 2470
1 TraesCS7A01G438500 chr7A 632531883 632532802 919 False 1009.00 1009 86.9100 785 1689 1 chr7A.!!$F1 904
2 TraesCS7A01G438500 chr7A 632550622 632551335 713 True 977.00 977 91.6200 789 1493 1 chr7A.!!$R1 704
3 TraesCS7A01G438500 chr7A 632526436 632527662 1226 False 664.50 959 86.7910 810 1966 2 chr7A.!!$F2 1156
4 TraesCS7A01G438500 chr7B 592354347 592356346 1999 True 1230.55 2388 93.2230 2 2066 2 chr7B.!!$R2 2064
5 TraesCS7A01G438500 chr7B 591713253 591714164 911 False 968.00 968 86.5510 810 1689 1 chr7B.!!$F3 879
6 TraesCS7A01G438500 chr7B 591723711 591724425 714 False 926.00 926 90.6940 792 1481 1 chr7B.!!$F4 689
7 TraesCS7A01G438500 chr7B 591949318 591950309 991 False 572.00 933 88.0205 803 1688 2 chr7B.!!$F5 885
8 TraesCS7A01G438500 chr7D 548696962 548697675 713 False 957.00 957 91.3410 810 1503 1 chr7D.!!$F1 693
9 TraesCS7A01G438500 chr7D 548708856 548709771 915 False 946.00 946 86.1140 808 1689 1 chr7D.!!$F2 881
10 TraesCS7A01G438500 chr7D 548779289 548783036 3747 True 688.50 2329 91.2360 1 2066 4 chr7D.!!$R2 2065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 493 0.037447 TGGGTCAACATGAATGCGGA 59.963 50.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1944 0.034767 ACACATGGTGGGCATCAGAG 60.035 55.0 0.0 0.0 37.94 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.841441 GTCCAACCTGAATGGGCA 57.159 55.556 0.00 0.00 42.25 5.36
157 158 2.622436 GGCTGCAACGATAGAGAACTT 58.378 47.619 0.50 0.00 41.38 2.66
192 193 2.406616 GCCATGGCGGGTGTTGTAG 61.407 63.158 23.48 0.00 34.06 2.74
230 231 2.430367 GGAGGCGAGGTGTGGTTT 59.570 61.111 0.00 0.00 0.00 3.27
236 237 1.734388 GCGAGGTGTGGTTTTTGCCT 61.734 55.000 0.00 0.00 0.00 4.75
320 321 1.079819 CGTCGGCACAGGAACAGAT 60.080 57.895 0.00 0.00 0.00 2.90
360 361 5.564063 CGTCATAGTAGTTCCTCAACACACA 60.564 44.000 0.00 0.00 34.60 3.72
363 364 2.132762 GTAGTTCCTCAACACACACGG 58.867 52.381 0.00 0.00 34.60 4.94
372 373 2.353269 TCAACACACACGGCTGTTTAAG 59.647 45.455 0.00 0.00 0.00 1.85
387 388 1.335132 TTAAGGGAGGTAGGCAGGCG 61.335 60.000 0.00 0.00 0.00 5.52
391 392 3.075005 GAGGTAGGCAGGCGGACA 61.075 66.667 0.00 0.00 0.00 4.02
396 397 0.676782 GTAGGCAGGCGGACAAATGT 60.677 55.000 0.00 0.00 0.00 2.71
397 398 0.037590 TAGGCAGGCGGACAAATGTT 59.962 50.000 0.00 0.00 0.00 2.71
446 447 2.182537 CAAGCCGCTTCAATGCCC 59.817 61.111 1.56 0.00 0.00 5.36
458 459 3.335356 AATGCCCGCTCCAGTGAGG 62.335 63.158 0.00 0.00 39.14 3.86
467 468 1.949847 CTCCAGTGAGGGATCGCGTT 61.950 60.000 5.77 0.00 36.09 4.84
479 480 2.449031 ATCGCGTTTGCTCTGGGTCA 62.449 55.000 5.77 0.00 39.65 4.02
492 493 0.037447 TGGGTCAACATGAATGCGGA 59.963 50.000 0.00 0.00 0.00 5.54
574 578 1.130561 GTTAGAAGCGGGCATGACAAC 59.869 52.381 0.00 0.00 0.00 3.32
584 589 2.742372 ATGACAACGGCCAGACGC 60.742 61.111 2.24 0.00 37.37 5.19
657 662 7.393234 TGAACCAGATTGTAAACTGATAAAGGG 59.607 37.037 3.76 0.00 36.38 3.95
662 668 2.745281 TGTAAACTGATAAAGGGTGCGC 59.255 45.455 0.00 0.00 0.00 6.09
680 686 2.014128 CGCCGGATGACAAAAATAGGT 58.986 47.619 5.05 0.00 0.00 3.08
692 698 7.284074 TGACAAAAATAGGTCCAAACTGTCTA 58.716 34.615 0.00 0.00 33.49 2.59
701 707 6.542821 AGGTCCAAACTGTCTAAATGATTGA 58.457 36.000 0.00 0.00 0.00 2.57
712 718 5.476945 GTCTAAATGATTGAGGGTGGTTTGT 59.523 40.000 0.00 0.00 0.00 2.83
733 739 1.334869 GTATTGCTTTGGAGATGCCCG 59.665 52.381 0.00 0.00 34.97 6.13
749 755 1.662026 GCCCGTAGAAAAACAAGCACG 60.662 52.381 0.00 0.00 0.00 5.34
750 756 1.600485 CCCGTAGAAAAACAAGCACGT 59.400 47.619 0.00 0.00 0.00 4.49
778 784 9.638239 ATGATTAAACCATCAACAAACACATAC 57.362 29.630 0.00 0.00 36.74 2.39
785 791 7.446769 ACCATCAACAAACACATACTACTACA 58.553 34.615 0.00 0.00 0.00 2.74
827 836 4.210304 GACATCGCAGCCGTTCGC 62.210 66.667 0.00 0.00 35.54 4.70
952 994 4.350520 ACAAATCCCAAATCACCAACCAAT 59.649 37.500 0.00 0.00 0.00 3.16
1269 1318 2.576615 GCCAAGGACAACAAGAAGTCT 58.423 47.619 0.00 0.00 35.18 3.24
1401 1450 2.338785 GCTGCTGCCCAAGAAGACC 61.339 63.158 3.85 0.00 32.35 3.85
1440 1516 2.600173 CCCAAGAAGGCCGCCAAA 60.600 61.111 13.15 0.00 35.39 3.28
1484 1560 1.353804 CCTAGAGAGAGACGCGCAC 59.646 63.158 5.73 0.00 0.00 5.34
1486 1562 2.054140 CTAGAGAGAGACGCGCACCC 62.054 65.000 5.73 0.00 0.00 4.61
1600 1799 7.403312 TGAGGAAATTGTTTGTTCTTCTTCA 57.597 32.000 0.00 0.00 32.62 3.02
1608 1814 6.660887 TGTTTGTTCTTCTTCATTTTTGGC 57.339 33.333 0.00 0.00 0.00 4.52
1642 1858 1.201414 CATAGGTGCGGTGGAAAAACC 59.799 52.381 0.00 0.00 36.82 3.27
1666 1882 5.075448 CAGATCTGTTCGAATTTGTCAACG 58.925 41.667 14.95 0.00 0.00 4.10
1670 1886 6.347270 TCTGTTCGAATTTGTCAACGTTTA 57.653 33.333 0.00 0.00 0.00 2.01
1673 1889 7.584847 TCTGTTCGAATTTGTCAACGTTTATTC 59.415 33.333 0.00 2.85 0.00 1.75
1694 1910 1.201921 GCTTGTGGTACTGAATTCGCG 60.202 52.381 0.00 0.00 0.00 5.87
1697 1913 1.269883 TGTGGTACTGAATTCGCGTGT 60.270 47.619 5.77 4.94 0.00 4.49
1701 1917 0.390603 TACTGAATTCGCGTGTGGGG 60.391 55.000 5.77 0.00 0.00 4.96
1702 1918 1.671054 CTGAATTCGCGTGTGGGGT 60.671 57.895 5.77 0.00 0.00 4.95
1713 1929 0.750249 GTGTGGGGTGTTTTCCTTGG 59.250 55.000 0.00 0.00 0.00 3.61
1722 1938 4.430007 GGTGTTTTCCTTGGAAGTTTCAC 58.570 43.478 2.16 9.73 0.00 3.18
1723 1939 4.159693 GGTGTTTTCCTTGGAAGTTTCACT 59.840 41.667 17.77 0.00 0.00 3.41
1724 1940 5.102313 GTGTTTTCCTTGGAAGTTTCACTG 58.898 41.667 2.16 0.00 0.00 3.66
1725 1941 5.013547 TGTTTTCCTTGGAAGTTTCACTGA 58.986 37.500 2.16 0.00 0.00 3.41
1726 1942 5.656416 TGTTTTCCTTGGAAGTTTCACTGAT 59.344 36.000 2.16 0.00 0.00 2.90
1727 1943 5.772825 TTTCCTTGGAAGTTTCACTGATG 57.227 39.130 2.16 0.00 0.00 3.07
