Multiple sequence alignment - TraesCS7A01G436900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G436900 chr7A 100.000 2641 0 0 1 2641 631962021 631959381 0.000000e+00 4878.0
1 TraesCS7A01G436900 chr7A 94.991 1717 66 14 934 2641 630390127 630391832 0.000000e+00 2676.0
2 TraesCS7A01G436900 chr7A 88.083 772 89 2 934 1705 632588101 632587333 0.000000e+00 913.0
3 TraesCS7A01G436900 chr7A 87.300 811 88 11 899 1709 632908653 632907858 0.000000e+00 913.0
4 TraesCS7A01G436900 chr7A 87.053 811 90 11 899 1709 633037647 633036852 0.000000e+00 902.0
5 TraesCS7A01G436900 chr7A 86.800 750 95 1 946 1695 630035649 630036394 0.000000e+00 833.0
6 TraesCS7A01G436900 chr7A 92.713 494 17 1 377 851 630389636 630390129 0.000000e+00 695.0
7 TraesCS7A01G436900 chr7A 98.143 377 7 0 4 380 3601096 3600720 0.000000e+00 658.0
8 TraesCS7A01G436900 chr7A 87.213 305 17 9 380 662 632909157 632908853 7.050000e-86 327.0
9 TraesCS7A01G436900 chr7A 87.213 305 17 8 380 662 632971710 632971406 7.050000e-86 327.0
10 TraesCS7A01G436900 chr7A 87.213 305 17 8 380 662 633038151 633037847 7.050000e-86 327.0
11 TraesCS7A01G436900 chr7A 86.885 305 18 8 380 662 632588735 632588431 3.280000e-84 322.0
12 TraesCS7A01G436900 chr7A 92.462 199 10 2 655 851 632971369 632971174 2.000000e-71 279.0
13 TraesCS7A01G436900 chr7A 92.462 199 10 2 655 851 633037810 633037615 2.000000e-71 279.0
14 TraesCS7A01G436900 chr7A 91.960 199 11 2 655 851 632908816 632908621 9.310000e-70 274.0
15 TraesCS7A01G436900 chr7A 82.239 259 38 5 404 658 630035229 630035483 1.590000e-52 217.0
16 TraesCS7A01G436900 chr7A 92.500 40 3 0 1787 1826 630036550 630036589 1.020000e-04 58.4
17 TraesCS7A01G436900 chr7B 87.840 773 89 4 934 1705 592361829 592361061 0.000000e+00 902.0
18 TraesCS7A01G436900 chr7B 97.895 380 8 0 1 380 42835238 42835617 0.000000e+00 658.0
19 TraesCS7A01G436900 chr7B 86.047 301 20 8 380 658 592362358 592362058 1.190000e-78 303.0
20 TraesCS7A01G436900 chr7B 91.878 197 13 1 655 851 592362020 592361827 3.350000e-69 272.0
21 TraesCS7A01G436900 chr7B 90.323 62 5 1 1577 1638 591252712 591252772 2.180000e-11 80.5
22 TraesCS7A01G436900 chr7D 86.067 811 96 13 899 1709 548805173 548804380 0.000000e+00 856.0
23 TraesCS7A01G436900 chr7D 85.867 750 101 2 946 1695 546754399 546755143 0.000000e+00 793.0
24 TraesCS7A01G436900 chr7D 82.033 718 125 4 933 1648 548138172 548138887 2.250000e-170 608.0
25 TraesCS7A01G436900 chr7D 89.549 488 23 17 1464 1926 548129991 548129507 6.290000e-166 593.0
26 TraesCS7A01G436900 chr7D 90.848 448 15 9 377 798 548131973 548131526 6.340000e-161 577.0
27 TraesCS7A01G436900 chr7D 87.338 308 17 8 377 662 548805675 548805368 1.510000e-87 333.0
28 TraesCS7A01G436900 chr7D 92.893 197 11 1 655 851 548805334 548805141 1.550000e-72 283.0
29 TraesCS7A01G436900 chr7D 94.030 67 4 0 785 851 548130257 548130191 4.650000e-18 102.0
30 TraesCS7A01G436900 chr5B 97.878 377 8 0 4 380 276822049 276821673 0.000000e+00 652.0
31 TraesCS7A01G436900 chr2A 97.613 377 9 0 4 380 758857189 758856813 0.000000e+00 647.0
32 TraesCS7A01G436900 chr2A 99.119 227 2 0 4 230 619204793 619204567 2.450000e-110 409.0
33 TraesCS7A01G436900 chr2A 92.784 97 5 1 843 939 337719192 337719098 3.540000e-29 139.0
34 TraesCS7A01G436900 chr2A 92.784 97 5 1 843 939 337856479 337856573 3.540000e-29 139.0
35 TraesCS7A01G436900 chr2A 92.784 97 5 1 843 939 337858985 337858891 3.540000e-29 139.0
36 TraesCS7A01G436900 chr1A 96.842 380 12 0 1 380 1680472 1680851 1.030000e-178 636.0
37 TraesCS7A01G436900 chr1A 89.623 106 6 3 841 945 310856374 310856475 2.130000e-26 130.0
38 TraesCS7A01G436900 chr1B 97.319 373 10 0 5 377 512996339 512996711 3.710000e-178 634.0
39 TraesCS7A01G436900 chr4A 96.817 377 12 0 4 380 511020506 511020130 4.800000e-177 630.0
40 TraesCS7A01G436900 chr2D 98.795 83 1 0 856 938 564440701 564440783 5.890000e-32 148.0
41 TraesCS7A01G436900 chr2D 90.385 104 5 4 838 940 201441664 201441565 5.930000e-27 132.0
42 TraesCS7A01G436900 chr6A 93.750 96 4 1 846 941 1090280 1090373 2.740000e-30 143.0
43 TraesCS7A01G436900 chr3D 95.556 90 2 1 849 938 336539179 336539266 2.740000e-30 143.0
44 TraesCS7A01G436900 chrUn 86.614 127 12 4 819 943 42184566 42184443 4.590000e-28 135.0
45 TraesCS7A01G436900 chr4D 89.286 84 7 1 768 851 432765544 432765463 1.290000e-18 104.0
46 TraesCS7A01G436900 chr6B 86.364 88 10 1 768 855 59825853 59825768 7.780000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G436900 chr7A 631959381 631962021 2640 True 4878.000000 4878 100.000000 1 2641 1 chr7A.!!$R2 2640
1 TraesCS7A01G436900 chr7A 630389636 630391832 2196 False 1685.500000 2676 93.852000 377 2641 2 chr7A.!!$F2 2264
2 TraesCS7A01G436900 chr7A 632587333 632588735 1402 True 617.500000 913 87.484000 380 1705 2 chr7A.!!$R3 1325
3 TraesCS7A01G436900 chr7A 632907858 632909157 1299 True 504.666667 913 88.824333 380 1709 3 chr7A.!!$R4 1329
4 TraesCS7A01G436900 chr7A 633036852 633038151 1299 True 502.666667 902 88.909333 380 1709 3 chr7A.!!$R6 1329
5 TraesCS7A01G436900 chr7A 630035229 630036589 1360 False 369.466667 833 87.179667 404 1826 3 chr7A.!!$F1 1422
6 TraesCS7A01G436900 chr7A 632971174 632971710 536 True 303.000000 327 89.837500 380 851 2 chr7A.!!$R5 471
7 TraesCS7A01G436900 chr7B 592361061 592362358 1297 True 492.333333 902 88.588333 380 1705 3 chr7B.!!$R1 1325
8 TraesCS7A01G436900 chr7D 546754399 546755143 744 False 793.000000 793 85.867000 946 1695 1 chr7D.!!$F1 749
9 TraesCS7A01G436900 chr7D 548138172 548138887 715 False 608.000000 608 82.033000 933 1648 1 chr7D.!!$F2 715
10 TraesCS7A01G436900 chr7D 548804380 548805675 1295 True 490.666667 856 88.766000 377 1709 3 chr7D.!!$R2 1332
11 TraesCS7A01G436900 chr7D 548129507 548131973 2466 True 424.000000 593 91.475667 377 1926 3 chr7D.!!$R1 1549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.033699 GAGCTTCCCTTTCCATGGCT 60.034 55.0 6.96 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 3313 0.771127 AGCCCTAGTTCACCAAGCAA 59.229 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.030652 GTTGTCACAAGGCACCGG 58.969 61.111 0.00 0.00 0.00 5.28
18 19 1.525077 GTTGTCACAAGGCACCGGA 60.525 57.895 9.46 0.00 0.00 5.14
19 20 1.227823 TTGTCACAAGGCACCGGAG 60.228 57.895 9.46 0.00 0.00 4.63
20 21 1.978455 TTGTCACAAGGCACCGGAGT 61.978 55.000 9.46 0.00 0.00 3.85
21 22 1.668151 GTCACAAGGCACCGGAGTC 60.668 63.158 9.46 0.00 0.00 3.36
22 23 2.358737 CACAAGGCACCGGAGTCC 60.359 66.667 9.46 6.32 0.00 3.85
23 24 3.637273 ACAAGGCACCGGAGTCCC 61.637 66.667 9.46 1.93 0.00 4.46
24 25 4.410400 CAAGGCACCGGAGTCCCC 62.410 72.222 9.46 0.00 0.00 4.81
25 26 4.658786 AAGGCACCGGAGTCCCCT 62.659 66.667 9.46 0.00 0.00 4.79
26 27 4.658786 AGGCACCGGAGTCCCCTT 62.659 66.667 9.46 0.00 0.00 3.95
27 28 4.097361 GGCACCGGAGTCCCCTTC 62.097 72.222 9.46 0.00 0.00 3.46
28 29 4.097361 GCACCGGAGTCCCCTTCC 62.097 72.222 9.46 0.00 0.00 3.46
29 30 2.606519 CACCGGAGTCCCCTTCCA 60.607 66.667 9.46 0.00 34.24 3.53
30 31 1.995626 CACCGGAGTCCCCTTCCAT 60.996 63.158 9.46 0.00 34.24 3.41
31 32 1.995626 ACCGGAGTCCCCTTCCATG 60.996 63.158 9.46 0.00 34.24 3.66
32 33 2.746375 CCGGAGTCCCCTTCCATGG 61.746 68.421 4.97 4.97 34.24 3.66
33 34 1.995626 CGGAGTCCCCTTCCATGGT 60.996 63.158 12.58 0.00 34.24 3.55
34 35 1.915983 GGAGTCCCCTTCCATGGTC 59.084 63.158 12.58 0.00 34.74 4.02
35 36 0.621862 GGAGTCCCCTTCCATGGTCT 60.622 60.000 12.58 0.44 34.74 3.85
36 37 0.833949 GAGTCCCCTTCCATGGTCTC 59.166 60.000 12.58 6.06 31.41 3.36
37 38 0.419459 AGTCCCCTTCCATGGTCTCT 59.581 55.000 12.58 0.00 0.00 3.10
38 39 0.543749 GTCCCCTTCCATGGTCTCTG 59.456 60.000 12.58 0.00 0.00 3.35
39 40 0.417437 TCCCCTTCCATGGTCTCTGA 59.583 55.000 12.58 1.79 0.00 3.27
40 41 1.203428 TCCCCTTCCATGGTCTCTGAA 60.203 52.381 12.58 0.00 0.00 3.02
41 42 1.065126 CCCCTTCCATGGTCTCTGAAC 60.065 57.143 12.58 0.00 0.00 3.18
42 43 1.630369 CCCTTCCATGGTCTCTGAACA 59.370 52.381 12.58 0.00 32.20 3.18
43 44 2.240667 CCCTTCCATGGTCTCTGAACAT 59.759 50.000 12.58 0.00 41.03 2.71
44 45 3.455910 CCCTTCCATGGTCTCTGAACATA 59.544 47.826 12.58 0.00 37.96 2.29
45 46 4.444022 CCCTTCCATGGTCTCTGAACATAG 60.444 50.000 12.58 0.00 37.96 2.23
46 47 4.163078 CCTTCCATGGTCTCTGAACATAGT 59.837 45.833 12.58 0.00 37.96 2.12
47 48 5.344743 TTCCATGGTCTCTGAACATAGTC 57.655 43.478 12.58 0.00 37.96 2.59
48 49 3.706594 TCCATGGTCTCTGAACATAGTCC 59.293 47.826 12.58 0.00 37.96 3.85
