Multiple sequence alignment - TraesCS7A01G435900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G435900 chr7A 100.000 5479 0 0 1 5479 630031789 630037267 0.000000e+00 10118.0
1 TraesCS7A01G435900 chr7A 86.720 753 96 1 3861 4609 631961076 631960324 0.000000e+00 833.0
2 TraesCS7A01G435900 chr7A 85.167 809 98 11 3861 4650 632588089 632587284 0.000000e+00 809.0
3 TraesCS7A01G435900 chr7A 86.230 748 99 2 3861 4604 630390139 630390886 0.000000e+00 808.0
4 TraesCS7A01G435900 chr7A 85.185 810 92 10 3861 4652 632908611 632907812 0.000000e+00 806.0
5 TraesCS7A01G435900 chr7A 85.185 810 92 11 3861 4652 633037605 633036806 0.000000e+00 806.0
6 TraesCS7A01G435900 chr7A 84.249 819 92 11 3861 4652 632971164 632970356 0.000000e+00 765.0
7 TraesCS7A01G435900 chr7A 85.361 526 63 7 2748 3265 632589238 632588719 2.910000e-147 532.0
8 TraesCS7A01G435900 chr7A 84.512 523 70 7 2748 3265 633038651 633038135 1.750000e-144 523.0
9 TraesCS7A01G435900 chr7A 86.560 439 52 4 2748 3184 631963435 631963002 1.380000e-130 477.0
10 TraesCS7A01G435900 chr7A 87.234 423 44 6 2748 3166 632909912 632909496 1.790000e-129 473.0
11 TraesCS7A01G435900 chr7A 87.719 399 42 3 2752 3147 632972361 632971967 5.000000e-125 459.0
12 TraesCS7A01G435900 chr7A 88.288 333 33 3 948 1274 632590898 632590566 1.430000e-105 394.0
13 TraesCS7A01G435900 chr7A 86.804 341 36 4 943 1274 632974019 632973679 6.700000e-99 372.0
14 TraesCS7A01G435900 chr7A 86.510 341 37 4 943 1274 632911567 632911227 3.120000e-97 366.0
15 TraesCS7A01G435900 chr7A 87.255 306 33 2 943 1242 633040306 633040001 1.460000e-90 344.0
16 TraesCS7A01G435900 chr7A 83.616 354 37 16 3504 3850 632588627 632588288 4.120000e-81 313.0
17 TraesCS7A01G435900 chr7A 81.793 368 50 12 1594 1950 632910915 632910554 5.370000e-75 292.0
18 TraesCS7A01G435900 chr7A 81.793 368 50 12 1594 1950 632973367 632973006 5.370000e-75 292.0
19 TraesCS7A01G435900 chr7A 81.793 368 50 12 1594 1950 633039654 633039293 5.370000e-75 292.0
20 TraesCS7A01G435900 chr7A 80.429 373 50 17 1594 1951 632590254 632589890 4.210000e-66 263.0
21 TraesCS7A01G435900 chr7A 82.007 289 38 8 1594 1869 630388007 630388294 3.300000e-57 233.0
22 TraesCS7A01G435900 chr7A 82.239 259 38 5 3441 3695 631961618 631961364 3.320000e-52 217.0
23 TraesCS7A01G435900 chr7A 87.151 179 19 3 3504 3679 630389745 630389922 3.350000e-47 200.0
24 TraesCS7A01G435900 chr7A 85.870 184 23 2 2357 2540 631966470 631966650 5.600000e-45 193.0
25 TraesCS7A01G435900 chr7A 85.795 176 19 6 1305 1476 632590512 632590339 1.210000e-41 182.0
26 TraesCS7A01G435900 chr7A 85.795 176 19 5 1305 1476 632911173 632911000 1.210000e-41 182.0
27 TraesCS7A01G435900 chr7A 85.795 176 19 5 1305 1476 633039912 633039739 1.210000e-41 182.0
28 TraesCS7A01G435900 chr7A 97.143 35 1 0 1275 1309 632590585 632590551 5.930000e-05 60.2
29 TraesCS7A01G435900 chr7A 97.143 35 1 0 1275 1309 632911246 632911212 5.930000e-05 60.2
30 TraesCS7A01G435900 chr7A 92.500 40 3 0 4762 4801 631960235 631960196 2.130000e-04 58.4
31 TraesCS7A01G435900 chr7D 95.432 2255 42 11 2726 4933 546753220 546755460 0.000000e+00 3537.0
32 TraesCS7A01G435900 chr7D 95.630 1579 27 7 976 2547 546751692 546753235 0.000000e+00 2495.0
33 TraesCS7A01G435900 chr7D 93.141 554 35 3 1 554 546750432 546750982 0.000000e+00 809.0
34 TraesCS7A01G435900 chr7D 81.689 912 158 9 3655 4563 548137982 548138887 0.000000e+00 750.0
35 TraesCS7A01G435900 chr7D 87.832 452 51 3 2726 3177 548137195 548137642 1.350000e-145 527.0
36 TraesCS7A01G435900 chr7D 84.211 532 65 5 2748 3265 548132480 548131954 2.950000e-137 499.0
37 TraesCS7A01G435900 chr7D 84.225 355 37 14 3504 3852 548805564 548805223 1.470000e-85 327.0
38 TraesCS7A01G435900 chr7D 88.321 274 25 4 4379 4647 548129991 548129720 6.850000e-84 322.0
39 TraesCS7A01G435900 chr7D 84.257 343 38 8 948 1274 548807694 548807352 2.460000e-83 320.0
40 TraesCS7A01G435900 chr7D 86.592 179 20 3 3504 3679 548131861 548131684 1.560000e-45 195.0
41 TraesCS7A01G435900 chr7D 85.106 188 20 5 2357 2540 548137020 548137203 9.370000e-43 185.0
42 TraesCS7A01G435900 chr7D 80.749 187 21 9 1305 1476 548807291 548807105 1.240000e-26 132.0
43 TraesCS7A01G435900 chr7D 100.000 35 0 0 1275 1309 548807371 548807337 1.270000e-06 65.8
44 TraesCS7A01G435900 chr7D 100.000 29 0 0 4773 4801 548129633 548129605 3.000000e-03 54.7
45 TraesCS7A01G435900 chr7B 85.360 806 99 11 3861 4650 592361817 592361015 0.000000e+00 817.0
46 TraesCS7A01G435900 chr7B 84.981 526 66 5 2748 3265 592362862 592362342 6.290000e-144 521.0
47 TraesCS7A01G435900 chr7B 83.929 448 67 2 2729 3176 591575213 591574771 1.820000e-114 424.0
48 TraesCS7A01G435900 chr7B 84.225 355 37 14 3504 3852 592362250 592361909 1.470000e-85 327.0
49 TraesCS7A01G435900 chr7B 96.809 188 4 2 2537 2722 163011692 163011505 4.120000e-81 313.0
50 TraesCS7A01G435900 chr7B 81.892 370 48 14 948 1309 592364549 592364191 1.490000e-75 294.0
51 TraesCS7A01G435900 chr7B 81.096 365 49 15 1594 1945 592363878 592363521 1.940000e-69 274.0
52 TraesCS7A01G435900 chr6D 83.933 778 109 9 117 887 403034224 403034992 0.000000e+00 730.0
53 TraesCS7A01G435900 chr6D 85.556 450 49 8 443 887 316261079 316260641 1.800000e-124 457.0
54 TraesCS7A01G435900 chr6D 90.333 300 25 3 117 412 316261374 316261075 1.850000e-104 390.0
55 TraesCS7A01G435900 chr6D 90.164 61 6 0 3350 3410 79678006 79678066 4.550000e-11 80.5
56 TraesCS7A01G435900 chr2A 83.459 798 98 18 117 903 764772597 764773371 0.000000e+00 712.0
57 TraesCS7A01G435900 chr2A 90.210 143 12 1 3268 3410 632921516 632921656 9.370000e-43 185.0
58 TraesCS7A01G435900 chr5D 83.439 785 102 18 116 887 294126892 294126123 0.000000e+00 704.0
59 TraesCS7A01G435900 chr5D 85.622 466 50 6 119 579 345085841 345085388 1.790000e-129 473.0
60 TraesCS7A01G435900 chr5D 83.929 224 28 7 669 887 345085377 345085157 2.000000e-49 207.0
61 TraesCS7A01G435900 chr5D 84.848 99 10 4 3316 3414 58036262 58036169 1.620000e-15 95.3
62 TraesCS7A01G435900 chr5D 89.286 56 6 0 4923 4978 431882543 431882488 2.740000e-08 71.3
63 TraesCS7A01G435900 chr4D 89.223 566 42 10 4931 5479 471712286 471711723 0.000000e+00 689.0
64 TraesCS7A01G435900 chr4D 96.970 165 5 0 2557 2721 341523807 341523971 1.500000e-70 278.0