1728 1944 3.149196 TCCTTGGAAGTTTCACTGATGC 58.851 45.455 0.00 0.00 0.00 3.91
1729 1945 3.152341 CCTTGGAAGTTTCACTGATGCT 58.848 45.455 0.00 0.00 0.00 3.79
1730 1946 3.190118 CCTTGGAAGTTTCACTGATGCTC 59.810 47.826 0.00 0.00 0.00 4.26
1731 1947 3.777106 TGGAAGTTTCACTGATGCTCT 57.223 42.857 0.00 0.00 0.00 4.09
1751 1967 1.656818 GATGCCCACCATGTGTTCGG 61.657 60.000 0.00 0.00 33.29 4.30
1780 2001 3.876300 CTGTACCTTGACAGCGGC 58.124 61.111 0.00 0.00 40.42 6.53
1798 2019 4.475135 GGAGGCGGGACAGAAGGC 62.475 72.222 0.00 0.00 0.00 4.35
1799 2020 4.821589 GAGGCGGGACAGAAGGCG 62.822 72.222 0.00 0.00 35.47 5.52
1837 2058 2.738521 CGTCCTCGTTGCTGGGTG 60.739 66.667 0.00 0.00 0.00 4.61
1839 2060 3.241530 TCCTCGTTGCTGGGTGCT 61.242 61.111 0.00 0.00 43.37 4.40
1841 2062 3.052082 CTCGTTGCTGGGTGCTGG 61.052 66.667 0.00 0.00 43.37 4.85
1844 2065 2.034066 GTTGCTGGGTGCTGGCTA 59.966 61.111 0.00 0.00 43.37 3.93
1845 2066 2.034066 TTGCTGGGTGCTGGCTAC 59.966 61.111 0.00 0.00 43.37 3.58
1846 2067 3.899981 TTGCTGGGTGCTGGCTACG 62.900 63.158 0.00 0.00 43.37 3.51
1882 2103 4.148825 CCTTCCGCGCCTACAGCT 62.149 66.667 0.00 0.00 40.39 4.24
1924 2160 0.757935 AACCCCATCCATCAGCATGC 60.758 55.000 10.51 10.51 34.76 4.06
1934 2170 2.548707 CCATCAGCATGCCGTACTGTAT 60.549 50.000 15.66 0.00 34.76 2.29
1976 2212 2.888834 GCCTTTGGCTTGTCTCAAAA 57.111 45.000 0.73 0.00 46.69 2.44
1977 2213 3.177997 GCCTTTGGCTTGTCTCAAAAA 57.822 42.857 0.73 0.00 46.69 1.94
1995 2231 3.558931 AAAAAGAAGTTGGGCCTTTGG 57.441 42.857 4.53 0.00 31.30 3.28
2005 2241 3.042560 GCCTTTGGCCACTGTGAC 58.957 61.111 3.88 0.00 44.06 3.67
2006 2242 2.564721 GCCTTTGGCCACTGTGACC 61.565 63.158 3.88 7.94 44.06 4.02
2007 2243 2.260869 CCTTTGGCCACTGTGACCG 61.261 63.158 3.88 0.00 0.00 4.79
2008 2244 1.525995 CTTTGGCCACTGTGACCGT 60.526 57.895 3.88 0.00 0.00 4.83
2009 2245 1.507141 CTTTGGCCACTGTGACCGTC 61.507 60.000 3.88 0.00 0.00 4.79
2010 2246 3.800685 TTGGCCACTGTGACCGTCG 62.801 63.158 3.88 0.00 0.00 5.12
2014 2250 4.337060 CACTGTGACCGTCGCCGA 62.337 66.667 9.57 0.00 35.63 5.54
2015 2251 4.338539 ACTGTGACCGTCGCCGAC 62.339 66.667 7.29 7.29 35.63 4.79
2059 2317 3.181511 TGCAGCATTTCTATACAACGCAC 60.182 43.478 0.00 0.00 0.00 5.34
2066 2324 1.133598 TCTATACAACGCACTGTCCCG 59.866 52.381 0.00 0.00 0.00 5.14
2067 2325 0.458889 TATACAACGCACTGTCCCGC 60.459 55.000 0.00 0.00 0.00 6.13
2068 2326 2.443260 ATACAACGCACTGTCCCGCA 62.443 55.000 0.00 0.00 0.00 5.69
2069 2327 2.646117 TACAACGCACTGTCCCGCAA 62.646 55.000 0.00 0.00 0.00 4.85
2070 2328 2.515057 AACGCACTGTCCCGCAAA 60.515 55.556 0.00 0.00 0.00 3.68
2071 2329 2.542907 AACGCACTGTCCCGCAAAG 61.543 57.895 0.00 0.00 0.00 2.77
2072 2330 2.972505 CGCACTGTCCCGCAAAGT 60.973 61.111 0.00 0.00 0.00 2.66
2073 2331 2.946762 GCACTGTCCCGCAAAGTC 59.053 61.111 0.00 0.00 0.00 3.01
2075 2333 1.941812 CACTGTCCCGCAAAGTCAC 59.058 57.895 0.00 0.00 0.00 3.67
2076 2334 0.532862 CACTGTCCCGCAAAGTCACT 60.533 55.000 0.00 0.00 0.00 3.41
2077 2335 0.180406 ACTGTCCCGCAAAGTCACTT 59.820 50.000 0.00 0.00 0.00 3.16
2079 2337 1.676006 CTGTCCCGCAAAGTCACTTTT 59.324 47.619 0.00 0.00 30.60 2.27
2080 2338 2.875933 CTGTCCCGCAAAGTCACTTTTA 59.124 45.455 0.00 0.00 30.60 1.52
2081 2339 2.614983 TGTCCCGCAAAGTCACTTTTAC 59.385 45.455 0.00 0.00 30.60 2.01
2082 2340 2.031420 GTCCCGCAAAGTCACTTTTACC 60.031 50.000 0.00 0.00 30.60 2.85
2083 2341 1.069500 CCCGCAAAGTCACTTTTACCG 60.069 52.381 0.00 4.08 30.60 4.02
2084 2342 1.069500 CCGCAAAGTCACTTTTACCGG 60.069 52.381 15.50 15.50 33.85 5.28
2085 2343 1.069500 CGCAAAGTCACTTTTACCGGG 60.069 52.381 6.32 0.00 30.60 5.73
2087 2345 2.619646 GCAAAGTCACTTTTACCGGGAA 59.380 45.455 6.32 0.00 30.60 3.97
2088 2346 3.549423 GCAAAGTCACTTTTACCGGGAAC 60.549 47.826 6.32 0.00 30.60 3.62
2089 2347 2.874086 AAAGTCACTTTTACCGGGAACG 59.126 45.455 6.32 0.00 41.65 3.95
2108 2366 2.033194 GGAGCTACCGGCAACACAC 61.033 63.158 0.00 0.00 44.79 3.82
2109 2367 1.301401 GAGCTACCGGCAACACACA 60.301 57.895 0.00 0.00 44.79 3.72
2110 2368 1.566018 GAGCTACCGGCAACACACAC 61.566 60.000 0.00 0.00 44.79 3.82
2111 2369 2.613506 GCTACCGGCAACACACACC 61.614 63.158 0.00 0.00 41.35 4.16
2116 2374 1.007502 CGGCAACACACACCCAATG 60.008 57.895 0.00 0.00 0.00 2.82
2117 2375 1.451337 CGGCAACACACACCCAATGA 61.451 55.000 0.00 0.00 0.00 2.57
2118 2376 0.314935 GGCAACACACACCCAATGAG 59.685 55.000 0.00 0.00 0.00 2.90
2119 2377 0.314935 GCAACACACACCCAATGAGG 59.685 55.000 0.00 0.00 37.03 3.86
2120 2378 1.691196 CAACACACACCCAATGAGGT 58.309 50.000 0.00 0.00 42.40 3.85
2121 2379 2.031120 CAACACACACCCAATGAGGTT 58.969 47.619 0.00 0.00 38.39 3.50
2122 2380 1.981256 ACACACACCCAATGAGGTTC 58.019 50.000 0.00 0.00 38.39 3.62
2123 2381 1.494721 ACACACACCCAATGAGGTTCT 59.505 47.619 0.00 0.00 38.39 3.01
2124 2382 1.881973 CACACACCCAATGAGGTTCTG 59.118 52.381 0.00 0.00 38.39 3.02
2125 2383 0.883833 CACACCCAATGAGGTTCTGC 59.116 55.000 0.00 0.00 38.39 4.26
2126 2384 0.251341 ACACCCAATGAGGTTCTGCC 60.251 55.000 0.00 0.00 38.39 4.85
2127 2385 0.251297 CACCCAATGAGGTTCTGCCA 60.251 55.000 0.00 0.00 38.39 4.92
2128 2386 0.251341 ACCCAATGAGGTTCTGCCAC 60.251 55.000 0.00 0.00 36.44 5.01
2129 2387 0.251297 CCCAATGAGGTTCTGCCACA 60.251 55.000 0.00 0.00 41.94 4.17
2131 2389 1.475280 CCAATGAGGTTCTGCCACATG 59.525 52.381 0.00 0.00 45.77 3.21
2132 2390 2.439409 CAATGAGGTTCTGCCACATGA 58.561 47.619 0.00 0.00 45.77 3.07
2133 2391 3.021695 CAATGAGGTTCTGCCACATGAT 58.978 45.455 0.00 0.00 45.77 2.45
2134 2392 2.118313 TGAGGTTCTGCCACATGATG 57.882 50.000 0.00 0.00 40.61 3.07
2135 2393 1.352017 TGAGGTTCTGCCACATGATGT 59.648 47.619 0.00 0.00 40.61 3.06