49 50 3.181461 CCATGGTCTCTGAACATAGTCCC 60.181 52.174 2.57 0.00 37.96 4.46
50 51 3.184382 TGGTCTCTGAACATAGTCCCA 57.816 47.619 0.00 0.00 0.00 4.37
51 52 2.832129 TGGTCTCTGAACATAGTCCCAC 59.168 50.000 0.00 0.00 0.00 4.61
52 53 3.100671 GGTCTCTGAACATAGTCCCACT 58.899 50.000 0.00 0.00 0.00 4.00
53 54 3.131400 GGTCTCTGAACATAGTCCCACTC 59.869 52.174 0.00 0.00 0.00 3.51
54 55 3.131400 GTCTCTGAACATAGTCCCACTCC 59.869 52.174 0.00 0.00 0.00 3.85
55 56 3.099905 CTCTGAACATAGTCCCACTCCA 58.900 50.000 0.00 0.00 0.00 3.86
56 57 3.708631 CTCTGAACATAGTCCCACTCCAT 59.291 47.826 0.00 0.00 0.00 3.41
57 58 3.706594 TCTGAACATAGTCCCACTCCATC 59.293 47.826 0.00 0.00 0.00 3.51
58 59 2.771943 TGAACATAGTCCCACTCCATCC 59.228 50.000 0.00 0.00 0.00 3.51
59 60 2.568546 ACATAGTCCCACTCCATCCA 57.431 50.000 0.00 0.00 0.00 3.41
60 61 2.119495 ACATAGTCCCACTCCATCCAC 58.881 52.381 0.00 0.00 0.00 4.02
61 62 2.118679 CATAGTCCCACTCCATCCACA 58.881 52.381 0.00 0.00 0.00 4.17
62 63 1.866015 TAGTCCCACTCCATCCACAG 58.134 55.000 0.00 0.00 0.00 3.66
63 64 1.078143 GTCCCACTCCATCCACAGC 60.078 63.158 0.00 0.00 0.00 4.40
64 65 2.273449 CCCACTCCATCCACAGCC 59.727 66.667 0.00 0.00 0.00 4.85
65 66 2.605607 CCCACTCCATCCACAGCCA 61.606 63.158 0.00 0.00 0.00 4.75
66 67 1.379916 CCACTCCATCCACAGCCAA 59.620 57.895 0.00 0.00 0.00 4.52
67 68 0.962356 CCACTCCATCCACAGCCAAC 60.962 60.000 0.00 0.00 0.00 3.77
68 69 1.003355 ACTCCATCCACAGCCAACG 60.003 57.895 0.00 0.00 0.00 4.10
69 70 2.359850 TCCATCCACAGCCAACGC 60.360 61.111 0.00 0.00 0.00 4.84
70 71 2.672651 CCATCCACAGCCAACGCA 60.673 61.111 0.00 0.00 37.52 5.24
71 72 2.267351 CCATCCACAGCCAACGCAA 61.267 57.895 0.00 0.00 37.52 4.85
73 74 2.629656 ATCCACAGCCAACGCAAGC 61.630 57.895 0.00 0.00 45.62 4.01
74 75 4.688419 CCACAGCCAACGCAAGCG 62.688 66.667 13.50 13.50 46.03 4.68
75 76 3.648982 CACAGCCAACGCAAGCGA 61.649 61.111 22.30 0.00 42.83 4.93
76 77 2.899838 ACAGCCAACGCAAGCGAA 60.900 55.556 22.30 0.00 42.83 4.70
77 78 2.127118 CAGCCAACGCAAGCGAAG 60.127 61.111 22.30 12.12 42.83 3.79
78 79 2.280797 AGCCAACGCAAGCGAAGA 60.281 55.556 22.30 0.00 42.83 2.87
79 80 2.174349 GCCAACGCAAGCGAAGAG 59.826 61.111 22.30 7.70 42.83 2.85
80 81 3.935665 GCCAACGCAAGCGAAGAGC 62.936 63.158 22.30 13.54 42.83 4.09
92 93 2.413837 GCGAAGAGCTCTACCAAAACA 58.586 47.619 18.59 0.00 44.04 2.83
93 94 2.413453 GCGAAGAGCTCTACCAAAACAG 59.587 50.000 18.59 2.20 44.04 3.16
94 95 3.654414 CGAAGAGCTCTACCAAAACAGT 58.346 45.455 18.59 0.00 0.00 3.55
95 96 4.058817 CGAAGAGCTCTACCAAAACAGTT 58.941 43.478 18.59 0.00 0.00 3.16
96 97 4.511826 CGAAGAGCTCTACCAAAACAGTTT 59.488 41.667 18.59 0.00 0.00 2.66
97 98 5.694910 CGAAGAGCTCTACCAAAACAGTTTA 59.305 40.000 18.59 0.00 0.00 2.01
98 99 6.202188 CGAAGAGCTCTACCAAAACAGTTTAA 59.798 38.462 18.59 0.00 0.00 1.52
99 100 7.497925 AAGAGCTCTACCAAAACAGTTTAAG 57.502 36.000 18.59 0.00 0.00 1.85
100 101 6.592870 AGAGCTCTACCAAAACAGTTTAAGT 58.407 36.000 16.50 2.74 0.00 2.24
101 102 6.706716 AGAGCTCTACCAAAACAGTTTAAGTC 59.293 38.462 16.50 0.00 0.00 3.01
102 103 5.763698 AGCTCTACCAAAACAGTTTAAGTCC 59.236 40.000 0.00 0.00 0.00 3.85
103 104 5.763698 GCTCTACCAAAACAGTTTAAGTCCT 59.236 40.000 0.00 0.00 0.00 3.85
104 105 6.262496 GCTCTACCAAAACAGTTTAAGTCCTT 59.738 38.462 0.00 0.00 0.00 3.36
105 106 7.562454 TCTACCAAAACAGTTTAAGTCCTTG 57.438 36.000 0.00 0.00 0.00 3.61
106 107 7.340256 TCTACCAAAACAGTTTAAGTCCTTGA 58.660 34.615 0.00 0.00 0.00 3.02
107 108 7.996644 TCTACCAAAACAGTTTAAGTCCTTGAT 59.003 33.333 0.00 0.00 0.00 2.57
108 109 9.280174 CTACCAAAACAGTTTAAGTCCTTGATA 57.720 33.333 0.00 0.00 0.00 2.15
109 110 7.937649 ACCAAAACAGTTTAAGTCCTTGATAC 58.062 34.615 0.00 0.00 0.00 2.24
110 111 7.013942 ACCAAAACAGTTTAAGTCCTTGATACC 59.986 37.037 0.00 0.00 0.00 2.73
111 112 6.796705 AAACAGTTTAAGTCCTTGATACCG 57.203 37.500 0.00 0.00 0.00 4.02
112 113 5.733620 ACAGTTTAAGTCCTTGATACCGA 57.266 39.130 0.00 0.00 0.00 4.69
113 114 5.721232 ACAGTTTAAGTCCTTGATACCGAG 58.279 41.667 0.00 0.00 0.00 4.63
114 115 5.109903 CAGTTTAAGTCCTTGATACCGAGG 58.890 45.833 0.00 0.00 44.04 4.63
115 116 3.814005 TTAAGTCCTTGATACCGAGGC 57.186 47.619 0.00 0.00 42.66 4.70
116 117 0.831307 AAGTCCTTGATACCGAGGCC 59.169 55.000 0.00 0.00 42.66 5.19
117 118 1.049289 AGTCCTTGATACCGAGGCCC 61.049 60.000 0.00 0.00 42.66 5.80
118 119 1.764854 TCCTTGATACCGAGGCCCC 60.765 63.158 0.00 0.00 42.66 5.80
119 120 2.819284 CCTTGATACCGAGGCCCCC 61.819 68.421 0.00 0.00 37.16 5.40
120 121 2.041430 TTGATACCGAGGCCCCCA 59.959 61.111 0.00 0.00 0.00 4.96
121 122 2.044806 CTTGATACCGAGGCCCCCAG 62.045 65.000 0.00 0.00 0.00 4.45
122 123 2.446036 GATACCGAGGCCCCCAGT 60.446 66.667 0.00 0.00 0.00 4.00
123 124 2.446036 ATACCGAGGCCCCCAGTC 60.446 66.667 0.00 0.00 0.00 3.51
124 125 3.326385 ATACCGAGGCCCCCAGTCA 62.326 63.158 0.00 0.00 0.00 3.41
125 126 2.833151 ATACCGAGGCCCCCAGTCAA 62.833 60.000 0.00 0.00 0.00 3.18
126 127 4.410400 CCGAGGCCCCCAGTCAAC 62.410 72.222 0.00 0.00 0.00 3.18
127 128 3.322466 CGAGGCCCCCAGTCAACT 61.322 66.667 0.00 0.00 0.00 3.16
128 129 2.895424 CGAGGCCCCCAGTCAACTT 61.895 63.158 0.00 0.00 0.00 2.66
129 130 1.002011 GAGGCCCCCAGTCAACTTC 60.002 63.158 0.00 0.00 0.00 3.01
130 131 2.359975 GGCCCCCAGTCAACTTCG 60.360 66.667 0.00 0.00 0.00 3.79
131 132 2.359975 GCCCCCAGTCAACTTCGG 60.360 66.667 0.00 0.00 0.00 4.30
132 133 2.890766 GCCCCCAGTCAACTTCGGA 61.891 63.158 0.00 0.00 0.00 4.55
133 134 1.296715 CCCCCAGTCAACTTCGGAG 59.703 63.158 0.00 0.00 0.00 4.63
134 135 1.376037 CCCCAGTCAACTTCGGAGC 60.376 63.158 0.00 0.00 0.00 4.70
135 136 1.371183 CCCAGTCAACTTCGGAGCA 59.629 57.895 0.00 0.00 0.00 4.26
136 137 0.951040 CCCAGTCAACTTCGGAGCAC 60.951 60.000 0.00 0.00 0.00 4.40
137 138 0.249868 CCAGTCAACTTCGGAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
138 139 0.861837 CAGTCAACTTCGGAGCACAC 59.138 55.000 0.00 0.00 0.00 3.82
139 140 0.464036 AGTCAACTTCGGAGCACACA 59.536 50.000 0.00 0.00 0.00 3.72
140 141 0.582005 GTCAACTTCGGAGCACACAC 59.418 55.000 0.00 0.00 0.00 3.82
141 142 0.464036 TCAACTTCGGAGCACACACT 59.536 50.000 0.00 0.00 0.00 3.55
142 143 1.134521 TCAACTTCGGAGCACACACTT 60.135 47.619 0.00 0.00 0.00 3.16
143 144 1.670811 CAACTTCGGAGCACACACTTT 59.329 47.619 0.00 0.00 0.00 2.66
144 145 2.038387 ACTTCGGAGCACACACTTTT 57.962 45.000 0.00 0.00 0.00 2.27
145 146 2.365582 ACTTCGGAGCACACACTTTTT 58.634 42.857 0.00 0.00 0.00 1.94
161 162 2.079170 TTTTTCCAGGACACCATGCA 57.921 45.000 0.00 0.00 0.00 3.96
162 163 2.307496 TTTTCCAGGACACCATGCAT 57.693 45.000 0.00 0.00 0.00 3.96
163 164 2.307496 TTTCCAGGACACCATGCATT 57.693 45.000 0.00 0.00 0.00 3.56
164 165 2.307496 TTCCAGGACACCATGCATTT 57.693 45.000 0.00 0.00 0.00 2.32
165 166 1.838112 TCCAGGACACCATGCATTTC 58.162 50.000 0.00 0.00 0.00 2.17
166 167 0.819582 CCAGGACACCATGCATTTCC 59.180 55.000 0.00 0.54 0.00 3.13
167 168 0.819582 CAGGACACCATGCATTTCCC 59.180 55.000 0.00 0.00 0.00 3.97
168 169 0.706433 AGGACACCATGCATTTCCCT 59.294 50.000 0.00 0.00 0.00 4.20
169 170 1.106285 GGACACCATGCATTTCCCTC 58.894 55.000 0.00 0.00 0.00 4.30
170 171 1.106285 GACACCATGCATTTCCCTCC 58.894 55.000 0.00 0.00 0.00 4.30
171 172 0.409092 ACACCATGCATTTCCCTCCA 59.591 50.000 0.00 0.00 0.00 3.86
172 173 1.007479 ACACCATGCATTTCCCTCCAT 59.993 47.619 0.00 0.00 0.00 3.41
173 174 1.411246 CACCATGCATTTCCCTCCATG 59.589 52.381 0.00 0.00 35.90 3.66
174 175 1.045407 CCATGCATTTCCCTCCATGG 58.955 55.000 4.97 4.97 45.96 3.66
191 192 3.435186 GGCAACCTCTTCGCCAGC 61.435 66.667 0.00 0.00 45.52 4.85
192 193 3.435186 GCAACCTCTTCGCCAGCC 61.435 66.667 0.00 0.00 0.00 4.85
193 194 2.747855 CAACCTCTTCGCCAGCCC 60.748 66.667 0.00 0.00 0.00 5.19
194 195 3.249189 AACCTCTTCGCCAGCCCA 61.249 61.111 0.00 0.00 0.00 5.36
195 196 3.553095 AACCTCTTCGCCAGCCCAC 62.553 63.158 0.00 0.00 0.00 4.61
196 197 4.020617 CCTCTTCGCCAGCCCACA 62.021 66.667 0.00 0.00 0.00 4.17
197 198 2.032528 CTCTTCGCCAGCCCACAA 59.967 61.111 0.00 0.00 0.00 3.33
198 199 1.600636 CTCTTCGCCAGCCCACAAA 60.601 57.895 0.00 0.00 0.00 2.83
199 200 1.152860 TCTTCGCCAGCCCACAAAA 60.153 52.632 0.00 0.00 0.00 2.44
200 201 0.753479 TCTTCGCCAGCCCACAAAAA 60.753 50.000 0.00 0.00 0.00 1.94
201 202 0.318955 CTTCGCCAGCCCACAAAAAG 60.319 55.000 0.00 0.00 0.00 2.27
202 203 2.356194 CGCCAGCCCACAAAAAGC 60.356 61.111 0.00 0.00 0.00 3.51
203 204 2.031012 GCCAGCCCACAAAAAGCC 59.969 61.111 0.00 0.00 0.00 4.35
204 205 2.743060 CCAGCCCACAAAAAGCCC 59.257 61.111 0.00 0.00 0.00 5.19