65 TraesCS7A01G435900 chr6B 83.206 786 96 20 117 887 505330621 505329857 0.000000e+00 688.0
66 TraesCS7A01G435900 chr6B 86.701 391 41 7 117 498 694429324 694428936 1.820000e-114 424.0
67 TraesCS7A01G435900 chr6B 99.438 178 0 1 2550 2726 159369757 159369580 6.850000e-84 322.0
68 TraesCS7A01G435900 chr6B 100.000 173 0 0 2552 2724 358303201 358303029 2.460000e-83 320.0
69 TraesCS7A01G435900 chr6B 92.655 177 11 2 2567 2742 665712861 665713036 2.530000e-63 254.0
70 TraesCS7A01G435900 chr6B 82.979 141 22 1 3268 3408 46851281 46851143 5.760000e-25 126.0
71 TraesCS7A01G435900 chr2D 83.185 785 97 19 120 887 646116976 646116210 0.000000e+00 686.0
72 TraesCS7A01G435900 chr2D 91.121 214 18 1 5267 5479 267285628 267285841 6.940000e-74 289.0
73 TraesCS7A01G435900 chr2D 96.774 31 1 0 4923 4953 626419870 626419840 1.000000e-02 52.8
74 TraesCS7A01G435900 chr1D 88.967 571 41 11 4929 5479 251293885 251294453 0.000000e+00 686.0
75 TraesCS7A01G435900 chr1D 80.986 142 25 2 3271 3412 328097457 328097596 1.610000e-20 111.0
76 TraesCS7A01G435900 chr5B 82.759 783 99 21 117 887 159707282 159706524 0.000000e+00 665.0
77 TraesCS7A01G435900 chr5B 82.500 520 60 15 4987 5479 632360439 632359924 1.410000e-115 427.0
78 TraesCS7A01G435900 chr5B 85.135 370 47 7 156 520 86297750 86298116 6.700000e-99 372.0
79 TraesCS7A01G435900 chr5B 97.312 186 3 1 2537 2722 209646202 209646385 1.150000e-81 315.0
80 TraesCS7A01G435900 chr1B 82.675 785 100 23 116 887 527845097 527844336 0.000000e+00 664.0
81 TraesCS7A01G435900 chr1B 99.432 176 0 1 2552 2727 246770705 246770879 8.860000e-83 318.0
82 TraesCS7A01G435900 chr1B 95.050 202 7 3 2554 2754 47635734 47635535 1.150000e-81 315.0
83 TraesCS7A01G435900 chr1B 97.802 182 4 0 2541 2722 530961231 530961412 1.150000e-81 315.0
84 TraesCS7A01G435900 chr1B 80.822 438 50 15 4986 5407 40393449 40393868 4.120000e-81 313.0
85 TraesCS7A01G435900 chr1B 76.774 155 27 8 4927 5078 50118785 50118933 1.640000e-10 78.7
86 TraesCS7A01G435900 chr3B 86.184 608 64 12 305 903 564908261 564908857 1.660000e-179 640.0
87 TraesCS7A01G435900 chr3B 89.362 47 4 1 4918 4963 328597355 328597401 2.130000e-04 58.4
88 TraesCS7A01G435900 chr1A 86.047 559 55 11 4941 5479 529387891 529388446 3.680000e-161 579.0
89 TraesCS7A01G435900 chr1A 100.000 173 0 0 2550 2722 137409901 137410073 2.460000e-83 320.0
90 TraesCS7A01G435900 chr1A 79.231 130 20 5 725 849 480753159 480753286 3.520000e-12 84.2
91 TraesCS7A01G435900 chr1A 89.362 47 4 1 4918 4963 19753207 19753161 2.130000e-04 58.4
92 TraesCS7A01G435900 chr3A 80.332 783 118 25 112 887 668688023 668687270 1.330000e-155 560.0
93 TraesCS7A01G435900 chr3A 79.846 779 120 23 117 887 610503852 610504601 8.080000e-148 534.0
94 TraesCS7A01G435900 chr3A 82.906 117 17 3 4912 5027 51699987 51700101 9.710000e-18 102.0
95 TraesCS7A01G435900 chr4A 99.432 176 0 1 2547 2722 479322991 479322817 8.860000e-83 318.0
96 TraesCS7A01G435900 chr4A 84.459 148 21 1 3268 3415 612051313 612051458 1.590000e-30 145.0
97 TraesCS7A01G435900 chr4A 78.862 123 23 3 4923 5044 198008326 198008206 4.550000e-11 80.5
98 TraesCS7A01G435900 chr4B 97.590 166 3 1 2557 2721 423359921 423360086 3.230000e-72 283.0
99 TraesCS7A01G435900 chrUn 90.909 44 4 0 5424 5467 89158425 89158468 5.930000e-05 60.2
100 TraesCS7A01G435900 chrUn 92.683 41 3 0 5427 5467 89358928 89358888 5.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G435900 chr7A 630031789 630037267 5478 False 10118.000000 10118 100.000000 1 5479 1 chr7A.!!$F1 5478
1 TraesCS7A01G435900 chr7A 632970356 632974019 3663 True 472.000000 765 85.141250 943 4652 4 chr7A.!!$R4 3709
2 TraesCS7A01G435900 chr7A 633036806 633040306 3500 True 429.400000 806 84.908000 943 4652 5 chr7A.!!$R5 3709
3 TraesCS7A01G435900 chr7A 630388007 630390886 2879 False 413.666667 808 85.129333 1594 4604 3 chr7A.!!$F3 3010
4 TraesCS7A01G435900 chr7A 631960196 631963435 3239 True 396.350000 833 87.004750 2748 4801 4 chr7A.!!$R1 2053
5 TraesCS7A01G435900 chr7A 632587284 632590898 3614 True 364.742857 809 86.542714 948 4650 7 chr7A.!!$R2 3702
6 TraesCS7A01G435900 chr7A 632907812 632911567 3755 True 363.200000 806 87.276667 943 4652 6 chr7A.!!$R3 3709
7 TraesCS7A01G435900 chr7D 546750432 546755460 5028 False 2280.333333 3537 94.734333 1 4933 3 chr7D.!!$F1 4932
8 TraesCS7A01G435900 chr7D 548137020 548138887 1867 False 487.333333 750 84.875667 2357 4563 3 chr7D.!!$F2 2206
9 TraesCS7A01G435900 chr7D 548129605 548132480 2875 True 267.675000 499 89.781000 2748 4801 4 chr7D.!!$R1 2053
10 TraesCS7A01G435900 chr7D 548805223 548807694 2471 True 211.200000 327 87.307750 948 3852 4 chr7D.!!$R2 2904
11 TraesCS7A01G435900 chr7B 592361015 592364549 3534 True 446.600000 817 83.510800 948 4650 5 chr7B.!!$R3 3702
12 TraesCS7A01G435900 chr6D 403034224 403034992 768 False 730.000000 730 83.933000 117 887 1 chr6D.!!$F2 770
13 TraesCS7A01G435900 chr6D 316260641 316261374 733 True 423.500000 457 87.944500 117 887 2 chr6D.!!$R1 770
14 TraesCS7A01G435900 chr2A 764772597 764773371 774 False 712.000000 712 83.459000 117 903 1 chr2A.!!$F2 786
15 TraesCS7A01G435900 chr5D 294126123 294126892 769 True 704.000000 704 83.439000 116 887 1 chr5D.!!$R2 771
16 TraesCS7A01G435900 chr5D 345085157 345085841 684 True 340.000000 473 84.775500 119 887 2 chr5D.!!$R4 768
17 TraesCS7A01G435900 chr4D 471711723 471712286 563 True 689.000000 689 89.223000 4931 5479 1 chr4D.!!$R1 548
18 TraesCS7A01G435900 chr6B 505329857 505330621 764 True 688.000000 688 83.206000 117 887 1 chr6B.!!$R4 770
19 TraesCS7A01G435900 chr2D 646116210 646116976 766 True 686.000000 686 83.185000 120 887 1 chr2D.!!$R2 767
20 TraesCS7A01G435900 chr1D 251293885 251294453 568 False 686.000000 686 88.967000 4929 5479 1 chr1D.!!$F1 550
21 TraesCS7A01G435900 chr5B 159706524 159707282 758 True 665.000000 665 82.759000 117 887 1 chr5B.!!$R1 770
22 TraesCS7A01G435900 chr5B 632359924 632360439 515 True 427.000000 427 82.500000 4987 5479 1 chr5B.!!$R2 492
23 TraesCS7A01G435900 chr1B 527844336 527845097 761 True 664.000000 664 82.675000 116 887 1 chr1B.!!$R2 771
24 TraesCS7A01G435900 chr3B 564908261 564908857 596 False 640.000000 640 86.184000 305 903 1 chr3B.!!$F2 598