2136 2394 4.184344 ATGAGGTTCTGCCACATGATGTG 61.184 47.826 18.28 18.28 44.98 3.21
2137 2395 1.074405 AGGTTCTGCCACATGATGTGT 59.926 47.619 22.62 0.19 46.45 3.72
2139 2397 3.054139 AGGTTCTGCCACATGATGTGTAT 60.054 43.478 22.62 0.00 46.45 2.29
2140 2398 3.313526 GGTTCTGCCACATGATGTGTATC 59.686 47.826 22.62 12.41 46.45 2.24
2141 2399 3.198409 TCTGCCACATGATGTGTATCC 57.802 47.619 22.62 9.61 46.45 2.59
2144 2402 2.025510 TGCCACATGATGTGTATCCCAA 60.026 45.455 22.62 0.00 46.45 4.12
2145 2403 3.225104 GCCACATGATGTGTATCCCAAT 58.775 45.455 22.62 0.00 46.45 3.16
2146 2404 4.141298 TGCCACATGATGTGTATCCCAATA 60.141 41.667 22.62 0.00 46.45 1.90
2147 2405 4.216257 GCCACATGATGTGTATCCCAATAC 59.784 45.833 22.62 0.00 46.45 1.89
2148 2406 5.375773 CCACATGATGTGTATCCCAATACA 58.624 41.667 22.62 0.00 46.45 2.29
2149 2407 5.471116 CCACATGATGTGTATCCCAATACAG 59.529 44.000 22.62 0.58 46.45 2.74
2150 2408 6.057533 CACATGATGTGTATCCCAATACAGT 58.942 40.000 17.08 0.00 46.45 3.55
2151 2409 6.543465 CACATGATGTGTATCCCAATACAGTT 59.457 38.462 17.08 0.00 46.45 3.16
2152 2410 6.543465 ACATGATGTGTATCCCAATACAGTTG 59.457 38.462 0.00 0.00 46.45 3.16
2153 2411 4.881273 TGATGTGTATCCCAATACAGTTGC 59.119 41.667 0.00 0.00 46.45 4.17
2154 2412 4.293662 TGTGTATCCCAATACAGTTGCA 57.706 40.909 0.00 0.00 46.45 4.08
2155 2413 4.006989 TGTGTATCCCAATACAGTTGCAC 58.993 43.478 0.00 0.00 46.45 4.57
2156 2414 3.063452 GTGTATCCCAATACAGTTGCACG 59.937 47.826 0.00 0.00 46.45 5.34
2157 2415 2.489938 ATCCCAATACAGTTGCACGT 57.510 45.000 0.00 0.00 0.00 4.49
2158 2416 3.620427 ATCCCAATACAGTTGCACGTA 57.380 42.857 0.00 0.00 0.00 3.57
2159 2417 3.620427 TCCCAATACAGTTGCACGTAT 57.380 42.857 0.00 0.00 0.00 3.06
2160 2418 3.945346 TCCCAATACAGTTGCACGTATT 58.055 40.909 8.76 8.76 38.53 1.89
2161 2419 4.328536 TCCCAATACAGTTGCACGTATTT 58.671 39.130 10.99 0.00 36.42 1.40
2162 2420 4.155099 TCCCAATACAGTTGCACGTATTTG 59.845 41.667 10.99 8.77 36.42 2.32
2163 2421 4.155099 CCCAATACAGTTGCACGTATTTGA 59.845 41.667 10.99 0.00 36.42 2.69
2164 2422 5.086058 CCAATACAGTTGCACGTATTTGAC 58.914 41.667 10.99 0.00 36.42 3.18
2165 2423 5.334491 CCAATACAGTTGCACGTATTTGACA 60.334 40.000 10.99 0.00 36.42 3.58
2166 2424 6.314018 CAATACAGTTGCACGTATTTGACAT 58.686 36.000 10.99 0.00 36.42 3.06
2167 2425 4.404507 ACAGTTGCACGTATTTGACATC 57.595 40.909 0.00 0.00 0.00 3.06
2168 2426 4.065088 ACAGTTGCACGTATTTGACATCT 58.935 39.130 0.00 0.00 0.00 2.90
2169 2427 4.515191 ACAGTTGCACGTATTTGACATCTT 59.485 37.500 0.00 0.00 0.00 2.40
2170 2428 5.008613 ACAGTTGCACGTATTTGACATCTTT 59.991 36.000 0.00 0.00 0.00 2.52
2171 2429 5.914635 CAGTTGCACGTATTTGACATCTTTT 59.085 36.000 0.00 0.00 0.00 2.27
2172 2430 6.086765 CAGTTGCACGTATTTGACATCTTTTC 59.913 38.462 0.00 0.00 0.00 2.29
2173 2431 5.041951 TGCACGTATTTGACATCTTTTCC 57.958 39.130 0.00 0.00 0.00 3.13
2174 2432 4.759693 TGCACGTATTTGACATCTTTTCCT 59.240 37.500 0.00 0.00 0.00 3.36
2175 2433 5.088739 GCACGTATTTGACATCTTTTCCTG 58.911 41.667 0.00 0.00 0.00 3.86
2176 2434 5.631026 CACGTATTTGACATCTTTTCCTGG 58.369 41.667 0.00 0.00 0.00 4.45
2177 2435 4.156008 ACGTATTTGACATCTTTTCCTGGC 59.844 41.667 0.00 0.00 0.00 4.85
2178 2436 4.396166 CGTATTTGACATCTTTTCCTGGCT 59.604 41.667 0.00 0.00 0.00 4.75
2179 2437 5.106157 CGTATTTGACATCTTTTCCTGGCTT 60.106 40.000 0.00 0.00 0.00 4.35
2180 2438 4.589216 TTTGACATCTTTTCCTGGCTTG 57.411 40.909 0.00 0.00 0.00 4.01
2183 2441 3.822735 TGACATCTTTTCCTGGCTTGAAG 59.177 43.478 0.00 0.00 0.00 3.02
2184 2442 3.823304 GACATCTTTTCCTGGCTTGAAGT 59.177 43.478 0.00 0.00 0.00 3.01
2188 2446 3.381272 TCTTTTCCTGGCTTGAAGTGTTG 59.619 43.478 0.00 0.00 0.00 3.33
2190 2448 0.550914 TCCTGGCTTGAAGTGTTGGT 59.449 50.000 0.00 0.00 0.00 3.67
2195 2453 4.321230 CCTGGCTTGAAGTGTTGGTATTTC 60.321 45.833 0.00 0.00 0.00 2.17
2199 2457 5.106515 GGCTTGAAGTGTTGGTATTTCTCTC 60.107 44.000 0.00 0.00 0.00 3.20
2200 2458 5.703130 GCTTGAAGTGTTGGTATTTCTCTCT 59.297 40.000 0.00 0.00 0.00 3.10
2202 2460 7.496529 TTGAAGTGTTGGTATTTCTCTCTTG 57.503 36.000 0.00 0.00 0.00 3.02
2203 2461 5.470098 TGAAGTGTTGGTATTTCTCTCTTGC 59.530 40.000 0.00 0.00 0.00 4.01
2204 2462 3.997021 AGTGTTGGTATTTCTCTCTTGCG 59.003 43.478 0.00 0.00 0.00 4.85
2205 2463 3.125316 GTGTTGGTATTTCTCTCTTGCGG 59.875 47.826 0.00 0.00 0.00 5.69
2206 2464 2.678336 GTTGGTATTTCTCTCTTGCGGG 59.322 50.000 0.00 0.00 0.00 6.13
2209 2467 2.937149 GGTATTTCTCTCTTGCGGGTTC 59.063 50.000 0.00 0.00 0.00 3.62
2216 2474 1.906574 TCTCTTGCGGGTTCTACCATT 59.093 47.619 0.00 0.00 41.02 3.16
2217 2475 2.009774 CTCTTGCGGGTTCTACCATTG 58.990 52.381 0.00 0.00 41.02 2.82
2218 2476 1.094785 CTTGCGGGTTCTACCATTGG 58.905 55.000 0.00 0.00 41.02 3.16
2219 2477 0.963355 TTGCGGGTTCTACCATTGGC 60.963 55.000 1.54 0.00 41.02 4.52
2220 2478 1.377987 GCGGGTTCTACCATTGGCA 60.378 57.895 1.54 0.00 41.02 4.92
2221 2479 1.376609 GCGGGTTCTACCATTGGCAG 61.377 60.000 1.54 0.00 41.02 4.85
2222 2480 0.251916 CGGGTTCTACCATTGGCAGA 59.748 55.000 1.54 1.34 41.02 4.26
2223 2481 1.134098 CGGGTTCTACCATTGGCAGAT 60.134 52.381 6.46 0.00 41.02 2.90
2224 2482 2.104111 CGGGTTCTACCATTGGCAGATA 59.896 50.000 6.46 0.00 41.02 1.98
2225 2483 3.433031 CGGGTTCTACCATTGGCAGATAA 60.433 47.826 6.46 0.00 41.02 1.75
2227 2485 4.580580 GGGTTCTACCATTGGCAGATAAAG 59.419 45.833 6.46 0.00 41.02 1.85
2229 2487 5.193679 GTTCTACCATTGGCAGATAAAGGT 58.806 41.667 6.46 0.00 0.00 3.50
2230 2488 4.780815 TCTACCATTGGCAGATAAAGGTG 58.219 43.478 1.54 0.00 0.00 4.00
2231 2489 2.738743 ACCATTGGCAGATAAAGGTGG 58.261 47.619 1.54 0.00 0.00 4.61
2232 2490 1.410153 CCATTGGCAGATAAAGGTGGC 59.590 52.381 0.00 0.00 39.62 5.01