205 206 2.743060 CAGCCCACAAAAAGCCCC 59.257 61.111 0.00 0.00 0.00 5.80
206 207 2.917227 AGCCCACAAAAAGCCCCG 60.917 61.111 0.00 0.00 0.00 5.73
207 208 4.680237 GCCCACAAAAAGCCCCGC 62.680 66.667 0.00 0.00 0.00 6.13
208 209 4.002506 CCCACAAAAAGCCCCGCC 62.003 66.667 0.00 0.00 0.00 6.13
209 210 2.917227 CCACAAAAAGCCCCGCCT 60.917 61.111 0.00 0.00 0.00 5.52
210 211 2.650778 CACAAAAAGCCCCGCCTC 59.349 61.111 0.00 0.00 0.00 4.70
211 212 2.197324 ACAAAAAGCCCCGCCTCA 59.803 55.556 0.00 0.00 0.00 3.86
212 213 1.903404 ACAAAAAGCCCCGCCTCAG 60.903 57.895 0.00 0.00 0.00 3.35
213 214 2.991540 AAAAAGCCCCGCCTCAGC 60.992 61.111 0.00 0.00 0.00 4.26
214 215 3.513750 AAAAAGCCCCGCCTCAGCT 62.514 57.895 0.00 0.00 38.88 4.24
216 217 4.729918 AAGCCCCGCCTCAGCTTG 62.730 66.667 0.00 0.00 44.83 4.01
219 220 4.020617 CCCCGCCTCAGCTTGTCA 62.021 66.667 0.00 0.00 36.60 3.58
220 221 2.032528 CCCGCCTCAGCTTGTCAA 59.967 61.111 0.00 0.00 36.60 3.18
221 222 1.377725 CCCGCCTCAGCTTGTCAAT 60.378 57.895 0.00 0.00 36.60 2.57
222 223 1.372087 CCCGCCTCAGCTTGTCAATC 61.372 60.000 0.00 0.00 36.60 2.67
223 224 1.372087 CCGCCTCAGCTTGTCAATCC 61.372 60.000 0.00 0.00 36.60 3.01
224 225 0.392193 CGCCTCAGCTTGTCAATCCT 60.392 55.000 0.00 0.00 36.60 3.24
225 226 1.377536 GCCTCAGCTTGTCAATCCTC 58.622 55.000 0.00 0.00 35.50 3.71
226 227 1.065564 GCCTCAGCTTGTCAATCCTCT 60.066 52.381 0.00 0.00 35.50 3.69
227 228 2.617532 GCCTCAGCTTGTCAATCCTCTT 60.618 50.000 0.00 0.00 35.50 2.85
228 229 3.369892 GCCTCAGCTTGTCAATCCTCTTA 60.370 47.826 0.00 0.00 35.50 2.10
229 230 4.836825 CCTCAGCTTGTCAATCCTCTTAA 58.163 43.478 0.00 0.00 0.00 1.85
230 231 5.435291 CCTCAGCTTGTCAATCCTCTTAAT 58.565 41.667 0.00 0.00 0.00 1.40
231 232 5.296283 CCTCAGCTTGTCAATCCTCTTAATG 59.704 44.000 0.00 0.00 0.00 1.90
232 233 6.053632 TCAGCTTGTCAATCCTCTTAATGA 57.946 37.500 0.00 0.00 0.00 2.57
233 234 6.475504 TCAGCTTGTCAATCCTCTTAATGAA 58.524 36.000 0.00 0.00 0.00 2.57
234 235 6.372659 TCAGCTTGTCAATCCTCTTAATGAAC 59.627 38.462 0.00 0.00 0.00 3.18
235 236 5.649831 AGCTTGTCAATCCTCTTAATGAACC 59.350 40.000 0.00 0.00 0.00 3.62
236 237 5.415701 GCTTGTCAATCCTCTTAATGAACCA 59.584 40.000 0.00 0.00 0.00 3.67
237 238 6.071952 GCTTGTCAATCCTCTTAATGAACCAA 60.072 38.462 0.00 0.00 0.00 3.67
238 239 7.452880 TTGTCAATCCTCTTAATGAACCAAG 57.547 36.000 0.00 0.00 0.00 3.61
239 240 5.415701 TGTCAATCCTCTTAATGAACCAAGC 59.584 40.000 0.00 0.00 0.00 4.01
240 241 5.415701 GTCAATCCTCTTAATGAACCAAGCA 59.584 40.000 0.00 0.00 0.00 3.91
241 242 5.415701 TCAATCCTCTTAATGAACCAAGCAC 59.584 40.000 0.00 0.00 0.00 4.40
242 243 4.640771 TCCTCTTAATGAACCAAGCACT 57.359 40.909 0.00 0.00 0.00 4.40
243 244 4.579869 TCCTCTTAATGAACCAAGCACTC 58.420 43.478 0.00 0.00 0.00 3.51
244 245 4.041567 TCCTCTTAATGAACCAAGCACTCA 59.958 41.667 0.00 0.00 0.00 3.41
245 246 4.394300 CCTCTTAATGAACCAAGCACTCAG 59.606 45.833 0.00 0.00 0.00 3.35
246 247 5.227569 TCTTAATGAACCAAGCACTCAGA 57.772 39.130 0.00 0.00 0.00 3.27
247 248 5.809001 TCTTAATGAACCAAGCACTCAGAT 58.191 37.500 0.00 0.00 0.00 2.90
248 249 5.877012 TCTTAATGAACCAAGCACTCAGATC 59.123 40.000 0.00 0.00 0.00 2.75
249 250 3.708403 ATGAACCAAGCACTCAGATCA 57.292 42.857 0.00 0.00 0.00 2.92
250 251 3.490439 TGAACCAAGCACTCAGATCAA 57.510 42.857 0.00 0.00 0.00 2.57
251 252 3.819368 TGAACCAAGCACTCAGATCAAA 58.181 40.909 0.00 0.00 0.00 2.69
252 253 3.817084 TGAACCAAGCACTCAGATCAAAG 59.183 43.478 0.00 0.00 0.00 2.77
253 254 2.787994 ACCAAGCACTCAGATCAAAGG 58.212 47.619 0.00 0.00 0.00 3.11
254 255 2.373169 ACCAAGCACTCAGATCAAAGGA 59.627 45.455 0.00 0.00 0.00 3.36
255 256 3.008330 CCAAGCACTCAGATCAAAGGAG 58.992 50.000 0.00 0.00 34.85 3.69
256 257 3.008330 CAAGCACTCAGATCAAAGGAGG 58.992 50.000 0.00 0.00 32.98 4.30
257 258 2.264455 AGCACTCAGATCAAAGGAGGT 58.736 47.619 0.00 0.00 32.98 3.85
258 259 3.445008 AGCACTCAGATCAAAGGAGGTA 58.555 45.455 0.00 0.00 32.98 3.08
259 260 3.840666 AGCACTCAGATCAAAGGAGGTAA 59.159 43.478 0.00 0.00 32.98 2.85
260 261 4.081198 AGCACTCAGATCAAAGGAGGTAAG 60.081 45.833 0.00 0.00 32.98 2.34
261 262 4.764172 CACTCAGATCAAAGGAGGTAAGG 58.236 47.826 0.00 0.00 32.98 2.69
262 263 4.467795 CACTCAGATCAAAGGAGGTAAGGA 59.532 45.833 0.00 0.00 32.98 3.36
263 264 5.130145 CACTCAGATCAAAGGAGGTAAGGAT 59.870 44.000 0.00 0.00 32.98 3.24
264 265 5.130145 ACTCAGATCAAAGGAGGTAAGGATG 59.870 44.000 0.00 0.00 32.98 3.51
265 266 5.032846 TCAGATCAAAGGAGGTAAGGATGT 58.967 41.667 0.00 0.00 0.00 3.06
266 267 6.202331 TCAGATCAAAGGAGGTAAGGATGTA 58.798 40.000 0.00 0.00 0.00 2.29
267 268 6.098409 TCAGATCAAAGGAGGTAAGGATGTAC 59.902 42.308 0.00 0.00 0.00 2.90
268 269 4.730949 TCAAAGGAGGTAAGGATGTACG 57.269 45.455 0.00 0.00 0.00 3.67
269 270 4.091549 TCAAAGGAGGTAAGGATGTACGT 58.908 43.478 0.00 0.00 0.00 3.57
270 271 4.081862 TCAAAGGAGGTAAGGATGTACGTG 60.082 45.833 0.00 0.00 0.00 4.49
271 272 3.377253 AGGAGGTAAGGATGTACGTGA 57.623 47.619 0.00 0.00 0.00 4.35
272 273 3.288964 AGGAGGTAAGGATGTACGTGAG 58.711 50.000 0.00 0.00 0.00 3.51
273 274 3.053842 AGGAGGTAAGGATGTACGTGAGA 60.054 47.826 0.00 0.00 0.00 3.27
274 275 3.315749 GGAGGTAAGGATGTACGTGAGAG 59.684 52.174 0.00 0.00 0.00 3.20
275 276 3.946558 GAGGTAAGGATGTACGTGAGAGT 59.053 47.826 0.00 0.00 0.00 3.24
276 277 4.342359 AGGTAAGGATGTACGTGAGAGTT 58.658 43.478 0.00 0.00 0.00 3.01
277 278 4.158025 AGGTAAGGATGTACGTGAGAGTTG 59.842 45.833 0.00 0.00 0.00 3.16
278 279 2.656560 AGGATGTACGTGAGAGTTGC 57.343 50.000 0.00 0.00 0.00 4.17
279 280 2.171840 AGGATGTACGTGAGAGTTGCT 58.828 47.619 0.00 0.00 0.00 3.91
280 281 3.353557 AGGATGTACGTGAGAGTTGCTA 58.646 45.455 0.00 0.00 0.00 3.49
281 282 3.954904 AGGATGTACGTGAGAGTTGCTAT 59.045 43.478 0.00 0.00 0.00 2.97
282 283 4.045104 GGATGTACGTGAGAGTTGCTATG 58.955 47.826 0.00 0.00 0.00 2.23
283 284 4.202020 GGATGTACGTGAGAGTTGCTATGA 60.202 45.833 0.00 0.00 0.00 2.15
284 285 4.357018 TGTACGTGAGAGTTGCTATGAG 57.643 45.455 0.00 0.00 0.00 2.90
285 286 2.949451 ACGTGAGAGTTGCTATGAGG 57.051 50.000 0.00 0.00 0.00 3.86
286 287 2.447443 ACGTGAGAGTTGCTATGAGGA 58.553 47.619 0.00 0.00 0.00 3.71
287 288 2.164624 ACGTGAGAGTTGCTATGAGGAC 59.835 50.000 0.00 0.00 0.00 3.85
288 289 2.164422 CGTGAGAGTTGCTATGAGGACA 59.836 50.000 0.00 0.00 0.00 4.02
289 290 3.367395 CGTGAGAGTTGCTATGAGGACAA 60.367 47.826 0.00 0.00 0.00 3.18
290 291 4.569943 GTGAGAGTTGCTATGAGGACAAA 58.430 43.478 0.00 0.00 0.00 2.83
291 292 4.997395 GTGAGAGTTGCTATGAGGACAAAA 59.003 41.667 0.00 0.00 0.00 2.44
292 293 5.645497 GTGAGAGTTGCTATGAGGACAAAAT 59.355 40.000 0.00 0.00 0.00 1.82
293 294 6.150140 GTGAGAGTTGCTATGAGGACAAAATT 59.850 38.462 0.00 0.00 0.00 1.82
294 295 6.716628 TGAGAGTTGCTATGAGGACAAAATTT 59.283 34.615 0.00 0.00 0.00 1.82
295 296 7.882791 TGAGAGTTGCTATGAGGACAAAATTTA 59.117 33.333 0.00 0.00 0.00 1.40
296 297 8.045176 AGAGTTGCTATGAGGACAAAATTTAC 57.955 34.615 0.00 0.00 0.00 2.01
297 298 7.665559 AGAGTTGCTATGAGGACAAAATTTACA 59.334 33.333 0.00 0.00 0.00 2.41
298 299 8.177119 AGTTGCTATGAGGACAAAATTTACAA 57.823 30.769 0.00 0.00 0.00 2.41
299 300 8.299570 AGTTGCTATGAGGACAAAATTTACAAG 58.700 33.333 0.00 0.00 0.00 3.16
300 301 6.620678 TGCTATGAGGACAAAATTTACAAGC 58.379 36.000 0.00 0.00 0.00 4.01
301 302 6.208402 TGCTATGAGGACAAAATTTACAAGCA 59.792 34.615 0.00 0.00 0.00 3.91
302 303 7.090173 GCTATGAGGACAAAATTTACAAGCAA 58.910 34.615 0.00 0.00 0.00 3.91
303 304 7.274250 GCTATGAGGACAAAATTTACAAGCAAG 59.726 37.037 0.00 0.00 0.00 4.01
304 305 5.288804 TGAGGACAAAATTTACAAGCAAGC 58.711 37.500 0.00 0.00 0.00 4.01
305 306 5.163468 TGAGGACAAAATTTACAAGCAAGCA 60.163 36.000 0.00 0.00 0.00 3.91
306 307 5.049828 AGGACAAAATTTACAAGCAAGCAC 58.950 37.500 0.00 0.00 0.00 4.40
307 308 4.211164 GGACAAAATTTACAAGCAAGCACC 59.789 41.667 0.00 0.00 0.00 5.01
308 309 4.764172 ACAAAATTTACAAGCAAGCACCA 58.236 34.783 0.00 0.00 0.00 4.17
309 310 5.367302 ACAAAATTTACAAGCAAGCACCAT 58.633 33.333 0.00 0.00 0.00 3.55
310 311 5.466393 ACAAAATTTACAAGCAAGCACCATC 59.534 36.000 0.00 0.00 0.00 3.51
311 312 3.874392 ATTTACAAGCAAGCACCATCC 57.126 42.857 0.00 0.00 0.00 3.51
312 313 1.544724 TTACAAGCAAGCACCATCCC 58.455 50.000 0.00 0.00 0.00 3.85
313 314 0.403655 TACAAGCAAGCACCATCCCA 59.596 50.000 0.00 0.00 0.00 4.37
314 315 0.896940 ACAAGCAAGCACCATCCCAG 60.897 55.000 0.00 0.00 0.00 4.45
315 316 1.980772 AAGCAAGCACCATCCCAGC 60.981 57.895 0.00 0.00 0.00 4.85
316 317 2.362120 GCAAGCACCATCCCAGCT 60.362 61.111 0.00 0.00 41.03 4.24
318 319 4.428845 AAGCACCATCCCAGCTTG 57.571 55.556 0.00 0.00 45.99 4.01
