AutoCloner

Multiple sequence alignment - TraesCS7A01G436700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G436700	chr7A	100.000	2649	0	0	1	2649	631515794	631518442	0.000000e+00	4892.0
1	TraesCS7A01G436700	chr7A	96.372	441	16	0	1239	1679	734537400	734536960	0.000000e+00	726.0
2	TraesCS7A01G436700	chr7A	78.092	283	54	7	2268	2546	453446007	453446285	3.510000e-39	172.0
3	TraesCS7A01G436700	chr7A	78.339	277	52	6	2274	2546	700431489	700431217	3.510000e-39	172.0
4	TraesCS7A01G436700	chr7A	77.739	283	55	8	2268	2546	498484867	498485145	1.630000e-37	167.0
5	TraesCS7A01G436700	chr7A	79.562	137	20	7	1683	1814	631511575	631511442	1.010000e-14	91.6
6	TraesCS7A01G436700	chr2B	90.824	1700	127	21	1	1679	577433390	577435081	0.000000e+00	2248.0
7	TraesCS7A01G436700	chr2B	91.467	750	58	5	743	1487	576819650	576820398	0.000000e+00	1026.0
8	TraesCS7A01G436700	chr2B	91.386	743	61	3	1	742	576818879	576819619	0.000000e+00	1014.0
9	TraesCS7A01G436700	chr2B	91.371	197	17	0	1483	1679	576829622	576829818	1.210000e-68	270.0
10	TraesCS7A01G436700	chr2A	95.435	942	38	4	743	1679	73526449	73527390	0.000000e+00	1496.0
11	TraesCS7A01G436700	chr2A	94.946	554	28	0	189	742	73525866	73526419	0.000000e+00	869.0
12	TraesCS7A01G436700	chr2A	93.143	175	12	0	1334	1508	758501509	758501335	9.410000e-65	257.0
13	TraesCS7A01G436700	chr2A	92.529	174	13	0	1501	1674	758501077	758500904	1.570000e-62	250.0
14	TraesCS7A01G436700	chr2A	79.310	145	23	5	1677	1814	17613444	17613300	7.810000e-16	95.3
15	TraesCS7A01G436700	chr1A	95.435	942	38	4	743	1679	521235981	521236922	0.000000e+00	1496.0
16	TraesCS7A01G436700	chr1A	95.289	743	34	1	1	742	521235209	521235951	0.000000e+00	1177.0
17	TraesCS7A01G436700	chr1D	94.586	942	46	4	743	1679	420198344	420197403	0.000000e+00	1452.0
18	TraesCS7A01G436700	chr1D	96.097	743	28	1	1	742	420199116	420198374	0.000000e+00	1210.0
19	TraesCS7A01G436700	chr1D	83.591	323	34	12	2280	2596	10695146	10695455	4.320000e-73	285.0
20	TraesCS7A01G436700	chr1D	90.164	61	6	0	1763	1823	26259593	26259533	2.190000e-11	80.5
21	TraesCS7A01G436700	chr6B	92.603	730	51	2	953	1679	113299382	113300111	0.000000e+00	1046.0
22	TraesCS7A01G436700	chr7D	93.867	375	15	2	2275	2649	547398138	547397772	2.300000e-155	558.0
23	TraesCS7A01G436700	chr7D	90.625	384	24	7	1899	2275	547398560	547398182	1.420000e-137	499.0
24	TraesCS7A01G436700	chr7D	90.179	224	19	3	1677	1898	547402658	547402436	3.340000e-74	289.0