2235 2493 1.766494 TGGCAGATAAAGGTGGCATG 58.234 50.000 0.00 0.00 43.69 4.06
2236 2494 0.386838 GGCAGATAAAGGTGGCATGC 59.613 55.000 9.90 9.90 39.03 4.06
2237 2495 1.105457 GCAGATAAAGGTGGCATGCA 58.895 50.000 21.36 2.54 32.58 3.96
2241 2499 3.131577 CAGATAAAGGTGGCATGCATTGT 59.868 43.478 21.36 4.34 0.00 2.71
2242 2500 3.382546 AGATAAAGGTGGCATGCATTGTC 59.617 43.478 21.36 12.66 0.00 3.18
2244 2502 0.251922 AAGGTGGCATGCATTGTCCT 60.252 50.000 21.36 15.02 0.00 3.85
2245 2503 0.625316 AGGTGGCATGCATTGTCCTA 59.375 50.000 21.36 0.00 0.00 2.94
2246 2504 1.216175 AGGTGGCATGCATTGTCCTAT 59.784 47.619 21.36 0.00 0.00 2.57
2248 2506 1.610522 GTGGCATGCATTGTCCTATCC 59.389 52.381 21.36 0.00 0.00 2.59
2249 2507 1.496001 TGGCATGCATTGTCCTATCCT 59.504 47.619 21.36 0.00 0.00 3.24
2250 2508 2.091720 TGGCATGCATTGTCCTATCCTT 60.092 45.455 21.36 0.00 0.00 3.36
2251 2509 2.555757 GGCATGCATTGTCCTATCCTTC 59.444 50.000 21.36 0.00 0.00 3.46
2253 2511 3.501445 GCATGCATTGTCCTATCCTTCTC 59.499 47.826 14.21 0.00 0.00 2.87
2257 2515 5.819991 TGCATTGTCCTATCCTTCTCTTTT 58.180 37.500 0.00 0.00 0.00 2.27
2258 2516 6.248433 TGCATTGTCCTATCCTTCTCTTTTT 58.752 36.000 0.00 0.00 0.00 1.94
2259 2517 6.375455 TGCATTGTCCTATCCTTCTCTTTTTC 59.625 38.462 0.00 0.00 0.00 2.29
2261 2519 7.121907 GCATTGTCCTATCCTTCTCTTTTTCTT 59.878 37.037 0.00 0.00 0.00 2.52
2262 2520 9.018582 CATTGTCCTATCCTTCTCTTTTTCTTT 57.981 33.333 0.00 0.00 0.00 2.52
2263 2521 8.622948 TTGTCCTATCCTTCTCTTTTTCTTTC 57.377 34.615 0.00 0.00 0.00 2.62
2264 2522 7.745717 TGTCCTATCCTTCTCTTTTTCTTTCA 58.254 34.615 0.00 0.00 0.00 2.69
2265 2523 7.661847 TGTCCTATCCTTCTCTTTTTCTTTCAC 59.338 37.037 0.00 0.00 0.00 3.18
2266 2524 7.661847 GTCCTATCCTTCTCTTTTTCTTTCACA 59.338 37.037 0.00 0.00 0.00 3.58
2267 2525 7.661847 TCCTATCCTTCTCTTTTTCTTTCACAC 59.338 37.037 0.00 0.00 0.00 3.82
2268 2526 5.734855 TCCTTCTCTTTTTCTTTCACACG 57.265 39.130 0.00 0.00 0.00 4.49
2269 2527 4.574828 TCCTTCTCTTTTTCTTTCACACGG 59.425 41.667 0.00 0.00 0.00 4.94
2270 2528 4.261197 CCTTCTCTTTTTCTTTCACACGGG 60.261 45.833 0.00 0.00 0.00 5.28
2271 2529 3.881220 TCTCTTTTTCTTTCACACGGGT 58.119 40.909 0.00 0.00 0.00 5.28
2272 2530 5.026038 TCTCTTTTTCTTTCACACGGGTA 57.974 39.130 0.00 0.00 0.00 3.69
2273 2531 4.812626 TCTCTTTTTCTTTCACACGGGTAC 59.187 41.667 0.00 0.00 0.00 3.34
2274 2532 4.515361 TCTTTTTCTTTCACACGGGTACA 58.485 39.130 0.00 0.00 0.00 2.90
2275 2533 4.942483 TCTTTTTCTTTCACACGGGTACAA 59.058 37.500 0.00 0.00 0.00 2.41
2277 2535 3.547054 TTCTTTCACACGGGTACAAGT 57.453 42.857 7.77 0.00 0.00 3.16
2279 2537 4.669206 TCTTTCACACGGGTACAAGTTA 57.331 40.909 7.77 0.00 0.00 2.24
2281 2539 4.992319 TCTTTCACACGGGTACAAGTTATG 59.008 41.667 7.77 0.00 0.00 1.90
2284 2542 3.321396 TCACACGGGTACAAGTTATGACA 59.679 43.478 0.00 0.00 0.00 3.58
2285 2543 3.430895 CACACGGGTACAAGTTATGACAC 59.569 47.826 0.00 0.00 0.00 3.67
2287 2545 4.250464 CACGGGTACAAGTTATGACACAT 58.750 43.478 0.00 0.00 0.00 3.21
2288 2546 4.693566 CACGGGTACAAGTTATGACACATT 59.306 41.667 0.00 0.00 0.00 2.71
2289 2547 4.933400 ACGGGTACAAGTTATGACACATTC 59.067 41.667 0.00 0.00 0.00 2.67
2294 2552 6.092259 GGTACAAGTTATGACACATTCACTCC 59.908 42.308 0.00 0.00 36.92 3.85
2299 2557 2.030027 TGACACATTCACTCCCTCCT 57.970 50.000 0.00 0.00 0.00 3.69
2300 2558 1.625315 TGACACATTCACTCCCTCCTG 59.375 52.381 0.00 0.00 0.00 3.86
2302 2560 1.625818 ACACATTCACTCCCTCCTGTC 59.374 52.381 0.00 0.00 0.00 3.51
2307 2565 0.836400 TCACTCCCTCCTGTCCAACC 60.836 60.000 0.00 0.00 0.00 3.77
2310 2568 0.036875 CTCCCTCCTGTCCAACCAAC 59.963 60.000 0.00 0.00 0.00 3.77
2311 2569 0.696143 TCCCTCCTGTCCAACCAACA 60.696 55.000 0.00 0.00 0.00 3.33
2313 2571 1.410932 CCCTCCTGTCCAACCAACAAA 60.411 52.381 0.00 0.00 0.00 2.83
2316 2574 2.100749 CTCCTGTCCAACCAACAAAACC 59.899 50.000 0.00 0.00 0.00 3.27
2317 2575 1.827969 CCTGTCCAACCAACAAAACCA 59.172 47.619 0.00 0.00 0.00 3.67
2318 2576 2.433970 CCTGTCCAACCAACAAAACCAT 59.566 45.455 0.00 0.00 0.00 3.55
2319 2577 3.492482 CCTGTCCAACCAACAAAACCATC 60.492 47.826 0.00 0.00 0.00 3.51
2322 2580 4.163078 TGTCCAACCAACAAAACCATCATT 59.837 37.500 0.00 0.00 0.00 2.57
2324 2582 5.588246 GTCCAACCAACAAAACCATCATTTT 59.412 36.000 0.00 0.00 31.87 1.82
2325 2583 6.763610 GTCCAACCAACAAAACCATCATTTTA 59.236 34.615 0.00 0.00 30.57 1.52
2326 2584 7.443879 GTCCAACCAACAAAACCATCATTTTAT 59.556 33.333 0.00 0.00 30.57 1.40
2327 2585 7.995488 TCCAACCAACAAAACCATCATTTTATT 59.005 29.630 0.00 0.00 30.57 1.40
2328 2586 8.288913 CCAACCAACAAAACCATCATTTTATTC 58.711 33.333 0.00 0.00 30.57 1.75
2330 2588 8.376889 ACCAACAAAACCATCATTTTATTCAC 57.623 30.769 0.00 0.00 30.57 3.18
2331 2589 7.443879 ACCAACAAAACCATCATTTTATTCACC 59.556 33.333 0.00 0.00 30.57 4.02
2332 2590 7.094848 CCAACAAAACCATCATTTTATTCACCC 60.095 37.037 0.00 0.00 30.57 4.61
2333 2591 6.472016 ACAAAACCATCATTTTATTCACCCC 58.528 36.000 0.00 0.00 30.57 4.95
2334 2592 6.043706 ACAAAACCATCATTTTATTCACCCCA 59.956 34.615 0.00 0.00 30.57 4.96
2336 2594 5.874897 ACCATCATTTTATTCACCCCATG 57.125 39.130 0.00 0.00 0.00 3.66
2339 2597 5.363292 CCATCATTTTATTCACCCCATGACA 59.637 40.000 0.00 0.00 36.92 3.58
2340 2598 6.127111 CCATCATTTTATTCACCCCATGACAA 60.127 38.462 0.00 0.00 36.92 3.18
2342 2600 7.493499 TCATTTTATTCACCCCATGACAATT 57.507 32.000 0.00 0.00 36.92 2.32
2343 2601 7.915930 TCATTTTATTCACCCCATGACAATTT 58.084 30.769 0.00 0.00 36.92 1.82
2344 2602 8.381636 TCATTTTATTCACCCCATGACAATTTT 58.618 29.630 0.00 0.00 36.92 1.82
2345 2603 9.664332 CATTTTATTCACCCCATGACAATTTTA 57.336 29.630 0.00 0.00 36.92 1.52
2348 2606 9.883142 TTTATTCACCCCATGACAATTTTAATC 57.117 29.630 0.00 0.00 36.92 1.75
