Multiple sequence alignment - TraesCS7A01G437700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G437700 chr7A 100.000 4119 0 0 1 4119 632376921 632381039 0.000000e+00 7607.0
1 TraesCS7A01G437700 chr7A 87.727 440 41 10 1750 2180 86052474 86052039 6.150000e-138 501.0
2 TraesCS7A01G437700 chr7A 82.867 572 68 24 1750 2301 86071888 86071327 1.720000e-133 486.0
3 TraesCS7A01G437700 chr7A 88.161 397 42 3 1750 2144 86074076 86073683 6.230000e-128 468.0
4 TraesCS7A01G437700 chr7A 82.877 438 50 15 1750 2165 86112319 86111885 1.810000e-98 370.0
5 TraesCS7A01G437700 chr7A 98.039 51 1 0 3442 3492 556768017 556768067 5.670000e-14 89.8
6 TraesCS7A01G437700 chr7A 91.837 49 3 1 3 51 692911065 692911112 2.660000e-07 67.6
7 TraesCS7A01G437700 chr7D 86.426 1746 108 50 1751 3442 548604151 548605821 0.000000e+00 1792.0
8 TraesCS7A01G437700 chr7D 88.656 811 61 13 721 1515 548603220 548604015 0.000000e+00 959.0
9 TraesCS7A01G437700 chr7D 88.011 709 44 15 3 708 548564487 548565157 0.000000e+00 800.0
10 TraesCS7A01G437700 chr7D 83.514 461 52 13 1743 2180 85026612 85026153 3.830000e-110 409.0
11 TraesCS7A01G437700 chr7D 79.299 314 27 16 3572 3867 548606074 548606367 7.030000e-43 185.0
12 TraesCS7A01G437700 chr7D 100.000 39 0 0 1 39 632404645 632404607 5.710000e-09 73.1
13 TraesCS7A01G437700 chr7D 100.000 29 0 0 3866 3894 46759388 46759360 2.000000e-03 54.7
14 TraesCS7A01G437700 chr7B 89.610 1155 73 21 2313 3442 591704169 591705301 0.000000e+00 1424.0
15 TraesCS7A01G437700 chr7B 87.177 1006 85 14 532 1515 591702575 591703558 0.000000e+00 1103.0
16 TraesCS7A01G437700 chr7B 85.042 595 65 11 1 583 591690997 591691579 5.930000e-163 584.0
17 TraesCS7A01G437700 chr7B 92.462 398 23 3 1703 2096 591703658 591704052 2.780000e-156 562.0
18 TraesCS7A01G437700 chr7B 86.925 413 38 7 1767 2177 34614440 34614042 2.260000e-122 449.0
19 TraesCS7A01G437700 chr7B 90.244 328 15 7 3525 3845 591705373 591705690 2.960000e-111 412.0
20 TraesCS7A01G437700 chr7B 89.302 215 12 4 3916 4119 591705690 591705904 4.080000e-65 259.0
21 TraesCS7A01G437700 chr7B 96.154 52 2 0 3441 3492 718351052 718351103 7.340000e-13 86.1
22 TraesCS7A01G437700 chr7B 100.000 39 0 0 1 39 744567952 744567914 5.710000e-09 73.1
23 TraesCS7A01G437700 chr6D 86.687 323 38 5 1845 2166 87466079 87465761 1.820000e-93 353.0
24 TraesCS7A01G437700 chr6D 90.741 54 0 3 532 584 11072846 11072895 2.660000e-07 67.6
25 TraesCS7A01G437700 chr5A 79.137 139 23 3 543 681 395881074 395881206 1.580000e-14 91.6
26 TraesCS7A01G437700 chr1D 96.296 54 1 1 3444 3497 68449168 68449116 2.040000e-13 87.9
27 TraesCS7A01G437700 chr1D 100.000 29 0 0 3866 3894 280718959 280718987 2.000000e-03 54.7
28 TraesCS7A01G437700 chr1B 94.643 56 2 1 3442 3496 188791904 188791959 7.340000e-13 86.1
29 TraesCS7A01G437700 chr1A 94.643 56 2 1 3442 3497 66895581 66895527 7.340000e-13 86.1
30 TraesCS7A01G437700 chr1A 100.000 29 0 0 3866 3894 352872414 352872442 2.000000e-03 54.7
31 TraesCS7A01G437700 chr5D 90.625 64 2 3 3442 3505 370941331 370941272 9.490000e-12 82.4
32 TraesCS7A01G437700 chr5D 92.727 55 2 2 3442 3496 431293781 431293833 1.230000e-10 78.7
33 TraesCS7A01G437700 chr5D 97.561 41 1 0 1 41 538675116 538675076 2.050000e-08 71.3
34 TraesCS7A01G437700 chr5D 77.586 116 16 6 562 674 301647825 301647717 1.240000e-05 62.1
35 TraesCS7A01G437700 chr4A 89.394 66 4 3 3443 3507 679159155 679159218 3.410000e-11 80.5
36 TraesCS7A01G437700 chr2A 85.714 77 10 1 563 638 52456859 52456783 3.410000e-11 80.5
37 TraesCS7A01G437700 chr2A 100.000 39 0 0 1 39 203256203 203256241 5.710000e-09 73.1
38 TraesCS7A01G437700 chr5B 88.235 68 4 1 3866 3929 491099528 491099595 1.230000e-10 78.7
39 TraesCS7A01G437700 chr5B 100.000 29 0 0 3866 3894 298680811 298680839 2.000000e-03 54.7
40 TraesCS7A01G437700 chr3D 87.324 71 5 3 3442 3510 61804568 61804636 1.230000e-10 78.7
41 TraesCS7A01G437700 chr3D 100.000 39 0 0 1 39 454504157 454504195 5.710000e-09 73.1
42 TraesCS7A01G437700 chr6A 97.500 40 1 0 1 40 506233718 506233679 7.390000e-08 69.4
43 TraesCS7A01G437700 chr6A 100.000 29 0 0 3866 3894 569998912 569998884 2.000000e-03 54.7
44 TraesCS7A01G437700 chr2D 100.000 36 0 0 1 36 448447236 448447271 2.660000e-07 67.6
45 TraesCS7A01G437700 chr2D 100.000 29 0 0 3866 3894 467971426 467971398 2.000000e-03 54.7
46 TraesCS7A01G437700 chr3B 96.970 33 1 0 454 486 794935582 794935550 5.750000e-04 56.5
47 TraesCS7A01G437700 chr6B 100.000 29 0 0 3865 3893 560192914 560192886 2.000000e-03 54.7
48 TraesCS7A01G437700 chr4D 96.875 32 1 0 3863 3894 301005864 301005895 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G437700 chr7A 632376921 632381039 4118 False 7607.000000 7607 100.000000 1 4119 1 chr7A.!!$F2 4118
1 TraesCS7A01G437700 chr7A 86071327 86074076 2749 True 477.000000 486 85.514000 1750 2301 2 chr7A.!!$R3 551
2 TraesCS7A01G437700 chr7D 548603220 548606367 3147 False 978.666667 1792 84.793667 721 3867 3 chr7D.!!$F2 3146
3 TraesCS7A01G437700 chr7D 548564487 548565157 670 False 800.000000 800 88.011000 3 708 1 chr7D.!!$F1 705
4 TraesCS7A01G437700 chr7B 591702575 591705904 3329 False 752.000000 1424 89.759000 532 4119 5 chr7B.!!$F3 3587
5 TraesCS7A01G437700 chr7B 591690997 591691579 582 False 584.000000 584 85.042000 1 583 1 chr7B.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 999 0.036952 CCATCACGAACAGCTGGTCT 60.037 55.0 28.35 13.44 0.00 3.85 F
981 1004 0.039074 ACGAACAGCTGGTCTCGAAG 60.039 55.0 29.92 18.42 35.47 3.79 F
1815 3629 0.098728 GATGATGCCCAAACGAACGG 59.901 55.0 0.00 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2945 4834 0.033504 ACTGTTGCGTCCTTCGATGT 59.966 50.0 0.00 0.0 42.86 3.06 R
