Multiple sequence alignment - TraesCS7A01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G434900 chr7A 100.000 2908 0 0 1 2908 628644679 628647586 0.000000e+00 5371.0
1 TraesCS7A01G434900 chr7A 93.119 1773 75 21 774 2533 627232599 627230861 0.000000e+00 2555.0
2 TraesCS7A01G434900 chr7A 92.541 925 54 6 820 1740 628385899 628384986 0.000000e+00 1312.0
3 TraesCS7A01G434900 chr7A 88.498 739 69 5 969 1706 628487974 628487251 0.000000e+00 880.0
4 TraesCS7A01G434900 chr7A 88.842 717 71 5 1034 1749 628520615 628521323 0.000000e+00 872.0
5 TraesCS7A01G434900 chr7A 84.693 797 91 21 970 1749 628492196 628491414 0.000000e+00 767.0
6 TraesCS7A01G434900 chr7A 83.636 330 22 11 2527 2834 594449507 594449826 6.140000e-72 281.0
7 TraesCS7A01G434900 chr7A 85.787 197 18 2 2714 2901 628489669 628489474 1.770000e-47 200.0
8 TraesCS7A01G434900 chr7A 89.375 160 8 1 2751 2901 628521815 628521974 2.960000e-45 193.0
9 TraesCS7A01G434900 chr7A 92.500 120 8 1 330 449 638697140 638697022 1.390000e-38 171.0
10 TraesCS7A01G434900 chr7A 78.623 276 29 13 2647 2901 627230114 627229848 3.880000e-34 156.0
11 TraesCS7A01G434900 chr7A 92.453 106 3 4 437 540 628386478 628386376 2.340000e-31 147.0
12 TraesCS7A01G434900 chr7A 88.462 78 6 3 437 514 627051848 627051774 1.110000e-14 91.6
13 TraesCS7A01G434900 chr5D 95.151 1691 66 8 858 2533 289355290 289353601 0.000000e+00 2654.0
14 TraesCS7A01G434900 chr5D 93.217 1784 88 17 774 2533 289421182 289419408 0.000000e+00 2593.0
15 TraesCS7A01G434900 chr5D 89.623 106 6 4 437 540 289356207 289356105 2.350000e-26 130.0
16 TraesCS7A01G434900 chr5D 89.610 77 8 0 253 329 29906264 29906340 6.630000e-17 99.0
17 TraesCS7A01G434900 chr5D 88.095 84 8 2 245 326 289497009 289496926 6.630000e-17 99.0
18 TraesCS7A01G434900 chr5D 85.882 85 11 1 245 329 289727686 289727603 3.990000e-14 89.8
19 TraesCS7A01G434900 chr1B 91.671 1789 100 20 774 2530 426497057 426495286 0.000000e+00 2433.0
20 TraesCS7A01G434900 chr1B 97.750 800 16 1 1736 2533 133110648 133109849 0.000000e+00 1376.0
21 TraesCS7A01G434900 chr1B 97.625 800 17 1 1736 2533 133123277 133122478 0.000000e+00 1371.0
22 TraesCS7A01G434900 chr1B 97.250 800 19 2 1736 2533 426481238 426480440 0.000000e+00 1352.0
23 TraesCS7A01G434900 chr1B 90.519 886 68 11 820 1690 133124159 133123275 0.000000e+00 1157.0
24 TraesCS7A01G434900 chr1B 88.768 276 14 8 2641 2901 398839188 398838915 3.620000e-84 322.0
25 TraesCS7A01G434900 chr1B 92.126 127 9 1 323 449 386204599 386204474 8.280000e-41 178.0
26 TraesCS7A01G434900 chr1B 85.057 87 9 4 245 329 426482775 426482691 5.160000e-13 86.1
27 TraesCS7A01G434900 chr1B 88.889 63 7 0 436 498 133112056 133111994 8.640000e-11 78.7