25	TraesCS7A01G436700	chr7D	79.688	128	16	8	1695	1814	547402770	547402895	1.690000e-12	84.2
26	TraesCS7A01G436700	chr3B	80.000	750	90	32	1	735	755219978	755219274	1.420000e-137	499.0
27	TraesCS7A01G436700	chr3B	78.065	155	24	8	1677	1826	132624627	132624478	3.630000e-14	89.8
28	TraesCS7A01G436700	chr6A	83.728	338	42	7	2310	2641	53909058	53908728	9.210000e-80	307.0
29	TraesCS7A01G436700	chr6A	78.808	302	49	11	2344	2639	222686857	222687149	3.480000e-44	189.0
30	TraesCS7A01G436700	chr1B	80.636	346	52	15	2279	2617	24096897	24097234	1.220000e-63	254.0
31	TraesCS7A01G436700	chr2D	84.071	226	29	6	2280	2500	453627159	453627382	7.430000e-51	211.0
32	TraesCS7A01G436700	chr2D	76.623	154	27	5	1669	1814	9916799	9916951	2.830000e-10	76.8
33	TraesCS7A01G436700	chr4D	84.211	152	17	6	1678	1824	461221375	461221226	9.890000e-30	141.0
34	TraesCS7A01G436700	chr6D	92.308	91	5	2	1454	1543	60225521	60225432	7.700000e-26	128.0
35	TraesCS7A01G436700	chr4A	97.222	36	1	0	232	267	735804843	735804878	7.920000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G436700	chr7A	631515794	631518442	2648	False	4892.000000	4892	100.0000	1	2649	1	chr7A.!!$F3	2648
1	TraesCS7A01G436700	chr2B	577433390	577435081	1691	False	2248.000000	2248	90.8240	1	1679	1	chr2B.!!$F2	1678
2	TraesCS7A01G436700	chr2B	576818879	576820398	1519	False	1020.000000	1026	91.4265	1	1487	2	chr2B.!!$F3	1486
3	TraesCS7A01G436700	chr2A	73525866	73527390	1524	False	1182.500000	1496	95.1905	189	1679	2	chr2A.!!$F1	1490
4	TraesCS7A01G436700	chr2A	758500904	758501509	605	True	253.500000	257	92.8360	1334	1674	2	chr2A.!!$R2	340
5	TraesCS7A01G436700	chr1A	521235209	521236922	1713	False	1336.500000	1496	95.3620	1	1679	2	chr1A.!!$F1	1678
6	TraesCS7A01G436700	chr1D	420197403	420199116	1713	True	1331.000000	1452	95.3415	1	1679	2	chr1D.!!$R2	1678
7	TraesCS7A01G436700	chr6B	113299382	113300111	729	False	1046.000000	1046	92.6030	953	1679	1	chr6B.!!$F1	726
8	TraesCS7A01G436700	chr7D	547397772	547402658	4886	True	448.666667	558	91.5570	1677	2649	3	chr7D.!!$R1	972
9	TraesCS7A01G436700	chr3B	755219274	755219978	704	True	499.000000	499	80.0000	1	735	1	chr3B.!!$R2	734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
145	153	1.037579	GCAGGAGGCATGGGGTTTAC	61.038	60.0	0.00	0.0	43.97	2.01	F
301	312	1.533625	AAAGGCAGCTCGCATGTTTA	58.466	45.0	9.78	0.0	45.17	2.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1082	1136	0.032678	ATCAGATCCGATGCCGTGAC	59.967	55.0	0.0	0.0	0.00	3.67	R