2948 4837 0.878523 CCAACTGTTGCGTCCTTCGA 60.879 55.0 14.94 0.0 42.86 3.71 R
3468 5373 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.0 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 150 0.178944 GGTTGGGTTTAAGGGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
156 167 1.884235 GCTGGATAGCCCACATGTAC 58.116 55.000 0.00 0.00 44.33 2.90
174 187 3.979497 AAGGCCGGTTTGAGGGGG 61.979 66.667 1.90 0.00 0.00 5.40
217 230 1.595357 GACGGGTCACTAACAGGGG 59.405 63.158 0.00 0.00 0.00 4.79
224 237 1.819632 CACTAACAGGGGCATCCGC 60.820 63.158 0.00 0.00 41.52 5.54
246 259 2.423577 CGGACGTGAAGGGAGAATTTT 58.576 47.619 0.00 0.00 0.00 1.82
248 261 3.370061 CGGACGTGAAGGGAGAATTTTAC 59.630 47.826 0.00 0.00 0.00 2.01
257 270 2.026542 GGGAGAATTTTACGGGTCTGGT 60.027 50.000 0.00 0.00 0.00 4.00
282 295 1.467342 GATGCTCTTACGGGCGTTTTT 59.533 47.619 0.00 0.00 0.00 1.94
296 309 3.436359 GGCGTTTTTCTACGGAATGGTTA 59.564 43.478 0.00 0.00 41.65 2.85
312 325 4.600692 TGGTTATACGAGATGATGTGGG 57.399 45.455 0.00 0.00 0.00 4.61
331 344 1.674651 GGGAACTGAAAGGGCGGTC 60.675 63.158 0.00 0.00 39.30 4.79
369 382 3.190874 CGACTAAATTCTGAGGGAGTGC 58.809 50.000 0.00 0.00 0.00 4.40
407 420 6.644347 TGAGATTAAGAGTGAGGATTTGGAC 58.356 40.000 0.00 0.00 0.00 4.02
412 425 3.698289 AGAGTGAGGATTTGGACGTAGA 58.302 45.455 0.00 0.00 0.00 2.59
413 426 4.282496 AGAGTGAGGATTTGGACGTAGAT 58.718 43.478 0.00 0.00 0.00 1.98
414 427 5.446860 AGAGTGAGGATTTGGACGTAGATA 58.553 41.667 0.00 0.00 0.00 1.98
415 428 5.299782 AGAGTGAGGATTTGGACGTAGATAC 59.700 44.000 0.00 0.00 0.00 2.24
416 429 4.341520 AGTGAGGATTTGGACGTAGATACC 59.658 45.833 0.00 0.00 0.00 2.73
424 438 1.335810 GGACGTAGATACCGTGCATGA 59.664 52.381 7.72 0.00 44.65 3.07
487 501 2.353889 CTCAAATGAGCTCGGGTGAATG 59.646 50.000 9.64 1.51 35.13 2.67
492 506 1.837439 TGAGCTCGGGTGAATGGTTAT 59.163 47.619 9.64 0.00 0.00 1.89
493 507 3.035363 TGAGCTCGGGTGAATGGTTATA 58.965 45.455 9.64 0.00 0.00 0.98
503 517 7.343316 TCGGGTGAATGGTTATAAATCCAAAAT 59.657 33.333 0.00 0.00 37.27 1.82
555 570 4.686191 AAATTGGCATTTGTGGAAGTCA 57.314 36.364 0.00 0.00 30.89 3.41
607 623 7.183580 TGCTTTTGAAAATAACATTTTCGGG 57.816 32.000 15.77 9.11 40.31 5.14
646 663 0.324275 GGCCAGGGCTTCCACAAATA 60.324 55.000 10.60 0.00 41.60 1.40
657 674 5.505654 GGCTTCCACAAATATCATTACACGG 60.506 44.000 0.00 0.00 0.00 4.94
737 758 7.485418 TTTTGTTCTATTTTACTCTGCGTCA 57.515 32.000 0.00 0.00 0.00 4.35
739 760 4.625742 TGTTCTATTTTACTCTGCGTCAGC 59.374 41.667 2.45 0.00 45.41 4.26
753 774 1.067199 GTCAGCCTTGCATTTTCGCG 61.067 55.000 0.00 0.00 33.35 5.87
758 779 1.981254 CCTTGCATTTTCGCGACAAT 58.019 45.000 14.47 14.47 33.35 2.71
767 789 2.892373 TTCGCGACAATTAGCTTTGG 57.108 45.000 9.15 0.00 0.00 3.28
792 814 4.400529 AAAAACATGTCCCCACAACTTC 57.599 40.909 0.00 0.00 35.64 3.01
801 823 0.388649 CCCACAACTTCGTCTCTCCG 60.389 60.000 0.00 0.00 0.00 4.63
802 824 0.596577 CCACAACTTCGTCTCTCCGA 59.403 55.000 0.00 0.00 34.52 4.55
927 949 2.097038 CAGCGCCGTCTTCTTCCAG 61.097 63.158 2.29 0.00 0.00 3.86
976 999 0.036952 CCATCACGAACAGCTGGTCT 60.037 55.000 28.35 13.44 0.00 3.85
977 1000 1.354040 CATCACGAACAGCTGGTCTC 58.646 55.000 28.35 15.16 0.00 3.36
978 1001 0.109086 ATCACGAACAGCTGGTCTCG 60.109 55.000 28.35 26.24 36.64 4.04
979 1002 1.170290 TCACGAACAGCTGGTCTCGA 61.170 55.000 29.92 22.84 35.47 4.04
980 1003 0.318699 CACGAACAGCTGGTCTCGAA 60.319 55.000 29.92 0.00 35.47 3.71
981 1004 0.039074 ACGAACAGCTGGTCTCGAAG 60.039 55.000 29.92 18.42 35.47 3.79
982 1005 0.241213 CGAACAGCTGGTCTCGAAGA 59.759 55.000 28.35 0.00 34.27 2.87
1041 1064 2.198183 GAAGCCGCTCTTCTCTCCT 58.802 57.895 0.00 0.00 45.99 3.69
1042 1065 0.179113 GAAGCCGCTCTTCTCTCCTG 60.179 60.000 0.00 0.00 45.99 3.86
1106 1129 1.894466 CATCCATGGCAAGGTTGTCAA 59.106 47.619 6.96 0.00 46.95 3.18
1107 1130 2.079170 TCCATGGCAAGGTTGTCAAA 57.921 45.000 6.96 0.00 46.95 2.69
1110 1133 2.564062 CCATGGCAAGGTTGTCAAAGAT 59.436 45.455 0.00 0.00 46.95 2.40
1142 1165 4.222124 TCCTCATTCTTGGTCTTTAGGC 57.778 45.455 0.00 0.00 0.00 3.93
1182 1205 2.373169 TGGACTGGCTTTCTTGATCTGT 59.627 45.455 0.00 0.00 0.00 3.41
1198 1221 3.857549 TCTGTCTGTTTCTCTGATCCG 57.142 47.619 0.00 0.00 0.00 4.18
1206 1229 1.045350 TTCTCTGATCCGCTCCCCTG 61.045 60.000 0.00 0.00 0.00 4.45
1213 1236 4.148825 CCGCTCCCCTGTTCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
1226 1249 1.067846 GTTCCTCGGATTTTGTTGCCC 60.068 52.381 0.00 0.00 0.00 5.36
1328 1351 4.842531 TCCATCCATTGTCTGCTTCTTA 57.157 40.909 0.00 0.00 0.00 2.10
1351 1374 6.765915 ATGCTTTAGTTCTGGATTTCTTCC 57.234 37.500 0.00 0.00 45.69 3.46
1352 1375 5.880901 TGCTTTAGTTCTGGATTTCTTCCT 58.119 37.500 0.00 0.00 45.68 3.36
1360 1383 8.517062 AGTTCTGGATTTCTTCCTATTCATTG 57.483 34.615 0.00 0.00 45.68 2.82
1362 1385 8.619546 GTTCTGGATTTCTTCCTATTCATTGAG 58.380 37.037 0.00 0.00 45.68 3.02
1363 1386 6.769822 TCTGGATTTCTTCCTATTCATTGAGC 59.230 38.462 0.00 0.00 45.68 4.26
1387 1410 4.093998 GTCTGCTCCATTGTCATGTTACTG 59.906 45.833 0.00 0.00 0.00 2.74
1404 1427 2.519013 ACTGCTGATTTCTTGTTCCCC 58.481 47.619 0.00 0.00 0.00 4.81
1407 1430 2.290896 TGCTGATTTCTTGTTCCCCGAT 60.291 45.455 0.00 0.00 0.00 4.18
1408 1431 2.755103 GCTGATTTCTTGTTCCCCGATT 59.245 45.455 0.00 0.00 0.00 3.34
1409 1432 3.193479 GCTGATTTCTTGTTCCCCGATTT 59.807 43.478 0.00 0.00 0.00 2.17
1410 1433 4.321974 GCTGATTTCTTGTTCCCCGATTTT 60.322 41.667 0.00 0.00 0.00 1.82
1411 1434 5.783111 CTGATTTCTTGTTCCCCGATTTTT 58.217 37.500 0.00 0.00 0.00 1.94
1476 1514 3.555966 ACTTGGAAAAGGTCAACCAGAG 58.444 45.455 1.33 0.00 38.89 3.35
1515 1553 4.137543 AGACCAACTTCTCGAAAATGCTT 58.862 39.130 0.00 0.00 0.00 3.91
1516 1554 4.214332 AGACCAACTTCTCGAAAATGCTTC 59.786 41.667 0.00 0.00 0.00 3.86