28 TraesCS7A01G434900 chr6A 91.597 1785 93 18 770 2527 107264326 107266080 0.000000e+00 2412.0
29 TraesCS7A01G434900 chr6A 90.270 185 11 4 2641 2820 158244237 158244055 4.840000e-58 235.0
30 TraesCS7A01G434900 chr6A 94.017 117 6 1 322 437 100354511 100354395 2.980000e-40 176.0
31 TraesCS7A01G434900 chr7D 98.659 820 8 2 1716 2533 545266201 545265383 0.000000e+00 1450.0
32 TraesCS7A01G434900 chr7D 86.966 959 95 18 796 1740 545650433 545651375 0.000000e+00 1051.0
33 TraesCS7A01G434900 chr7D 83.183 333 21 14 2527 2834 518775012 518775334 3.690000e-69 272.0
34 TraesCS7A01G434900 chr7D 83.793 290 15 11 2640 2901 545651677 545651962 2.240000e-61 246.0
35 TraesCS7A01G434900 chr7D 87.845 181 9 3 2641 2821 545652932 545653099 1.770000e-47 200.0
36 TraesCS7A01G434900 chr7D 76.945 347 38 25 2572 2886 545618798 545618462 3.000000e-35 159.0
37 TraesCS7A01G434900 chr7D 78.571 266 29 13 2655 2901 545648352 545648608 1.810000e-32 150.0
38 TraesCS7A01G434900 chr7D 85.616 146 13 5 2636 2775 546777945 546778088 2.340000e-31 147.0
39 TraesCS7A01G434900 chr7D 97.297 74 2 0 631 704 518768841 518768914 3.040000e-25 126.0
40 TraesCS7A01G434900 chr7D 76.950 282 28 16 2640 2893 545621344 545621072 3.040000e-25 126.0
41 TraesCS7A01G434900 chr7D 93.056 72 5 0 633 704 545650447 545650518 3.960000e-19 106.0
42 TraesCS7A01G434900 chr7B 90.312 929 58 19 774 1690 588823533 588822625 0.000000e+00 1188.0
43 TraesCS7A01G434900 chr7B 90.135 892 66 13 820 1690 589735303 589736193 0.000000e+00 1140.0
44 TraesCS7A01G434900 chr7B 83.793 290 15 11 2640 2901 589936162 589936447 2.240000e-61 246.0
45 TraesCS7A01G434900 chr7B 88.325 197 13 2 2714 2901 589698183 589697988 8.110000e-56 228.0
46 TraesCS7A01G434900 chr7B 85.405 185 9 4 2641 2821 589937418 589937588 2.980000e-40 176.0
47 TraesCS7A01G434900 chr7B 88.806 134 13 1 329 460 513956249 513956116 2.320000e-36 163.0
48 TraesCS7A01G434900 chr7B 93.396 106 5 2 437 540 589919353 589919458 3.880000e-34 156.0
49 TraesCS7A01G434900 chr7B 77.287 317 23 20 437 704 589934701 589935017 1.090000e-29 141.0
50 TraesCS7A01G434900 chr7B 87.059 85 11 0 245 329 589734627 589734711 2.390000e-16 97.1
51 TraesCS7A01G434900 chr7B 85.897 78 11 0 436 513 589734713 589734790 1.860000e-12 84.2
52 TraesCS7A01G434900 chr7B 97.727 44 1 0 286 329 589919305 589919348 3.110000e-10 76.8
53 TraesCS7A01G434900 chr6D 83.230 322 20 13 2527 2821 122990771 122991085 6.180000e-67 265.0
54 TraesCS7A01G434900 chr6D 98.039 51 1 0 2858 2908 122980976 122981026 3.990000e-14 89.8
55 TraesCS7A01G434900 chr6B 90.270 185 12 3 2641 2821 216632955 216633137 1.350000e-58 237.0