319 320 1.304713 AAGCACCATCCCAGCTTGG 60.305 57.895 0.00 0.00 45.99 3.61
320 321 2.085343 AAGCACCATCCCAGCTTGGT 62.085 55.000 3.35 2.52 45.99 3.67
321 322 2.048603 GCACCATCCCAGCTTGGTC 61.049 63.158 4.77 0.00 44.38 4.02
322 323 1.379916 CACCATCCCAGCTTGGTCA 59.620 57.895 4.77 0.00 44.38 4.02
323 324 0.033796 CACCATCCCAGCTTGGTCAT 60.034 55.000 4.77 0.00 44.38 3.06
324 325 0.033796 ACCATCCCAGCTTGGTCATG 60.034 55.000 3.35 1.32 42.61 3.07
325 326 0.256752 CCATCCCAGCTTGGTCATGA 59.743 55.000 3.35 0.00 35.17 3.07
326 327 1.676746 CATCCCAGCTTGGTCATGAG 58.323 55.000 3.35 0.00 35.17 2.90
327 328 0.106819 ATCCCAGCTTGGTCATGAGC 60.107 55.000 18.01 18.01 35.17 4.26
329 330 0.323178 CCCAGCTTGGTCATGAGCTT 60.323 55.000 24.30 6.27 46.55 3.74
330 331 1.093159 CCAGCTTGGTCATGAGCTTC 58.907 55.000 24.30 13.40 46.55 3.86
331 332 1.093159 CAGCTTGGTCATGAGCTTCC 58.907 55.000 24.30 9.64 46.55 3.46
332 333 0.034670 AGCTTGGTCATGAGCTTCCC 60.035 55.000 24.30 9.26 46.55 3.97
333 334 0.034670 GCTTGGTCATGAGCTTCCCT 60.035 55.000 24.30 0.00 36.01 4.20
334 335 1.615384 GCTTGGTCATGAGCTTCCCTT 60.615 52.381 24.30 0.00 36.01 3.95
335 336 2.800250 CTTGGTCATGAGCTTCCCTTT 58.200 47.619 24.30 0.00 0.00 3.11
336 337 2.496899 TGGTCATGAGCTTCCCTTTC 57.503 50.000 24.30 0.00 0.00 2.62
337 338 1.004745 TGGTCATGAGCTTCCCTTTCC 59.995 52.381 24.30 5.66 0.00 3.13
338 339 1.004745 GGTCATGAGCTTCCCTTTCCA 59.995 52.381 17.59 0.00 0.00 3.53
339 340 2.357569 GGTCATGAGCTTCCCTTTCCAT 60.358 50.000 17.59 0.00 0.00 3.41
340 341 2.686915 GTCATGAGCTTCCCTTTCCATG 59.313 50.000 0.00 0.00 34.40 3.66
341 342 2.029623 CATGAGCTTCCCTTTCCATGG 58.970 52.381 4.97 4.97 0.00 3.66
342 343 0.323725 TGAGCTTCCCTTTCCATGGC 60.324 55.000 6.96 0.00 0.00 4.40
343 344 0.033699 GAGCTTCCCTTTCCATGGCT 60.034 55.000 6.96 0.00 0.00 4.75
344 345 0.324091 AGCTTCCCTTTCCATGGCTG 60.324 55.000 6.96 0.00 0.00 4.85
345 346 1.953231 GCTTCCCTTTCCATGGCTGC 61.953 60.000 6.96 0.00 0.00 5.25
346 347 0.612732 CTTCCCTTTCCATGGCTGCA 60.613 55.000 6.96 0.00 0.00 4.41
347 348 0.178938 TTCCCTTTCCATGGCTGCAA 60.179 50.000 6.96 0.00 0.00 4.08
348 349 0.041535 TCCCTTTCCATGGCTGCAAT 59.958 50.000 6.96 0.00 0.00 3.56
349 350 0.462789 CCCTTTCCATGGCTGCAATC 59.537 55.000 6.96 0.00 0.00 2.67
350 351 0.101759 CCTTTCCATGGCTGCAATCG 59.898 55.000 6.96 0.00 0.00 3.34
351 352 0.526954 CTTTCCATGGCTGCAATCGC 60.527 55.000 6.96 0.00 39.24 4.58
359 360 2.488355 CTGCAATCGCCCAGCAAG 59.512 61.111 0.00 0.00 37.89 4.01
360 361 2.282391 TGCAATCGCCCAGCAAGT 60.282 55.556 0.00 0.00 37.32 3.16
361 362 1.870055 CTGCAATCGCCCAGCAAGTT 61.870 55.000 0.00 0.00 37.89 2.66
362 363 1.290009 GCAATCGCCCAGCAAGTTT 59.710 52.632 0.00 0.00 0.00 2.66
363 364 1.010419 GCAATCGCCCAGCAAGTTTG 61.010 55.000 0.00 0.00 0.00 2.93
364 365 0.314935 CAATCGCCCAGCAAGTTTGT 59.685 50.000 0.00 0.00 0.00 2.83
365 366 0.598065 AATCGCCCAGCAAGTTTGTC 59.402 50.000 0.00 0.00 0.00 3.18
366 367 1.244019 ATCGCCCAGCAAGTTTGTCC 61.244 55.000 0.00 0.00 0.00 4.02
367 368 2.192861 CGCCCAGCAAGTTTGTCCA 61.193 57.895 0.00 0.00 0.00 4.02
368 369 1.662044 GCCCAGCAAGTTTGTCCAG 59.338 57.895 0.00 0.00 0.00 3.86
369 370 1.809567 GCCCAGCAAGTTTGTCCAGG 61.810 60.000 0.00 0.00 0.00 4.45
370 371 1.181098 CCCAGCAAGTTTGTCCAGGG 61.181 60.000 0.00 0.00 0.00 4.45
371 372 0.468029 CCAGCAAGTTTGTCCAGGGT 60.468 55.000 0.00 0.00 0.00 4.34
372 373 1.202879 CCAGCAAGTTTGTCCAGGGTA 60.203 52.381 0.00 0.00 0.00 3.69
373 374 2.154462 CAGCAAGTTTGTCCAGGGTAG 58.846 52.381 0.00 0.00 0.00 3.18
374 375 1.073923 AGCAAGTTTGTCCAGGGTAGG 59.926 52.381 0.00 0.00 0.00 3.18
375 376 1.534729 CAAGTTTGTCCAGGGTAGGC 58.465 55.000 0.00 0.00 0.00 3.93
424 427 3.571571 TGTGAGTTATCTGTACACACGC 58.428 45.455 0.00 0.00 39.13 5.34
518 545 5.694006 GTGGAACTGAGTGAGTATATCATGC 59.306 44.000 0.00 0.00 40.92 4.06
658 688 5.379732 TGTAAAAATTGGGATCCGAACAC 57.620 39.130 11.83 5.85 0.00 3.32
848 2341 7.091443 AGACGTCTTACATTTAGAAACAGAGG 58.909 38.462 13.58 0.00 0.00 3.69
849 2342 6.756221 ACGTCTTACATTTAGAAACAGAGGT 58.244 36.000 0.00 0.00 0.00 3.85
850 2343 7.889469 ACGTCTTACATTTAGAAACAGAGGTA 58.111 34.615 0.00 0.00 0.00 3.08
851 2344 7.811713 ACGTCTTACATTTAGAAACAGAGGTAC 59.188 37.037 0.00 0.00 0.00 3.34
863 2356 2.688538 AGGTACTCCCCCTCCGTC 59.311 66.667 0.00 0.00 0.00 4.79
864 2357 2.443577 GGTACTCCCCCTCCGTCC 60.444 72.222 0.00 0.00 0.00 4.79
865 2358 2.443577 GTACTCCCCCTCCGTCCC 60.444 72.222 0.00 0.00 0.00 4.46
866 2359 2.948354 TACTCCCCCTCCGTCCCA 60.948 66.667 0.00 0.00 0.00 4.37
867 2360 2.330209 TACTCCCCCTCCGTCCCAT 61.330 63.158 0.00 0.00 0.00 4.00
868 2361 2.599139 TACTCCCCCTCCGTCCCATG 62.599 65.000 0.00 0.00 0.00 3.66
869 2362 3.690206 TCCCCCTCCGTCCCATGA 61.690 66.667 0.00 0.00 0.00 3.07
870 2363 2.448542 CCCCCTCCGTCCCATGAT 60.449 66.667 0.00 0.00 0.00 2.45
871 2364 1.152118 CCCCCTCCGTCCCATGATA 60.152 63.158 0.00 0.00 0.00 2.15
872 2365 0.547712 CCCCCTCCGTCCCATGATAT 60.548 60.000 0.00 0.00 0.00 1.63
873 2366 1.273609 CCCCCTCCGTCCCATGATATA 60.274 57.143 0.00 0.00 0.00 0.86
874 2367 2.546899 CCCCTCCGTCCCATGATATAA 58.453 52.381 0.00 0.00 0.00 0.98
875 2368 2.501723 CCCCTCCGTCCCATGATATAAG 59.498 54.545 0.00 0.00 0.00 1.73
876 2369 3.441101 CCCTCCGTCCCATGATATAAGA 58.559 50.000 0.00 0.00 0.00 2.10
877 2370 3.838317 CCCTCCGTCCCATGATATAAGAA 59.162 47.826 0.00 0.00 0.00 2.52
878 2371 4.322801 CCCTCCGTCCCATGATATAAGAAC 60.323 50.000 0.00 0.00 0.00 3.01
879 2372 4.486090 CTCCGTCCCATGATATAAGAACG 58.514 47.826 0.00 0.00 0.00 3.95
880 2373 3.893200 TCCGTCCCATGATATAAGAACGT 59.107 43.478 0.00 0.00 0.00 3.99
881 2374 4.342951 TCCGTCCCATGATATAAGAACGTT 59.657 41.667 0.00 0.00 0.00 3.99
882 2375 5.054477 CCGTCCCATGATATAAGAACGTTT 58.946 41.667 0.46 0.00 0.00 3.60
883 2376 5.526111 CCGTCCCATGATATAAGAACGTTTT 59.474 40.000 0.46 0.00 0.00 2.43
884 2377 6.037830 CCGTCCCATGATATAAGAACGTTTTT 59.962 38.462 9.22 9.22 0.00 1.94
885 2378 6.905076 CGTCCCATGATATAAGAACGTTTTTG 59.095 38.462 13.87 0.00 0.00 2.44
886 2379 7.201574 CGTCCCATGATATAAGAACGTTTTTGA 60.202 37.037 13.87 2.81 0.00 2.69
887 2380 7.908601 GTCCCATGATATAAGAACGTTTTTGAC 59.091 37.037 13.87 5.89 0.00 3.18
888 2381 7.608376 TCCCATGATATAAGAACGTTTTTGACA 59.392 33.333 13.87 8.67 0.00 3.58
889 2382 7.696453 CCCATGATATAAGAACGTTTTTGACAC 59.304 37.037 13.87 4.54 0.00 3.67
890 2383 8.450964 CCATGATATAAGAACGTTTTTGACACT 58.549 33.333 13.87 0.00 0.00 3.55
893 2386 9.478768 TGATATAAGAACGTTTTTGACACTACA 57.521 29.630 13.87 3.34 0.00 2.74
894 2387 9.737025 GATATAAGAACGTTTTTGACACTACAC 57.263 33.333 13.87 0.00 0.00 2.90
895 2388 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
896 2389 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
897 2390 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
898 2391 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
909 2402 3.800531 ACTACACTAGTGCCAAAAACGT 58.199 40.909 22.90 2.45 37.69 3.99
910 2403 4.193865 ACTACACTAGTGCCAAAAACGTT 58.806 39.130 22.90 0.00 37.69 3.99
911 2404 3.685836 ACACTAGTGCCAAAAACGTTC 57.314 42.857 22.90 0.00 0.00 3.95
912 2405 3.275999 ACACTAGTGCCAAAAACGTTCT 58.724 40.909 22.90 0.00 0.00 3.01
913 2406 3.692593 ACACTAGTGCCAAAAACGTTCTT 59.307 39.130 22.90 0.00 0.00 2.52
914 2407 4.877251 ACACTAGTGCCAAAAACGTTCTTA 59.123 37.500 22.90 0.00 0.00 2.10
915 2408 5.529800 ACACTAGTGCCAAAAACGTTCTTAT 59.470 36.000 22.90 0.00 0.00 1.73
916 2409 6.707161 ACACTAGTGCCAAAAACGTTCTTATA 59.293 34.615 22.90 0.00 0.00 0.98
917 2410 7.389607 ACACTAGTGCCAAAAACGTTCTTATAT 59.610 33.333 22.90 0.00 0.00 0.86
918 2411 8.234546 CACTAGTGCCAAAAACGTTCTTATATT 58.765 33.333 10.54 0.00 0.00 1.28
919 2412 9.439500 ACTAGTGCCAAAAACGTTCTTATATTA 57.561 29.630 0.00 0.00 0.00 0.98
922 2415 8.188139 AGTGCCAAAAACGTTCTTATATTATGG 58.812 33.333 0.00 3.63 0.00 2.74
923 2416 7.434013 GTGCCAAAAACGTTCTTATATTATGGG 59.566 37.037 0.00 0.00 0.00 4.00
924 2417 7.339721 TGCCAAAAACGTTCTTATATTATGGGA 59.660 33.333 0.00 1.11 0.00 4.37
925 2418 7.646526 GCCAAAAACGTTCTTATATTATGGGAC 59.353 37.037 0.00 0.00 0.00 4.46
1008 2502 7.584987 CAGTAACAATTTTGTAGGGTTCTCTG 58.415 38.462 0.00 0.00 41.31 3.35
1161 2658 2.273449 CTGTGGAGCCCATGGGAC 59.727 66.667 36.00 25.05 35.28 4.46
1183 2680 1.737236 GTGCACTCAAATACCGCATCA 59.263 47.619 10.32 0.00 34.66 3.07
1323 2820 2.933495 TCGGTGGTTATGACGAAGAG 57.067 50.000 0.00 0.00 31.79 2.85
1380 2877 3.678548 GTCATTTAACGAGGTCTGTGGTC 59.321 47.826 0.00 0.00 0.00 4.02