1518 1556 3.366374 CCAACTTCTCGAAAATGCTTCCC 60.366 47.826 0.00 0.00 0.00 3.97
1520 1558 0.802494 TTCTCGAAAATGCTTCCCGC 59.198 50.000 0.00 0.00 39.77 6.13
1552 1590 6.438327 AAAAATTCTCGAAAATGCTCGTTG 57.562 33.333 0.00 0.00 39.84 4.10
1561 1599 1.026718 AATGCTCGTTGGGTGCTAGC 61.027 55.000 8.10 8.10 36.15 3.42
1562 1600 3.188786 GCTCGTTGGGTGCTAGCG 61.189 66.667 10.77 0.00 32.48 4.26
1586 1624 3.743714 TGGAATCCCAACCACAGTG 57.256 52.632 0.00 0.00 40.09 3.66
1587 1625 0.112218 TGGAATCCCAACCACAGTGG 59.888 55.000 18.93 18.93 40.09 4.00
1589 1627 1.203001 GGAATCCCAACCACAGTGGAA 60.203 52.381 27.39 6.24 40.96 3.53
1590 1628 2.162681 GAATCCCAACCACAGTGGAAG 58.837 52.381 27.39 16.64 40.96 3.46
1591 1629 0.251341 ATCCCAACCACAGTGGAAGC 60.251 55.000 27.39 0.00 40.96 3.86
1592 1630 1.903404 CCCAACCACAGTGGAAGCC 60.903 63.158 27.39 0.00 40.96 4.35
1593 1631 2.260869 CCAACCACAGTGGAAGCCG 61.261 63.158 27.39 8.77 40.96 5.52
1595 1633 1.525995 AACCACAGTGGAAGCCGTG 60.526 57.895 27.39 0.00 40.96 4.94
1596 1634 2.669569 CCACAGTGGAAGCCGTGG 60.670 66.667 15.35 0.00 40.96 4.94
1597 1635 3.357079 CACAGTGGAAGCCGTGGC 61.357 66.667 1.67 1.67 42.33 5.01
1610 1648 1.384076 GCCGTGGCGAAAATAAAAACG 59.616 47.619 0.00 0.00 0.00 3.60
1619 1657 6.620253 GCGAAAATAAAAACGCCTAAATGA 57.380 33.333 0.00 0.00 44.27 2.57
1747 1786 1.273781 CCCCCAATGGATTTTCCCTGT 60.274 52.381 0.00 0.00 35.03 4.00
1748 1787 1.832998 CCCCAATGGATTTTCCCTGTG 59.167 52.381 0.00 0.00 35.03 3.66
1749 1788 2.559478 CCCCAATGGATTTTCCCTGTGA 60.559 50.000 0.00 0.00 35.03 3.58
1750 1789 3.377573 CCCAATGGATTTTCCCTGTGAT 58.622 45.455 0.00 0.00 35.03 3.06
1751 1790 4.545678 CCCAATGGATTTTCCCTGTGATA 58.454 43.478 0.00 0.00 35.03 2.15
1753 1792 5.203528 CCAATGGATTTTCCCTGTGATACT 58.796 41.667 0.00 0.00 35.03 2.12
1815 3629 0.098728 GATGATGCCCAAACGAACGG 59.901 55.000 0.00 0.00 0.00 4.44
1851 3669 2.125106 GCCCTAGTGAAGCACGGG 60.125 66.667 6.26 6.26 39.64 5.28
1914 3737 3.075641 GGGAGGTGGACGAGGGAC 61.076 72.222 0.00 0.00 0.00 4.46
1931 3754 2.552373 GGGACATATAAAAGGAGGGGCG 60.552 54.545 0.00 0.00 0.00 6.13
2023 3846 7.744733 TCAGTTTAATATCTGATATGTGGGCA 58.255 34.615 10.76 0.00 36.04 5.36
2073 3896 1.276140 TTGTGGGGGAGGGATAACCG 61.276 60.000 0.00 0.00 46.96 4.44
2076 3899 2.380285 GGGGGAGGGATAACCGCAA 61.380 63.158 0.00 0.00 46.96 4.85
2092 3918 4.565179 AATGGCTTGCCATTGGGT 57.435 50.000 31.55 13.65 38.74 4.51
2099 3925 0.251742 CTTGCCATTGGGTCCCTTGA 60.252 55.000 10.00 0.00 36.17 3.02
2186 4025 7.154656 ACTTCACATTTCCCTAAAAGAATTGC 58.845 34.615 0.00 0.00 31.08 3.56
2196 4035 9.665719 TTCCCTAAAAGAATTGCCATATTTTTC 57.334 29.630 0.00 0.00 0.00 2.29
2198 4037 9.101655 CCCTAAAAGAATTGCCATATTTTTCTG 57.898 33.333 0.00 0.00 0.00 3.02
2199 4038 8.606602 CCTAAAAGAATTGCCATATTTTTCTGC 58.393 33.333 0.00 0.00 0.00 4.26
2201 4040 7.605410 AAAGAATTGCCATATTTTTCTGCTG 57.395 32.000 0.00 0.00 0.00 4.41
2202 4041 6.290294 AGAATTGCCATATTTTTCTGCTGT 57.710 33.333 0.00 0.00 0.00 4.40
2204 4043 3.235157 TGCCATATTTTTCTGCTGTGC 57.765 42.857 0.00 0.00 0.00 4.57
2243 4085 0.455410 TGACACAGCTTGTTGCAACC 59.545 50.000 26.14 11.44 45.94 3.77
2268 4111 2.109431 CCATTCGGGCAGTCATTGG 58.891 57.895 0.00 0.00 0.00 3.16
2287 4130 5.570234 TTGGGTTTCTGAACTTGTTGTAC 57.430 39.130 0.00 0.00 36.03 2.90
2301 4144 2.293122 TGTTGTACATGCAGCAAAGGTC 59.707 45.455 0.00 0.00 0.00 3.85
2312 4155 6.100404 TGCAGCAAAGGTCAAATTAAGAAT 57.900 33.333 0.00 0.00 0.00 2.40
2354 4198 1.270907 CCTAGAGCCCTGAACACTGT 58.729 55.000 0.00 0.00 0.00 3.55
2387 4233 1.656652 TGCTTCGCTGGCTCTATTTC 58.343 50.000 0.00 0.00 0.00 2.17
2388 4234 1.208052 TGCTTCGCTGGCTCTATTTCT 59.792 47.619 0.00 0.00 0.00 2.52
2389 4235 1.864082 GCTTCGCTGGCTCTATTTCTC 59.136 52.381 0.00 0.00 0.00 2.87
2390 4236 2.482839 GCTTCGCTGGCTCTATTTCTCT 60.483 50.000 0.00 0.00 0.00 3.10
2391 4237 3.791245 CTTCGCTGGCTCTATTTCTCTT 58.209 45.455 0.00 0.00 0.00 2.85
2392 4238 4.737946 GCTTCGCTGGCTCTATTTCTCTTA 60.738 45.833 0.00 0.00 0.00 2.10
2395 4241 5.131067 TCGCTGGCTCTATTTCTCTTACTA 58.869 41.667 0.00 0.00 0.00 1.82
2397 4243 6.265649 TCGCTGGCTCTATTTCTCTTACTAAT 59.734 38.462 0.00 0.00 0.00 1.73
2411 4257 8.762481 TCTCTTACTAATTATGCCTACAGACA 57.238 34.615 0.00 0.00 0.00 3.41
2487 4336 9.219603 TGAATAAAGTTTAGTGAATCACAGGAG 57.780 33.333 16.38 0.00 36.74 3.69
2488 4337 8.567285 AATAAAGTTTAGTGAATCACAGGAGG 57.433 34.615 16.38 0.00 36.74 4.30
2489 4338 5.825593 AAGTTTAGTGAATCACAGGAGGA 57.174 39.130 16.38 0.00 36.74 3.71
2494 4343 4.550076 AGTGAATCACAGGAGGAAGAAG 57.450 45.455 16.38 0.00 36.74 2.85
2587 4448 6.462323 CACGTTTTCTTTTCTTGCAAATGTTG 59.538 34.615 0.00 0.00 0.00 3.33
2588 4449 6.147000 ACGTTTTCTTTTCTTGCAAATGTTGT 59.853 30.769 0.00 0.00 0.00 3.32
2589 4450 7.329717 ACGTTTTCTTTTCTTGCAAATGTTGTA 59.670 29.630 0.00 0.00 0.00 2.41
2590 4451 7.630606 CGTTTTCTTTTCTTGCAAATGTTGTAC 59.369 33.333 0.00 0.00 0.00 2.90
2632 4521 5.352569 CCTCAGTAATCACACTAGCCTTTTG 59.647 44.000 0.00 0.00 0.00 2.44
2635 4524 6.770785 TCAGTAATCACACTAGCCTTTTGTTT 59.229 34.615 0.00 0.00 0.00 2.83
2636 4525 7.284489 TCAGTAATCACACTAGCCTTTTGTTTT 59.716 33.333 0.00 0.00 0.00 2.43
2679 4568 8.494433 AGTTCCATGATAACTTATTGCCTCTTA 58.506 33.333 7.40 0.00 33.39 2.10
2743 4632 0.771127 ACTTACACACCTGGCATGGT 59.229 50.000 0.00 3.20 41.77 3.55
2760 4649 5.105392 GGCATGGTTTTCAAAGTGATCCATA 60.105 40.000 0.00 0.00 33.97 2.74
2774 4663 6.738635 AGTGATCCATATGAAATGGGCATAT 58.261 36.000 3.65 0.00 38.99 1.78
2775 4664 7.875311 AGTGATCCATATGAAATGGGCATATA 58.125 34.615 3.65 0.00 36.95 0.86
2776 4665 7.776969 AGTGATCCATATGAAATGGGCATATAC 59.223 37.037 3.65 0.00 36.95 1.47