56 TraesCS7A01G434900 chr2A 94.828 116 6 0 327 442 377610759 377610874 6.400000e-42 182.0
57 TraesCS7A01G434900 chr2A 94.643 112 6 0 325 436 722814119 722814008 1.070000e-39 174.0
58 TraesCS7A01G434900 chr5A 94.783 115 5 1 323 436 95823074 95823188 8.280000e-41 178.0
59 TraesCS7A01G434900 chr1A 95.495 111 5 0 326 436 493213056 493212946 8.280000e-41 178.0
60 TraesCS7A01G434900 chr2B 91.270 126 9 2 322 445 131290778 131290903 1.390000e-38 171.0
61 TraesCS7A01G434900 chr3D 92.784 97 7 0 2732 2828 43565406 43565310 1.090000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G434900 chr7A 628644679 628647586 2907 False 5371.000000 5371 100.0000 1 2908 1 chr7A.!!$F2 2907
1 TraesCS7A01G434900 chr7A 627229848 627232599 2751 True 1355.500000 2555 85.8710 774 2901 2 chr7A.!!$R3 2127
2 TraesCS7A01G434900 chr7A 628384986 628386478 1492 True 729.500000 1312 92.4970 437 1740 2 chr7A.!!$R4 1303
3 TraesCS7A01G434900 chr7A 628487251 628492196 4945 True 615.666667 880 86.3260 969 2901 3 chr7A.!!$R5 1932
4 TraesCS7A01G434900 chr7A 628520615 628521974 1359 False 532.500000 872 89.1085 1034 2901 2 chr7A.!!$F3 1867
5 TraesCS7A01G434900 chr5D 289419408 289421182 1774 True 2593.000000 2593 93.2170 774 2533 1 chr5D.!!$R1 1759
6 TraesCS7A01G434900 chr5D 289353601 289356207 2606 True 1392.000000 2654 92.3870 437 2533 2 chr5D.!!$R4 2096
7 TraesCS7A01G434900 chr1B 426495286 426497057 1771 True 2433.000000 2433 91.6710 774 2530 1 chr1B.!!$R3 1756
8 TraesCS7A01G434900 chr1B 133122478 133124159 1681 True 1264.000000 1371 94.0720 820 2533 2 chr1B.!!$R5 1713
9 TraesCS7A01G434900 chr1B 133109849 133112056 2207 True 727.350000 1376 93.3195 436 2533 2 chr1B.!!$R4 2097
10 TraesCS7A01G434900 chr1B 426480440 426482775 2335 True 719.050000 1352 91.1535 245 2533 2 chr1B.!!$R6 2288
11 TraesCS7A01G434900 chr6A 107264326 107266080 1754 False 2412.000000 2412 91.5970 770 2527 1 chr6A.!!$F1 1757
12 TraesCS7A01G434900 chr7D 545265383 545266201 818 True 1450.000000 1450 98.6590 1716 2533 1 chr7D.!!$R1 817
13 TraesCS7A01G434900 chr7D 545648352 545653099 4747 False 350.600000 1051 86.0462 633 2901 5 chr7D.!!$F4 2268
14 TraesCS7A01G434900 chr7B 588822625 588823533 908 True 1188.000000 1188 90.3120 774 1690 1 chr7B.!!$R2 916
15 TraesCS7A01G434900 chr7B 589734627 589736193 1566 False 440.433333 1140 87.6970 245 1690 3 chr7B.!!$F1 1445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 620 0.03213 TGAAGCAGAGAGACGCGTTT 59.968 50.0 15.53 7.97 0.0 3.6 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2554 9849 1.601903 TGGTCAAATCGTGTGCTTGTC 59.398 47.619 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.888430 CATGTAACCTTTTGACAGTGAGTAC 58.112 40.000 0.00 0.00 0.00 2.73