1564 3061 4.502431 CGACTCTGCTCTCCATCTAGTAGA 60.502 50.000 1.45 1.45 34.02 2.59
1660 3158 1.467734 GAGTGAGTCGTACGTGGACAT 59.532 52.381 16.05 8.19 36.87 3.06
1710 3208 6.808008 ATGTTTCTGGTTAACATGTCTCTG 57.192 37.500 8.10 0.00 42.82 3.35
1711 3209 5.063204 TGTTTCTGGTTAACATGTCTCTGG 58.937 41.667 8.10 0.00 30.96 3.86
1848 3424 1.201647 TCTAGTTGGACGTACTGCTGC 59.798 52.381 0.00 0.00 0.00 5.25
1917 3493 8.856490 AAAAAGAAATGTGTGTTTAGTGCTAG 57.144 30.769 0.00 0.00 0.00 3.42
1951 3527 3.726291 TTTGTTGGGAAAGCTTAGTGC 57.274 42.857 0.00 0.00 43.29 4.40
1993 3569 7.553881 TTCTTTTAGCCATAGTGCTTACATC 57.446 36.000 0.00 0.00 42.75 3.06
2047 3624 6.265422 ACACTTCTTTAGGGAGTCCAAAAATG 59.735 38.462 12.30 8.06 34.83 2.32
2057 3634 7.748677 AGGGAGTCCAAAAATGATCAAATTTT 58.251 30.769 12.30 13.79 40.60 1.82
2058 3635 8.219868 AGGGAGTCCAAAAATGATCAAATTTTT 58.780 29.630 12.30 14.04 45.91 1.94
2076 3653 8.599774 CAAATTTTTAATGTGTTCGTGGAGTTT 58.400 29.630 0.00 0.00 0.00 2.66
2308 3886 8.934973 AAAGAAAGAATCACGAAATCTTTACG 57.065 30.769 9.76 0.00 41.96 3.18
2315 3893 6.861065 ATCACGAAATCTTTACGGCATATT 57.139 33.333 0.00 0.00 0.00 1.28
2553 4132 4.096003 CTCCAACCGCCGGTGGAT 62.096 66.667 40.02 27.05 35.34 3.41
2558 4137 3.072486 AACCGCCGGTGGATACGAG 62.072 63.158 40.02 12.45 35.34 4.18
2561 4140 3.845259 GCCGGTGGATACGAGGCA 61.845 66.667 1.90 0.00 45.08 4.75
2582 4161 4.504097 GCAGTCAGTGGTTTTTCAATTGTC 59.496 41.667 5.13 0.00 0.00 3.18
2626 4205 0.745128 TGGCAAACCTGAACGACGTT 60.745 50.000 14.11 14.11 36.63 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.507141 CTCCGGTGCCTTGTGACAAC 61.507 60.000 0.00 0.00 0.00 3.32
1 2 1.227823 CTCCGGTGCCTTGTGACAA 60.228 57.895 0.00 0.00 0.00 3.18
3 4 1.668151 GACTCCGGTGCCTTGTGAC 60.668 63.158 0.00 0.00 0.00 3.67
5 6 2.358737 GGACTCCGGTGCCTTGTG 60.359 66.667 0.00 0.00 0.00 3.33
11 12 4.097361 GGAAGGGGACTCCGGTGC 62.097 72.222 0.00 0.00 42.68 5.01
12 13 1.995626 ATGGAAGGGGACTCCGGTG 60.996 63.158 0.00 0.00 42.68 4.94
13 14 1.995626 CATGGAAGGGGACTCCGGT 60.996 63.158 0.00 0.00 42.68 5.28
14 15 2.746375 CCATGGAAGGGGACTCCGG 61.746 68.421 5.56 0.00 42.68 5.14
15 16 1.972660 GACCATGGAAGGGGACTCCG 61.973 65.000 21.47 0.00 46.47 4.63
16 17 0.621862 AGACCATGGAAGGGGACTCC 60.622 60.000 21.47 0.00 46.47 3.85
17 18 0.833949 GAGACCATGGAAGGGGACTC 59.166 60.000 21.47 10.69 46.47 3.36
18 19 0.419459 AGAGACCATGGAAGGGGACT 59.581 55.000 21.47 5.57 46.47 3.85
19 20 0.543749 CAGAGACCATGGAAGGGGAC 59.456 60.000 21.47 2.43 46.47 4.46
20 21 0.417437 TCAGAGACCATGGAAGGGGA 59.583 55.000 21.47 7.41 46.47 4.81
21 22 1.065126 GTTCAGAGACCATGGAAGGGG 60.065 57.143 21.47 4.91 46.47 4.79
23 24 3.641434 ATGTTCAGAGACCATGGAAGG 57.359 47.619 21.47 2.98 0.00 3.46
24 25 5.350504 ACTATGTTCAGAGACCATGGAAG 57.649 43.478 21.47 3.01 0.00 3.46
25 26 4.162320 GGACTATGTTCAGAGACCATGGAA 59.838 45.833 21.47 0.00 0.00 3.53
26 27 3.706594 GGACTATGTTCAGAGACCATGGA 59.293 47.826 21.47 0.00 0.00 3.41
27 28 3.181461 GGGACTATGTTCAGAGACCATGG 60.181 52.174 11.19 11.19 0.00 3.66
28 29 3.452264 TGGGACTATGTTCAGAGACCATG 59.548 47.826 15.02 0.00 0.00 3.66
29 30 3.452627 GTGGGACTATGTTCAGAGACCAT 59.547 47.826 15.02 0.00 0.00 3.55
30 31 2.832129 GTGGGACTATGTTCAGAGACCA 59.168 50.000 15.02 12.33 0.00 4.02
31 32 3.100671 AGTGGGACTATGTTCAGAGACC 58.899 50.000 7.25 7.25 0.00 3.85
32 33 3.131400 GGAGTGGGACTATGTTCAGAGAC 59.869 52.174 1.38 0.00 0.00 3.36
33 34 3.245622 TGGAGTGGGACTATGTTCAGAGA 60.246 47.826 1.38 0.00 0.00 3.10
34 35 3.099905 TGGAGTGGGACTATGTTCAGAG 58.900 50.000 0.00 0.00 0.00 3.35
35 36 3.184382 TGGAGTGGGACTATGTTCAGA 57.816 47.619 0.00 0.00 0.00 3.27
36 37 3.181461 GGATGGAGTGGGACTATGTTCAG 60.181 52.174 0.00 0.00 0.00 3.02
37 38 2.771943 GGATGGAGTGGGACTATGTTCA 59.228 50.000 0.00 0.00 0.00 3.18
38 39 2.771943 TGGATGGAGTGGGACTATGTTC 59.228 50.000 0.00 0.00 0.00 3.18
39 40 2.505819 GTGGATGGAGTGGGACTATGTT 59.494 50.000 0.00 0.00 0.00 2.71
40 41 2.119495 GTGGATGGAGTGGGACTATGT 58.881 52.381 0.00 0.00 0.00 2.29
41 42 2.103771 CTGTGGATGGAGTGGGACTATG 59.896 54.545 0.00 0.00 0.00 2.23
42 43 2.402564 CTGTGGATGGAGTGGGACTAT 58.597 52.381 0.00 0.00 0.00 2.12
43 44 1.866015 CTGTGGATGGAGTGGGACTA 58.134 55.000 0.00 0.00 0.00 2.59
44 45 1.557269 GCTGTGGATGGAGTGGGACT 61.557 60.000 0.00 0.00 0.00 3.85
45 46 1.078143 GCTGTGGATGGAGTGGGAC 60.078 63.158 0.00 0.00 0.00 4.46
46 47 2.300967 GGCTGTGGATGGAGTGGGA 61.301 63.158 0.00 0.00 0.00 4.37
47 48 2.141011 TTGGCTGTGGATGGAGTGGG 62.141 60.000 0.00 0.00 0.00 4.61
48 49 0.962356 GTTGGCTGTGGATGGAGTGG 60.962 60.000 0.00 0.00 0.00 4.00
49 50 1.300971 CGTTGGCTGTGGATGGAGTG 61.301 60.000 0.00 0.00 0.00 3.51
50 51 1.003355 CGTTGGCTGTGGATGGAGT 60.003 57.895 0.00 0.00 0.00 3.85
51 52 2.401766 GCGTTGGCTGTGGATGGAG 61.402 63.158 0.00 0.00 35.83 3.86
52 53 2.359850 GCGTTGGCTGTGGATGGA 60.360 61.111 0.00 0.00 35.83 3.41
53 54 2.203972 CTTGCGTTGGCTGTGGATGG 62.204 60.000 0.00 0.00 40.82 3.51
54 55 1.210931 CTTGCGTTGGCTGTGGATG 59.789 57.895 0.00 0.00 40.82 3.51
55 56 2.629656 GCTTGCGTTGGCTGTGGAT 61.630 57.895 0.00 0.00 40.82 3.41
56 57 3.286751 GCTTGCGTTGGCTGTGGA 61.287 61.111 0.00 0.00 40.82 4.02
57 58 4.688419 CGCTTGCGTTGGCTGTGG 62.688 66.667 6.86 0.00 40.82 4.17
58 59 3.179869 TTCGCTTGCGTTGGCTGTG 62.180 57.895 14.70 0.00 40.82 3.66
59 60 2.896801 CTTCGCTTGCGTTGGCTGT 61.897 57.895 14.70 0.00 40.82 4.40
60 61 2.127118 CTTCGCTTGCGTTGGCTG 60.127 61.111 14.70 0.00 40.82 4.85
61 62 2.280797 TCTTCGCTTGCGTTGGCT 60.281 55.556 14.70 0.00 40.82 4.75
62 63 2.174349 CTCTTCGCTTGCGTTGGC 59.826 61.111 14.70 0.00 40.52 4.52
63 64 2.174349 GCTCTTCGCTTGCGTTGG 59.826 61.111 14.70 6.60 35.14 3.77
72 73 2.413453 CTGTTTTGGTAGAGCTCTTCGC 59.587 50.000 23.84 12.43 39.57 4.70
73 74 3.654414 ACTGTTTTGGTAGAGCTCTTCG 58.346 45.455 23.84 4.64 0.00 3.79
74 75 7.226918 ACTTAAACTGTTTTGGTAGAGCTCTTC 59.773 37.037 23.84 17.25 0.00 2.87
75 76 7.054751 ACTTAAACTGTTTTGGTAGAGCTCTT 58.945 34.615 23.84 6.22 0.00 2.85
76 77 6.592870 ACTTAAACTGTTTTGGTAGAGCTCT 58.407 36.000 22.17 22.17 0.00 4.09
77 78 6.073167 GGACTTAAACTGTTTTGGTAGAGCTC 60.073 42.308 11.48 5.27 0.00 4.09
78 79 5.763698 GGACTTAAACTGTTTTGGTAGAGCT 59.236 40.000 11.48 0.00 0.00 4.09
79 80 5.763698 AGGACTTAAACTGTTTTGGTAGAGC 59.236 40.000 11.48 0.17 0.00 4.09
80 81 7.497909 TCAAGGACTTAAACTGTTTTGGTAGAG 59.502 37.037 11.48 3.70 0.00 2.43
81 82 7.340256 TCAAGGACTTAAACTGTTTTGGTAGA 58.660 34.615 11.48 5.16 0.00 2.59
82 83 7.562454 TCAAGGACTTAAACTGTTTTGGTAG 57.438 36.000 11.48 6.90 0.00 3.18
83 84 9.059260 GTATCAAGGACTTAAACTGTTTTGGTA 57.941 33.333 11.48 0.00 0.00 3.25
84 85 7.013942 GGTATCAAGGACTTAAACTGTTTTGGT 59.986 37.037 11.48 10.25 0.00 3.67
85 86 7.368059 GGTATCAAGGACTTAAACTGTTTTGG 58.632 38.462 11.48 7.26 0.00 3.28
86 87 7.041644 TCGGTATCAAGGACTTAAACTGTTTTG 60.042 37.037 11.48 7.61 0.00 2.44
87 88 6.993902 TCGGTATCAAGGACTTAAACTGTTTT 59.006 34.615 11.48 0.00 0.00 2.43
88 89 6.527423 TCGGTATCAAGGACTTAAACTGTTT 58.473 36.000 10.98 10.98 0.00 2.83
89 90 6.105397 TCGGTATCAAGGACTTAAACTGTT 57.895 37.500 0.00 0.00 0.00 3.16
90 91 5.337330 CCTCGGTATCAAGGACTTAAACTGT 60.337 44.000 0.00 0.00 34.35 3.55
91 92 5.109903 CCTCGGTATCAAGGACTTAAACTG 58.890 45.833 0.00 0.00 34.35 3.16
92 93 4.382793 GCCTCGGTATCAAGGACTTAAACT 60.383 45.833 0.00 0.00 34.35 2.66
93 94 3.869832 GCCTCGGTATCAAGGACTTAAAC 59.130 47.826 0.00 0.00 34.35 2.01
94 95 3.118519 GGCCTCGGTATCAAGGACTTAAA 60.119 47.826 0.00 0.00 37.73 1.52
95 96 2.433239 GGCCTCGGTATCAAGGACTTAA 59.567 50.000 0.00 0.00 37.73 1.85
96 97 2.037144 GGCCTCGGTATCAAGGACTTA 58.963 52.381 0.00 0.00 37.73 2.24
97 98 0.831307 GGCCTCGGTATCAAGGACTT 59.169 55.000 0.00 0.00 37.73 3.01
98 99 1.049289 GGGCCTCGGTATCAAGGACT 61.049 60.000 0.84 0.00 40.84 3.85
99 100 1.446366 GGGCCTCGGTATCAAGGAC 59.554 63.158 0.84 0.00 40.26 3.85
100 101 1.764854 GGGGCCTCGGTATCAAGGA 60.765 63.158 0.84 0.00 34.35 3.36
101 102 2.819284 GGGGGCCTCGGTATCAAGG 61.819 68.421 0.84 0.00 35.65 3.61
102 103 2.044806 CTGGGGGCCTCGGTATCAAG 62.045 65.000 3.26 0.00 0.00 3.02
103 104 2.041430 TGGGGGCCTCGGTATCAA 59.959 61.111 0.84 0.00 0.00 2.57
104 105 2.445845 CTGGGGGCCTCGGTATCA 60.446 66.667 3.26 0.00 0.00 2.15
105 106 2.446036 ACTGGGGGCCTCGGTATC 60.446 66.667 18.61 0.00 0.00 2.24
106 107 2.446036 GACTGGGGGCCTCGGTAT 60.446 66.667 20.28 0.00 0.00 2.73
107 108 3.549433 TTGACTGGGGGCCTCGGTA 62.549 63.158 20.28 0.00 0.00 4.02