1988	6188	0.172352	ACAACAAAGTGCAACACGGG	59.828	50.0	0.0	0.0	41.43	5.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	7.502226	TGGAAGAAGTTAACAACATCAATGTCT	59.498	33.333	8.61	0.00	40.80	3.41
58	59	6.624423	ACAACATCAATGTCTAGATTTTGGC	58.376	36.000	14.23	0.00	40.80	4.52
62	63	3.054728	TCAATGTCTAGATTTTGGCGGGA	60.055	43.478	14.23	0.00	0.00	5.14
82	90	3.586618	GGAAGGGATGGAGATAAGCAGAT	59.413	47.826	0.00	0.00	0.00	2.90
145	153	1.037579	GCAGGAGGCATGGGGTTTAC	61.038	60.000	0.00	0.00	43.97	2.01
226	234	7.950512	ACAAAACCAGAATCATTATGTTCACA	58.049	30.769	9.09	0.00	0.00	3.58
301	312	1.533625	AAAGGCAGCTCGCATGTTTA	58.466	45.000	9.78	0.00	45.17	2.01
307	318	1.733912	CAGCTCGCATGTTTAGCAAGA	59.266	47.619	15.36	0.00	38.75	3.02
371	383	7.210174	TCAAAAGAATAGGTGATGGTCTATCG	58.790	38.462	0.00	0.00	38.71	2.92
411	423	3.662759	GGTGGATACCAAGGATTCCAA	57.337	47.619	13.62	0.73	46.71	3.53
450	462	7.521509	TTTAAGAGCGAAGAAGTAACTATGC	57.478	36.000	0.00	0.00	0.00	3.14
451	463	4.720649	AGAGCGAAGAAGTAACTATGCA	57.279	40.909	0.00	0.00	0.00	3.96
459	472	7.059602	GCGAAGAAGTAACTATGCAAAAAGTTC	59.940	37.037	13.74	6.56	37.19	3.01
462	475	8.232913	AGAAGTAACTATGCAAAAAGTTCCAA	57.767	30.769	13.74	0.00	37.19	3.53
488	501	6.207025	AGCTCATTAATGATGATGGAAGAAGC	59.793	38.462	18.26	12.86	43.59	3.86
680	697	5.702670	TGAAAGTCAACATCATCAAGGAGTC	59.297	40.000	0.00	0.00	0.00	3.36
736	754	4.023291	TGGAAGAAACTTTGGAGCTTGTT	58.977	39.130	0.00	0.00	0.00	2.83
822	872	8.911918	ATTAAGTAACTGTGTTGAATGTGGTA	57.088	30.769	0.00	0.00	0.00	3.25
836	886	7.624360	TGAATGTGGTACAAATGAAGATACC	57.376	36.000	0.00	0.00	44.16	2.73
888	940	4.145807	TGCCCGAGTTTTCTGGAATTTTA	58.854	39.130	0.00	0.00	29.74	1.52
890	942	5.245075	TGCCCGAGTTTTCTGGAATTTTATT	59.755	36.000	0.00	0.00	29.74	1.40
891	943	6.163476	GCCCGAGTTTTCTGGAATTTTATTT	58.837	36.000	0.00	0.00	29.74	1.40
930	982	5.836024	TTAGGTTCCCAAACTACATCACT	57.164	39.130	0.00	0.00	35.61	3.41
931	983	6.938698	TTAGGTTCCCAAACTACATCACTA	57.061	37.500	0.00	0.00	35.61	2.74
933	985	5.557866	AGGTTCCCAAACTACATCACTAAC	58.442	41.667	0.00	0.00	35.61	2.34
934	986	5.309806	AGGTTCCCAAACTACATCACTAACT	59.690	40.000	0.00	0.00	35.61	2.24
957	1011	3.118261	TGGCCCAAGACATTCTAGATGAC	60.118	47.826	0.00	0.00	0.00	3.06
978	1032	3.112580	CGAAGTTTGTGCAACGGAAAAT	58.887	40.909	0.00	0.00	42.39	1.82
991	1045	5.630680	GCAACGGAAAATGCAGGATATATTG	59.369	40.000	0.00	0.00	42.12	1.90