2350 2608 7.493499 TTCACCCCATGACAATTTTAATCAT 57.507 32.000 0.00 0.00 36.92 2.45
2354 2612 9.835389 CACCCCATGACAATTTTAATCATTTAT 57.165 29.630 0.00 0.00 30.58 1.40
2417 2735 7.755582 AATTTTGAATTAATAGCGCCAAGAC 57.244 32.000 2.29 0.00 0.00 3.01
2418 2736 4.893424 TTGAATTAATAGCGCCAAGACC 57.107 40.909 2.29 0.00 0.00 3.85
2419 2737 4.150897 TGAATTAATAGCGCCAAGACCT 57.849 40.909 2.29 0.00 0.00 3.85
2425 2743 3.906720 ATAGCGCCAAGACCTTTAGAA 57.093 42.857 2.29 0.00 0.00 2.10
2426 2744 1.809684 AGCGCCAAGACCTTTAGAAC 58.190 50.000 2.29 0.00 0.00 3.01
2427 2745 1.071699 AGCGCCAAGACCTTTAGAACA 59.928 47.619 2.29 0.00 0.00 3.18
2428 2746 1.877443 GCGCCAAGACCTTTAGAACAA 59.123 47.619 0.00 0.00 0.00 2.83
2429 2747 2.095718 GCGCCAAGACCTTTAGAACAAG 60.096 50.000 0.00 0.00 0.00 3.16
2430 2748 3.399330 CGCCAAGACCTTTAGAACAAGA 58.601 45.455 0.00 0.00 0.00 3.02
2431 2749 3.186613 CGCCAAGACCTTTAGAACAAGAC 59.813 47.826 0.00 0.00 0.00 3.01
2432 2750 3.502595 GCCAAGACCTTTAGAACAAGACC 59.497 47.826 0.00 0.00 0.00 3.85
2435 2753 5.770162 CCAAGACCTTTAGAACAAGACCAAT 59.230 40.000 0.00 0.00 0.00 3.16
2436 2754 6.072452 CCAAGACCTTTAGAACAAGACCAATC 60.072 42.308 0.00 0.00 0.00 2.67
2438 2756 6.842676 AGACCTTTAGAACAAGACCAATCTT 58.157 36.000 0.00 0.00 46.63 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.680061 GGTTGGACAACTCCGTCTCT 59.320 55.000 14.14 0.00 39.88 3.10
40 41 2.370445 CCATCGCCACTCCCTCCTT 61.370 63.158 0.00 0.00 0.00 3.36
145 146 5.399892 GGCGAACATAAGAAGTTCTCTATCG 59.600 44.000 5.70 12.54 42.37 2.92
148 149 4.439700 CCGGCGAACATAAGAAGTTCTCTA 60.440 45.833 9.30 1.92 42.37 2.43
157 158 1.143183 GCCTCCGGCGAACATAAGA 59.857 57.895 9.30 0.00 39.62 2.10
192 193 2.430332 CACTCTCTCCACATCCTCCTTC 59.570 54.545 0.00 0.00 0.00 3.46
230 231 1.152589 TGTCCATGTGCCAGGCAAA 60.153 52.632 18.28 12.58 41.47 3.68
236 237 2.868899 TGTAAATGTGTCCATGTGCCA 58.131 42.857 0.00 0.00 0.00 4.92
272 273 1.679898 CCTTTTCCGACTGGCTCCT 59.320 57.895 0.00 0.00 34.14 3.69
292 293 1.665679 CTGTGCCGACGAGCATTAAAT 59.334 47.619 12.93 0.00 46.24 1.40
304 305 0.320683 CACATCTGTTCCTGTGCCGA 60.321 55.000 0.00 0.00 36.65 5.54
360 361 1.553704 CTACCTCCCTTAAACAGCCGT 59.446 52.381 0.00 0.00 0.00 5.68
363 364 1.280998 TGCCTACCTCCCTTAAACAGC 59.719 52.381 0.00 0.00 0.00 4.40
387 388 3.184178 CCGCATTGAAACAACATTTGTCC 59.816 43.478 0.00 0.00 44.59 4.02
388 389 4.047822 TCCGCATTGAAACAACATTTGTC 58.952 39.130 0.00 0.00 44.59 3.18
391 392 4.278170 TCTCTCCGCATTGAAACAACATTT 59.722 37.500 0.00 0.00 0.00 2.32
396 397 2.813754 CCTTCTCTCCGCATTGAAACAA 59.186 45.455 0.00 0.00 0.00 2.83
397 398 2.426522 CCTTCTCTCCGCATTGAAACA 58.573 47.619 0.00 0.00 0.00 2.83
430 431 3.443045 CGGGCATTGAAGCGGCTT 61.443 61.111 16.36 16.36 34.64 4.35
458 459 2.464459 CCCAGAGCAAACGCGATCC 61.464 63.158 15.93 0.00 0.00 3.36
460 461 1.741770 GACCCAGAGCAAACGCGAT 60.742 57.895 15.93 0.00 0.00 4.58
467 468 2.655090 TTCATGTTGACCCAGAGCAA 57.345 45.000 0.00 0.00 0.00 3.91
479 480 2.019249 CCAGATGTCCGCATTCATGTT 58.981 47.619 0.00 0.00 35.07 2.71
584 589 0.463620 CACACTGGGGTTTTTGTGGG 59.536 55.000 0.00 0.00 36.51 4.61
640 645 3.189702 GCGCACCCTTTATCAGTTTACAA 59.810 43.478 0.30 0.00 0.00 2.41
657 662 0.109319 ATTTTTGTCATCCGGCGCAC 60.109 50.000 10.83 0.00 0.00 5.34
662 668 3.616219 TGGACCTATTTTTGTCATCCGG 58.384 45.455 0.00 0.00 33.09 5.14
680 686 5.945784 CCCTCAATCATTTAGACAGTTTGGA 59.054 40.000 0.00 0.00 0.00 3.53
692 698 3.966665 ACACAAACCACCCTCAATCATTT 59.033 39.130 0.00 0.00 0.00 2.32
701 707 2.675658 AGCAATACACAAACCACCCT 57.324 45.000 0.00 0.00 0.00 4.34
712 718 2.378038 GGGCATCTCCAAAGCAATACA 58.622 47.619 0.00 0.00 36.21 2.29
733 739 9.601971 TTAATCATAACGTGCTTGTTTTTCTAC 57.398 29.630 0.00 0.00 33.32 2.59
749 755 9.469807 TGTGTTTGTTGATGGTTTAATCATAAC 57.530 29.630 0.00 0.00 36.48 1.89
778 784 9.046296 GGTCAAGATATGGATTTGTTGTAGTAG 57.954 37.037 0.00 0.00 0.00 2.57
785 791 6.078456 TCTGGGTCAAGATATGGATTTGTT 57.922 37.500 0.00 0.00 0.00 2.83
827 836 1.521681 GGTTGGATCGCGAGGGAAG 60.522 63.158 16.66 0.00 0.00 3.46
952 994 1.396594 GGAGAGGAGGGAAGGGGAA 59.603 63.158 0.00 0.00 0.00 3.97
1401 1450 4.082523 TTGGGCTCCTTCTCCGCG 62.083 66.667 0.00 0.00 0.00 6.46
1440 1516 2.286121 TCGGCCTTCTTGGGGGAT 60.286 61.111 0.00 0.00 36.00 3.85
1484 1560 0.180406 ACAACGCCTAGGCTAATGGG 59.820 55.000 30.55 16.59 39.32 4.00
1486 1562 3.123804 CACTACAACGCCTAGGCTAATG 58.876 50.000 30.55 25.47 39.32 1.90
1600 1799 4.572389 TGTTAACATTGCAACGCCAAAAAT 59.428 33.333 3.59 0.00 0.00 1.82
1608 1814 3.851403 GCACCTATGTTAACATTGCAACG 59.149 43.478 27.29 16.03 37.48 4.10
1642 1858 5.385617 GTTGACAAATTCGAACAGATCTGG 58.614 41.667 26.08 9.26 34.19 3.86
1666 1882 5.600908 TTCAGTACCACAAGCGAATAAAC 57.399 39.130 0.00 0.00 0.00 2.01
1670 1886 3.370978 CGAATTCAGTACCACAAGCGAAT 59.629 43.478 6.22 0.00 0.00 3.34
1673 1889 1.201921 GCGAATTCAGTACCACAAGCG 60.202 52.381 6.22 0.00 0.00 4.68
1694 1910 0.750249 CCAAGGAAAACACCCCACAC 59.250 55.000 0.00 0.00 0.00 3.82
1697 1913 1.289530 ACTTCCAAGGAAAACACCCCA 59.710 47.619 2.78 0.00 33.34 4.96
1713 1929 7.378008 GGCATCAGAGCATCAGTGAAACTTC 62.378 48.000 0.00 0.00 40.65 3.01
1722 1938 0.818445 GGTGGGCATCAGAGCATCAG 60.818 60.000 0.00 0.00 37.82 2.90
1723 1939 1.225426 GGTGGGCATCAGAGCATCA 59.775 57.895 0.00 0.00 37.82 3.07
1724 1940 0.178998 ATGGTGGGCATCAGAGCATC 60.179 55.000 0.00 0.00 35.83 3.91
1725 1941 0.467474 CATGGTGGGCATCAGAGCAT 60.467 55.000 0.00 0.00 35.83 3.79
1726 1942 1.077285 CATGGTGGGCATCAGAGCA 60.077 57.895 0.00 0.00 35.83 4.26
1727 1943 1.077212 ACATGGTGGGCATCAGAGC 60.077 57.895 0.00 0.00 0.00 4.09