2777 4666 7.776969 GTGATCCATATGAAATGGGCATATACT 59.223 37.037 3.65 0.00 36.95 2.12
2779 4668 9.851686 GATCCATATGAAATGGGCATATACTAA 57.148 33.333 3.65 0.00 36.95 2.24
2780 4669 9.857656 ATCCATATGAAATGGGCATATACTAAG 57.142 33.333 3.65 0.00 36.95 2.18
2781 4670 8.835734 TCCATATGAAATGGGCATATACTAAGT 58.164 33.333 3.65 0.00 36.95 2.24
2782 4671 9.466497 CCATATGAAATGGGCATATACTAAGTT 57.534 33.333 3.65 0.00 36.95 2.66
2801 4690 9.391006 ACTAAGTTAACTGATGAGTTGTTCAAA 57.609 29.630 9.34 0.00 42.66 2.69
2851 4740 4.512914 GCCTCTGGGGATGCCACC 62.513 72.222 5.30 0.00 37.23 4.61
2945 4834 0.744874 GGACTATGTGCCTCGCAGTA 59.255 55.000 0.00 0.00 40.08 2.74
2948 4837 1.757118 ACTATGTGCCTCGCAGTACAT 59.243 47.619 11.61 11.61 40.08 2.29
2959 4848 0.457853 GCAGTACATCGAAGGACGCA 60.458 55.000 12.66 0.00 42.26 5.24
2975 4864 2.714259 GCAACAGTTGGTGGCAGTA 58.286 52.632 15.28 0.00 46.35 2.74
3249 5140 6.319141 AGGTTTCTTGATGTAGCTTGAAAC 57.681 37.500 0.00 0.00 41.12 2.78
3250 5141 6.064717 AGGTTTCTTGATGTAGCTTGAAACT 58.935 36.000 13.55 1.54 41.39 2.66
3251 5142 6.547510 AGGTTTCTTGATGTAGCTTGAAACTT 59.452 34.615 13.55 5.97 41.39 2.66
3252 5143 6.638468 GGTTTCTTGATGTAGCTTGAAACTTG 59.362 38.462 13.55 0.00 41.39 3.16
3253 5144 7.417612 GTTTCTTGATGTAGCTTGAAACTTGA 58.582 34.615 0.00 0.00 39.70 3.02
3254 5145 7.566760 TTCTTGATGTAGCTTGAAACTTGAA 57.433 32.000 0.00 0.00 0.00 2.69
3255 5146 7.566760 TCTTGATGTAGCTTGAAACTTGAAA 57.433 32.000 0.00 0.00 0.00 2.69
3297 5188 5.816777 CCCTACATATTGCAAATTTGTTGGG 59.183 40.000 27.72 27.72 43.46 4.12
3329 5220 0.957395 CTGGCCTGCCTGTAACACAG 60.957 60.000 9.97 0.00 45.53 3.66
3399 5304 2.161410 TCCGCTTCCAATCAATTGTTCG 59.839 45.455 5.13 0.00 36.06 3.95
3403 5308 4.406943 GCTTCCAATCAATTGTTCGAGAC 58.593 43.478 5.13 0.00 36.06 3.36
3443 5348 4.974645 TGGTTGTTCCAAGTGATCTACT 57.025 40.909 0.00 0.00 44.12 2.57
3445 5350 6.037786 TGGTTGTTCCAAGTGATCTACTAG 57.962 41.667 0.00 0.00 44.12 2.57
3446 5351 5.542635 TGGTTGTTCCAAGTGATCTACTAGT 59.457 40.000 0.00 0.00 44.12 2.57
3447 5352 5.869888 GGTTGTTCCAAGTGATCTACTAGTG 59.130 44.000 5.39 0.00 39.18 2.74
3448 5353 6.456501 GTTGTTCCAAGTGATCTACTAGTGT 58.543 40.000 5.39 0.00 39.18 3.55
3449 5354 7.309621 GGTTGTTCCAAGTGATCTACTAGTGTA 60.310 40.741 5.39 0.00 39.18 2.90
3450 5355 7.770366 TGTTCCAAGTGATCTACTAGTGTAA 57.230 36.000 5.39 0.00 39.18 2.41
3451 5356 8.185506 TGTTCCAAGTGATCTACTAGTGTAAA 57.814 34.615 5.39 0.00 39.18 2.01
3452 5357 8.644216 TGTTCCAAGTGATCTACTAGTGTAAAA 58.356 33.333 5.39 0.00 39.18 1.52
3453 5358 9.485206 GTTCCAAGTGATCTACTAGTGTAAAAA 57.515 33.333 5.39 0.00 39.18 1.94
3475 5380 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
3476 5381 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
3477 5382 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
3478 5383 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
3479 5384 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3480 5385 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3481 5386 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3482 5387 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3483 5388 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3538 5474 5.190528 ACATGGATCCCAGTATAAGCTATGG 59.809 44.000 9.90 0.00 36.75 2.74
3561 5497 5.587844 GGATAATAATATGCCACCTCTGCTG 59.412 44.000 0.00 0.00 0.00 4.41
3626 5709 4.521130 TGTTCTGAGTGTCGCTTTATCT 57.479 40.909 0.00 0.00 0.00 1.98
3652 5739 5.282436 TCTAGGATAGAATCAGGCTCCAT 57.718 43.478 0.00 0.00 46.47 3.41
3657 5744 4.323104 GGATAGAATCAGGCTCCATGGTAC 60.323 50.000 12.58 4.85 0.00 3.34
3697 5784 8.644216 ACATACTTCATGTACCGTCCATAAATA 58.356 33.333 0.00 0.00 46.34 1.40
3867 5959 4.511082 GGTGTCATACGACTAGAGACCTAC 59.489 50.000 0.00 0.00 41.16 3.18
3868 5960 5.358922 GTGTCATACGACTAGAGACCTACT 58.641 45.833 0.00 0.00 43.06 2.57
3869 5961 6.462207 GGTGTCATACGACTAGAGACCTACTA 60.462 46.154 0.00 0.00 41.16 1.82
3870 5962 6.420604 GTGTCATACGACTAGAGACCTACTAC 59.579 46.154 0.00 0.00 43.06 2.73
3871 5963 5.925969 GTCATACGACTAGAGACCTACTACC 59.074 48.000 0.00 0.00 39.22 3.18
3872 5964 5.837979 TCATACGACTAGAGACCTACTACCT 59.162 44.000 0.00 0.00 0.00 3.08
3873 5965 4.670896 ACGACTAGAGACCTACTACCTC 57.329 50.000 0.00 0.00 0.00 3.85
3874 5966 3.387699 ACGACTAGAGACCTACTACCTCC 59.612 52.174 0.00 0.00 0.00 4.30
3875 5967 3.387374 CGACTAGAGACCTACTACCTCCA 59.613 52.174 0.00 0.00 0.00 3.86
3876 5968 4.040706 CGACTAGAGACCTACTACCTCCAT 59.959 50.000 0.00 0.00 0.00 3.41
3877 5969 5.455040 CGACTAGAGACCTACTACCTCCATT 60.455 48.000 0.00 0.00 0.00 3.16
3878 5970 5.944135 ACTAGAGACCTACTACCTCCATTC 58.056 45.833 0.00 0.00 0.00 2.67
3879 5971 4.187506 AGAGACCTACTACCTCCATTCC 57.812 50.000 0.00 0.00 0.00 3.01
3880 5972 3.794971 AGAGACCTACTACCTCCATTCCT 59.205 47.826 0.00 0.00 0.00 3.36
3881 5973 4.982956 AGAGACCTACTACCTCCATTCCTA 59.017 45.833 0.00 0.00 0.00 2.94
3882 5974 5.435707 AGAGACCTACTACCTCCATTCCTAA 59.564 44.000 0.00 0.00 0.00 2.69
3883 5975 6.068379 AGAGACCTACTACCTCCATTCCTAAA 60.068 42.308 0.00 0.00 0.00 1.85
3884 5976 6.694611 AGACCTACTACCTCCATTCCTAAAT 58.305 40.000 0.00 0.00 0.00 1.40
3885 5977 7.834046 AGACCTACTACCTCCATTCCTAAATA 58.166 38.462 0.00 0.00 0.00 1.40
3886 5978 8.465971 AGACCTACTACCTCCATTCCTAAATAT 58.534 37.037 0.00 0.00 0.00 1.28
3887 5979 9.765295 GACCTACTACCTCCATTCCTAAATATA 57.235 37.037 0.00 0.00 0.00 0.86
3901 5993 9.740710 ATTCCTAAATATAAGATGTAACTGCCC 57.259 33.333 0.00 0.00 0.00 5.36
3902 5994 7.686434 TCCTAAATATAAGATGTAACTGCCCC 58.314 38.462 0.00 0.00 0.00 5.80
3903 5995 7.293771 TCCTAAATATAAGATGTAACTGCCCCA 59.706 37.037 0.00 0.00 0.00 4.96
3904 5996 7.942341 CCTAAATATAAGATGTAACTGCCCCAA 59.058 37.037 0.00 0.00 0.00 4.12