1251	1307	4.800023	TCAGGGGTAATAATCAGAGACGA	58.200	43.478	0.00	0.00	0.00	4.20
1270	1326	2.223805	CGATGATGGCACTGTAGTAGCA	60.224	50.000	0.00	0.00	0.00	3.49
1387	1443	1.177401	GGCAAGGAACAATGGAGACC	58.823	55.000	0.00	0.00	0.00	3.85
1530	1852	7.292356	TCATGTTAAGAGGGAGGCAAATATAGA	59.708	37.037	0.00	0.00	0.00	1.98
1556	1878	5.016051	TCACAAAGTTGCCAAATTTGCTA	57.984	34.783	25.20	13.72	37.42	3.49
1598	1920	1.610967	TGGATACACCAGGTGCCGA	60.611	57.895	20.48	5.67	46.17	5.54
1675	1997	3.549299	AGCTCTTGTTTGAATCGCAAG	57.451	42.857	5.93	5.93	40.47	4.01
1740	2062	5.981088	ACATCAATGTGTCTTGCCATAAA	57.019	34.783	0.00	0.00	40.03	1.40
1743	2065	7.388437	ACATCAATGTGTCTTGCCATAAAAAT	58.612	30.769	0.00	0.00	40.03	1.82
1744	2066	7.332430	ACATCAATGTGTCTTGCCATAAAAATG	59.668	33.333	0.00	0.00	40.03	2.32
1747	2069	5.149973	TGTGTCTTGCCATAAAAATGCAT	57.850	34.783	0.00	0.00	34.51	3.96
1753	2075	9.881649	TGTCTTGCCATAAAAATGCATATTTTA	57.118	25.926	19.66	19.66	43.74	1.52
1789	2112	6.978343	TTTACAATTGTACTCTTCATCCGG	57.022	37.500	17.85	0.00	0.00	5.14
1790	2113	3.873910	ACAATTGTACTCTTCATCCGGG	58.126	45.455	9.97	0.00	0.00	5.73
1806	2129	2.801631	GGGATCACTGGAGCTCGGG	61.802	68.421	7.83	5.32	0.00	5.14
1814	2137	0.249784	CTGGAGCTCGGGATCACATG	60.250	60.000	1.57	0.00	0.00	3.21
1815	2138	0.687427	TGGAGCTCGGGATCACATGA	60.687	55.000	1.57	0.00	0.00	3.07
1823	2146	4.759782	CTCGGGATCACATGAGTACTTTT	58.240	43.478	0.00	0.00	0.00	2.27
1826	2149	4.330074	CGGGATCACATGAGTACTTTTGTC	59.670	45.833	0.00	0.00	0.00	3.18
1907	6106	6.540914	TCTCGTAATTACTGCATTTTTAGGGG	59.459	38.462	13.56	0.00	0.00	4.79
1915	6114	5.014202	ACTGCATTTTTAGGGGTTCGTAAT	58.986	37.500	0.00	0.00	0.00	1.89
1931	6130	4.058124	TCGTAATTACTGCATGAGATGGC	58.942	43.478	13.56	0.00	0.00	4.40
2011	6213	2.671596	GTGTTGCACTTTGTTGTGTGT	58.328	42.857	0.00	0.00	39.89	3.72
2064	6266	6.016276	TGACTCTTAAATCCTTTTCTGGCAAC	60.016	38.462	0.00	0.00	0.00	4.17
2097	6303	5.590530	AAACCAGACAACTTGCACATAAA	57.409	34.783	0.00	0.00	0.00	1.40
2106	6312	8.292448	AGACAACTTGCACATAAAGTCAATAAG	58.708	33.333	0.00	0.00	36.87	1.73
2142	6348	4.466567	TGTAAACACAGCACAATCGAAG	57.533	40.909	0.00	0.00	0.00	3.79
2167	6373	4.628766	CGATTGCATAGACTCACCCATATG	59.371	45.833	0.00	0.00	0.00	1.78
2172	6378	4.501571	GCATAGACTCACCCATATGAACGT	60.502	45.833	3.65	0.00	0.00	3.99
2174	6380	6.572509	GCATAGACTCACCCATATGAACGTAT	60.573	42.308	3.65	0.00	0.00	3.06