1728 1944 0.034767 ACACATGGTGGGCATCAGAG 60.035 55.000 0.00 0.00 37.94 3.35
1729 1945 0.405198 AACACATGGTGGGCATCAGA 59.595 50.000 0.00 0.00 37.94 3.27
1730 1946 0.813184 GAACACATGGTGGGCATCAG 59.187 55.000 0.00 0.00 37.94 2.90
1731 1947 0.959867 CGAACACATGGTGGGCATCA 60.960 55.000 0.00 0.00 37.94 3.07
1767 1988 4.379243 CTCCGCCGCTGTCAAGGT 62.379 66.667 0.00 0.00 0.00 3.50
1780 2001 4.148825 CCTTCTGTCCCGCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
1820 2041 2.738521 CACCCAGCAACGAGGACG 60.739 66.667 0.00 0.00 45.75 4.79
1837 2058 4.530857 ATGACCGCCGTAGCCAGC 62.531 66.667 0.00 0.00 34.57 4.85
1839 2060 4.830765 GCATGACCGCCGTAGCCA 62.831 66.667 0.00 0.00 34.57 4.75
1881 2102 1.664151 GGAGATAAACGCGTGGGAAAG 59.336 52.381 14.98 0.00 0.00 2.62
1882 2103 1.729284 GGAGATAAACGCGTGGGAAA 58.271 50.000 14.98 0.00 0.00 3.13
1904 2140 1.325355 CATGCTGATGGATGGGGTTC 58.675 55.000 0.00 0.00 38.20 3.62
1924 2160 1.823828 GAGTGCGACATACAGTACGG 58.176 55.000 0.00 0.00 0.00 4.02
1934 2170 0.885150 ACTGAGAGACGAGTGCGACA 60.885 55.000 0.00 0.00 41.64 4.35
1975 2211 2.421388 GCCAAAGGCCCAACTTCTTTTT 60.421 45.455 0.00 0.00 44.06 1.94
1976 2212 1.140852 GCCAAAGGCCCAACTTCTTTT 59.859 47.619 0.00 0.00 44.06 2.27
1977 2213 0.758734 GCCAAAGGCCCAACTTCTTT 59.241 50.000 0.00 0.00 44.06 2.52
1978 2214 2.440946 GCCAAAGGCCCAACTTCTT 58.559 52.632 0.00 0.00 44.06 2.52
1979 2215 4.198087 GCCAAAGGCCCAACTTCT 57.802 55.556 0.00 0.00 44.06 2.85
1989 2225 2.260869 CGGTCACAGTGGCCAAAGG 61.261 63.158 24.19 3.62 43.88 3.11
1990 2226 1.507141 GACGGTCACAGTGGCCAAAG 61.507 60.000 24.19 10.35 43.88 2.77
1991 2227 1.525077 GACGGTCACAGTGGCCAAA 60.525 57.895 24.19 0.00 43.88 3.28
1992 2228 2.110213 GACGGTCACAGTGGCCAA 59.890 61.111 24.19 0.00 43.88 4.52
1993 2229 4.293648 CGACGGTCACAGTGGCCA 62.294 66.667 24.19 0.00 43.88 5.36
2010 2246 3.558411 GTCATGCTCTGCGTCGGC 61.558 66.667 0.00 0.00 40.52 5.54
2011 2247 2.887568 GGTCATGCTCTGCGTCGG 60.888 66.667 0.00 0.00 0.00 4.79
2012 2248 3.250323 CGGTCATGCTCTGCGTCG 61.250 66.667 0.00 0.00 0.00 5.12
2013 2249 2.887568 CCGGTCATGCTCTGCGTC 60.888 66.667 0.00 0.00 0.00 5.19
2016 2252 2.747460 TTGCCGGTCATGCTCTGC 60.747 61.111 1.90 0.00 0.00 4.26
2017 2253 1.028330 ATGTTGCCGGTCATGCTCTG 61.028 55.000 1.90 0.00 0.00 3.35
2018 2254 0.322816 AATGTTGCCGGTCATGCTCT 60.323 50.000 1.90 0.00 0.00 4.09
2019 2255 0.179156 CAATGTTGCCGGTCATGCTC 60.179 55.000 1.90 0.00 0.00 4.26
2020 2256 1.885157 CAATGTTGCCGGTCATGCT 59.115 52.632 1.90 0.00 0.00 3.79
2021 2257 4.481870 CAATGTTGCCGGTCATGC 57.518 55.556 1.90 0.00 0.00 4.06
2059 2317 1.308998 AAAGTGACTTTGCGGGACAG 58.691 50.000 10.18 0.00 31.98 3.51
2066 2324 2.223745 TCCCGGTAAAAGTGACTTTGC 58.776 47.619 11.83 7.73 33.64 3.68
2067 2325 3.303526 CGTTCCCGGTAAAAGTGACTTTG 60.304 47.826 11.83 0.00 33.64 2.77
2068 2326 2.874086 CGTTCCCGGTAAAAGTGACTTT 59.126 45.455 4.45 4.45 34.94 2.66
2069 2327 2.486918 CGTTCCCGGTAAAAGTGACTT 58.513 47.619 0.00 0.00 0.00 3.01
2070 2328 2.159327 CGTTCCCGGTAAAAGTGACT 57.841 50.000 0.00 0.00 0.00 3.41
2082 2340 4.203076 CGGTAGCTCCCGTTCCCG 62.203 72.222 10.00 0.00 43.07 5.14
2083 2341 3.846430 CCGGTAGCTCCCGTTCCC 61.846 72.222 17.19 0.00 46.66 3.97
2084 2342 4.525949 GCCGGTAGCTCCCGTTCC 62.526 72.222 17.19 0.81 46.66 3.62
2085 2343 3.305177 TTGCCGGTAGCTCCCGTTC 62.305 63.158 17.19 8.50 46.66 3.95
2087 2345 4.078516 GTTGCCGGTAGCTCCCGT 62.079 66.667 17.19 0.00 46.66 5.28
2089 2347 2.436115 GTGTTGCCGGTAGCTCCC 60.436 66.667 8.03 0.00 44.23 4.30
2090 2348 2.033194 GTGTGTTGCCGGTAGCTCC 61.033 63.158 8.03 0.00 44.23 4.70
2093 2351 2.613506 GGTGTGTGTTGCCGGTAGC 61.614 63.158 1.90 0.00 44.14 3.58
2094 2352 1.964373 GGGTGTGTGTTGCCGGTAG 60.964 63.158 1.90 0.00 0.00 3.18
2095 2353 2.111460 GGGTGTGTGTTGCCGGTA 59.889 61.111 1.90 0.00 0.00 4.02
2097 2355 2.199652 ATTGGGTGTGTGTTGCCGG 61.200 57.895 0.00 0.00 0.00 6.13
2099 2357 0.314935 CTCATTGGGTGTGTGTTGCC 59.685 55.000 0.00 0.00 0.00 4.52
2101 2359 1.691196 ACCTCATTGGGTGTGTGTTG 58.309 50.000 0.00 0.00 41.11 3.33
2102 2360 2.091885 AGAACCTCATTGGGTGTGTGTT 60.092 45.455 0.00 0.00 39.85 3.32
2103 2361 1.494721 AGAACCTCATTGGGTGTGTGT 59.505 47.619 0.00 0.00 39.85 3.72
2104 2362 1.881973 CAGAACCTCATTGGGTGTGTG 59.118 52.381 0.00 0.00 41.47 3.82
2108 2366 0.251297 TGGCAGAACCTCATTGGGTG 60.251 55.000 0.00 0.00 39.85 4.61
2109 2367 0.251341 GTGGCAGAACCTCATTGGGT 60.251 55.000 0.00 0.00 42.05 4.51
2110 2368 0.251297 TGTGGCAGAACCTCATTGGG 60.251 55.000 0.00 0.00 37.01 4.12
2111 2369 3.344703 TGTGGCAGAACCTCATTGG 57.655 52.632 0.00 0.00 37.01 3.16
2116 2374 1.741706 CACATCATGTGGCAGAACCTC 59.258 52.381 10.22 0.00 44.27 3.85
2117 2375 1.830279 CACATCATGTGGCAGAACCT 58.170 50.000 10.22 0.00 44.27 3.50
2127 2385 6.252599 ACTGTATTGGGATACACATCATGT 57.747 37.500 0.00 0.00 42.36 3.21
2128 2386 6.513884 GCAACTGTATTGGGATACACATCATG 60.514 42.308 0.00 0.00 42.36 3.07
2129 2387 5.532406 GCAACTGTATTGGGATACACATCAT 59.468 40.000 0.00 0.00 42.36 2.45
2131 2389 4.881273 TGCAACTGTATTGGGATACACATC 59.119 41.667 0.00 0.00 42.36 3.06
2132 2390 4.640201 GTGCAACTGTATTGGGATACACAT 59.360 41.667 0.00 0.00 42.36 3.21
2133 2391 4.006989 GTGCAACTGTATTGGGATACACA 58.993 43.478 0.00 0.00 42.36 3.72
2134 2392 3.063452 CGTGCAACTGTATTGGGATACAC 59.937 47.826 0.00 0.00 42.36 2.90
2135 2393 3.266636 CGTGCAACTGTATTGGGATACA 58.733 45.455 0.00 0.00 44.40 2.29
2136 2394 3.267483 ACGTGCAACTGTATTGGGATAC 58.733 45.455 0.00 0.00 38.88 2.24
2137 2395 3.620427 ACGTGCAACTGTATTGGGATA 57.380 42.857 0.00 0.00 31.75 2.59