3905 5997 9.520515 CTAAATATAAGATGTAACTGCCCCAAT 57.479 33.333 0.00 0.00 0.00 3.16
3906 5998 7.765695 AATATAAGATGTAACTGCCCCAATG 57.234 36.000 0.00 0.00 0.00 2.82
3907 5999 3.456380 AAGATGTAACTGCCCCAATGT 57.544 42.857 0.00 0.00 0.00 2.71
3908 6000 3.004752 AGATGTAACTGCCCCAATGTC 57.995 47.619 0.00 0.00 0.00 3.06
3909 6001 2.578021 AGATGTAACTGCCCCAATGTCT 59.422 45.455 0.00 0.00 0.00 3.41
3910 6002 2.969821 TGTAACTGCCCCAATGTCTT 57.030 45.000 0.00 0.00 0.00 3.01
3911 6003 4.227300 AGATGTAACTGCCCCAATGTCTTA 59.773 41.667 0.00 0.00 0.00 2.10
3912 6004 4.584638 TGTAACTGCCCCAATGTCTTAT 57.415 40.909 0.00 0.00 0.00 1.73
3913 6005 5.702065 TGTAACTGCCCCAATGTCTTATA 57.298 39.130 0.00 0.00 0.00 0.98
3914 6006 5.680619 TGTAACTGCCCCAATGTCTTATAG 58.319 41.667 0.00 0.00 0.00 1.31
3915 6007 3.864789 ACTGCCCCAATGTCTTATAGG 57.135 47.619 0.00 0.00 0.00 2.57
3916 6008 3.393687 ACTGCCCCAATGTCTTATAGGA 58.606 45.455 0.00 0.00 0.00 2.94
3917 6009 3.785887 ACTGCCCCAATGTCTTATAGGAA 59.214 43.478 0.00 0.00 0.00 3.36
3918 6010 4.416848 ACTGCCCCAATGTCTTATAGGAAT 59.583 41.667 0.00 0.00 0.00 3.01
3919 6011 4.728772 TGCCCCAATGTCTTATAGGAATG 58.271 43.478 0.00 0.00 0.00 2.67
3920 6012 4.082125 GCCCCAATGTCTTATAGGAATGG 58.918 47.826 5.90 5.90 0.00 3.16
3921 6013 4.202567 GCCCCAATGTCTTATAGGAATGGA 60.203 45.833 11.82 0.00 0.00 3.41
3922 6014 5.564550 CCCCAATGTCTTATAGGAATGGAG 58.435 45.833 11.82 0.00 0.00 3.86
3923 6015 5.515534 CCCCAATGTCTTATAGGAATGGAGG 60.516 48.000 11.82 8.68 0.00 4.30
3924 6016 5.073691 CCCAATGTCTTATAGGAATGGAGGT 59.926 44.000 11.82 0.00 0.00 3.85
3925 6017 6.272324 CCCAATGTCTTATAGGAATGGAGGTA 59.728 42.308 11.82 0.00 0.00 3.08
3926 6018 7.390027 CCAATGTCTTATAGGAATGGAGGTAG 58.610 42.308 6.71 0.00 0.00 3.18
3949 6041 7.055667 AGTAGTTGTCAAGAGTGAAATCTGA 57.944 36.000 0.00 0.00 34.87 3.27
3968 6060 6.187125 TCTGAATCACATTAAGAGCAAAGC 57.813 37.500 0.00 0.00 0.00 3.51
4006 6098 8.912988 TGACAAATAGGCTAATTCAATTAAGGG 58.087 33.333 0.00 0.00 0.00 3.95
4034 6133 7.504403 ACAACATTATTGTTTTGGATCCACAA 58.496 30.769 15.91 16.10 43.57 3.33
4035 6134 8.156165 ACAACATTATTGTTTTGGATCCACAAT 58.844 29.630 24.53 24.53 43.57 2.71
4063 6162 3.072476 CTCACCTGGTCACCCCTG 58.928 66.667 0.00 0.00 0.00 4.45
4070 6172 1.895131 CCTGGTCACCCCTGATTTTTG 59.105 52.381 0.00 0.00 34.15 2.44
4092 6194 3.131396 CCGCAGTAGGATGGTAAATCAC 58.869 50.000 0.00 0.00 0.00 3.06
4107 6209 8.023021 TGGTAAATCACTTATGCAGAGATAGT 57.977 34.615 6.86 0.00 32.03 2.12
4111 6213 5.939764 TCACTTATGCAGAGATAGTTGGT 57.060 39.130 6.86 0.00 0.00 3.67
4112 6214 7.603180 ATCACTTATGCAGAGATAGTTGGTA 57.397 36.000 6.86 0.00 31.49 3.25
4115 6217 7.764443 TCACTTATGCAGAGATAGTTGGTAAAC 59.236 37.037 6.86 0.00 36.47 2.01
4116 6218 7.549134 CACTTATGCAGAGATAGTTGGTAAACA 59.451 37.037 6.86 0.00 38.88 2.83
4118 6220 9.113838 CTTATGCAGAGATAGTTGGTAAACAAT 57.886 33.333 0.00 0.00 41.95 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 104 1.365633 GGGCAGATACAGAGAGGCG 59.634 63.158 0.00 0.00 0.00 5.52
139 150 2.172505 CCTTGTACATGTGGGCTATCCA 59.827 50.000 9.11 0.00 44.79 3.41
152 163 0.250553 CCTCAAACCGGCCTTGTACA 60.251 55.000 14.67 0.00 0.00 2.90
156 167 2.676471 CCCCTCAAACCGGCCTTG 60.676 66.667 0.00 5.86 0.00 3.61
175 188 2.781431 AAATGCGACCCAACTCCCCC 62.781 60.000 0.00 0.00 0.00 5.40
176 189 0.898326 AAAATGCGACCCAACTCCCC 60.898 55.000 0.00 0.00 0.00 4.81
177 190 0.526211 GAAAATGCGACCCAACTCCC 59.474 55.000 0.00 0.00 0.00 4.30
178 191 1.068541 GTGAAAATGCGACCCAACTCC 60.069 52.381 0.00 0.00 0.00 3.85
179 192 1.399727 CGTGAAAATGCGACCCAACTC 60.400 52.381 0.00 0.00 0.00 3.01
224 237 1.614241 ATTCTCCCTTCACGTCCGGG 61.614 60.000 0.00 6.94 39.41 5.73
234 247 3.308188 CCAGACCCGTAAAATTCTCCCTT 60.308 47.826 0.00 0.00 0.00 3.95
239 252 4.094830 ACAACCAGACCCGTAAAATTCT 57.905 40.909 0.00 0.00 0.00 2.40
246 259 1.479323 GCATCTACAACCAGACCCGTA 59.521 52.381 0.00 0.00 0.00 4.02
248 261 0.537188 AGCATCTACAACCAGACCCG 59.463 55.000 0.00 0.00 0.00 5.28
282 295 5.999600 TCATCTCGTATAACCATTCCGTAGA 59.000 40.000 0.00 0.00 0.00 2.59
312 325 2.361230 CCGCCCTTTCAGTTCCCC 60.361 66.667 0.00 0.00 0.00 4.81
315 328 0.601841 TTCGACCGCCCTTTCAGTTC 60.602 55.000 0.00 0.00 0.00 3.01
331 344 0.105964 TCGGGCCCTACATGATTTCG 59.894 55.000 22.43 1.13 0.00 3.46
369 382 6.864342 TCTTAATCTCAACTTAACCTCTCCG 58.136 40.000 0.00 0.00 0.00 4.63
407 420 4.328983 AGTTTTTCATGCACGGTATCTACG 59.671 41.667 0.00 0.00 37.36 3.51
412 425 3.568007 ACACAGTTTTTCATGCACGGTAT 59.432 39.130 0.00 0.00 0.00 2.73
413 426 2.946329 ACACAGTTTTTCATGCACGGTA 59.054 40.909 0.00 0.00 0.00 4.02
414 427 1.748493 ACACAGTTTTTCATGCACGGT 59.252 42.857 0.00 0.00 0.00 4.83
415 428 2.490328 ACACAGTTTTTCATGCACGG 57.510 45.000 0.00 0.00 0.00 4.94
416 429 6.370593 ACTTATACACAGTTTTTCATGCACG 58.629 36.000 0.00 0.00 0.00 5.34
528 543 4.646572 TCCACAAATGCCAATTTTTACCC 58.353 39.130 0.00 0.00 33.59 3.69
538 553 1.894466 CCATGACTTCCACAAATGCCA 59.106 47.619 0.00 0.00 0.00 4.92
646 663 4.277174 TGCAAAGTTTCACCGTGTAATGAT 59.723 37.500 0.00 0.00 0.00 2.45
712 729 7.921787 TGACGCAGAGTAAAATAGAACAAAAA 58.078 30.769 0.00 0.00 0.00 1.94
713 730 7.485418 TGACGCAGAGTAAAATAGAACAAAA 57.515 32.000 0.00 0.00 0.00 2.44
714 731 6.347402 GCTGACGCAGAGTAAAATAGAACAAA 60.347 38.462 10.46 0.00 32.44 2.83
719 740 3.447586 AGGCTGACGCAGAGTAAAATAGA 59.552 43.478 10.46 0.00 38.10 1.98
737 758 1.210155 GTCGCGAAAATGCAAGGCT 59.790 52.632 12.06 0.00 34.15 4.58
739 760 1.981254 ATTGTCGCGAAAATGCAAGG 58.019 45.000 23.38 0.00 34.15 3.61
927 949 1.596895 GGGGAGAGATATCGACGGGC 61.597 65.000 0.00 0.00 0.00 6.13
976 999 2.676822 ACCAGGCGCTCTCTTCGA 60.677 61.111 7.64 0.00 0.00 3.71