25 TraesCS7A01G435900 chr1A 529387891 529388446 555 False 579.000000 579 86.047000 4941 5479 1 chr1A.!!$F3 538
26 TraesCS7A01G435900 chr3A 668687270 668688023 753 True 560.000000 560 80.332000 112 887 1 chr3A.!!$R1 775
27 TraesCS7A01G435900 chr3A 610503852 610504601 749 False 534.000000 534 79.846000 117 887 1 chr3A.!!$F2 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 862 0.167251 GGTTTATGTGTTCGCGGGTG 59.833 55.0 6.13 0.0 0.00 4.61 F
2655 3283 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 F
2726 3354 0.259938 CCAGGCCTGCCCTCTTAAAT 59.740 55.0 28.39 0.0 44.09 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2681 3309 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.0 0.0 34.10 3.16 R
4055 7824 0.415830 TCCATACTCCCCACAGGTCA 59.584 55.0 0.0 0.0 36.75 4.02 R
4655 8455 0.389948 CGCACCCTTACAGTCCAGAC 60.390 60.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.343142 TGACGGCTGTGTGTGTAGATT 59.657 47.619 0.80 0.00 0.00 2.40
29 30 1.726791 CGGCTGTGTGTGTAGATTGAC 59.273 52.381 0.00 0.00 0.00 3.18
41 42 0.693049 AGATTGACCGACTTTGGGCT 59.307 50.000 0.00 0.00 38.15 5.19
43 44 0.400213 ATTGACCGACTTTGGGCTGA 59.600 50.000 0.00 0.00 38.15 4.26
61 62 3.833442 CTGACCAACCGAAAAATTAGGC 58.167 45.455 0.00 0.00 0.00 3.93
251 252 1.039233 CCATACCCGTACCCGACTGT 61.039 60.000 0.00 0.00 35.63 3.55
332 333 7.920151 TGTTCAAAGTTGACTAAACAATCATGG 59.080 33.333 0.00 0.00 41.61 3.66
381 386 7.768582 TCATACACATTCGTCAATAGACCAATT 59.231 33.333 0.00 0.00 41.87 2.32
520 559 1.711375 TCCTGATAGGAGTAGCCGGAT 59.289 52.381 5.05 0.00 40.06 4.18
580 676 1.014352 GTAATCGTCATGGCACCCAC 58.986 55.000 0.00 0.00 35.80 4.61
635 732 3.152341 AGGAGGCAGACAAGAACAAATG 58.848 45.455 0.00 0.00 0.00 2.32
654 751 7.916552 ACAAATGTACTTGACAAGTTGTACTC 58.083 34.615 25.10 10.14 43.39 2.59
750 856 6.738352 GTAGTATACGGGTTTATGTGTTCG 57.262 41.667 0.00 0.00 0.00 3.95
756 862 0.167251 GGTTTATGTGTTCGCGGGTG 59.833 55.000 6.13 0.00 0.00 4.61
760 866 1.817911 TATGTGTTCGCGGGTGTGGA 61.818 55.000 6.13 0.00 0.00 4.02
771 877 1.308998 GGGTGTGGATATTGCCTTCG 58.691 55.000 0.00 0.00 0.00 3.79
775 881 0.304705 GTGGATATTGCCTTCGCGTG 59.695 55.000 5.77 0.00 38.08 5.34
788 894 2.586914 GCGTGCCCGTACCCATAC 60.587 66.667 0.00 0.00 36.15 2.39
789 895 2.107546 CGTGCCCGTACCCATACC 59.892 66.667 0.00 0.00 0.00 2.73
790 896 2.507452 GTGCCCGTACCCATACCC 59.493 66.667 0.00 0.00 0.00 3.69
791 897 3.155861 TGCCCGTACCCATACCCG 61.156 66.667 0.00 0.00 0.00 5.28
792 898 3.156556 GCCCGTACCCATACCCGT 61.157 66.667 0.00 0.00 0.00 5.28
793 899 1.832167 GCCCGTACCCATACCCGTA 60.832 63.158 0.00 0.00 0.00 4.02
794 900 2.041153 CCCGTACCCATACCCGTAC 58.959 63.158 0.00 0.00 33.08 3.67
795 901 1.463553 CCCGTACCCATACCCGTACC 61.464 65.000 0.00 0.00 32.85 3.34
796 902 1.463553 CCGTACCCATACCCGTACCC 61.464 65.000 0.00 0.00 32.85 3.69
810 920 1.065851 CGTACCCGGCACAAACTTTTT 59.934 47.619 0.00 0.00 0.00 1.94
821 931 7.912773 CCGGCACAAACTTTTTCATTTAAAAAT 59.087 29.630 0.00 0.00 44.10 1.82
870 1012 6.449041 ACCCAGATCCTAATAAGGTTTTACCA 59.551 38.462 0.00 0.00 44.09 3.25
921 1071 6.155827 TGTTGATTCCATTCCAATCGTTTTC 58.844 36.000 0.00 0.00 33.57 2.29
924 1074 2.452505 TCCATTCCAATCGTTTTCCCC 58.547 47.619 0.00 0.00 0.00 4.81
925 1075 1.480545 CCATTCCAATCGTTTTCCCCC 59.519 52.381 0.00 0.00 0.00 5.40
959 1109 2.026822 GCACTTCTTCTCCCCATTCTCA 60.027 50.000 0.00 0.00 0.00 3.27
1058 1428 3.039202 GCGTCGCCACCTTTCATGG 62.039 63.158 5.75 0.00 40.50 3.66
1192 1565 1.935873 CCGATCTACTTGTCCGTCGTA 59.064 52.381 0.00 0.00 0.00 3.43
1254 1641 5.522824 GCGCCTTTAGTTAGTTGCTATAGTT 59.477 40.000 0.00 0.00 0.00 2.24
1255 1642 6.036844 GCGCCTTTAGTTAGTTGCTATAGTTT 59.963 38.462 0.00 0.00 0.00 2.66
1256 1643 7.413767 GCGCCTTTAGTTAGTTGCTATAGTTTT 60.414 37.037 0.00 0.00 0.00 2.43
1257 1644 7.903431 CGCCTTTAGTTAGTTGCTATAGTTTTG 59.097 37.037 0.84 0.00 0.00 2.44
1258 1645 8.182227 GCCTTTAGTTAGTTGCTATAGTTTTGG 58.818 37.037 0.84 0.00 0.00 3.28
1259 1646 9.444600 CCTTTAGTTAGTTGCTATAGTTTTGGA 57.555 33.333 0.84 0.00 0.00 3.53
1263 1650 8.723942 AGTTAGTTGCTATAGTTTTGGATCTG 57.276 34.615 0.84 0.00 0.00 2.90
1264 1651 7.770897 AGTTAGTTGCTATAGTTTTGGATCTGG 59.229 37.037 0.84 0.00 0.00 3.86
1265 1652 6.313519 AGTTGCTATAGTTTTGGATCTGGA 57.686 37.500 0.84 0.00 0.00 3.86
1266 1653 6.904626 AGTTGCTATAGTTTTGGATCTGGAT 58.095 36.000 0.84 0.00 0.00 3.41
1267 1654 7.349598 AGTTGCTATAGTTTTGGATCTGGATT 58.650 34.615 0.84 0.00 0.00 3.01
1268 1655 7.500559 AGTTGCTATAGTTTTGGATCTGGATTC 59.499 37.037 0.84 0.00 0.00 2.52
1269 1656 7.141758 TGCTATAGTTTTGGATCTGGATTCT 57.858 36.000 0.84 0.00 0.00 2.40
1270 1657 6.994496 TGCTATAGTTTTGGATCTGGATTCTG 59.006 38.462 0.84 0.00 0.00 3.02
1271 1658 7.147497 TGCTATAGTTTTGGATCTGGATTCTGA 60.147 37.037 0.84 0.00 0.00 3.27
1272 1659 7.172361 GCTATAGTTTTGGATCTGGATTCTGAC 59.828 40.741 0.84 0.00 0.00 3.51
1273 1660 4.593956 AGTTTTGGATCTGGATTCTGACC 58.406 43.478 0.00 0.00 0.00 4.02
1350 1790 3.837399 TTGGTAAAATAAGGCAGGGGT 57.163 42.857 0.00 0.00 0.00 4.95
1351 1791 3.094484 TGGTAAAATAAGGCAGGGGTG 57.906 47.619 0.00 0.00 0.00 4.61
1460 1915 5.726308 TCTCTTTGGTGATAGATTTCCTCCA 59.274 40.000 0.00 0.00 0.00 3.86
1527 1982 1.627329 TGCTCATCTCTTCTGCCAACT 59.373 47.619 0.00 0.00 0.00 3.16
1532 1987 5.742546 GCTCATCTCTTCTGCCAACTATCAT 60.743 44.000 0.00 0.00 0.00 2.45
1653 2174 2.009051 CATTGATAGCAAGCGGTGACA 58.991 47.619 0.00 0.00 37.45 3.58
1934 2470 5.719085 TGCATTCTGGGGTTACATTTGTTAT 59.281 36.000 0.00 0.00 0.00 1.89
2026 2633 7.722285 TGCCCTACCCTATAAAAATATGTTCAC 59.278 37.037 0.00 0.00 0.00 3.18
2337 2958 6.282199 ACCTTTACTTACTGACGTGATGAT 57.718 37.500 0.00 0.00 0.00 2.45
2338 2959 7.400599 ACCTTTACTTACTGACGTGATGATA 57.599 36.000 0.00 0.00 0.00 2.15
2339 2960 8.008513 ACCTTTACTTACTGACGTGATGATAT 57.991 34.615 0.00 0.00 0.00 1.63
2340 2961 7.921214 ACCTTTACTTACTGACGTGATGATATG 59.079 37.037 0.00 0.00 0.00 1.78
2341 2962 7.921214 CCTTTACTTACTGACGTGATGATATGT 59.079 37.037 0.00 0.00 0.00 2.29
2342 2963 9.302345 CTTTACTTACTGACGTGATGATATGTT 57.698 33.333 0.00 0.00 0.00 2.71
2344 2965 9.726232 TTACTTACTGACGTGATGATATGTTAC 57.274 33.333 0.00 0.00 0.00 2.50
2345 2966 7.201145 ACTTACTGACGTGATGATATGTTACC 58.799 38.462 0.00 0.00 0.00 2.85