108 109 4.974438 TTGACTGGGGGCCTCGGT 62.974 66.667 20.38 20.38 0.00 4.69
109 110 4.410400 GTTGACTGGGGGCCTCGG 62.410 72.222 11.77 11.77 0.00 4.63
110 111 2.804828 GAAGTTGACTGGGGGCCTCG 62.805 65.000 0.84 0.00 0.00 4.63
111 112 1.002011 GAAGTTGACTGGGGGCCTC 60.002 63.158 0.84 0.00 0.00 4.70
112 113 2.895424 CGAAGTTGACTGGGGGCCT 61.895 63.158 0.84 0.00 0.00 5.19
113 114 2.359975 CGAAGTTGACTGGGGGCC 60.360 66.667 0.00 0.00 0.00 5.80
114 115 2.359975 CCGAAGTTGACTGGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
115 116 1.296715 CTCCGAAGTTGACTGGGGG 59.703 63.158 0.00 0.00 0.00 5.40
116 117 1.376037 GCTCCGAAGTTGACTGGGG 60.376 63.158 0.00 0.00 0.00 4.96
117 118 0.951040 GTGCTCCGAAGTTGACTGGG 60.951 60.000 0.00 0.00 0.00 4.45
118 119 0.249868 TGTGCTCCGAAGTTGACTGG 60.250 55.000 0.00 0.00 0.00 4.00
119 120 0.861837 GTGTGCTCCGAAGTTGACTG 59.138 55.000 0.00 0.00 0.00 3.51
120 121 0.464036 TGTGTGCTCCGAAGTTGACT 59.536 50.000 0.00 0.00 0.00 3.41
121 122 0.582005 GTGTGTGCTCCGAAGTTGAC 59.418 55.000 0.00 0.00 0.00 3.18
122 123 0.464036 AGTGTGTGCTCCGAAGTTGA 59.536 50.000 0.00 0.00 0.00 3.18
123 124 1.299541 AAGTGTGTGCTCCGAAGTTG 58.700 50.000 0.00 0.00 0.00 3.16
124 125 2.038387 AAAGTGTGTGCTCCGAAGTT 57.962 45.000 0.00 0.00 0.00 2.66
125 126 2.038387 AAAAGTGTGTGCTCCGAAGT 57.962 45.000 0.00 0.00 0.00 3.01
142 143 2.079170 TGCATGGTGTCCTGGAAAAA 57.921 45.000 0.00 0.00 0.00 1.94
143 144 2.307496 ATGCATGGTGTCCTGGAAAA 57.693 45.000 0.00 0.00 0.00 2.29
144 145 2.307496 AATGCATGGTGTCCTGGAAA 57.693 45.000 0.00 0.00 0.00 3.13
145 146 2.170166 GAAATGCATGGTGTCCTGGAA 58.830 47.619 0.00 0.00 0.00 3.53
146 147 1.616725 GGAAATGCATGGTGTCCTGGA 60.617 52.381 0.00 0.00 0.00 3.86
147 148 0.819582 GGAAATGCATGGTGTCCTGG 59.180 55.000 0.00 0.00 0.00 4.45
148 149 0.819582 GGGAAATGCATGGTGTCCTG 59.180 55.000 0.00 0.00 0.00 3.86
149 150 0.706433 AGGGAAATGCATGGTGTCCT 59.294 50.000 0.00 0.58 0.00 3.85
150 151 1.106285 GAGGGAAATGCATGGTGTCC 58.894 55.000 0.00 5.19 0.00 4.02
151 152 1.106285 GGAGGGAAATGCATGGTGTC 58.894 55.000 0.00 0.00 0.00 3.67
152 153 0.409092 TGGAGGGAAATGCATGGTGT 59.591 50.000 0.00 0.00 0.00 4.16
153 154 1.411246 CATGGAGGGAAATGCATGGTG 59.589 52.381 0.00 0.00 43.16 4.17
154 155 1.784358 CATGGAGGGAAATGCATGGT 58.216 50.000 0.00 0.00 43.16 3.55
166 167 0.394899 GAAGAGGTTGCCCATGGAGG 60.395 60.000 15.22 0.00 37.03 4.30
167 168 0.745845 CGAAGAGGTTGCCCATGGAG 60.746 60.000 15.22 4.39 0.00 3.86
168 169 1.299648 CGAAGAGGTTGCCCATGGA 59.700 57.895 15.22 0.00 0.00 3.41
169 170 2.409870 GCGAAGAGGTTGCCCATGG 61.410 63.158 4.14 4.14 0.00 3.66
170 171 2.409870 GGCGAAGAGGTTGCCCATG 61.410 63.158 0.00 0.00 43.06 3.66
171 172 2.044946 GGCGAAGAGGTTGCCCAT 60.045 61.111 0.00 0.00 43.06 4.00
175 176 3.435186 GGCTGGCGAAGAGGTTGC 61.435 66.667 0.00 0.00 0.00 4.17
176 177 2.747855 GGGCTGGCGAAGAGGTTG 60.748 66.667 0.00 0.00 0.00 3.77
177 178 3.249189 TGGGCTGGCGAAGAGGTT 61.249 61.111 0.00 0.00 0.00 3.50
178 179 4.021925 GTGGGCTGGCGAAGAGGT 62.022 66.667 0.00 0.00 0.00 3.85
179 180 3.551496 TTGTGGGCTGGCGAAGAGG 62.551 63.158 0.00 0.00 0.00 3.69
180 181 1.172180 TTTTGTGGGCTGGCGAAGAG 61.172 55.000 0.00 0.00 0.00 2.85
181 182 0.753479 TTTTTGTGGGCTGGCGAAGA 60.753 50.000 0.00 0.00 0.00 2.87
182 183 0.318955 CTTTTTGTGGGCTGGCGAAG 60.319 55.000 0.00 0.00 0.00 3.79
183 184 1.739049 CTTTTTGTGGGCTGGCGAA 59.261 52.632 0.00 0.00 0.00 4.70
184 185 2.855514 GCTTTTTGTGGGCTGGCGA 61.856 57.895 0.00 0.00 0.00 5.54
185 186 2.356194 GCTTTTTGTGGGCTGGCG 60.356 61.111 0.00 0.00 0.00 5.69
186 187 2.031012 GGCTTTTTGTGGGCTGGC 59.969 61.111 0.00 0.00 0.00 4.85
187 188 2.743060 GGGCTTTTTGTGGGCTGG 59.257 61.111 0.00 0.00 0.00 4.85
188 189 2.743060 GGGGCTTTTTGTGGGCTG 59.257 61.111 0.00 0.00 0.00 4.85
189 190 2.917227 CGGGGCTTTTTGTGGGCT 60.917 61.111 0.00 0.00 0.00 5.19
190 191 4.680237 GCGGGGCTTTTTGTGGGC 62.680 66.667 0.00 0.00 0.00 5.36
191 192 4.002506 GGCGGGGCTTTTTGTGGG 62.003 66.667 0.00 0.00 0.00 4.61
192 193 2.917227 AGGCGGGGCTTTTTGTGG 60.917 61.111 0.00 0.00 0.00 4.17
193 194 2.146073 CTGAGGCGGGGCTTTTTGTG 62.146 60.000 0.00 0.00 0.00 3.33
194 195 1.903404 CTGAGGCGGGGCTTTTTGT 60.903 57.895 0.00 0.00 0.00 2.83
195 196 2.964978 CTGAGGCGGGGCTTTTTG 59.035 61.111 0.00 0.00 0.00 2.44
196 197 2.991540 GCTGAGGCGGGGCTTTTT 60.992 61.111 0.00 0.00 0.00 1.94
197 198 3.513750 AAGCTGAGGCGGGGCTTTT 62.514 57.895 7.75 0.00 42.65 2.27
198 199 3.971702 AAGCTGAGGCGGGGCTTT 61.972 61.111 7.75 0.00 42.65 3.51
199 200 4.729918 CAAGCTGAGGCGGGGCTT 62.730 66.667 7.75 7.75 45.57 4.35
202 203 2.826777 ATTGACAAGCTGAGGCGGGG 62.827 60.000 0.00 0.00 44.37 5.73
203 204 1.372087 GATTGACAAGCTGAGGCGGG 61.372 60.000 0.00 0.00 44.37 6.13
204 205 1.372087 GGATTGACAAGCTGAGGCGG 61.372 60.000 3.07 0.00 44.37 6.13
205 206 0.392193 AGGATTGACAAGCTGAGGCG 60.392 55.000 3.07 0.00 44.37 5.52
206 207 1.065564 AGAGGATTGACAAGCTGAGGC 60.066 52.381 3.07 0.00 39.06 4.70
207 208 3.347077 AAGAGGATTGACAAGCTGAGG 57.653 47.619 3.07 0.00 0.00 3.86
208 209 6.111382 TCATTAAGAGGATTGACAAGCTGAG 58.889 40.000 3.07 0.00 0.00 3.35
209 210 6.053632 TCATTAAGAGGATTGACAAGCTGA 57.946 37.500 3.07 0.00 0.00 4.26
210 211 6.404074 GGTTCATTAAGAGGATTGACAAGCTG 60.404 42.308 3.07 0.00 0.00 4.24
211 212 5.649831 GGTTCATTAAGAGGATTGACAAGCT 59.350 40.000 3.07 0.00 0.00 3.74
212 213 5.415701 TGGTTCATTAAGAGGATTGACAAGC 59.584 40.000 0.00 0.00 0.00 4.01
213 214 7.452880 TTGGTTCATTAAGAGGATTGACAAG 57.547 36.000 0.00 0.00 0.00 3.16
214 215 6.071952 GCTTGGTTCATTAAGAGGATTGACAA 60.072 38.462 0.00 0.00 0.00 3.18
215 216 5.415701 GCTTGGTTCATTAAGAGGATTGACA 59.584 40.000 0.00 0.00 0.00 3.58
216 217 5.415701 TGCTTGGTTCATTAAGAGGATTGAC 59.584 40.000 0.00 0.00 0.00 3.18
217 218 5.415701 GTGCTTGGTTCATTAAGAGGATTGA 59.584 40.000 0.00 0.00 0.00 2.57
218 219 5.416952 AGTGCTTGGTTCATTAAGAGGATTG 59.583 40.000 0.00 0.00 0.00 2.67
219 220 5.574188 AGTGCTTGGTTCATTAAGAGGATT 58.426 37.500 0.00 0.00 0.00 3.01
220 221 5.184892 AGTGCTTGGTTCATTAAGAGGAT 57.815 39.130 0.00 0.00 0.00 3.24
221 222 4.041567 TGAGTGCTTGGTTCATTAAGAGGA 59.958 41.667 0.00 0.00 0.00 3.71
222 223 4.326826 TGAGTGCTTGGTTCATTAAGAGG 58.673 43.478 0.00 0.00 0.00 3.69
223 224 5.240891 TCTGAGTGCTTGGTTCATTAAGAG 58.759 41.667 0.00 0.00 0.00 2.85
224 225 5.227569 TCTGAGTGCTTGGTTCATTAAGA 57.772 39.130 0.00 0.00 0.00 2.10
225 226 5.645067 TGATCTGAGTGCTTGGTTCATTAAG 59.355 40.000 0.00 0.00 0.00 1.85
226 227 5.559770 TGATCTGAGTGCTTGGTTCATTAA 58.440 37.500 0.00 0.00 0.00 1.40
227 228 5.164620 TGATCTGAGTGCTTGGTTCATTA 57.835 39.130 0.00 0.00 0.00 1.90
228 229 4.025040 TGATCTGAGTGCTTGGTTCATT 57.975 40.909 0.00 0.00 0.00 2.57
229 230 3.708403 TGATCTGAGTGCTTGGTTCAT 57.292 42.857 0.00 0.00 0.00 2.57
230 231 3.490439 TTGATCTGAGTGCTTGGTTCA 57.510 42.857 0.00 0.00 0.00 3.18
231 232 3.190118 CCTTTGATCTGAGTGCTTGGTTC 59.810 47.826 0.00 0.00 0.00 3.62
232 233 3.152341 CCTTTGATCTGAGTGCTTGGTT 58.848 45.455 0.00 0.00 0.00 3.67
233 234 2.373169 TCCTTTGATCTGAGTGCTTGGT 59.627 45.455 0.00 0.00 0.00 3.67
234 235 3.008330 CTCCTTTGATCTGAGTGCTTGG 58.992 50.000 0.00 0.00 0.00 3.61
235 236 3.008330 CCTCCTTTGATCTGAGTGCTTG 58.992 50.000 0.00 0.00 0.00 4.01
236 237 2.641815 ACCTCCTTTGATCTGAGTGCTT 59.358 45.455 0.00 0.00 0.00 3.91
237 238 2.264455 ACCTCCTTTGATCTGAGTGCT 58.736 47.619 0.00 0.00 0.00 4.40
238 239 2.777832 ACCTCCTTTGATCTGAGTGC 57.222 50.000 0.00 0.00 0.00 4.40
239 240 4.467795 TCCTTACCTCCTTTGATCTGAGTG 59.532 45.833 0.00 0.00 0.00 3.51
240 241 4.689062 TCCTTACCTCCTTTGATCTGAGT 58.311 43.478 0.00 0.00 0.00 3.41
241 242 5.130145 ACATCCTTACCTCCTTTGATCTGAG 59.870 44.000 0.00 0.00 0.00 3.35
242 243 5.032846 ACATCCTTACCTCCTTTGATCTGA 58.967 41.667 0.00 0.00 0.00 3.27
243 244 5.365021 ACATCCTTACCTCCTTTGATCTG 57.635 43.478 0.00 0.00 0.00 2.90
244 245 5.069251 CGTACATCCTTACCTCCTTTGATCT 59.931 44.000 0.00 0.00 0.00 2.75
245 246 5.163437 ACGTACATCCTTACCTCCTTTGATC 60.163 44.000 0.00 0.00 0.00 2.92
246 247 4.715297 ACGTACATCCTTACCTCCTTTGAT 59.285 41.667 0.00 0.00 0.00 2.57
247 248 4.081862 CACGTACATCCTTACCTCCTTTGA 60.082 45.833 0.00 0.00 0.00 2.69
248 249 4.081862 TCACGTACATCCTTACCTCCTTTG 60.082 45.833 0.00 0.00 0.00 2.77
249 250 4.091549 TCACGTACATCCTTACCTCCTTT 58.908 43.478 0.00 0.00 0.00 3.11
250 251 3.700038 CTCACGTACATCCTTACCTCCTT 59.300 47.826 0.00 0.00 0.00 3.36
251 252 3.053842 TCTCACGTACATCCTTACCTCCT 60.054 47.826 0.00 0.00 0.00 3.69