977 1000 1.377366 TAGACCAGGCGCTCTCTTCG 61.377 60.000 7.64 0.00 0.00 3.79
978 1001 1.000717 GATAGACCAGGCGCTCTCTTC 60.001 57.143 7.64 1.54 0.00 2.87
979 1002 1.036707 GATAGACCAGGCGCTCTCTT 58.963 55.000 7.64 0.00 0.00 2.85
980 1003 0.106469 TGATAGACCAGGCGCTCTCT 60.106 55.000 7.64 4.66 0.00 3.10
981 1004 0.747255 TTGATAGACCAGGCGCTCTC 59.253 55.000 7.64 0.00 0.00 3.20
982 1005 1.069823 CATTGATAGACCAGGCGCTCT 59.930 52.381 7.64 4.49 0.00 4.09
1041 1064 1.216444 GTGGAGCGAGACATCTGCA 59.784 57.895 0.00 0.00 0.00 4.41
1042 1065 1.875813 CGTGGAGCGAGACATCTGC 60.876 63.158 0.00 0.00 44.77 4.26
1068 1091 1.371558 GACGACCCAGCAGTCCTTT 59.628 57.895 0.00 0.00 32.91 3.11
1132 1155 0.323957 ACCAACGGAGCCTAAAGACC 59.676 55.000 0.00 0.00 0.00 3.85
1142 1165 2.101582 CCAGATCTCCTAACCAACGGAG 59.898 54.545 0.00 0.00 46.52 4.63
1182 1205 1.478510 GGAGCGGATCAGAGAAACAGA 59.521 52.381 0.00 0.00 0.00 3.41
1198 1221 1.627297 AATCCGAGGAACAGGGGAGC 61.627 60.000 0.00 0.00 30.92 4.70
1206 1229 1.067846 GGGCAACAAAATCCGAGGAAC 60.068 52.381 0.00 0.00 39.74 3.62
1213 1236 1.970640 ACCTGAAGGGCAACAAAATCC 59.029 47.619 0.56 0.00 40.27 3.01
1226 1249 2.029380 TGGTCACATCGTACACCTGAAG 60.029 50.000 0.00 0.00 0.00 3.02
1362 1385 0.376152 CATGACAATGGAGCAGACGC 59.624 55.000 0.00 0.00 38.99 5.19
1363 1386 1.730501 ACATGACAATGGAGCAGACG 58.269 50.000 0.00 0.00 38.19 4.18
1387 1410 1.821216 TCGGGGAACAAGAAATCAGC 58.179 50.000 0.00 0.00 0.00 4.26
1410 1433 8.997323 CCTATGTTGATGCCATTTTAACAAAAA 58.003 29.630 7.04 0.00 35.23 1.94
1411 1434 8.153550 ACCTATGTTGATGCCATTTTAACAAAA 58.846 29.630 7.04 0.00 35.23 2.44
1422 1460 3.931907 AGCTAACCTATGTTGATGCCA 57.068 42.857 0.00 0.00 35.87 4.92
1431 1469 5.128827 TCCCAACTACTGAAGCTAACCTATG 59.871 44.000 0.00 0.00 0.00 2.23
1529 1567 5.402270 CCAACGAGCATTTTCGAGAATTTTT 59.598 36.000 0.00 0.00 43.03 1.94
1530 1568 4.917415 CCAACGAGCATTTTCGAGAATTTT 59.083 37.500 0.00 0.00 43.03 1.82
1531 1569 4.475944 CCAACGAGCATTTTCGAGAATTT 58.524 39.130 0.00 0.00 43.03 1.82
1532 1570 3.119849 CCCAACGAGCATTTTCGAGAATT 60.120 43.478 0.00 0.00 43.03 2.17
1533 1571 2.420022 CCCAACGAGCATTTTCGAGAAT 59.580 45.455 2.12 0.00 43.03 2.40
1534 1572 1.804151 CCCAACGAGCATTTTCGAGAA 59.196 47.619 2.12 0.00 43.03 2.87
1535 1573 1.270625 ACCCAACGAGCATTTTCGAGA 60.271 47.619 2.12 0.00 43.03 4.04
1536 1574 1.135972 CACCCAACGAGCATTTTCGAG 60.136 52.381 2.12 0.00 43.03 4.04
1537 1575 0.871722 CACCCAACGAGCATTTTCGA 59.128 50.000 2.12 0.00 43.03 3.71
1538 1576 0.729140 GCACCCAACGAGCATTTTCG 60.729 55.000 0.00 0.00 45.70 3.46
1539 1577 0.598065 AGCACCCAACGAGCATTTTC 59.402 50.000 0.00 0.00 0.00 2.29
1540 1578 1.812571 CTAGCACCCAACGAGCATTTT 59.187 47.619 0.00 0.00 0.00 1.82
1541 1579 1.453155 CTAGCACCCAACGAGCATTT 58.547 50.000 0.00 0.00 0.00 2.32
1542 1580 1.026718 GCTAGCACCCAACGAGCATT 61.027 55.000 10.63 0.00 36.01 3.56
1543 1581 1.450312 GCTAGCACCCAACGAGCAT 60.450 57.895 10.63 0.00 36.01 3.79
1544 1582 2.047274 GCTAGCACCCAACGAGCA 60.047 61.111 10.63 0.00 36.01 4.26
1545 1583 3.188786 CGCTAGCACCCAACGAGC 61.189 66.667 16.45 0.00 33.05 5.03
1546 1584 2.509336 CCGCTAGCACCCAACGAG 60.509 66.667 16.45 0.00 0.00 4.18
1547 1585 2.992689 TCCGCTAGCACCCAACGA 60.993 61.111 16.45 0.00 0.00 3.85
1548 1586 2.509336 CTCCGCTAGCACCCAACG 60.509 66.667 16.45 0.00 0.00 4.10
1549 1587 1.972660 ATCCTCCGCTAGCACCCAAC 61.973 60.000 16.45 0.00 0.00 3.77
1550 1588 1.689233 ATCCTCCGCTAGCACCCAA 60.689 57.895 16.45 0.00 0.00 4.12
1551 1589 2.041922 ATCCTCCGCTAGCACCCA 60.042 61.111 16.45 0.00 0.00 4.51
1552 1590 2.423446 CATCCTCCGCTAGCACCC 59.577 66.667 16.45 0.00 0.00 4.61
1584 1622 1.862602 ATTTTCGCCACGGCTTCCAC 61.863 55.000 6.48 0.00 39.32 4.02
1585 1623 0.321741 TATTTTCGCCACGGCTTCCA 60.322 50.000 6.48 0.00 39.32 3.53
1586 1624 0.806241 TTATTTTCGCCACGGCTTCC 59.194 50.000 6.48 0.00 39.32 3.46
1587 1625 2.622546 TTTATTTTCGCCACGGCTTC 57.377 45.000 6.48 0.00 39.32 3.86
1589 1627 2.668250 GTTTTTATTTTCGCCACGGCT 58.332 42.857 6.48 0.00 39.32 5.52
1590 1628 1.384076 CGTTTTTATTTTCGCCACGGC 59.616 47.619 0.00 0.00 37.85 5.68
1591 1629 1.384076 GCGTTTTTATTTTCGCCACGG 59.616 47.619 0.00 0.00 42.33 4.94
1592 1630 2.736946 GCGTTTTTATTTTCGCCACG 57.263 45.000 0.00 0.00 42.33 4.94
1596 1634 6.620253 TCATTTAGGCGTTTTTATTTTCGC 57.380 33.333 0.00 0.00 46.42 4.70
1695 1733 6.071391 AGGATGACATCATTTAAGCGGTTTTT 60.071 34.615 17.08 0.00 36.57 1.94
1696 1734 5.418840 AGGATGACATCATTTAAGCGGTTTT 59.581 36.000 17.08 0.00 36.57 2.43
1697 1735 4.949856 AGGATGACATCATTTAAGCGGTTT 59.050 37.500 17.08 0.00 36.57 3.27
1699 1737 4.130118 GAGGATGACATCATTTAAGCGGT 58.870 43.478 17.08 0.00 36.57 5.68
1700 1738 3.185188 CGAGGATGACATCATTTAAGCGG 59.815 47.826 17.08 0.00 36.57 5.52
1701 1739 3.363378 GCGAGGATGACATCATTTAAGCG 60.363 47.826 17.08 10.17 36.57 4.68
1704 1742 4.129380 CAGGCGAGGATGACATCATTTAA 58.871 43.478 17.08 0.00 36.57 1.52
1747 1786 1.904771 CTTCCACGGCCCAGTATCA 59.095 57.895 0.00 0.00 0.00 2.15
1748 1787 1.523938 GCTTCCACGGCCCAGTATC 60.524 63.158 0.00 0.00 0.00 2.24
1749 1788 1.635817 ATGCTTCCACGGCCCAGTAT 61.636 55.000 0.00 0.00 0.00 2.12
1750 1789 1.847798 AATGCTTCCACGGCCCAGTA 61.848 55.000 0.00 0.00 0.00 2.74
1751 1790 3.210012 AATGCTTCCACGGCCCAGT 62.210 57.895 0.00 0.00 0.00 4.00
1753 1792 2.676121 CAATGCTTCCACGGCCCA 60.676 61.111 0.00 0.00 0.00 5.36
1815 3629 3.406595 AACCAGCCTATGCGCCTCC 62.407 63.158 4.18 0.00 44.33 4.30
1851 3669 0.320508 AACGAAAGAACGGGGAGAGC 60.321 55.000 0.00 0.00 37.61 4.09
1857 3675 3.429881 GTGGTACTAAACGAAAGAACGGG 59.570 47.826 0.00 0.00 37.61 5.28
1914 3737 1.271926 CCCCGCCCCTCCTTTTATATG 60.272 57.143 0.00 0.00 0.00 1.78