2346 2967 4.945246 ACTGACGTGATGATATGTTACCC 58.055 43.478 0.00 0.00 0.00 3.69
2347 2968 3.972403 TGACGTGATGATATGTTACCCG 58.028 45.455 0.00 0.00 0.00 5.28
2348 2969 2.729882 GACGTGATGATATGTTACCCGC 59.270 50.000 0.00 0.00 0.00 6.13
2349 2970 2.364324 ACGTGATGATATGTTACCCGCT 59.636 45.455 0.00 0.00 0.00 5.52
2350 2971 3.181469 ACGTGATGATATGTTACCCGCTT 60.181 43.478 0.00 0.00 0.00 4.68
2351 2972 4.038282 ACGTGATGATATGTTACCCGCTTA 59.962 41.667 0.00 0.00 0.00 3.09
2352 2973 5.168569 CGTGATGATATGTTACCCGCTTAT 58.831 41.667 0.00 0.00 0.00 1.73
2571 3199 1.692411 AAAAAGGACAGACCCAGTGC 58.308 50.000 0.00 0.00 40.05 4.40
2572 3200 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
2573 3201 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
2574 3202 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
2575 3203 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
2576 3204 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
2577 3205 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
2578 3206 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
2579 3207 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
2580 3208 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
2581 3209 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
2582 3210 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
2583 3211 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
2584 3212 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2585 3213 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2586 3214 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2587 3215 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2588 3216 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2589 3217 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2590 3218 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2591 3219 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2592 3220 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2600 3228 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
2601 3229 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
2602 3230 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
2603 3231 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
2604 3232 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
2605 3233 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
2606 3234 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
2608 3236 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
2609 3237 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
2610 3238 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
2611 3239 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
2612 3240 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
2613 3241 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
2614 3242 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
2615 3243 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
2616 3244 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
2617 3245 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
2618 3246 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
2619 3247 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
2620 3248 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
2621 3249 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
2622 3250 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
2623 3251 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
2624 3252 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
2625 3253 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
2626 3254 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
2627 3255 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
2628 3256 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
2629 3257 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
2630 3258 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
2631 3259 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
2632 3260 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
2633 3261 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
2634 3262 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
2635 3263 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
2636 3264 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
2637 3265 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
2638 3266 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
2639 3267 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
2640 3268 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
2641 3269 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
2652 3280 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
2653 3281 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
2654 3282 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
2655 3283 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
2657 3285 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
2658 3286 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
2659 3287 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
2660 3288 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2661 3289 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
2662 3290 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
2663 3291 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2664 3292 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
2673 3301 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2674 3302 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2675 3303 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2676 3304 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2677 3305 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2678 3306 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2679 3307 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2680 3308 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
2681 3309 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
2682 3310 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
2693 3321 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