2176	6382	4.649674	AGACTCACCCATATGAACGTATGT	59.350	41.667	3.65	0.41	31.55	2.29
2179	6385	5.361571	ACTCACCCATATGAACGTATGTACA	59.638	40.000	3.65	0.00	31.55	2.90
2191	6397	5.458041	ACGTATGTACATACACCATACCC	57.542	43.478	34.07	13.35	42.82	3.69
2192	6398	5.142639	ACGTATGTACATACACCATACCCT	58.857	41.667	34.07	10.74	42.82	4.34
2199	6405	6.779049	TGTACATACACCATACCCTTACTAGG	59.221	42.308	0.00	0.00	41.60	3.02
2217	6423	1.002624	GAGAATGCCCGTGGGTTGA	60.003	57.895	6.82	0.00	37.65	3.18
2221	6427	0.329931	AATGCCCGTGGGTTGATACA	59.670	50.000	6.82	0.00	37.65	2.29
2318	6568	6.071447	CGACATAATCCATCTCCATCTCTCTT	60.071	42.308	0.00	0.00	0.00	2.85
2460	6710	2.057830	CCGGCCCATCATAGTAGCA	58.942	57.895	0.00	0.00	0.00	3.49
2472	6722	7.879677	CCCATCATAGTAGCATCAATGACTTTA	59.120	37.037	0.00	0.00	31.56	1.85
2518	6768	9.208022	CATCATCAGAAGCTATCCGTTTTTATA	57.792	33.333	0.00	0.00	0.00	0.98
2520	6770	9.778741	TCATCAGAAGCTATCCGTTTTTATATT	57.221	29.630	0.00	0.00	0.00	1.28
2643	6893	4.985409	CCACTTTTAGTCACAGTGAGTCTC	59.015	45.833	14.53	0.00	40.43	3.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	1.291109	TCCCTTCCCGCCAAAATCTA	58.709	50.000	0.00	0.00	0.00	1.98
58	59	1.002544	GCTTATCTCCATCCCTTCCCG	59.997	57.143	0.00	0.00	0.00	5.14
62	63	6.719301	CAATATCTGCTTATCTCCATCCCTT	58.281	40.000	0.00	0.00	0.00	3.95
82	90	5.898397	TCATCCCATTTCTTCCAATGCAATA	59.102	36.000	0.00	0.00	33.42	1.90
145	153	8.469200	TGGCTAAATTGAATAACTGGAGATTTG	58.531	33.333	0.00	0.00	0.00	2.32
186	194	9.699410	TTCTGGTTTTGTTATCAATCTCCATAT	57.301	29.630	0.00	0.00	32.45	1.78
187	195	9.699410	ATTCTGGTTTTGTTATCAATCTCCATA	57.301	29.630	0.00	0.00	32.45	2.74
226	234	7.004555	TGATAGTATTTCTCGGCCATTACAT	57.995	36.000	2.24	0.00	0.00	2.29
301	312	6.323739	TGTTCTACCCTTCAAAATTTCTTGCT	59.676	34.615	0.00	0.00	0.00	3.91
307	318	9.281371	GTAGTACTGTTCTACCCTTCAAAATTT	57.719	33.333	5.39	0.00	33.73	1.82
371	383	3.181454	ACCGATCCTTCCATATGTTGGTC	60.181	47.826	1.24	1.70	46.52	4.02
411	423	4.582240	GCTCTTAAATATTGGCTTGCCTCT	59.418	41.667	13.18	2.81	0.00	3.69
447	459	4.405116	TGAGCTTTGGAACTTTTTGCAT	57.595	36.364	0.00	0.00	32.39	3.96
450	462	8.592105	TCATTAATGAGCTTTGGAACTTTTTG	57.408	30.769	14.23	0.00	32.11	2.44
451	463	9.211485	CATCATTAATGAGCTTTGGAACTTTTT	57.789	29.630	21.97	0.00	40.64	1.94
526	543	9.408648	GAATCTTAAGGATTTCATTTACCTCCA	57.591	33.333	1.85	0.00	43.90	3.86
527	544	8.851145	GGAATCTTAAGGATTTCATTTACCTCC	58.149	37.037	1.85	0.00	43.90	4.30