2139 2397 3.620427 ATACGTGCAACTGTATTGGGA 57.380 42.857 0.00 0.00 34.55 4.37
2140 2398 4.155099 TCAAATACGTGCAACTGTATTGGG 59.845 41.667 16.47 13.10 41.79 4.12
2141 2399 5.086058 GTCAAATACGTGCAACTGTATTGG 58.914 41.667 16.47 14.51 41.79 3.16
2144 2402 5.874810 AGATGTCAAATACGTGCAACTGTAT 59.125 36.000 0.00 0.00 37.86 2.29
2145 2403 5.234752 AGATGTCAAATACGTGCAACTGTA 58.765 37.500 0.00 0.00 32.32 2.74
2146 2404 4.065088 AGATGTCAAATACGTGCAACTGT 58.935 39.130 0.00 0.00 31.75 3.55
2147 2405 4.668576 AGATGTCAAATACGTGCAACTG 57.331 40.909 0.00 0.00 31.75 3.16
2148 2406 5.689383 AAAGATGTCAAATACGTGCAACT 57.311 34.783 0.00 0.00 31.75 3.16
2149 2407 5.342259 GGAAAAGATGTCAAATACGTGCAAC 59.658 40.000 0.00 0.00 0.00 4.17
2150 2408 5.240623 AGGAAAAGATGTCAAATACGTGCAA 59.759 36.000 0.00 0.00 0.00 4.08
2151 2409 4.759693 AGGAAAAGATGTCAAATACGTGCA 59.240 37.500 0.00 0.00 0.00 4.57
2152 2410 5.088739 CAGGAAAAGATGTCAAATACGTGC 58.911 41.667 0.00 0.00 0.00 5.34
2153 2411 5.631026 CCAGGAAAAGATGTCAAATACGTG 58.369 41.667 0.00 0.00 0.00 4.49
2154 2412 4.156008 GCCAGGAAAAGATGTCAAATACGT 59.844 41.667 0.00 0.00 0.00 3.57
2155 2413 4.396166 AGCCAGGAAAAGATGTCAAATACG 59.604 41.667 0.00 0.00 0.00 3.06
2156 2414 5.904362 AGCCAGGAAAAGATGTCAAATAC 57.096 39.130 0.00 0.00 0.00 1.89
2157 2415 6.009589 TCAAGCCAGGAAAAGATGTCAAATA 58.990 36.000 0.00 0.00 0.00 1.40
2158 2416 4.834496 TCAAGCCAGGAAAAGATGTCAAAT 59.166 37.500 0.00 0.00 0.00 2.32
2159 2417 4.214310 TCAAGCCAGGAAAAGATGTCAAA 58.786 39.130 0.00 0.00 0.00 2.69
2160 2418 3.831323 TCAAGCCAGGAAAAGATGTCAA 58.169 40.909 0.00 0.00 0.00 3.18
2161 2419 3.507162 TCAAGCCAGGAAAAGATGTCA 57.493 42.857 0.00 0.00 0.00 3.58
2162 2420 3.823304 ACTTCAAGCCAGGAAAAGATGTC 59.177 43.478 0.00 0.00 0.00 3.06
2163 2421 3.571401 CACTTCAAGCCAGGAAAAGATGT 59.429 43.478 0.00 0.00 0.00 3.06
2164 2422 3.571401 ACACTTCAAGCCAGGAAAAGATG 59.429 43.478 0.00 0.00 0.00 2.90
2165 2423 3.837355 ACACTTCAAGCCAGGAAAAGAT 58.163 40.909 0.00 0.00 0.00 2.40
2166 2424 3.297134 ACACTTCAAGCCAGGAAAAGA 57.703 42.857 0.00 0.00 0.00 2.52
2167 2425 3.491447 CCAACACTTCAAGCCAGGAAAAG 60.491 47.826 0.00 0.00 0.00 2.27
2168 2426 2.430332 CCAACACTTCAAGCCAGGAAAA 59.570 45.455 0.00 0.00 0.00 2.29
2169 2427 2.031120 CCAACACTTCAAGCCAGGAAA 58.969 47.619 0.00 0.00 0.00 3.13
2170 2428 1.064017 ACCAACACTTCAAGCCAGGAA 60.064 47.619 0.00 0.00 0.00 3.36
2171 2429 0.550914 ACCAACACTTCAAGCCAGGA 59.449 50.000 0.00 0.00 0.00 3.86
2172 2430 2.270352 TACCAACACTTCAAGCCAGG 57.730 50.000 0.00 0.00 0.00 4.45
2173 2431 4.520492 AGAAATACCAACACTTCAAGCCAG 59.480 41.667 0.00 0.00 0.00 4.85
2174 2432 4.469657 AGAAATACCAACACTTCAAGCCA 58.530 39.130 0.00 0.00 0.00 4.75
2175 2433 4.762251 AGAGAAATACCAACACTTCAAGCC 59.238 41.667 0.00 0.00 0.00 4.35
2176 2434 5.703130 AGAGAGAAATACCAACACTTCAAGC 59.297 40.000 0.00 0.00 0.00 4.01
2177 2435 7.579726 CAAGAGAGAAATACCAACACTTCAAG 58.420 38.462 0.00 0.00 0.00 3.02
2178 2436 6.017109 GCAAGAGAGAAATACCAACACTTCAA 60.017 38.462 0.00 0.00 0.00 2.69
2179 2437 5.470098 GCAAGAGAGAAATACCAACACTTCA 59.530 40.000 0.00 0.00 0.00 3.02
2180 2438 5.389935 CGCAAGAGAGAAATACCAACACTTC 60.390 44.000 0.00 0.00 43.02 3.01
2183 2441 3.125316 CCGCAAGAGAGAAATACCAACAC 59.875 47.826 0.00 0.00 43.02 3.32
2184 2442 3.334691 CCGCAAGAGAGAAATACCAACA 58.665 45.455 0.00 0.00 43.02 3.33
2188 2446 2.693267 ACCCGCAAGAGAGAAATACC 57.307 50.000 0.00 0.00 43.02 2.73
2190 2448 4.142004 GGTAGAACCCGCAAGAGAGAAATA 60.142 45.833 0.00 0.00 43.02 1.40
2195 2453 0.895530 TGGTAGAACCCGCAAGAGAG 59.104 55.000 0.00 0.00 37.50 3.20
2199 2457 1.094785 CCAATGGTAGAACCCGCAAG 58.905 55.000 0.00 0.00 37.50 4.01
2200 2458 0.963355 GCCAATGGTAGAACCCGCAA 60.963 55.000 0.00 0.00 37.50 4.85
2202 2460 1.376609 CTGCCAATGGTAGAACCCGC 61.377 60.000 12.22 0.00 37.63 6.13
2203 2461 0.251916 TCTGCCAATGGTAGAACCCG 59.748 55.000 17.72 0.00 41.25 5.28
2204 2462 2.736670 ATCTGCCAATGGTAGAACCC 57.263 50.000 23.25 0.00 46.61 4.11
2205 2463 4.580580 CCTTTATCTGCCAATGGTAGAACC 59.419 45.833 23.25 0.00 46.61 3.62
2206 2464 5.066505 CACCTTTATCTGCCAATGGTAGAAC 59.933 44.000 23.25 0.00 46.61 3.01
2209 2467 3.885297 CCACCTTTATCTGCCAATGGTAG 59.115 47.826 11.33 11.33 36.75 3.18
2216 2474 1.766494 CATGCCACCTTTATCTGCCA 58.234 50.000 0.00 0.00 0.00 4.92
2217 2475 0.386838 GCATGCCACCTTTATCTGCC 59.613 55.000 6.36 0.00 0.00 4.85
2218 2476 1.105457 TGCATGCCACCTTTATCTGC 58.895 50.000 16.68 0.00 0.00 4.26
2219 2477 3.131577 ACAATGCATGCCACCTTTATCTG 59.868 43.478 16.68 4.35 0.00 2.90
2220 2478 3.368248 ACAATGCATGCCACCTTTATCT 58.632 40.909 16.68 0.00 0.00 1.98
2221 2479 3.491447 GGACAATGCATGCCACCTTTATC 60.491 47.826 16.68 2.02 0.00 1.75
2222 2480 2.431782 GGACAATGCATGCCACCTTTAT 59.568 45.455 16.68 0.00 0.00 1.40
2223 2481 1.824230 GGACAATGCATGCCACCTTTA 59.176 47.619 16.68 0.00 0.00 1.85
2224 2482 0.609662 GGACAATGCATGCCACCTTT 59.390 50.000 16.68 0.00 0.00 3.11
2225 2483 0.251922 AGGACAATGCATGCCACCTT 60.252 50.000 16.68 0.44 29.92 3.50
2227 2485 1.610522 GATAGGACAATGCATGCCACC 59.389 52.381 16.68 10.97 0.00 4.61
2229 2487 1.496001 AGGATAGGACAATGCATGCCA 59.504 47.619 16.68 3.52 0.00 4.92
2230 2488 2.283145 AGGATAGGACAATGCATGCC 57.717 50.000 16.68 2.32 0.00 4.40
2231 2489 3.484407 AGAAGGATAGGACAATGCATGC 58.516 45.455 11.82 11.82 0.00 4.06
2232 2490 4.970711 AGAGAAGGATAGGACAATGCATG 58.029 43.478 0.00 0.00 0.00 4.06
2235 2493 6.601217 AGAAAAAGAGAAGGATAGGACAATGC 59.399 38.462 0.00 0.00 0.00 3.56
2236 2494 8.572855 AAGAAAAAGAGAAGGATAGGACAATG 57.427 34.615 0.00 0.00 0.00 2.82
2237 2495 9.237187 GAAAGAAAAAGAGAAGGATAGGACAAT 57.763 33.333 0.00 0.00 0.00 2.71