252 253 3.285484 TCTCACGTACATCCTTACCTCC 58.715 50.000 0.00 0.00 0.00 4.30
253 254 3.946558 ACTCTCACGTACATCCTTACCTC 59.053 47.826 0.00 0.00 0.00 3.85
254 255 3.965694 ACTCTCACGTACATCCTTACCT 58.034 45.455 0.00 0.00 0.00 3.08
255 256 4.421948 CAACTCTCACGTACATCCTTACC 58.578 47.826 0.00 0.00 0.00 2.85
256 257 3.858238 GCAACTCTCACGTACATCCTTAC 59.142 47.826 0.00 0.00 0.00 2.34
257 258 3.762288 AGCAACTCTCACGTACATCCTTA 59.238 43.478 0.00 0.00 0.00 2.69
258 259 2.563179 AGCAACTCTCACGTACATCCTT 59.437 45.455 0.00 0.00 0.00 3.36
259 260 2.171840 AGCAACTCTCACGTACATCCT 58.828 47.619 0.00 0.00 0.00 3.24
260 261 2.656560 AGCAACTCTCACGTACATCC 57.343 50.000 0.00 0.00 0.00 3.51
261 262 4.921547 TCATAGCAACTCTCACGTACATC 58.078 43.478 0.00 0.00 0.00 3.06
262 263 4.202060 CCTCATAGCAACTCTCACGTACAT 60.202 45.833 0.00 0.00 0.00 2.29
263 264 3.128764 CCTCATAGCAACTCTCACGTACA 59.871 47.826 0.00 0.00 0.00 2.90
264 265 3.377485 TCCTCATAGCAACTCTCACGTAC 59.623 47.826 0.00 0.00 0.00 3.67
265 266 3.377485 GTCCTCATAGCAACTCTCACGTA 59.623 47.826 0.00 0.00 0.00 3.57
266 267 2.164624 GTCCTCATAGCAACTCTCACGT 59.835 50.000 0.00 0.00 0.00 4.49
267 268 2.164422 TGTCCTCATAGCAACTCTCACG 59.836 50.000 0.00 0.00 0.00 4.35
268 269 3.876274 TGTCCTCATAGCAACTCTCAC 57.124 47.619 0.00 0.00 0.00 3.51
269 270 4.890158 TTTGTCCTCATAGCAACTCTCA 57.110 40.909 0.00 0.00 0.00 3.27
270 271 6.749923 AATTTTGTCCTCATAGCAACTCTC 57.250 37.500 0.00 0.00 0.00 3.20
271 272 7.665559 TGTAAATTTTGTCCTCATAGCAACTCT 59.334 33.333 0.00 0.00 0.00 3.24
272 273 7.816640 TGTAAATTTTGTCCTCATAGCAACTC 58.183 34.615 0.00 0.00 0.00 3.01
273 274 7.759489 TGTAAATTTTGTCCTCATAGCAACT 57.241 32.000 0.00 0.00 0.00 3.16
274 275 7.062255 GCTTGTAAATTTTGTCCTCATAGCAAC 59.938 37.037 0.00 0.00 0.00 4.17
275 276 7.090173 GCTTGTAAATTTTGTCCTCATAGCAA 58.910 34.615 0.00 0.00 0.00 3.91
276 277 6.208402 TGCTTGTAAATTTTGTCCTCATAGCA 59.792 34.615 0.00 0.00 0.00 3.49
277 278 6.620678 TGCTTGTAAATTTTGTCCTCATAGC 58.379 36.000 0.00 0.00 0.00 2.97
278 279 7.274250 GCTTGCTTGTAAATTTTGTCCTCATAG 59.726 37.037 0.00 0.00 0.00 2.23
279 280 7.090173 GCTTGCTTGTAAATTTTGTCCTCATA 58.910 34.615 0.00 0.00 0.00 2.15
280 281 5.928264 GCTTGCTTGTAAATTTTGTCCTCAT 59.072 36.000 0.00 0.00 0.00 2.90
281 282 5.163468 TGCTTGCTTGTAAATTTTGTCCTCA 60.163 36.000 0.00 0.00 0.00 3.86
282 283 5.175673 GTGCTTGCTTGTAAATTTTGTCCTC 59.824 40.000 0.00 0.00 0.00 3.71
283 284 5.049828 GTGCTTGCTTGTAAATTTTGTCCT 58.950 37.500 0.00 0.00 0.00 3.85
284 285 4.211164 GGTGCTTGCTTGTAAATTTTGTCC 59.789 41.667 0.00 0.00 0.00 4.02
285 286 4.808364 TGGTGCTTGCTTGTAAATTTTGTC 59.192 37.500 0.00 0.00 0.00 3.18
286 287 4.764172 TGGTGCTTGCTTGTAAATTTTGT 58.236 34.783 0.00 0.00 0.00 2.83
287 288 5.106987 GGATGGTGCTTGCTTGTAAATTTTG 60.107 40.000 0.00 0.00 0.00 2.44
288 289 4.996758 GGATGGTGCTTGCTTGTAAATTTT 59.003 37.500 0.00 0.00 0.00 1.82
289 290 4.563374 GGGATGGTGCTTGCTTGTAAATTT 60.563 41.667 0.00 0.00 0.00 1.82
290 291 3.055891 GGGATGGTGCTTGCTTGTAAATT 60.056 43.478 0.00 0.00 0.00 1.82
291 292 2.497273 GGGATGGTGCTTGCTTGTAAAT 59.503 45.455 0.00 0.00 0.00 1.40
292 293 1.892474 GGGATGGTGCTTGCTTGTAAA 59.108 47.619 0.00 0.00 0.00 2.01
293 294 1.202989 TGGGATGGTGCTTGCTTGTAA 60.203 47.619 0.00 0.00 0.00 2.41
294 295 0.403655 TGGGATGGTGCTTGCTTGTA 59.596 50.000 0.00 0.00 0.00 2.41
295 296 0.896940 CTGGGATGGTGCTTGCTTGT 60.897 55.000 0.00 0.00 0.00 3.16
296 297 1.888018 CTGGGATGGTGCTTGCTTG 59.112 57.895 0.00 0.00 0.00 4.01
297 298 1.980772 GCTGGGATGGTGCTTGCTT 60.981 57.895 0.00 0.00 0.00 3.91
298 299 2.362120 GCTGGGATGGTGCTTGCT 60.362 61.111 0.00 0.00 0.00 3.91
299 300 1.980772 AAGCTGGGATGGTGCTTGC 60.981 57.895 0.00 0.00 44.16 4.01
300 301 4.428845 AAGCTGGGATGGTGCTTG 57.571 55.556 0.00 0.00 44.16 4.01
301 302 1.304713 CCAAGCTGGGATGGTGCTT 60.305 57.895 0.00 0.00 46.38 3.91
302 303 2.357836 CCAAGCTGGGATGGTGCT 59.642 61.111 0.00 0.00 38.87 4.40
306 307 0.256752 TCATGACCAAGCTGGGATGG 59.743 55.000 16.25 7.50 43.37 3.51
307 308 1.676746 CTCATGACCAAGCTGGGATG 58.323 55.000 16.25 8.42 43.37 3.51
308 309 0.106819 GCTCATGACCAAGCTGGGAT 60.107 55.000 16.25 0.00 43.37 3.85
309 310 1.203441 AGCTCATGACCAAGCTGGGA 61.203 55.000 16.25 0.00 46.78 4.37
310 311 1.302285 AGCTCATGACCAAGCTGGG 59.698 57.895 5.25 5.25 46.78 4.45
314 315 0.034670 AGGGAAGCTCATGACCAAGC 60.035 55.000 0.00 0.00 38.84 4.01
315 316 2.503895 AAGGGAAGCTCATGACCAAG 57.496 50.000 0.00 0.00 0.00 3.61
316 317 2.555227 GGAAAGGGAAGCTCATGACCAA 60.555 50.000 0.00 0.00 0.00 3.67
317 318 1.004745 GGAAAGGGAAGCTCATGACCA 59.995 52.381 0.00 0.00 0.00 4.02
318 319 1.004745 TGGAAAGGGAAGCTCATGACC 59.995 52.381 0.00 0.00 0.00 4.02
319 320 2.496899 TGGAAAGGGAAGCTCATGAC 57.503 50.000 0.00 0.00 0.00 3.06
320 321 2.357465 CCATGGAAAGGGAAGCTCATGA 60.357 50.000 5.56 0.00 35.38 3.07
321 322 2.029623 CCATGGAAAGGGAAGCTCATG 58.970 52.381 5.56 0.00 33.78 3.07
322 323 1.687368 GCCATGGAAAGGGAAGCTCAT 60.687 52.381 18.40 0.00 0.00 2.90
323 324 0.323725 GCCATGGAAAGGGAAGCTCA 60.324 55.000 18.40 0.00 0.00 4.26
324 325 0.033699 AGCCATGGAAAGGGAAGCTC 60.034 55.000 18.40 0.00 0.00 4.09
325 326 0.324091 CAGCCATGGAAAGGGAAGCT 60.324 55.000 18.40 0.00 0.00 3.74
326 327 1.953231 GCAGCCATGGAAAGGGAAGC 61.953 60.000 18.40 2.69 0.00 3.86
327 328 0.612732 TGCAGCCATGGAAAGGGAAG 60.613 55.000 18.40 0.00 0.00 3.46
328 329 0.178938 TTGCAGCCATGGAAAGGGAA 60.179 50.000 18.40 5.57 33.33 3.97
329 330 0.041535 ATTGCAGCCATGGAAAGGGA 59.958 50.000 18.40 0.00 40.42 4.20
330 331 0.462789 GATTGCAGCCATGGAAAGGG 59.537 55.000 18.40 0.00 40.42 3.95
331 332 0.101759 CGATTGCAGCCATGGAAAGG 59.898 55.000 18.40 1.64 40.42 3.11
332 333 0.526954 GCGATTGCAGCCATGGAAAG 60.527 55.000 18.40 4.92 40.42 2.62
333 334 1.512230 GCGATTGCAGCCATGGAAA 59.488 52.632 18.40 3.87 40.42 3.13
334 335 3.199551 GCGATTGCAGCCATGGAA 58.800 55.556 18.40 0.00 41.35 3.53
341 342 3.695022 CTTGCTGGGCGATTGCAGC 62.695 63.158 7.38 8.76 45.35 5.25
342 343 1.870055 AACTTGCTGGGCGATTGCAG 61.870 55.000 7.38 0.00 45.35 4.41
343 344 1.462731 AAACTTGCTGGGCGATTGCA 61.463 50.000 7.38 0.00 45.35 4.08
344 345 1.010419 CAAACTTGCTGGGCGATTGC 61.010 55.000 0.00 0.00 41.71 3.56
345 346 0.314935 ACAAACTTGCTGGGCGATTG 59.685 50.000 0.00 0.00 0.00 2.67
346 347 0.598065 GACAAACTTGCTGGGCGATT 59.402 50.000 0.00 0.00 0.00 3.34
347 348 1.244019 GGACAAACTTGCTGGGCGAT 61.244 55.000 0.00 0.00 0.00 4.58
348 349 1.896660 GGACAAACTTGCTGGGCGA 60.897 57.895 0.00 0.00 0.00 5.54
349 350 2.133742 CTGGACAAACTTGCTGGGCG 62.134 60.000 0.00 0.00 0.00 6.13
350 351 1.662044 CTGGACAAACTTGCTGGGC 59.338 57.895 0.00 0.00 0.00 5.36
351 352 1.181098 CCCTGGACAAACTTGCTGGG 61.181 60.000 0.00 0.00 0.00 4.45
352 353 0.468029 ACCCTGGACAAACTTGCTGG 60.468 55.000 0.00 0.00 0.00 4.85
353 354 2.154462 CTACCCTGGACAAACTTGCTG 58.846 52.381 0.00 0.00 0.00 4.41
354 355 1.073923 CCTACCCTGGACAAACTTGCT 59.926 52.381 0.00 0.00 0.00 3.91
355 356 1.534729 CCTACCCTGGACAAACTTGC 58.465 55.000 0.00 0.00 0.00 4.01
356 357 1.073923 AGCCTACCCTGGACAAACTTG 59.926 52.381 0.00 0.00 0.00 3.16
357 358 1.073923 CAGCCTACCCTGGACAAACTT 59.926 52.381 0.00 0.00 0.00 2.66
358 359 0.693049 CAGCCTACCCTGGACAAACT 59.307 55.000 0.00 0.00 0.00 2.66
359 360 0.960861 GCAGCCTACCCTGGACAAAC 60.961 60.000 0.00 0.00 33.44 2.93
360 361 1.378762 GCAGCCTACCCTGGACAAA 59.621 57.895 0.00 0.00 33.44 2.83
361 362 1.207488 ATGCAGCCTACCCTGGACAA 61.207 55.000 0.00 0.00 35.97 3.18
362 363 1.616327 ATGCAGCCTACCCTGGACA 60.616 57.895 0.00 0.00 35.97 4.02
363 364 1.153086 CATGCAGCCTACCCTGGAC 60.153 63.158 0.00 0.00 35.97 4.02
364 365 2.377810 CCATGCAGCCTACCCTGGA 61.378 63.158 0.00 0.00 37.58 3.86
365 366 1.925285 TTCCATGCAGCCTACCCTGG 61.925 60.000 0.00 0.00 33.44 4.45
366 367 0.749454 GTTCCATGCAGCCTACCCTG 60.749 60.000 0.00 0.00 35.93 4.45
367 368 1.207488 TGTTCCATGCAGCCTACCCT 61.207 55.000 0.00 0.00 0.00 4.34
368 369 0.323360 TTGTTCCATGCAGCCTACCC 60.323 55.000 0.00 0.00 0.00 3.69
369 370 0.811281 GTTGTTCCATGCAGCCTACC 59.189 55.000 0.00 0.00 0.00 3.18
370 371 1.533625 TGTTGTTCCATGCAGCCTAC 58.466 50.000 0.00 0.00 0.00 3.18
371 372 2.161855 CTTGTTGTTCCATGCAGCCTA 58.838 47.619 0.00 0.00 0.00 3.93
372 373 0.963962 CTTGTTGTTCCATGCAGCCT 59.036 50.000 0.00 0.00 0.00 4.58
373 374 0.668401 GCTTGTTGTTCCATGCAGCC 60.668 55.000 0.00 0.00 36.01 4.85
374 375 0.032403 TGCTTGTTGTTCCATGCAGC 59.968 50.000 0.00 0.00 39.65 5.25