2694 3322 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
2695 3323 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
2696 3324 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
2697 3325 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
2698 3326 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
2699 3327 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
2705 3333 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
2706 3334 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
2707 3335 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
2708 3336 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
2709 3337 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
2710 3338 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
2711 3339 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
2723 3351 3.411517 GCCAGGCCTGCCCTCTTA 61.412 66.667 28.39 0.00 44.09 2.10
2724 3352 2.983879 GCCAGGCCTGCCCTCTTAA 61.984 63.158 28.39 0.00 44.09 1.85
2725 3353 1.691219 CCAGGCCTGCCCTCTTAAA 59.309 57.895 28.39 0.00 44.09 1.52
2726 3354 0.259938 CCAGGCCTGCCCTCTTAAAT 59.740 55.000 28.39 0.00 44.09 1.40
2727 3355 1.685148 CAGGCCTGCCCTCTTAAATC 58.315 55.000 22.33 0.00 44.09 2.17
2728 3356 1.213926 CAGGCCTGCCCTCTTAAATCT 59.786 52.381 22.33 0.00 44.09 2.40
2729 3357 1.492599 AGGCCTGCCCTCTTAAATCTC 59.507 52.381 3.11 0.00 41.21 2.75
2730 3358 1.477740 GGCCTGCCCTCTTAAATCTCC 60.478 57.143 0.00 0.00 0.00 3.71
2731 3359 1.212935 GCCTGCCCTCTTAAATCTCCA 59.787 52.381 0.00 0.00 0.00 3.86
2732 3360 2.158549 GCCTGCCCTCTTAAATCTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
2733 3361 3.689569 GCCTGCCCTCTTAAATCTCCATT 60.690 47.826 0.00 0.00 0.00 3.16
2734 3362 4.446311 GCCTGCCCTCTTAAATCTCCATTA 60.446 45.833 0.00 0.00 0.00 1.90
2735 3363 5.066593 CCTGCCCTCTTAAATCTCCATTAC 58.933 45.833 0.00 0.00 0.00 1.89
2736 3364 5.397899 CCTGCCCTCTTAAATCTCCATTACA 60.398 44.000 0.00 0.00 0.00 2.41
2737 3365 6.073447 TGCCCTCTTAAATCTCCATTACAA 57.927 37.500 0.00 0.00 0.00 2.41
2738 3366 6.672593 TGCCCTCTTAAATCTCCATTACAAT 58.327 36.000 0.00 0.00 0.00 2.71
3024 3691 6.347079 CCTGCAATTATTTCAAGCAACAAGTG 60.347 38.462 0.00 0.00 34.45 3.16
3266 5383 2.618241 TGCCTAGAACAACAAGCACTTG 59.382 45.455 8.82 8.82 45.58 3.16
3306 5423 1.837051 ACTCCGCAACTCCACTCCA 60.837 57.895 0.00 0.00 0.00 3.86
3335 5452 5.010933 TGGTGGAGTTACAGTTCAAAAACA 58.989 37.500 0.00 0.00 37.88 2.83
3649 5842 9.076596 GCATCACTACAAGTCATTTTATTTTCC 57.923 33.333 0.00 0.00 0.00 3.13
3653 5846 9.981114 CACTACAAGTCATTTTATTTTCCCTTT 57.019 29.630 0.00 0.00 0.00 3.11
3781 5980 5.401550 CAATCAGTTTGATACGTGGCAAAT 58.598 37.500 16.95 7.21 35.76 2.32
3809 6008 6.918892 TGGTCATCAATTGTAAACTATCGG 57.081 37.500 5.13 0.00 0.00 4.18
3835 6037 5.705609 AGTAAATGGTGTGGCAAGTAAAG 57.294 39.130 0.00 0.00 0.00 1.85
4055 7824 2.974794 TGATGGTGTATCAGGCATAGCT 59.025 45.455 0.00 0.00 40.82 3.32
4403 8181 1.148310 CGGACACACATGGACTTGAC 58.852 55.000 0.00 0.00 0.00 3.18
4410 8188 2.146342 CACATGGACTTGACACTCACC 58.854 52.381 0.00 0.00 0.00 4.02
4655 8455 2.479837 TGGCGTACACTGTTTCTTCTG 58.520 47.619 0.00 0.00 0.00 3.02
4726 8527 1.674817 CCGTATCCGCTTGGTGAACTT 60.675 52.381 0.00 0.00 0.00 2.66
4728 8529 2.423577 GTATCCGCTTGGTGAACTTGT 58.576 47.619 0.00 0.00 0.00 3.16
4731 8532 1.723608 CCGCTTGGTGAACTTGTGCA 61.724 55.000 0.00 0.00 0.00 4.57
4732 8533 0.311790 CGCTTGGTGAACTTGTGCAT 59.688 50.000 0.00 0.00 0.00 3.96
4733 8534 1.535028 CGCTTGGTGAACTTGTGCATA 59.465 47.619 0.00 0.00 0.00 3.14
4734 8535 2.031245 CGCTTGGTGAACTTGTGCATAA 60.031 45.455 0.00 0.00 0.00 1.90
4735 8536 3.366273 CGCTTGGTGAACTTGTGCATAAT 60.366 43.478 0.00 0.00 0.00 1.28
4736 8537 4.168760 GCTTGGTGAACTTGTGCATAATC 58.831 43.478 0.00 0.00 0.00 1.75
4737 8538 4.737054 CTTGGTGAACTTGTGCATAATCC 58.263 43.478 0.00 0.00 0.00 3.01
4738 8539 2.746904 TGGTGAACTTGTGCATAATCCG 59.253 45.455 0.00 0.00 0.00 4.18
4739 8540 2.747446 GGTGAACTTGTGCATAATCCGT 59.253 45.455 0.00 0.00 0.00 4.69
4740 8541 3.190535 GGTGAACTTGTGCATAATCCGTT 59.809 43.478 0.00 0.00 0.00 4.44
4741 8542 4.320935 GGTGAACTTGTGCATAATCCGTTT 60.321 41.667 0.00 0.00 0.00 3.60
4771 8572 2.664081 GGCCACTGCTGCCTAGTCT 61.664 63.158 0.00 0.00 45.70 3.24
4803 8604 5.455872 TCCTAGTCTGAATCCTAATCCGTT 58.544 41.667 0.00 0.00 0.00 4.44
4915 8717 7.491048 TGAAAAGGAATTTGTGTTTAGTGCTTC 59.509 33.333 0.00 0.00 0.00 3.86
4916 8718 6.715347 AAGGAATTTGTGTTTAGTGCTTCT 57.285 33.333 0.00 0.00 0.00 2.85
4920 8722 8.691797 AGGAATTTGTGTTTAGTGCTTCTTTTA 58.308 29.630 0.00 0.00 0.00 1.52
4921 8723 9.476202 GGAATTTGTGTTTAGTGCTTCTTTTAT 57.524 29.630 0.00 0.00 0.00 1.40
4979 8781 1.606668 GCTTTTGGTTGTCCGTCATCA 59.393 47.619 0.00 0.00 36.30 3.07
5056 8859 6.959671 TGTTTTAGTGGCACTTTGAAAAAG 57.040 33.333 27.24 0.00 0.00 2.27
5066 8869 4.857037 GCACTTTGAAAAAGACGTTTCACT 59.143 37.500 6.73 0.00 44.96 3.41
5179 8997 4.530857 CGATCCACACCTCCGCCC 62.531 72.222 0.00 0.00 0.00 6.13
5248 9066 1.758514 CTCGCCCCTCTGCCTTCTA 60.759 63.158 0.00 0.00 0.00 2.10
5291 9109 3.370104 TCACATCTCTCCCTCTTTCTCC 58.630 50.000 0.00 0.00 0.00 3.71
5309 9127 2.702093 CCTGAACAGGGACCTCCAT 58.298 57.895 12.54 0.00 44.87 3.41
5340 9158 2.273449 CTGCCGGCCCTCAATCTT 59.727 61.111 26.77 0.00 0.00 2.40
5371 9189 1.303236 CACCTCCACGCCAAATCCA 60.303 57.895 0.00 0.00 0.00 3.41
5378 9196 1.674322 ACGCCAAATCCACCGGAAG 60.674 57.895 9.46 0.00 34.34 3.46
5411 9240 2.835431 CAGATCCGACCGGCCTCT 60.835 66.667 0.00 5.66 34.68 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.726791 CAATCTACACACACAGCCGTC 59.273 52.381 0.00 0.00 0.00 4.79
26 27 1.070786 GTCAGCCCAAAGTCGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
29 30 2.429930 TGGTCAGCCCAAAGTCGG 59.570 61.111 0.00 0.00 41.50 4.79
41 42 2.559231 GGCCTAATTTTTCGGTTGGTCA 59.441 45.455 0.00 0.00 0.00 4.02
43 44 1.542472 CGGCCTAATTTTTCGGTTGGT 59.458 47.619 0.00 0.00 0.00 3.67
46 47 0.528924 GCCGGCCTAATTTTTCGGTT 59.471 50.000 18.11 0.00 42.35 4.44
50 51 1.585261 CGCGCCGGCCTAATTTTTC 60.585 57.895 23.46 0.00 35.02 2.29
72 73 4.135153 CTCAGTGCTAGGCGCCGT 62.135 66.667 23.20 12.38 40.23 5.68
92 93 0.663568 GGATCGAACCGACGCATAGG 60.664 60.000 0.00 0.00 39.18 2.57
94 95 0.671796 ATGGATCGAACCGACGCATA 59.328 50.000 7.27 0.00 39.18 3.14