25 26 6.229936 TGTAACCTTTTGACAGTGAGTACT 57.770 37.500 0.00 0.00 37.75 2.73
26 27 6.278363 TGTAACCTTTTGACAGTGAGTACTC 58.722 40.000 16.32 16.32 34.07 2.59
27 28 4.338379 ACCTTTTGACAGTGAGTACTCC 57.662 45.455 20.11 11.29 34.07 3.85
28 29 3.967987 ACCTTTTGACAGTGAGTACTCCT 59.032 43.478 20.11 13.32 34.07 3.69
29 30 4.409247 ACCTTTTGACAGTGAGTACTCCTT 59.591 41.667 20.11 5.44 34.07 3.36
30 31 4.752101 CCTTTTGACAGTGAGTACTCCTTG 59.248 45.833 20.11 18.58 34.07 3.61
31 32 5.453339 CCTTTTGACAGTGAGTACTCCTTGA 60.453 44.000 23.07 4.00 34.07 3.02
33 34 3.562182 TGACAGTGAGTACTCCTTGACA 58.438 45.455 23.07 20.42 34.07 3.58
34 35 4.152647 TGACAGTGAGTACTCCTTGACAT 58.847 43.478 23.07 8.48 34.07 3.06
35 36 4.588951 TGACAGTGAGTACTCCTTGACATT 59.411 41.667 23.07 7.22 34.07 2.71
37 38 6.437477 TGACAGTGAGTACTCCTTGACATTAT 59.563 38.462 23.07 6.42 34.07 1.28
39 40 7.773149 ACAGTGAGTACTCCTTGACATTATAC 58.227 38.462 23.07 10.74 34.07 1.47
40 41 7.396339 ACAGTGAGTACTCCTTGACATTATACA 59.604 37.037 23.07 0.00 34.07 2.29
43 44 8.251721 GTGAGTACTCCTTGACATTATACACTT 58.748 37.037 20.11 0.00 0.00 3.16
44 45 8.251026 TGAGTACTCCTTGACATTATACACTTG 58.749 37.037 20.11 0.00 0.00 3.16
45 46 7.042335 AGTACTCCTTGACATTATACACTTGC 58.958 38.462 0.00 0.00 0.00 4.01
46 47 5.186198 ACTCCTTGACATTATACACTTGCC 58.814 41.667 0.00 0.00 0.00 4.52
47 48 5.172687 TCCTTGACATTATACACTTGCCA 57.827 39.130 0.00 0.00 0.00 4.92
48 49 4.941263 TCCTTGACATTATACACTTGCCAC 59.059 41.667 0.00 0.00 0.00 5.01
49 50 4.096382 CCTTGACATTATACACTTGCCACC 59.904 45.833 0.00 0.00 0.00 4.61
50 51 4.293662 TGACATTATACACTTGCCACCA 57.706 40.909 0.00 0.00 0.00 4.17
51 52 4.657013 TGACATTATACACTTGCCACCAA 58.343 39.130 0.00 0.00 0.00 3.67
62 63 2.136298 TGCCACCAAGTTCAGTTTGA 57.864 45.000 0.00 0.00 0.00 2.69
63 64 1.748493 TGCCACCAAGTTCAGTTTGAC 59.252 47.619 0.00 0.00 0.00 3.18
64 65 2.024414 GCCACCAAGTTCAGTTTGACT 58.976 47.619 0.00 0.00 0.00 3.41
65 66 2.033424 GCCACCAAGTTCAGTTTGACTC 59.967 50.000 0.00 0.00 0.00 3.36
66 67 3.545703 CCACCAAGTTCAGTTTGACTCT 58.454 45.455 0.00 0.00 0.00 3.24
67 68 3.561725 CCACCAAGTTCAGTTTGACTCTC 59.438 47.826 0.00 0.00 0.00 3.20
68 69 4.446371 CACCAAGTTCAGTTTGACTCTCT 58.554 43.478 0.00 0.00 0.00 3.10
70 71 5.007136 CACCAAGTTCAGTTTGACTCTCTTC 59.993 44.000 0.00 0.00 0.00 2.87
71 72 4.513318 CCAAGTTCAGTTTGACTCTCTTCC 59.487 45.833 0.00 0.00 0.00 3.46
74 75 6.339587 AGTTCAGTTTGACTCTCTTCCTAG 57.660 41.667 0.00 0.00 0.00 3.02
75 76 4.792521 TCAGTTTGACTCTCTTCCTAGC 57.207 45.455 0.00 0.00 0.00 3.42
77 78 4.461081 TCAGTTTGACTCTCTTCCTAGCTC 59.539 45.833 0.00 0.00 0.00 4.09
78 79 4.462483 CAGTTTGACTCTCTTCCTAGCTCT 59.538 45.833 0.00 0.00 0.00 4.09