2023 3846 5.906113 TTTAATATCGTTGTGGGCACATT 57.094 34.783 0.00 0.00 41.52 2.71
2092 3918 2.583441 CCAGGCGACACTCAAGGGA 61.583 63.158 0.00 0.00 0.00 4.20
2167 4006 9.617523 AAATATGGCAATTCTTTTAGGGAAATG 57.382 29.630 0.00 0.00 0.00 2.32
2198 4037 1.727213 GCGAATTTGACTCTGCACAGC 60.727 52.381 0.00 0.00 0.00 4.40
2199 4038 1.135859 GGCGAATTTGACTCTGCACAG 60.136 52.381 0.00 0.00 0.00 3.66
2201 4040 1.135859 CAGGCGAATTTGACTCTGCAC 60.136 52.381 0.00 0.00 0.00 4.57
2202 4041 1.159285 CAGGCGAATTTGACTCTGCA 58.841 50.000 0.00 0.00 0.00 4.41
2204 4043 3.250762 TCAAACAGGCGAATTTGACTCTG 59.749 43.478 0.00 4.10 39.34 3.35
2206 4045 3.896648 TCAAACAGGCGAATTTGACTC 57.103 42.857 0.00 0.00 39.34 3.36
2231 4070 0.508213 GCGATTTGGTTGCAACAAGC 59.492 50.000 29.55 18.00 45.96 4.01
2268 4111 4.976116 GCATGTACAACAAGTTCAGAAACC 59.024 41.667 0.00 0.00 35.92 3.27
2287 4130 5.472148 TCTTAATTTGACCTTTGCTGCATG 58.528 37.500 1.84 0.00 0.00 4.06
2301 4144 8.920665 TGAAAAACATACCGCATTCTTAATTTG 58.079 29.630 0.00 0.00 0.00 2.32
2312 4155 3.376540 GCACTTTGAAAAACATACCGCA 58.623 40.909 0.00 0.00 0.00 5.69
2354 4198 2.560504 CGAAGCAATAGTGGGTATGCA 58.439 47.619 0.00 0.00 0.00 3.96
2387 4233 9.250624 GTTGTCTGTAGGCATAATTAGTAAGAG 57.749 37.037 0.00 0.00 0.00 2.85
2388 4234 8.755028 TGTTGTCTGTAGGCATAATTAGTAAGA 58.245 33.333 0.00 0.00 0.00 2.10
2389 4235 8.818057 GTGTTGTCTGTAGGCATAATTAGTAAG 58.182 37.037 0.00 0.00 0.00 2.34
2390 4236 8.537016 AGTGTTGTCTGTAGGCATAATTAGTAA 58.463 33.333 0.00 0.00 0.00 2.24
2391 4237 8.074613 AGTGTTGTCTGTAGGCATAATTAGTA 57.925 34.615 0.00 0.00 0.00 1.82
2392 4238 6.947464 AGTGTTGTCTGTAGGCATAATTAGT 58.053 36.000 0.00 0.00 0.00 2.24
2409 4255 9.975218 AGGGAAACAAAGATATAATAGTGTTGT 57.025 29.630 0.00 0.00 30.06 3.32
2521 4382 2.414785 CGCGGATTTTTGGGAGGGG 61.415 63.158 0.00 0.00 0.00 4.79
2523 4384 1.654023 GGACGCGGATTTTTGGGAGG 61.654 60.000 12.47 0.00 0.00 4.30
2524 4385 0.958382 TGGACGCGGATTTTTGGGAG 60.958 55.000 12.47 0.00 0.00 4.30
2601 4490 3.324846 AGTGTGATTACTGAGGCTTGACA 59.675 43.478 0.00 0.00 0.00 3.58
2635 4524 7.225784 TGGAACTAATGCAGCTATTGAAAAA 57.774 32.000 0.00 0.00 0.00 1.94
2636 4525 6.832520 TGGAACTAATGCAGCTATTGAAAA 57.167 33.333 0.00 0.00 0.00 2.29
2643 4532 6.830912 AGTTATCATGGAACTAATGCAGCTA 58.169 36.000 10.99 0.00 35.36 3.32
2743 4632 8.259411 CCCATTTCATATGGATCACTTTGAAAA 58.741 33.333 13.55 0.00 41.64 2.29
2775 4664 8.958119 TTGAACAACTCATCAGTTAACTTAGT 57.042 30.769 5.07 4.77 41.24 2.24
2860 4749 2.401766 GCTGTGGCCCACATCTTCG 61.402 63.158 18.64 6.35 43.71 3.79
2940 4829 0.457853 TGCGTCCTTCGATGTACTGC 60.458 55.000 0.00 0.00 42.86 4.40
2945 4834 0.033504 ACTGTTGCGTCCTTCGATGT 59.966 50.000 0.00 0.00 42.86 3.06
2948 4837 0.878523 CCAACTGTTGCGTCCTTCGA 60.879 55.000 14.94 0.00 42.86 3.71
2959 4848 2.622942 CACATTACTGCCACCAACTGTT 59.377 45.455 0.00 0.00 0.00 3.16
2975 4864 1.005097 TCTGGAATCAGGCAGCACATT 59.995 47.619 0.00 0.00 41.23 2.71
2986 4875 3.009363 TCCTCTGCATTGTTCTGGAATCA 59.991 43.478 0.00 0.00 0.00 2.57
3249 5140 6.195165 GCGAAATATGCCTAGTTCTTTCAAG 58.805 40.000 7.45 0.00 31.37 3.02
3250 5141 6.119144 GCGAAATATGCCTAGTTCTTTCAA 57.881 37.500 7.45 0.00 31.37 2.69
3251 5142 5.734855 GCGAAATATGCCTAGTTCTTTCA 57.265 39.130 7.45 0.00 31.37 2.69
3297 5188 1.377856 GGCCAGCCTCCAAGAAGAC 60.378 63.158 0.00 0.00 0.00 3.01
3329 5220 2.297315 TCTCAGTGTCACAGTCATGGTC 59.703 50.000 5.62 0.00 0.00 4.02
3338 5229 5.302823 CCTATCCATACATCTCAGTGTCACA 59.697 44.000 5.62 0.00 33.62 3.58
3379 5284 2.161410 TCGAACAATTGATTGGAAGCGG 59.839 45.455 13.59 0.00 41.96 5.52
3399 5304 6.019479 CCATCACGCAACTAAGATAAAGTCTC 60.019 42.308 0.00 0.00 35.67 3.36
3403 5308 6.128282 ACAACCATCACGCAACTAAGATAAAG 60.128 38.462 0.00 0.00 0.00 1.85
3450 5355 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3451 5356 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
3452 5357 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
3453 5358 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
3454 5359 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
3455 5360 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
3456 5361 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3457 5362 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3458 5363 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3459 5364 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3460 5365 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3461 5366 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3462 5367 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3463 5368 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3464 5369 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3465 5370 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3466 5371 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3467 5372 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
3468 5373 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3469 5374 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
3470 5375 2.433662 AAGTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3471 5376 5.008514 GTGAATAAGTACTACTCCCTCCGTC 59.991 48.000 0.00 0.00 0.00 4.79
3472 5377 4.886489 GTGAATAAGTACTACTCCCTCCGT 59.114 45.833 0.00 0.00 0.00 4.69
3473 5378 5.131784 AGTGAATAAGTACTACTCCCTCCG 58.868 45.833 0.00 0.00 0.00 4.63
3474 5379 6.606395 TCAAGTGAATAAGTACTACTCCCTCC 59.394 42.308 0.00 0.00 0.00 4.30
3475 5380 7.122353 TGTCAAGTGAATAAGTACTACTCCCTC 59.878 40.741 0.00 0.00 0.00 4.30
3476 5381 6.952358 TGTCAAGTGAATAAGTACTACTCCCT 59.048 38.462 0.00 0.00 0.00 4.20
3477 5382 7.034397 GTGTCAAGTGAATAAGTACTACTCCC 58.966 42.308 0.00 0.00 0.00 4.30