103 104 3.242870 GCCATGTTGAGAATGGATCGAAC 60.243 47.826 6.63 0.00 46.44 3.95
352 357 6.923508 GGTCTATTGACGAATGTGTATGATGA 59.076 38.462 1.15 0.00 43.79 2.92
381 386 8.680039 TTCTATGATGCATGAATGTGTTGATA 57.320 30.769 2.46 0.00 0.00 2.15
424 461 3.643320 TGAATAATTTTGCACCCCACACA 59.357 39.130 0.00 0.00 0.00 3.72
454 491 1.446792 CGGAGCATGACAAGCGTCT 60.447 57.895 0.00 0.00 43.06 4.18
504 543 3.321111 TGAAACATCCGGCTACTCCTATC 59.679 47.826 0.00 0.00 0.00 2.08
611 707 0.318762 GTTCTTGTCTGCCTCCTCGT 59.681 55.000 0.00 0.00 0.00 4.18
635 732 4.148348 CGCTGAGTACAACTTGTCAAGTAC 59.852 45.833 18.45 12.91 41.91 2.73
654 751 3.314541 AACCTAAGTTACCAGACGCTG 57.685 47.619 0.52 0.52 33.27 5.18
743 849 1.817911 TATCCACACCCGCGAACACA 61.818 55.000 8.23 0.00 0.00 3.72
744 850 0.461339 ATATCCACACCCGCGAACAC 60.461 55.000 8.23 0.00 0.00 3.32
745 851 0.250793 AATATCCACACCCGCGAACA 59.749 50.000 8.23 0.00 0.00 3.18
746 852 0.655733 CAATATCCACACCCGCGAAC 59.344 55.000 8.23 0.00 0.00 3.95
747 853 1.092921 GCAATATCCACACCCGCGAA 61.093 55.000 8.23 0.00 0.00 4.70
748 854 1.522806 GCAATATCCACACCCGCGA 60.523 57.895 8.23 0.00 0.00 5.87
749 855 2.542907 GGCAATATCCACACCCGCG 61.543 63.158 0.00 0.00 0.00 6.46
750 856 0.751643 AAGGCAATATCCACACCCGC 60.752 55.000 0.00 0.00 0.00 6.13
756 862 0.304705 CACGCGAAGGCAATATCCAC 59.695 55.000 15.93 0.00 39.92 4.02
760 866 2.186826 GGGCACGCGAAGGCAATAT 61.187 57.895 24.79 0.00 39.92 1.28
771 877 2.586914 GTATGGGTACGGGCACGC 60.587 66.667 9.12 0.00 46.04 5.34
775 881 1.832167 TACGGGTATGGGTACGGGC 60.832 63.158 0.00 0.00 0.00 6.13
790 896 0.664224 AAAAGTTTGTGCCGGGTACG 59.336 50.000 10.74 0.00 40.55 3.67
791 897 2.099427 TGAAAAAGTTTGTGCCGGGTAC 59.901 45.455 8.46 8.46 0.00 3.34
792 898 2.376109 TGAAAAAGTTTGTGCCGGGTA 58.624 42.857 2.18 0.00 0.00 3.69
793 899 1.187087 TGAAAAAGTTTGTGCCGGGT 58.813 45.000 2.18 0.00 0.00 5.28
794 900 2.524569 ATGAAAAAGTTTGTGCCGGG 57.475 45.000 2.18 0.00 0.00 5.73
795 901 5.975410 TTAAATGAAAAAGTTTGTGCCGG 57.025 34.783 0.00 0.00 0.00 6.13
850 960 5.469084 CGGCTGGTAAAACCTTATTAGGATC 59.531 44.000 4.40 0.00 45.05 3.36
852 962 4.384427 CCGGCTGGTAAAACCTTATTAGGA 60.384 45.833 4.40 0.00 45.05 2.94
870 1012 4.710167 GTACCCGCAAACCCGGCT 62.710 66.667 0.00 0.00 46.77 5.52
889 1038 4.961099 TGGAATGGAATCAACATGGCAATA 59.039 37.500 0.00 0.00 0.00 1.90
903 1052 2.829120 GGGGAAAACGATTGGAATGGAA 59.171 45.455 0.00 0.00 0.00 3.53
932 1082 1.352687 GGGGAGAAGAAGTGCCTCTTT 59.647 52.381 0.00 0.00 35.76 2.52
935 1085 0.915364 ATGGGGAGAAGAAGTGCCTC 59.085 55.000 0.00 0.00 0.00 4.70
936 1086 1.283321 GAATGGGGAGAAGAAGTGCCT 59.717 52.381 0.00 0.00 0.00 4.75
937 1087 1.283321 AGAATGGGGAGAAGAAGTGCC 59.717 52.381 0.00 0.00 0.00 5.01
939 1089 3.988976 TGAGAATGGGGAGAAGAAGTG 57.011 47.619 0.00 0.00 0.00 3.16
940 1090 3.307059 CGTTGAGAATGGGGAGAAGAAGT 60.307 47.826 0.00 0.00 0.00 3.01
941 1091 3.265791 CGTTGAGAATGGGGAGAAGAAG 58.734 50.000 0.00 0.00 0.00 2.85
942 1092 2.615493 GCGTTGAGAATGGGGAGAAGAA 60.615 50.000 0.00 0.00 0.00 2.52
943 1093 1.066143 GCGTTGAGAATGGGGAGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
944 1094 1.373570 GCGTTGAGAATGGGGAGAAG 58.626 55.000 0.00 0.00 0.00 2.85
945 1095 0.035439 GGCGTTGAGAATGGGGAGAA 60.035 55.000 0.00 0.00 0.00 2.87
1192 1565 6.039717 CAGATGATCAAAACATACCGGGAAAT 59.960 38.462 6.32 0.00 0.00 2.17
1254 1641 4.934797 AAGGTCAGAATCCAGATCCAAA 57.065 40.909 0.00 0.00 0.00 3.28
1255 1642 4.568380 CCAAAGGTCAGAATCCAGATCCAA 60.568 45.833 0.00 0.00 0.00 3.53
1256 1643 3.054139 CCAAAGGTCAGAATCCAGATCCA 60.054 47.826 0.00 0.00 0.00 3.41
1257 1644 3.200825 TCCAAAGGTCAGAATCCAGATCC 59.799 47.826 0.00 0.00 0.00 3.36
1258 1645 4.494091 TCCAAAGGTCAGAATCCAGATC 57.506 45.455 0.00 0.00 0.00 2.75
1259 1646 4.725810 AGATCCAAAGGTCAGAATCCAGAT 59.274 41.667 0.00 0.00 0.00 2.90
1260 1647 4.080695 CAGATCCAAAGGTCAGAATCCAGA 60.081 45.833 0.00 0.00 0.00 3.86
1261 1648 4.197750 CAGATCCAAAGGTCAGAATCCAG 58.802 47.826 0.00 0.00 0.00 3.86
1262 1649 3.054139 CCAGATCCAAAGGTCAGAATCCA 60.054 47.826 0.00 0.00 0.00 3.41
1263 1650 3.200825 TCCAGATCCAAAGGTCAGAATCC 59.799 47.826 0.00 0.00 0.00 3.01
1264 1651 4.494091 TCCAGATCCAAAGGTCAGAATC 57.506 45.455 0.00 0.00 0.00 2.52
1265 1652 5.193325 AGAATCCAGATCCAAAGGTCAGAAT 59.807 40.000 0.00 0.00 0.00 2.40
1266 1653 4.537688 AGAATCCAGATCCAAAGGTCAGAA 59.462 41.667 0.00 0.00 0.00 3.02
1267 1654 4.080695 CAGAATCCAGATCCAAAGGTCAGA 60.081 45.833 0.00 0.00 0.00 3.27
1268 1655 4.080695 TCAGAATCCAGATCCAAAGGTCAG 60.081 45.833 0.00 0.00 0.00 3.51
1269 1656 3.845992 TCAGAATCCAGATCCAAAGGTCA 59.154 43.478 0.00 0.00 0.00 4.02
1270 1657 4.195416 GTCAGAATCCAGATCCAAAGGTC 58.805 47.826 0.00 0.00 0.00 3.85
1271 1658 3.054065 GGTCAGAATCCAGATCCAAAGGT 60.054 47.826 0.00 0.00 0.00 3.50
1272 1659 3.054139 TGGTCAGAATCCAGATCCAAAGG 60.054 47.826 0.00 0.00 0.00 3.11
1273 1660 4.226427 TGGTCAGAATCCAGATCCAAAG 57.774 45.455 0.00 0.00 0.00 2.77
1350 1790 4.910515 TGGGATTAACTATAAGACCCCCA 58.089 43.478 0.00 0.00 39.13 4.96
1351 1791 4.288887 CCTGGGATTAACTATAAGACCCCC 59.711 50.000 0.00 0.00 39.13 5.40
1415 1867 7.536855 AGAGAATAAAGAGCAAATTTGAGCAG 58.463 34.615 22.31 0.00 0.00 4.24
1460 1915 0.397675 TGGACATGCTCCGAGATCCT 60.398 55.000 0.00 0.00 43.03 3.24
1527 1982 4.711399 CCTTGGCTGATGACAGAATGATA 58.289 43.478 0.00 0.00 46.03 2.15
1532 1987 0.401356 TGCCTTGGCTGATGACAGAA 59.599 50.000 13.18 0.00 46.03 3.02
1934 2470 5.083533 ACACAATCCTCTTTTGCAAAACA 57.916 34.783 20.46 10.07 0.00 2.83
2260 2877 7.941977 ACCCCCTAAACTATTTATTGGTTACA 58.058 34.615 0.00 0.00 0.00 2.41
2337 2958 6.572119 CGGGTAACATATAAGCGGGTAACATA 60.572 42.308 0.00 0.00 36.54 2.29
2338 2959 5.554070 GGGTAACATATAAGCGGGTAACAT 58.446 41.667 0.00 0.00 36.54 2.71
2339 2960 4.501229 CGGGTAACATATAAGCGGGTAACA 60.501 45.833 0.00 0.00 36.54 2.41
2340 2961 3.989817 CGGGTAACATATAAGCGGGTAAC 59.010 47.826 0.00 0.00 39.74 2.50
2341 2962 3.554752 GCGGGTAACATATAAGCGGGTAA 60.555 47.826 0.00 0.00 39.74 2.85
2342 2963 2.029110 GCGGGTAACATATAAGCGGGTA 60.029 50.000 0.00 0.00 39.74 3.69
2343 2964 1.270465 GCGGGTAACATATAAGCGGGT 60.270 52.381 0.00 0.00 39.74 5.28
2344 2965 1.001633 AGCGGGTAACATATAAGCGGG 59.998 52.381 0.00 0.00 39.74 6.13