79 80 5.047377 CAGTTTGACTCTCTTCCTAGCTCTT 60.047 44.000 0.00 0.00 0.00 2.85
80 81 5.542251 AGTTTGACTCTCTTCCTAGCTCTTT 59.458 40.000 0.00 0.00 0.00 2.52
81 82 5.652994 TTGACTCTCTTCCTAGCTCTTTC 57.347 43.478 0.00 0.00 0.00 2.62
82 83 4.667573 TGACTCTCTTCCTAGCTCTTTCA 58.332 43.478 0.00 0.00 0.00 2.69
83 84 5.268387 TGACTCTCTTCCTAGCTCTTTCAT 58.732 41.667 0.00 0.00 0.00 2.57
84 85 6.427441 TGACTCTCTTCCTAGCTCTTTCATA 58.573 40.000 0.00 0.00 0.00 2.15
85 86 6.545666 TGACTCTCTTCCTAGCTCTTTCATAG 59.454 42.308 0.00 0.00 0.00 2.23
86 87 6.431722 ACTCTCTTCCTAGCTCTTTCATAGT 58.568 40.000 0.00 0.00 0.00 2.12
87 88 6.546034 ACTCTCTTCCTAGCTCTTTCATAGTC 59.454 42.308 0.00 0.00 0.00 2.59
89 90 6.320164 TCTCTTCCTAGCTCTTTCATAGTCAC 59.680 42.308 0.00 0.00 0.00 3.67
90 91 6.191315 TCTTCCTAGCTCTTTCATAGTCACT 58.809 40.000 0.00 0.00 0.00 3.41
91 92 6.665680 TCTTCCTAGCTCTTTCATAGTCACTT 59.334 38.462 0.00 0.00 0.00 3.16
92 93 7.834681 TCTTCCTAGCTCTTTCATAGTCACTTA 59.165 37.037 0.00 0.00 0.00 2.24
93 94 7.575414 TCCTAGCTCTTTCATAGTCACTTAG 57.425 40.000 0.00 0.00 0.00 2.18
96 97 8.904834 CCTAGCTCTTTCATAGTCACTTAGTAA 58.095 37.037 0.00 0.00 0.00 2.24
98 99 7.777095 AGCTCTTTCATAGTCACTTAGTAAGG 58.223 38.462 14.36 3.82 0.00 2.69
99 100 7.616150 AGCTCTTTCATAGTCACTTAGTAAGGA 59.384 37.037 14.36 6.01 0.00 3.36
100 101 7.703197 GCTCTTTCATAGTCACTTAGTAAGGAC 59.297 40.741 14.36 16.08 0.00 3.85
101 102 8.645814 TCTTTCATAGTCACTTAGTAAGGACA 57.354 34.615 22.69 14.31 33.71 4.02
103 104 7.770366 TTCATAGTCACTTAGTAAGGACACA 57.230 36.000 22.69 15.09 33.71 3.72
104 105 7.770366 TCATAGTCACTTAGTAAGGACACAA 57.230 36.000 22.69 13.71 33.71 3.33
105 106 8.362464 TCATAGTCACTTAGTAAGGACACAAT 57.638 34.615 22.69 14.74 33.71 2.71
106 107 8.812972 TCATAGTCACTTAGTAAGGACACAATT 58.187 33.333 22.69 11.52 33.71 2.32
108 109 7.964604 AGTCACTTAGTAAGGACACAATTTC 57.035 36.000 22.69 4.82 33.71 2.17
110 111 7.657761 AGTCACTTAGTAAGGACACAATTTCTG 59.342 37.037 22.69 7.80 33.71 3.02
111 112 6.426937 TCACTTAGTAAGGACACAATTTCTGC 59.573 38.462 14.36 0.00 0.00 4.26
112 113 5.408604 ACTTAGTAAGGACACAATTTCTGCG 59.591 40.000 14.36 0.00 0.00 5.18
113 114 3.740115 AGTAAGGACACAATTTCTGCGT 58.260 40.909 0.00 0.00 0.00 5.24
114 115 3.498397 AGTAAGGACACAATTTCTGCGTG 59.502 43.478 0.00 0.00 36.70 5.34
117 118 1.001378 GGACACAATTTCTGCGTGCTT 60.001 47.619 0.00 0.00 33.89 3.91
121 122 1.949525 ACAATTTCTGCGTGCTTCTGT 59.050 42.857 0.00 0.00 0.00 3.41
125 126 4.829064 ATTTCTGCGTGCTTCTGTAAAA 57.171 36.364 0.00 0.00 0.00 1.52
127 128 3.811722 TCTGCGTGCTTCTGTAAAATG 57.188 42.857 0.00 0.00 0.00 2.32
128 129 2.483877 TCTGCGTGCTTCTGTAAAATGG 59.516 45.455 0.00 0.00 0.00 3.16