375 376 1.338973 AGTGCTTGTTGTTCCATGCAG 59.661 47.619 0.00 0.00 43.50 4.41
424 427 4.460382 ACAATCCAAACTACCATTCTGCTG 59.540 41.667 0.00 0.00 0.00 4.41
494 521 5.694006 GCATGATATACTCACTCAGTTCCAC 59.306 44.000 0.00 0.00 36.48 4.02
678 757 4.020307 TCTCTGCCACATATCAAACTGACA 60.020 41.667 0.00 0.00 0.00 3.58
848 2341 2.443577 GGGACGGAGGGGGAGTAC 60.444 72.222 0.00 0.00 0.00 2.73
849 2342 2.330209 ATGGGACGGAGGGGGAGTA 61.330 63.158 0.00 0.00 0.00 2.59
850 2343 3.695825 ATGGGACGGAGGGGGAGT 61.696 66.667 0.00 0.00 0.00 3.85
851 2344 2.972589 ATCATGGGACGGAGGGGGAG 62.973 65.000 0.00 0.00 0.00 4.30
852 2345 1.670925 TATCATGGGACGGAGGGGGA 61.671 60.000 0.00 0.00 0.00 4.81
853 2346 0.547712 ATATCATGGGACGGAGGGGG 60.548 60.000 0.00 0.00 0.00 5.40
854 2347 2.247699 TATATCATGGGACGGAGGGG 57.752 55.000 0.00 0.00 0.00 4.79
855 2348 3.441101 TCTTATATCATGGGACGGAGGG 58.559 50.000 0.00 0.00 0.00 4.30
856 2349 4.618460 CGTTCTTATATCATGGGACGGAGG 60.618 50.000 0.00 0.00 0.00 4.30
857 2350 4.022242 ACGTTCTTATATCATGGGACGGAG 60.022 45.833 3.74 0.00 0.00 4.63
858 2351 3.893200 ACGTTCTTATATCATGGGACGGA 59.107 43.478 3.74 0.00 0.00 4.69
859 2352 4.252971 ACGTTCTTATATCATGGGACGG 57.747 45.455 3.74 0.00 0.00 4.79
860 2353 6.598753 AAAACGTTCTTATATCATGGGACG 57.401 37.500 0.00 0.00 0.00 4.79
861 2354 7.908601 GTCAAAAACGTTCTTATATCATGGGAC 59.091 37.037 0.00 0.00 0.00 4.46
862 2355 7.608376 TGTCAAAAACGTTCTTATATCATGGGA 59.392 33.333 0.00 0.00 0.00 4.37
863 2356 7.696453 GTGTCAAAAACGTTCTTATATCATGGG 59.304 37.037 0.00 0.00 0.00 4.00
864 2357 8.450964 AGTGTCAAAAACGTTCTTATATCATGG 58.549 33.333 0.00 0.00 0.00 3.66
867 2360 9.478768 TGTAGTGTCAAAAACGTTCTTATATCA 57.521 29.630 0.00 0.00 0.00 2.15
868 2361 9.737025 GTGTAGTGTCAAAAACGTTCTTATATC 57.263 33.333 0.00 0.00 0.00 1.63
869 2362 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
870 2363 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
871 2364 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
872 2365 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
873 2366 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
874 2367 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
875 2368 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
888 2381 3.800531 ACGTTTTTGGCACTAGTGTAGT 58.199 40.909 23.44 9.54 40.28 2.73
889 2382 4.510340 AGAACGTTTTTGGCACTAGTGTAG 59.490 41.667 23.44 8.99 0.00 2.74
890 2383 4.444536 AGAACGTTTTTGGCACTAGTGTA 58.555 39.130 23.44 10.89 0.00 2.90
891 2384 3.275999 AGAACGTTTTTGGCACTAGTGT 58.724 40.909 23.44 0.00 0.00 3.55
892 2385 3.963383 AGAACGTTTTTGGCACTAGTG 57.037 42.857 18.93 18.93 0.00 2.74
893 2386 7.916914 ATATAAGAACGTTTTTGGCACTAGT 57.083 32.000 13.87 0.00 0.00 2.57
896 2389 8.188139 CCATAATATAAGAACGTTTTTGGCACT 58.812 33.333 13.87 0.00 0.00 4.40
897 2390 7.434013 CCCATAATATAAGAACGTTTTTGGCAC 59.566 37.037 13.87 0.00 0.00 5.01
898 2391 7.339721 TCCCATAATATAAGAACGTTTTTGGCA 59.660 33.333 13.87 0.01 0.00 4.92
899 2392 7.646526 GTCCCATAATATAAGAACGTTTTTGGC 59.353 37.037 13.87 0.00 0.00 4.52
900 2393 8.679100 TGTCCCATAATATAAGAACGTTTTTGG 58.321 33.333 13.87 5.54 0.00 3.28
901 2394 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
902 2395 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
903 2396 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
904 2397 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
905 2398 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
906 2399 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
907 2400 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
908 2401 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
909 2402 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
910 2403 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
911 2404 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
912 2405 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
913 2406 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
914 2407 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
915 2408 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
916 2409 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
917 2410 5.681494 ATACTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
918 2411 6.791847 TTATACTACTCCCTCTGTCCCATA 57.208 41.667 0.00 0.00 0.00 2.74
919 2412 5.681494 TTATACTACTCCCTCTGTCCCAT 57.319 43.478 0.00 0.00 0.00 4.00
920 2413 5.455872 CTTTATACTACTCCCTCTGTCCCA 58.544 45.833 0.00 0.00 0.00 4.37
921 2414 4.281435 GCTTTATACTACTCCCTCTGTCCC 59.719 50.000 0.00 0.00 0.00 4.46
922 2415 5.141910 AGCTTTATACTACTCCCTCTGTCC 58.858 45.833 0.00 0.00 0.00 4.02
923 2416 6.718522 AAGCTTTATACTACTCCCTCTGTC 57.281 41.667 0.00 0.00 0.00 3.51
924 2417 7.288158 CCTAAAGCTTTATACTACTCCCTCTGT 59.712 40.741 18.93 0.00 0.00 3.41
925 2418 7.288158 ACCTAAAGCTTTATACTACTCCCTCTG 59.712 40.741 18.93 2.85 0.00 3.35
926 2419 7.288158 CACCTAAAGCTTTATACTACTCCCTCT 59.712 40.741 18.93 0.00 0.00 3.69
927 2420 7.069702 ACACCTAAAGCTTTATACTACTCCCTC 59.930 40.741 18.93 0.00 0.00 4.30
928 2421 6.901857 ACACCTAAAGCTTTATACTACTCCCT 59.098 38.462 18.93 0.00 0.00 4.20
929 2422 7.122138 ACACCTAAAGCTTTATACTACTCCC 57.878 40.000 18.93 0.00 0.00 4.30
930 2423 9.096160 GAAACACCTAAAGCTTTATACTACTCC 57.904 37.037 18.93 3.10 0.00 3.85
931 2424 9.872721 AGAAACACCTAAAGCTTTATACTACTC 57.127 33.333 18.93 11.82 0.00 2.59
1161 2658 1.155889 TGCGGTATTTGAGTGCACAG 58.844 50.000 21.04 0.00 0.00 3.66
1183 2680 1.968017 CTGTGCCACAGTCGCCATT 60.968 57.895 16.78 0.00 41.19 3.16
1323 2820 3.531538 TGTACCATTGAAGAGCCGAATC 58.468 45.455 0.00 0.00 0.00 2.52
1380 2877 2.040544 GGAACCATCCACCACAGCG 61.041 63.158 0.00 0.00 45.79 5.18
1564 3061 2.749076 TCATTCAAGCGCTGCAATAAGT 59.251 40.909 12.58 0.00 0.00 2.24
1660 3158 9.059260 GTAAAGATACCCTAAACAGTTCAACAA 57.941 33.333 0.00 0.00 0.00 2.83
1706 3204 9.307121 CACTAGATAATTTAACAGTGTCCAGAG 57.693 37.037 0.00 0.00 31.06 3.35
1709 3207 7.620880 AGCACTAGATAATTTAACAGTGTCCA 58.379 34.615 0.00 0.00 36.59 4.02
1710 3208 7.982354 AGAGCACTAGATAATTTAACAGTGTCC 59.018 37.037 0.00 8.04 36.59 4.02
1711 3209 8.934507 AGAGCACTAGATAATTTAACAGTGTC 57.065 34.615 0.00 10.33 36.59 3.67
1717 3215 9.103861 AGCAAGAAGAGCACTAGATAATTTAAC 57.896 33.333 0.00 0.00 0.00 2.01
1718 3216 9.672673 AAGCAAGAAGAGCACTAGATAATTTAA 57.327 29.630 0.00 0.00 0.00 1.52
1720 3218 9.323985 CTAAGCAAGAAGAGCACTAGATAATTT 57.676 33.333 0.00 0.00 0.00 1.82
1721 3219 7.440856 GCTAAGCAAGAAGAGCACTAGATAATT 59.559 37.037 0.00 0.00 34.96 1.40
1722 3220 6.928492 GCTAAGCAAGAAGAGCACTAGATAAT 59.072 38.462 0.00 0.00 34.96 1.28
1723 3221 6.127338 TGCTAAGCAAGAAGAGCACTAGATAA 60.127 38.462 0.00 0.00 39.93 1.75
1752 3313 0.771127 AGCCCTAGTTCACCAAGCAA 59.229 50.000 0.00 0.00 0.00 3.91
1925 3501 7.225734 GCACTAAGCTTTCCCAACAAAAATTAA 59.774 33.333 3.20 0.00 41.15 1.40
1926 3502 6.704050 GCACTAAGCTTTCCCAACAAAAATTA 59.296 34.615 3.20 0.00 41.15 1.40
1967 3543 7.753309 TGTAAGCACTATGGCTAAAAGAAAA 57.247 32.000 0.00 0.00 45.07 2.29
1968 3544 7.829211 AGATGTAAGCACTATGGCTAAAAGAAA 59.171 33.333 0.00 0.00 45.07 2.52
2018 3595 5.017490 TGGACTCCCTAAAGAAGTGTCTAG 58.983 45.833 0.00 0.00 32.16 2.43
2020 3597 3.858135 TGGACTCCCTAAAGAAGTGTCT 58.142 45.455 0.00 0.00 34.72 3.41
2032 3609 6.940430 AATTTGATCATTTTTGGACTCCCT 57.060 33.333 0.00 0.00 0.00 4.20
2033 3610 7.984422 AAAATTTGATCATTTTTGGACTCCC 57.016 32.000 13.27 0.00 33.38 4.30
2047 3624 8.514136 TCCACGAACACATTAAAAATTTGATC 57.486 30.769 0.00 0.00 0.00 2.92
2057 3634 4.513692 CCTCAAACTCCACGAACACATTAA 59.486 41.667 0.00 0.00 0.00 1.40
2058 3635 4.062293 CCTCAAACTCCACGAACACATTA 58.938 43.478 0.00 0.00 0.00 1.90
2061 3638 1.474320 CCCTCAAACTCCACGAACACA 60.474 52.381 0.00 0.00 0.00 3.72
2067 3644 2.359975 GCCCCCTCAAACTCCACG 60.360 66.667 0.00 0.00 0.00 4.94
2093 3670 1.669211 GGTGGACCGAAAGAGAACGAG 60.669 57.143 0.00 0.00 0.00 4.18
2491 4070 1.269413 ACCCGTTAGATACAATCGCGG 60.269 52.381 6.13 11.07 40.67 6.46
2494 4073 5.632347 GGACATAACCCGTTAGATACAATCG 59.368 44.000 0.00 0.00 0.00 3.34
2553 4132 1.045407 AAACCACTGACTGCCTCGTA 58.955 50.000 0.00 0.00 0.00 3.43
2558 4137 3.733443 ATTGAAAAACCACTGACTGCC 57.267 42.857 0.00 0.00 0.00 4.85
2561 4140 4.398044 ACGACAATTGAAAAACCACTGACT 59.602 37.500 13.59 0.00 0.00 3.41
2582 4161 4.792189 GGAGTTGTCGTAGAGTATTGAACG 59.208 45.833 0.00 0.00 36.95 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.