2345 2966 2.450609 AGCGGGTAACATATAAGCGG 57.549 50.000 0.00 0.00 39.74 5.52
2346 2967 4.806342 AAAAGCGGGTAACATATAAGCG 57.194 40.909 0.00 0.00 39.74 4.68
2347 2968 6.373186 AGAAAAAGCGGGTAACATATAAGC 57.627 37.500 0.00 0.00 39.74 3.09
2348 2969 8.455682 TCAAAGAAAAAGCGGGTAACATATAAG 58.544 33.333 0.00 0.00 39.74 1.73
2349 2970 8.338072 TCAAAGAAAAAGCGGGTAACATATAA 57.662 30.769 0.00 0.00 39.74 0.98
2350 2971 7.608761 ACTCAAAGAAAAAGCGGGTAACATATA 59.391 33.333 0.00 0.00 39.74 0.86
2351 2972 6.433093 ACTCAAAGAAAAAGCGGGTAACATAT 59.567 34.615 0.00 0.00 39.74 1.78
2352 2973 5.766174 ACTCAAAGAAAAAGCGGGTAACATA 59.234 36.000 0.00 0.00 39.74 2.29
2552 3180 1.064017 TGCACTGGGTCTGTCCTTTTT 60.064 47.619 0.00 0.00 36.25 1.94
2553 3181 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
2554 3182 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
2555 3183 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
2556 3184 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
2557 3185 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
2558 3186 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
2559 3187 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2560 3188 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
2561 3189 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
2562 3190 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
2563 3191 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
2564 3192 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
2565 3193 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2566 3194 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
2567 3195 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
2568 3196 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
2569 3197 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
2570 3198 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
2571 3199 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
2572 3200 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
2573 3201 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
2574 3202 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
2575 3203 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
2576 3204 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
2583 3211 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
2584 3212 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
2585 3213 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
2586 3214 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
2587 3215 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
2588 3216 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
2589 3217 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
2591 3219 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
2592 3220 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
2593 3221 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
2594 3222 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
2595 3223 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
2596 3224 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
2597 3225 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
2598 3226 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
2599 3227 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
2600 3228 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
2601 3229 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
2602 3230 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
2603 3231 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
2604 3232 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
2605 3233 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
2606 3234 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
2607 3235 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
2608 3236 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
2609 3237 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
2610 3238 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
2611 3239 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
2612 3240 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
2613 3241 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
2614 3242 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
2615 3243 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
2616 3244 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
2617 3245 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
2618 3246 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
2619 3247 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
2620 3248 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
2621 3249 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
2622 3250 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
2623 3251 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
2633 3261 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
2634 3262 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
2635 3263 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
2636 3264 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
2637 3265 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
2638 3266 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
2639 3267 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
2640 3268 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
2641 3269 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
2642 3270 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
2643 3271 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
2644 3272 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
2645 3273 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
2646 3274 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
2657 3285 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2658 3286 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2659 3287 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2660 3288 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2661 3289 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