129 130 1.068610 TGCGTGCTTCTGTAAAATGGC 60.069 47.619 0.00 0.00 0.00 4.40
130 131 1.068610 GCGTGCTTCTGTAAAATGGCA 60.069 47.619 0.00 0.00 0.00 4.92
131 132 2.855180 CGTGCTTCTGTAAAATGGCAG 58.145 47.619 0.00 0.00 0.00 4.85
132 133 2.483877 CGTGCTTCTGTAAAATGGCAGA 59.516 45.455 0.00 0.00 39.66 4.26
133 134 3.425359 CGTGCTTCTGTAAAATGGCAGAG 60.425 47.826 0.00 0.00 41.93 3.35
135 136 2.424956 GCTTCTGTAAAATGGCAGAGGG 59.575 50.000 0.00 0.00 41.93 4.30
136 137 3.690460 CTTCTGTAAAATGGCAGAGGGT 58.310 45.455 0.00 0.00 41.93 4.34
137 138 3.071874 TCTGTAAAATGGCAGAGGGTG 57.928 47.619 0.00 0.00 36.89 4.61
138 139 2.094675 CTGTAAAATGGCAGAGGGTGG 58.905 52.381 0.00 0.00 34.87 4.61
139 140 1.272425 TGTAAAATGGCAGAGGGTGGG 60.272 52.381 0.00 0.00 0.00 4.61
141 142 1.080638 AAAATGGCAGAGGGTGGGTA 58.919 50.000 0.00 0.00 0.00 3.69
142 143 0.331616 AAATGGCAGAGGGTGGGTAC 59.668 55.000 0.00 0.00 0.00 3.34
143 144 0.844661 AATGGCAGAGGGTGGGTACA 60.845 55.000 0.00 0.00 0.00 2.90
144 145 1.562672 ATGGCAGAGGGTGGGTACAC 61.563 60.000 0.00 0.00 46.97 2.90
157 158 2.369203 TGGGTACACGAATCAGTTGGAA 59.631 45.455 0.00 0.00 0.00 3.53
158 159 3.181453 TGGGTACACGAATCAGTTGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
160 161 4.276431 GGGTACACGAATCAGTTGGAAAAA 59.724 41.667 0.00 0.00 0.00 1.94
194 195 9.347934 CTTTAGACATGAAACTGTACTCTAGTG 57.652 37.037 0.00 0.00 0.00 2.74
195 196 8.631480 TTAGACATGAAACTGTACTCTAGTGA 57.369 34.615 0.00 0.00 0.00 3.41
196 197 7.151999 AGACATGAAACTGTACTCTAGTGAG 57.848 40.000 0.00 0.00 45.43 3.51
197 198 5.715070 ACATGAAACTGTACTCTAGTGAGC 58.285 41.667 0.00 0.00 43.85 4.26
198 199 5.478679 ACATGAAACTGTACTCTAGTGAGCT 59.521 40.000 0.00 0.00 43.85 4.09
199 200 5.630661 TGAAACTGTACTCTAGTGAGCTC 57.369 43.478 6.82 6.82 43.85 4.09
200 201 4.459685 TGAAACTGTACTCTAGTGAGCTCC 59.540 45.833 12.15 2.40 43.85 4.70
203 204 4.408276 ACTGTACTCTAGTGAGCTCCAAA 58.592 43.478 12.15 0.00 43.85 3.28
205 206 4.408276 TGTACTCTAGTGAGCTCCAAAGT 58.592 43.478 12.15 9.96 43.85 2.66
206 207 3.951775 ACTCTAGTGAGCTCCAAAGTG 57.048 47.619 12.15 8.74 43.85 3.16
207 208 3.235200 ACTCTAGTGAGCTCCAAAGTGT 58.765 45.455 12.15 9.34 43.85 3.55
208 209 4.408276 ACTCTAGTGAGCTCCAAAGTGTA 58.592 43.478 12.15 0.00 43.85 2.90
209 210 4.833380 ACTCTAGTGAGCTCCAAAGTGTAA 59.167 41.667 12.15 0.00 43.85 2.41
210 211 5.304614 ACTCTAGTGAGCTCCAAAGTGTAAA 59.695 40.000 12.15 0.00 43.85 2.01
211 212 5.784177 TCTAGTGAGCTCCAAAGTGTAAAG 58.216 41.667 12.15 0.00 0.00 1.85
212 213 4.689612 AGTGAGCTCCAAAGTGTAAAGA 57.310 40.909 12.15 0.00 0.00 2.52
213 214 5.036117 AGTGAGCTCCAAAGTGTAAAGAA 57.964 39.130 12.15 0.00 0.00 2.52
215 216 5.529060 AGTGAGCTCCAAAGTGTAAAGAAAG 59.471 40.000 12.15 0.00 0.00 2.62