528	545	9.634021	AGGAATCTTAAGGATTTCATTTACCTC	57.366	33.333	1.85	0.00	43.90	3.85
529	546	9.997172	AAGGAATCTTAAGGATTTCATTTACCT	57.003	29.630	1.85	0.00	43.90	3.08
562	579	2.772515	GCCCATAGGTCTTGGTCTAACT	59.227	50.000	0.00	0.00	34.57	2.24
680	697	5.747565	TCTTCAATAGTTGAACTTTGTGCG	58.252	37.500	1.97	2.75	44.21	5.34
721	739	5.767816	ACGAATTAACAAGCTCCAAAGTT	57.232	34.783	0.00	0.00	0.00	2.66
912	964	6.072673	CCAAGTTAGTGATGTAGTTTGGGAAC	60.073	42.308	0.00	0.00	35.97	3.62
930	982	3.806949	AGAATGTCTTGGGCCAAGTTA	57.193	42.857	37.83	28.99	41.66	2.24
931	983	2.683211	AGAATGTCTTGGGCCAAGTT	57.317	45.000	37.83	27.82	41.66	2.66
933	985	3.634397	TCTAGAATGTCTTGGGCCAAG	57.366	47.619	35.44	35.44	42.25	3.61
934	986	3.523157	TCATCTAGAATGTCTTGGGCCAA	59.477	43.478	19.68	19.68	0.00	4.52
957	1011	2.181426	TTTCCGTTGCACAAACTTCG	57.819	45.000	0.00	0.00	36.56	3.79
963	1017	1.537776	CCTGCATTTTCCGTTGCACAA	60.538	47.619	0.00	0.00	43.54	3.33
978	1032	3.213506	GCCACACACAATATATCCTGCA	58.786	45.455	0.00	0.00	0.00	4.41
991	1045	0.819259	ACTGACCACATGCCACACAC	60.819	55.000	0.00	0.00	0.00	3.82
1082	1136	0.032678	ATCAGATCCGATGCCGTGAC	59.967	55.000	0.00	0.00	0.00	3.67
1093	1149	4.866486	GGTTTTGCATTCAACATCAGATCC	59.134	41.667	0.00	0.00	30.75	3.36
1251	1307	2.484417	GCTGCTACTACAGTGCCATCAT	60.484	50.000	0.00	0.00	39.96	2.45
1270	1326	3.819564	TCATACCATTTACTGCTCGCT	57.180	42.857	0.00	0.00	0.00	4.93
1387	1443	2.266554	GACACAAGCTCCTGAGAATCG	58.733	52.381	0.00	0.00	38.61	3.34
1417	1473	7.508687	TGCTAGCTCTATGATGTTTTATGGAA	58.491	34.615	17.23	0.00	0.00	3.53
1422	1478	8.206867	ACAAGATGCTAGCTCTATGATGTTTTA	58.793	33.333	17.23	0.00	0.00	1.52
1530	1852	3.825143	ATTTGGCAACTTTGTGAGCTT	57.175	38.095	0.00	0.00	37.61	3.74
1556	1878	3.338249	CACACTCCGGATTTGATTCAGT	58.662	45.455	17.87	0.99	0.00	3.41
1598	1920	6.607600	TGTCTAGTACACAGAAGGATGCTATT	59.392	38.462	0.00	0.00	31.43	1.73
1640	1962	7.856145	AACAAGAGCTTCATCATTAACTAGG	57.144	36.000	0.00	0.00	0.00	3.02
1675	1997	9.186938	CGAATTTTCATAACGAAATTGCATTTC	57.813	29.630	10.01	10.01	43.12	2.17
1681	2003	7.009083	TGGATGCGAATTTTCATAACGAAATTG	59.991	33.333	0.00	0.00	43.12	2.32
1688	2010	7.639039	TCTACATGGATGCGAATTTTCATAAC	58.361	34.615	0.00	0.00	0.00	1.89
1763	2085	8.458843	CCGGATGAAGAGTACAATTGTAAAAAT	58.541	33.333	19.63	7.31	31.52	1.82
1780	2103	1.069823	CTCCAGTGATCCCGGATGAAG	59.930	57.143	4.08	0.00	0.00	3.02
1785	2108	1.758514	GAGCTCCAGTGATCCCGGA	60.759	63.158	0.73	0.00	0.00	5.14