3478 5383 7.600065 TGTGTCAAGTGAATAAGTACTACTCC 58.400 38.462 0.00 0.00 0.00 3.85
3538 5474 5.587844 CCAGCAGAGGTGGCATATTATTATC 59.412 44.000 1.95 0.00 44.28 1.75
3561 5497 5.023533 TGTTCTGATAGTATGTCCAAGCC 57.976 43.478 0.00 0.00 0.00 4.35
3597 5673 3.130633 CGACACTCAGAACATTGTTCCA 58.869 45.455 22.70 11.19 0.00 3.53
3598 5674 2.096218 GCGACACTCAGAACATTGTTCC 60.096 50.000 22.70 7.56 0.00 3.62
3626 5709 6.191315 GGAGCCTGATTCTATCCTAGATACA 58.809 44.000 0.00 0.00 34.22 2.29
3711 5798 8.137437 ACTGTTGTATGATCAAGAACAAAAAGG 58.863 33.333 17.95 12.48 33.92 3.11
3712 5799 9.520204 AACTGTTGTATGATCAAGAACAAAAAG 57.480 29.630 17.95 18.54 33.92 2.27
3743 5830 2.047830 TCAGCTCTGATGCATGGAGAT 58.952 47.619 22.81 16.89 34.14 2.75
3858 5950 3.794971 AGGAATGGAGGTAGTAGGTCTCT 59.205 47.826 0.00 0.00 0.00 3.10
3875 5967 9.740710 GGGCAGTTACATCTTATATTTAGGAAT 57.259 33.333 0.00 0.00 0.00 3.01
3876 5968 8.161425 GGGGCAGTTACATCTTATATTTAGGAA 58.839 37.037 0.00 0.00 0.00 3.36
3877 5969 7.293771 TGGGGCAGTTACATCTTATATTTAGGA 59.706 37.037 0.00 0.00 0.00 2.94
3878 5970 7.458397 TGGGGCAGTTACATCTTATATTTAGG 58.542 38.462 0.00 0.00 0.00 2.69
3879 5971 8.918202 TTGGGGCAGTTACATCTTATATTTAG 57.082 34.615 0.00 0.00 0.00 1.85
3880 5972 9.295825 CATTGGGGCAGTTACATCTTATATTTA 57.704 33.333 0.00 0.00 0.00 1.40
3881 5973 7.784550 ACATTGGGGCAGTTACATCTTATATTT 59.215 33.333 0.00 0.00 0.00 1.40
3882 5974 7.297614 ACATTGGGGCAGTTACATCTTATATT 58.702 34.615 0.00 0.00 0.00 1.28
3883 5975 6.852404 ACATTGGGGCAGTTACATCTTATAT 58.148 36.000 0.00 0.00 0.00 0.86
3884 5976 6.101150 AGACATTGGGGCAGTTACATCTTATA 59.899 38.462 0.00 0.00 0.00 0.98
3885 5977 5.103940 AGACATTGGGGCAGTTACATCTTAT 60.104 40.000 0.00 0.00 0.00 1.73
3886 5978 4.227300 AGACATTGGGGCAGTTACATCTTA 59.773 41.667 0.00 0.00 0.00 2.10
3887 5979 3.010584 AGACATTGGGGCAGTTACATCTT 59.989 43.478 0.00 0.00 0.00 2.40
3888 5980 2.578021 AGACATTGGGGCAGTTACATCT 59.422 45.455 0.00 0.00 0.00 2.90
3889 5981 3.004752 AGACATTGGGGCAGTTACATC 57.995 47.619 0.00 0.00 0.00 3.06
3890 5982 3.456380 AAGACATTGGGGCAGTTACAT 57.544 42.857 0.00 0.00 0.00 2.29
3891 5983 2.969821 AAGACATTGGGGCAGTTACA 57.030 45.000 0.00 0.00 0.00 2.41
3892 5984 5.063880 CCTATAAGACATTGGGGCAGTTAC 58.936 45.833 0.00 0.00 0.00 2.50
3893 5985 4.972568 TCCTATAAGACATTGGGGCAGTTA 59.027 41.667 0.00 0.00 0.00 2.24
3894 5986 3.785887 TCCTATAAGACATTGGGGCAGTT 59.214 43.478 0.00 0.00 0.00 3.16
3895 5987 3.393687 TCCTATAAGACATTGGGGCAGT 58.606 45.455 0.00 0.00 0.00 4.40
3896 5988 4.437682 TTCCTATAAGACATTGGGGCAG 57.562 45.455 0.00 0.00 0.00 4.85
3897 5989 4.447616 CCATTCCTATAAGACATTGGGGCA 60.448 45.833 0.00 0.00 0.00 5.36
3898 5990 4.082125 CCATTCCTATAAGACATTGGGGC 58.918 47.826 0.00 0.00 0.00 5.80
3899 5991 5.515534 CCTCCATTCCTATAAGACATTGGGG 60.516 48.000 0.00 0.00 0.00 4.96
3900 5992 5.073691 ACCTCCATTCCTATAAGACATTGGG 59.926 44.000 0.00 0.00 0.00 4.12
3901 5993 6.192970 ACCTCCATTCCTATAAGACATTGG 57.807 41.667 0.00 0.00 0.00 3.16
3902 5994 7.967908 ACTACCTCCATTCCTATAAGACATTG 58.032 38.462 0.00 0.00 0.00 2.82
3903 5995 9.315363 CTACTACCTCCATTCCTATAAGACATT 57.685 37.037 0.00 0.00 0.00 2.71
3904 5996 8.457757 ACTACTACCTCCATTCCTATAAGACAT 58.542 37.037 0.00 0.00 0.00 3.06
3905 5997 7.823635 ACTACTACCTCCATTCCTATAAGACA 58.176 38.462 0.00 0.00 0.00 3.41
3906 5998 8.578151 CAACTACTACCTCCATTCCTATAAGAC 58.422 40.741 0.00 0.00 0.00 3.01
3907 5999 8.287350 ACAACTACTACCTCCATTCCTATAAGA 58.713 37.037 0.00 0.00 0.00 2.10
3908 6000 8.480133 ACAACTACTACCTCCATTCCTATAAG 57.520 38.462 0.00 0.00 0.00 1.73
3909 6001 8.063153 TGACAACTACTACCTCCATTCCTATAA 58.937 37.037 0.00 0.00 0.00 0.98
3910 6002 7.589081 TGACAACTACTACCTCCATTCCTATA 58.411 38.462 0.00 0.00 0.00 1.31
3911 6003 6.441222 TGACAACTACTACCTCCATTCCTAT 58.559 40.000 0.00 0.00 0.00 2.57
3912 6004 5.834460 TGACAACTACTACCTCCATTCCTA 58.166 41.667 0.00 0.00 0.00 2.94
3913 6005 4.684724 TGACAACTACTACCTCCATTCCT 58.315 43.478 0.00 0.00 0.00 3.36
3914 6006 5.187186 TCTTGACAACTACTACCTCCATTCC 59.813 44.000 0.00 0.00 0.00 3.01
3915 6007 6.071278 ACTCTTGACAACTACTACCTCCATTC 60.071 42.308 0.00 0.00 0.00 2.67
3916 6008 5.780793 ACTCTTGACAACTACTACCTCCATT 59.219 40.000 0.00 0.00 0.00 3.16
3917 6009 5.186021 CACTCTTGACAACTACTACCTCCAT 59.814 44.000 0.00 0.00 0.00 3.41
3918 6010 4.523173 CACTCTTGACAACTACTACCTCCA 59.477 45.833 0.00 0.00 0.00 3.86
3919 6011 4.765856 TCACTCTTGACAACTACTACCTCC 59.234 45.833 0.00 0.00 0.00 4.30
3920 6012 5.961396 TCACTCTTGACAACTACTACCTC 57.039 43.478 0.00 0.00 0.00 3.85
3921 6013 6.726490 TTTCACTCTTGACAACTACTACCT 57.274 37.500 0.00 0.00 0.00 3.08
3922 6014 7.329717 CAGATTTCACTCTTGACAACTACTACC 59.670 40.741 0.00 0.00 0.00 3.18
3923 6015 8.082852 TCAGATTTCACTCTTGACAACTACTAC 58.917 37.037 0.00 0.00 0.00 2.73
3924 6016 8.178313 TCAGATTTCACTCTTGACAACTACTA 57.822 34.615 0.00 0.00 0.00 1.82
3925 6017 7.055667 TCAGATTTCACTCTTGACAACTACT 57.944 36.000 0.00 0.00 0.00 2.57
3926 6018 7.715265 TTCAGATTTCACTCTTGACAACTAC 57.285 36.000 0.00 0.00 0.00 2.73
3949 6041 4.726416 CACGCTTTGCTCTTAATGTGATT 58.274 39.130 0.00 0.00 0.00 2.57
3968 6060 3.370978 CCTATTTGTCAGTAAGGTGCACG 59.629 47.826 11.45 0.00 0.00 5.34
3972 6064 7.552687 TGAATTAGCCTATTTGTCAGTAAGGTG 59.447 37.037 0.00 0.00 0.00 4.00
4034 6133 4.210331 GACCAGGTGAGCATTTCCATAAT 58.790 43.478 0.00 0.00 0.00 1.28
4035 6134 3.010027 TGACCAGGTGAGCATTTCCATAA 59.990 43.478 0.00 0.00 0.00 1.90
4063 6162 2.223572 CCATCCTACTGCGGCAAAAATC 60.224 50.000 3.44 0.00 0.00 2.17
4070 6172 2.143925 GATTTACCATCCTACTGCGGC 58.856 52.381 0.00 0.00 0.00 6.53
4092 6194 8.492673 TTGTTTACCAACTATCTCTGCATAAG 57.507 34.615 0.00 0.00 33.58 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.