217 218 5.527582 TGAGCTCCAAAGTGTAAAGAAAGAC 59.472 40.000 12.15 0.00 0.00 3.01
218 219 5.437060 AGCTCCAAAGTGTAAAGAAAGACA 58.563 37.500 0.00 0.00 0.00 3.41
219 220 5.529060 AGCTCCAAAGTGTAAAGAAAGACAG 59.471 40.000 0.00 0.00 0.00 3.51
220 221 5.297029 GCTCCAAAGTGTAAAGAAAGACAGT 59.703 40.000 0.00 0.00 0.00 3.55
221 222 6.511929 GCTCCAAAGTGTAAAGAAAGACAGTC 60.512 42.308 0.00 0.00 0.00 3.51
222 223 6.411376 TCCAAAGTGTAAAGAAAGACAGTCA 58.589 36.000 2.66 0.00 0.00 3.41
223 224 6.538742 TCCAAAGTGTAAAGAAAGACAGTCAG 59.461 38.462 2.66 0.00 0.00 3.51
224 225 6.238484 CCAAAGTGTAAAGAAAGACAGTCAGG 60.238 42.308 2.66 0.00 0.00 3.86
225 226 5.615925 AGTGTAAAGAAAGACAGTCAGGT 57.384 39.130 2.66 0.00 0.00 4.00
226 227 6.726490 AGTGTAAAGAAAGACAGTCAGGTA 57.274 37.500 2.66 0.00 0.00 3.08
227 228 7.304497 AGTGTAAAGAAAGACAGTCAGGTAT 57.696 36.000 2.66 0.00 0.00 2.73
228 229 8.418597 AGTGTAAAGAAAGACAGTCAGGTATA 57.581 34.615 2.66 0.00 0.00 1.47
229 230 8.524487 AGTGTAAAGAAAGACAGTCAGGTATAG 58.476 37.037 2.66 0.00 0.00 1.31
231 232 9.524496 TGTAAAGAAAGACAGTCAGGTATAGTA 57.476 33.333 2.66 0.00 0.00 1.82
233 234 6.702716 AGAAAGACAGTCAGGTATAGTAGC 57.297 41.667 2.66 0.00 0.00 3.58
234 235 6.188407 AGAAAGACAGTCAGGTATAGTAGCA 58.812 40.000 2.66 0.00 0.00 3.49
235 236 6.663953 AGAAAGACAGTCAGGTATAGTAGCAA 59.336 38.462 2.66 0.00 0.00 3.91
236 237 6.852420 AAGACAGTCAGGTATAGTAGCAAA 57.148 37.500 2.66 0.00 0.00 3.68
237 238 6.458232 AGACAGTCAGGTATAGTAGCAAAG 57.542 41.667 2.66 0.00 0.00 2.77
238 239 5.361285 AGACAGTCAGGTATAGTAGCAAAGG 59.639 44.000 2.66 0.00 0.00 3.11
239 240 4.141914 ACAGTCAGGTATAGTAGCAAAGGC 60.142 45.833 0.00 0.00 41.61 4.35
240 241 4.030913 AGTCAGGTATAGTAGCAAAGGCA 58.969 43.478 0.00 0.00 44.61 4.75
241 242 4.120589 GTCAGGTATAGTAGCAAAGGCAC 58.879 47.826 0.00 0.00 44.61 5.01
242 243 3.772572 TCAGGTATAGTAGCAAAGGCACA 59.227 43.478 0.00 0.00 44.61 4.57
243 244 4.408921 TCAGGTATAGTAGCAAAGGCACAT 59.591 41.667 0.00 0.00 44.61 3.21
247 248 4.970662 ATAGTAGCAAAGGCACATTGTG 57.029 40.909 12.54 12.54 44.61 3.33
250 251 1.696063 AGCAAAGGCACATTGTGAGT 58.304 45.000 20.77 3.30 44.61 3.41
279 280 1.506718 GGCTTTTTACGGCTCAGGC 59.493 57.895 0.00 0.00 37.82 4.85
300 301 4.645956 GCAGCGTGCATATTTGAGATATC 58.354 43.478 0.00 0.00 44.26 1.63
315 316 7.439157 TTGAGATATCAAGACCAGTTTTGTG 57.561 36.000 5.32 0.00 0.00 3.33
316 317 5.939883 TGAGATATCAAGACCAGTTTTGTGG 59.060 40.000 5.32 0.00 44.01 4.17
321 322 2.348411 AGACCAGTTTTGTGGAGTGG 57.652 50.000 0.00 0.00 40.44 4.00
329 330 6.326323 ACCAGTTTTGTGGAGTGGAAATAAAT 59.674 34.615 5.06 0.00 40.44 1.40
330 331 7.507616 ACCAGTTTTGTGGAGTGGAAATAAATA 59.492 33.333 5.06 0.00 40.44 1.40