2241 2499 7.661847 GTGTGAAAGAAAAAGAGAAGGATAGGA 59.338 37.037 0.00 0.00 0.00 2.94
2242 2500 7.360438 CGTGTGAAAGAAAAAGAGAAGGATAGG 60.360 40.741 0.00 0.00 0.00 2.57
2244 2502 6.426937 CCGTGTGAAAGAAAAAGAGAAGGATA 59.573 38.462 0.00 0.00 0.00 2.59
2245 2503 5.239525 CCGTGTGAAAGAAAAAGAGAAGGAT 59.760 40.000 0.00 0.00 0.00 3.24
2246 2504 4.574828 CCGTGTGAAAGAAAAAGAGAAGGA 59.425 41.667 0.00 0.00 0.00 3.36
2248 2506 4.335594 ACCCGTGTGAAAGAAAAAGAGAAG 59.664 41.667 0.00 0.00 0.00 2.85
2249 2507 4.266714 ACCCGTGTGAAAGAAAAAGAGAA 58.733 39.130 0.00 0.00 0.00 2.87
2250 2508 3.881220 ACCCGTGTGAAAGAAAAAGAGA 58.119 40.909 0.00 0.00 0.00 3.10
2251 2509 4.573201 TGTACCCGTGTGAAAGAAAAAGAG 59.427 41.667 0.00 0.00 0.00 2.85
2253 2511 4.886247 TGTACCCGTGTGAAAGAAAAAG 57.114 40.909 0.00 0.00 0.00 2.27
2257 2515 3.547054 ACTTGTACCCGTGTGAAAGAA 57.453 42.857 2.44 0.00 0.00 2.52
2258 2516 3.547054 AACTTGTACCCGTGTGAAAGA 57.453 42.857 2.44 0.00 0.00 2.52
2259 2517 4.992319 TCATAACTTGTACCCGTGTGAAAG 59.008 41.667 0.00 0.00 0.00 2.62
2261 2519 4.202233 TGTCATAACTTGTACCCGTGTGAA 60.202 41.667 0.00 0.00 0.00 3.18
2262 2520 3.321396 TGTCATAACTTGTACCCGTGTGA 59.679 43.478 0.00 0.00 0.00 3.58
2263 2521 3.430895 GTGTCATAACTTGTACCCGTGTG 59.569 47.826 0.00 0.00 0.00 3.82
2264 2522 3.069872 TGTGTCATAACTTGTACCCGTGT 59.930 43.478 0.00 0.00 0.00 4.49
2265 2523 3.655486 TGTGTCATAACTTGTACCCGTG 58.345 45.455 0.00 0.00 0.00 4.94
2266 2524 4.546829 ATGTGTCATAACTTGTACCCGT 57.453 40.909 0.00 0.00 0.00 5.28
2267 2525 4.932799 TGAATGTGTCATAACTTGTACCCG 59.067 41.667 0.00 0.00 0.00 5.28
2268 2526 5.938125 AGTGAATGTGTCATAACTTGTACCC 59.062 40.000 0.00 0.00 38.90 3.69
2269 2527 6.092259 GGAGTGAATGTGTCATAACTTGTACC 59.908 42.308 0.00 0.00 38.90 3.34
2270 2528 6.092259 GGGAGTGAATGTGTCATAACTTGTAC 59.908 42.308 0.00 0.00 38.90 2.90
2271 2529 6.013725 AGGGAGTGAATGTGTCATAACTTGTA 60.014 38.462 0.00 0.00 38.90 2.41
2272 2530 5.003804 GGGAGTGAATGTGTCATAACTTGT 58.996 41.667 0.00 0.00 38.90 3.16
2273 2531 5.248640 AGGGAGTGAATGTGTCATAACTTG 58.751 41.667 0.00 0.00 38.90 3.16
2274 2532 5.491982 GAGGGAGTGAATGTGTCATAACTT 58.508 41.667 0.00 0.00 38.90 2.66
2275 2533 4.080863 GGAGGGAGTGAATGTGTCATAACT 60.081 45.833 0.00 0.00 38.90 2.24
2277 2535 4.080919 CAGGAGGGAGTGAATGTGTCATAA 60.081 45.833 0.00 0.00 38.90 1.90
2279 2537 2.238144 CAGGAGGGAGTGAATGTGTCAT 59.762 50.000 0.00 0.00 38.90 3.06
2281 2539 1.625818 ACAGGAGGGAGTGAATGTGTC 59.374 52.381 0.00 0.00 0.00 3.67
2284 2542 1.280457 GGACAGGAGGGAGTGAATGT 58.720 55.000 0.00 0.00 0.00 2.71
2285 2543 1.279496 TGGACAGGAGGGAGTGAATG 58.721 55.000 0.00 0.00 0.00 2.67
2287 2545 1.056660 GTTGGACAGGAGGGAGTGAA 58.943 55.000 0.00 0.00 0.00 3.18
2288 2546 0.836400 GGTTGGACAGGAGGGAGTGA 60.836 60.000 0.00 0.00 0.00 3.41
2289 2547 1.127567 TGGTTGGACAGGAGGGAGTG 61.128 60.000 0.00 0.00 0.00 3.51
2294 2552 2.065899 TTTGTTGGTTGGACAGGAGG 57.934 50.000 0.00 0.00 0.00 4.30
2299 2557 3.099905 TGATGGTTTTGTTGGTTGGACA 58.900 40.909 0.00 0.00 0.00 4.02
2300 2558 3.810310 TGATGGTTTTGTTGGTTGGAC 57.190 42.857 0.00 0.00 0.00 4.02
2302 2560 7.742556 ATAAAATGATGGTTTTGTTGGTTGG 57.257 32.000 0.00 0.00 33.62 3.77
2307 2565 7.094848 GGGGTGAATAAAATGATGGTTTTGTTG 60.095 37.037 0.02 0.00 34.11 3.33
2310 2568 6.471146 TGGGGTGAATAAAATGATGGTTTTG 58.529 36.000 0.00 0.00 33.62 2.44
2311 2569 6.694445 TGGGGTGAATAAAATGATGGTTTT 57.306 33.333 0.00 0.00 35.60 2.43
2313 2571 5.963253 TCATGGGGTGAATAAAATGATGGTT 59.037 36.000 0.00 0.00 32.78 3.67
2316 2574 6.468333 TGTCATGGGGTGAATAAAATGATG 57.532 37.500 0.00 0.00 38.90 3.07
2317 2575 7.679732 ATTGTCATGGGGTGAATAAAATGAT 57.320 32.000 0.00 0.00 38.90 2.45
2318 2576 7.493499 AATTGTCATGGGGTGAATAAAATGA 57.507 32.000 0.00 0.00 38.90 2.57
2319 2577 8.564509 AAAATTGTCATGGGGTGAATAAAATG 57.435 30.769 0.00 0.00 38.90 2.32
2322 2580 9.883142 GATTAAAATTGTCATGGGGTGAATAAA 57.117 29.630 0.00 0.00 38.90 1.40
2324 2582 8.601047 TGATTAAAATTGTCATGGGGTGAATA 57.399 30.769 0.00 0.00 38.90 1.75
2325 2583 7.493499 TGATTAAAATTGTCATGGGGTGAAT 57.507 32.000 0.00 0.00 38.90 2.57
2326 2584 6.924913 TGATTAAAATTGTCATGGGGTGAA 57.075 33.333 0.00 0.00 38.90 3.18
2327 2585 7.493499 AATGATTAAAATTGTCATGGGGTGA 57.507 32.000 0.00 0.00 33.19 4.02
2328 2586 9.835389 ATAAATGATTAAAATTGTCATGGGGTG 57.165 29.630 0.00 0.00 33.19 4.61
2394 2712 6.096846 AGGTCTTGGCGCTATTAATTCAAAAT 59.903 34.615 7.64 0.00 0.00 1.82
2396 2714 4.947388 AGGTCTTGGCGCTATTAATTCAAA 59.053 37.500 7.64 0.00 0.00 2.69
2398 2716 4.150897 AGGTCTTGGCGCTATTAATTCA 57.849 40.909 7.64 0.00 0.00 2.57
2399 2717 5.500645 AAAGGTCTTGGCGCTATTAATTC 57.499 39.130 7.64 0.00 0.00 2.17
2401 2719 5.925509 TCTAAAGGTCTTGGCGCTATTAAT 58.074 37.500 7.64 0.00 0.00 1.40
2404 2722 3.906720 TCTAAAGGTCTTGGCGCTATT 57.093 42.857 7.64 0.00 0.00 1.73
2406 2724 2.300723 TGTTCTAAAGGTCTTGGCGCTA 59.699 45.455 7.64 0.00 0.00 4.26
2407 2725 1.071699 TGTTCTAAAGGTCTTGGCGCT 59.928 47.619 7.64 0.00 0.00 5.92
2408 2726 1.519408 TGTTCTAAAGGTCTTGGCGC 58.481 50.000 0.00 0.00 0.00 6.53
2409 2727 3.186613 GTCTTGTTCTAAAGGTCTTGGCG 59.813 47.826 0.00 0.00 0.00 5.69
2410 2728 3.502595 GGTCTTGTTCTAAAGGTCTTGGC 59.497 47.826 0.00 0.00 0.00 4.52
2411 2729 4.714632 TGGTCTTGTTCTAAAGGTCTTGG 58.285 43.478 0.00 0.00 0.00 3.61
2412 2730 6.712547 AGATTGGTCTTGTTCTAAAGGTCTTG 59.287 38.462 0.00 0.00 0.00 3.02
2413 2731 6.842676 AGATTGGTCTTGTTCTAAAGGTCTT 58.157 36.000 0.00 0.00 0.00 3.01
2414 2732 6.441088 AGATTGGTCTTGTTCTAAAGGTCT 57.559 37.500 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.