2662 3290 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2663 3291 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2664 3292 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
2665 3293 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
2666 3294 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
2667 3295 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
2668 3296 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
2669 3297 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
2670 3298 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
2671 3299 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
2672 3300 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
2673 3301 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
2674 3302 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
2675 3303 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
2676 3304 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
2677 3305 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
2678 3306 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
2679 3307 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
2680 3308 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
2681 3309 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
2682 3310 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
2683 3311 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
2684 3312 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
2685 3313 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
2686 3314 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
2687 3315 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
2688 3316 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
2689 3317 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
2690 3318 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
2691 3319 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
2692 3320 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
2693 3321 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
2694 3322 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
2707 3335 0.259938 ATTTAAGAGGGCAGGCCTGG 59.740 55.000 33.46 15.81 36.10 4.45
2708 3336 1.213926 AGATTTAAGAGGGCAGGCCTG 59.786 52.381 29.34 29.34 36.10 4.85
2709 3337 1.492599 GAGATTTAAGAGGGCAGGCCT 59.507 52.381 17.36 17.36 36.10 5.19
2710 3338 1.477740 GGAGATTTAAGAGGGCAGGCC 60.478 57.143 4.33 4.33 0.00 5.19
2711 3339 1.212935 TGGAGATTTAAGAGGGCAGGC 59.787 52.381 0.00 0.00 0.00 4.85
2712 3340 3.872459 ATGGAGATTTAAGAGGGCAGG 57.128 47.619 0.00 0.00 0.00 4.85
2713 3341 5.684704 TGTAATGGAGATTTAAGAGGGCAG 58.315 41.667 0.00 0.00 0.00 4.85
2714 3342 5.708736 TGTAATGGAGATTTAAGAGGGCA 57.291 39.130 0.00 0.00 0.00 5.36
2715 3343 7.588497 AATTGTAATGGAGATTTAAGAGGGC 57.412 36.000 0.00 0.00 0.00 5.19
2819 3457 4.445452 AAATTGTAAGACGCGACTAGGA 57.555 40.909 15.93 0.00 0.00 2.94
3210 4035 9.559958 GATTGGTCTTACAATGTGAAGTAAATG 57.440 33.333 0.00 0.00 40.92 2.32
3266 5383 2.582978 GTACTCCGAACAGGGCCC 59.417 66.667 16.46 16.46 41.52 5.80
3306 5423 1.270907 CTGTAACTCCACCAGCTCCT 58.729 55.000 0.00 0.00 0.00 3.69
3335 5452 1.066143 CAGGAAATAGGTGCTCCGTGT 60.066 52.381 0.00 0.00 39.05 4.49
3402 5519 5.227569 TGATGCAAAAGAGACTAAGACCA 57.772 39.130 0.00 0.00 0.00 4.02
3567 5710 4.003648 AGAGCCCGAACTATTTTGTTCAG 58.996 43.478 7.91 0.00 44.59 3.02
3568 5711 4.015872 AGAGCCCGAACTATTTTGTTCA 57.984 40.909 7.91 0.00 44.59 3.18
3569 5712 4.379499 CCAAGAGCCCGAACTATTTTGTTC 60.379 45.833 0.00 0.00 41.91 3.18
3649 5842 6.226787 ACATAAGCCTATCGAGATGAAAAGG 58.773 40.000 0.00 0.00 37.05 3.11
3809 6008 3.317993 ACTTGCCACACCATTTACTTCAC 59.682 43.478 0.00 0.00 0.00 3.18
4055 7824 0.415830 TCCATACTCCCCACAGGTCA 59.584 55.000 0.00 0.00 36.75 4.02
4403 8181 6.035435 CGAATTCAGTCTTTATCTGGTGAGTG 59.965 42.308 6.22 0.00 34.15 3.51
4410 8188 5.874810 TCAACCCGAATTCAGTCTTTATCTG 59.125 40.000 6.22 0.00 0.00 2.90
4655 8455 0.389948 CGCACCCTTACAGTCCAGAC 60.390 60.000 0.00 0.00 0.00 3.51
4726 8527 2.098934 GCATCCAAACGGATTATGCACA 59.901 45.455 0.00 0.00 41.64 4.57
4728 8529 2.098934 GTGCATCCAAACGGATTATGCA 59.901 45.455 4.30 4.30 41.64 3.96
4731 8532 2.951642 CAGGTGCATCCAAACGGATTAT 59.048 45.455 0.00 0.00 41.64 1.28
4732 8533 2.364632 CAGGTGCATCCAAACGGATTA 58.635 47.619 0.00 0.00 41.64 1.75
4733 8534 1.176527 CAGGTGCATCCAAACGGATT 58.823 50.000 0.00 0.00 41.64 3.01
4734 8535 0.680921 CCAGGTGCATCCAAACGGAT 60.681 55.000 0.00 0.00 44.60 4.18
4735 8536 1.303236 CCAGGTGCATCCAAACGGA 60.303 57.895 0.00 0.00 39.02 4.69
4736 8537 2.342650 CCCAGGTGCATCCAAACGG 61.343 63.158 0.00 0.00 39.02 4.44
4737 8538 2.993471 GCCCAGGTGCATCCAAACG 61.993 63.158 0.00 0.00 39.02 3.60
4738 8539 2.649129 GGCCCAGGTGCATCCAAAC 61.649 63.158 0.00 0.00 39.02 2.93
4739 8540 2.283821 GGCCCAGGTGCATCCAAA 60.284 61.111 0.00 0.00 39.02 3.28
4740 8541 3.588511 TGGCCCAGGTGCATCCAA 61.589 61.111 0.00 0.00 39.02 3.53
4741 8542 4.365111 GTGGCCCAGGTGCATCCA 62.365 66.667 0.00 0.00 39.02 3.41
4771 8572 7.097623 AGGATTCAGACTAGGATTAGAGCTA 57.902 40.000 0.00 0.00 0.00 3.32
4803 8604 3.550275 CGATTAATTTCCTCGCGAACTGA 59.450 43.478 11.33 4.22 0.00 3.41
4963 8765 1.819928 CCATGATGACGGACAACCAA 58.180 50.000 0.00 0.00 35.59 3.67
4968 8770 0.324614 AACTGCCATGATGACGGACA 59.675 50.000 0.00 0.00 0.00 4.02
4979 8781 2.682352 GGTGTTTTTGCAAAACTGCCAT 59.318 40.909 23.79 0.00 0.00 4.40
4998 8801 3.071892 TGATTTCACGTAAACTCAGGGGT 59.928 43.478 0.00 0.00 0.00 4.95
5056 8859 9.890085 GGTTATTTTTGTAAAAAGTGAAACGTC 57.110 29.630 8.31 0.00 45.86 4.34
5066 8869 9.610705 GGGTTTACAGGGTTATTTTTGTAAAAA 57.389 29.630 9.44 5.13 43.52 1.94
5135 8943 4.717629 CGACTTGCGGGCACGAGA 62.718 66.667 15.48 0.00 44.60 4.04
5248 9066 1.850345 AGGAGATCGAGAGGAAGGAGT 59.150 52.381 0.00 0.00 0.00 3.85
5291 9109 0.254178 CATGGAGGTCCCTGTTCAGG 59.746 60.000 11.52 11.52 35.38 3.86
5354 9172 1.303317 GTGGATTTGGCGTGGAGGT 60.303 57.895 0.00 0.00 0.00 3.85
5371 9189 2.298661 GGGTGGATCCACTTCCGGT 61.299 63.158 37.26 0.00 45.52 5.28
5378 9196 3.006728 TGACCGGGGTGGATCCAC 61.007 66.667 33.14 33.14 45.49 4.02
5393 9211 2.833582 GAGGCCGGTCGGATCTGA 60.834 66.667 14.15 0.00 37.50 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.