1786	2109	2.818132	GAGCTCCAGTGATCCCGG	59.182	66.667	0.87	0.00	0.00	5.73
1787	2110	2.415010	CGAGCTCCAGTGATCCCG	59.585	66.667	8.47	0.00	0.00	5.14
1789	2112	1.118356	ATCCCGAGCTCCAGTGATCC	61.118	60.000	8.47	0.00	0.00	3.36
1790	2113	0.316841	GATCCCGAGCTCCAGTGATC	59.683	60.000	8.47	10.34	0.00	2.92
1806	2129	7.576750	TTACGACAAAAGTACTCATGTGATC	57.423	36.000	15.85	4.03	0.00	2.92
1823	2146	4.944317	TGCACCCAATTTCATATTACGACA	59.056	37.500	0.00	0.00	0.00	4.35
1826	2149	5.830912	ACATGCACCCAATTTCATATTACG	58.169	37.500	0.00	0.00	0.00	3.18
1907	6106	5.559035	GCCATCTCATGCAGTAATTACGAAC	60.559	44.000	9.91	4.58	0.00	3.95
1915	6114	0.541392	ACGGCCATCTCATGCAGTAA	59.459	50.000	2.24	0.00	34.13	2.24
1984	6184	4.514585	AAGTGCAACACGGGCCCA	62.515	61.111	24.92	0.00	41.43	5.36
1988	6188	0.172352	ACAACAAAGTGCAACACGGG	59.828	50.000	0.00	0.00	41.43	5.28
1991	6191	2.671596	ACACACAACAAAGTGCAACAC	58.328	42.857	0.00	0.00	43.23	3.32
1992	6192	4.082517	ACATACACACAACAAAGTGCAACA	60.083	37.500	0.00	0.00	43.23	3.33
1993	6193	4.265085	CACATACACACAACAAAGTGCAAC	59.735	41.667	0.00	0.00	43.23	4.17
2029	6231	9.965902	AAAGGATTTAAGAGTCAGTCATATTGT	57.034	29.630	0.00	0.00	35.86	2.71
2142	6348	2.159099	TGGGTGAGTCTATGCAATCGAC	60.159	50.000	0.00	0.00	39.14	4.20
2154	6360	4.945246	ACATACGTTCATATGGGTGAGTC	58.055	43.478	2.13	0.00	36.95	3.36
2167	6373	5.922544	GGGTATGGTGTATGTACATACGTTC	59.077	44.000	31.04	24.37	44.80	3.95
2172	6378	9.524496	CTAGTAAGGGTATGGTGTATGTACATA	57.476	37.037	11.62	11.62	38.63	2.29
2174	6380	6.779049	CCTAGTAAGGGTATGGTGTATGTACA	59.221	42.308	0.00	0.00	39.48	2.90
2176	6382	7.074109	TCTCCTAGTAAGGGTATGGTGTATGTA	59.926	40.741	0.00	0.00	43.84	2.29
2179	6385	6.541264	TCTCCTAGTAAGGGTATGGTGTAT	57.459	41.667	0.00	0.00	43.84	2.29
2191	6397	2.224066	CCACGGGCATTCTCCTAGTAAG	60.224	54.545	0.00	0.00	0.00	2.34
2192	6398	1.760613	CCACGGGCATTCTCCTAGTAA	59.239	52.381	0.00	0.00	0.00	2.24
2199	6405	0.394352	ATCAACCCACGGGCATTCTC	60.394	55.000	0.69	0.00	39.32	2.87
2427	6677	0.603065	GCCGGCCTGAAAACTTGATT	59.397	50.000	18.11	0.00	0.00	2.57
2460	6710	6.889301	ATGCCGATTGATAAAGTCATTGAT	57.111	33.333	0.00	0.00	36.54	2.57
2472	6722	4.191033	TGCTTTGAAAATGCCGATTGAT	57.809	36.364	0.00	0.00	45.43	2.57
2478	6728	3.513662	TGATGATGCTTTGAAAATGCCG	58.486	40.909	0.00	0.00	45.43	5.69
2596	6846	6.926272	GGTCACCTGCTTATATCTAGAAACTG	59.074	42.308	0.00	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.