331 332 7.812669 CCAGTTTTGTGGAGTGGAAATAAATAC 59.187 37.037 0.00 0.00 40.44 1.89
332 333 8.576442 CAGTTTTGTGGAGTGGAAATAAATACT 58.424 33.333 0.00 0.00 0.00 2.12
333 334 8.793592 AGTTTTGTGGAGTGGAAATAAATACTC 58.206 33.333 0.00 0.00 38.98 2.59
339 340 5.291905 AGTGGAAATAAATACTCCCTCCG 57.708 43.478 0.00 0.00 0.00 4.63
340 341 4.720273 AGTGGAAATAAATACTCCCTCCGT 59.280 41.667 0.00 0.00 0.00 4.69
341 342 5.191124 AGTGGAAATAAATACTCCCTCCGTT 59.809 40.000 0.00 0.00 0.00 4.44
342 343 5.526479 GTGGAAATAAATACTCCCTCCGTTC 59.474 44.000 0.00 0.00 0.00 3.95
343 344 4.748600 GGAAATAAATACTCCCTCCGTTCG 59.251 45.833 0.00 0.00 0.00 3.95
344 345 4.332428 AATAAATACTCCCTCCGTTCGG 57.668 45.455 4.74 4.74 0.00 4.30
345 346 1.856629 AAATACTCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
346 347 1.109609 AATACTCCCTCCGTTCGGAC 58.890 55.000 10.00 0.00 0.00 4.79
347 348 0.258194 ATACTCCCTCCGTTCGGACT 59.742 55.000 10.00 0.00 0.00 3.85
348 349 0.038744 TACTCCCTCCGTTCGGACTT 59.961 55.000 10.00 0.00 0.00 3.01
349 350 0.038744 ACTCCCTCCGTTCGGACTTA 59.961 55.000 10.00 0.00 0.00 2.24
350 351 0.455005 CTCCCTCCGTTCGGACTTAC 59.545 60.000 10.00 0.00 0.00 2.34
351 352 0.038744 TCCCTCCGTTCGGACTTACT 59.961 55.000 10.00 0.00 0.00 2.24
352 353 0.893447 CCCTCCGTTCGGACTTACTT 59.107 55.000 10.00 0.00 0.00 2.24
353 354 1.403780 CCCTCCGTTCGGACTTACTTG 60.404 57.143 10.00 0.00 0.00 3.16
354 355 1.271656 CCTCCGTTCGGACTTACTTGT 59.728 52.381 10.00 0.00 0.00 3.16
355 356 2.325761 CTCCGTTCGGACTTACTTGTG 58.674 52.381 10.00 0.00 0.00 3.33
356 357 1.682854 TCCGTTCGGACTTACTTGTGT 59.317 47.619 10.00 0.00 0.00 3.72
357 358 2.056577 CCGTTCGGACTTACTTGTGTC 58.943 52.381 5.19 0.00 0.00 3.67
358 359 2.544277 CCGTTCGGACTTACTTGTGTCA 60.544 50.000 5.19 0.00 35.11 3.58
359 360 2.724690 CGTTCGGACTTACTTGTGTCAG 59.275 50.000 0.00 0.00 35.11 3.51
360 361 3.549423 CGTTCGGACTTACTTGTGTCAGA 60.549 47.826 0.00 0.00 36.08 3.27
361 362 4.557205 GTTCGGACTTACTTGTGTCAGAT 58.443 43.478 0.00 0.00 37.28 2.90
362 363 5.618418 CGTTCGGACTTACTTGTGTCAGATA 60.618 44.000 0.00 0.00 37.28 1.98
363 364 6.331061 GTTCGGACTTACTTGTGTCAGATAT 58.669 40.000 0.00 0.00 37.28 1.63
364 365 5.891451 TCGGACTTACTTGTGTCAGATATG 58.109 41.667 0.00 0.00 33.77 1.78
365 366 5.043903 CGGACTTACTTGTGTCAGATATGG 58.956 45.833 0.00 0.00 35.11 2.74
366 367 5.163550 CGGACTTACTTGTGTCAGATATGGA 60.164 44.000 0.00 0.00 35.11 3.41
367 368 6.461648 CGGACTTACTTGTGTCAGATATGGAT 60.462 42.308 0.00 0.00 35.11 3.41
368 369 6.703607 GGACTTACTTGTGTCAGATATGGATG 59.296 42.308 0.00 0.00 35.11 3.51
369 370 7.187824 ACTTACTTGTGTCAGATATGGATGT 57.812 36.000 0.00 0.00 0.00 3.06
370 371 8.306313 ACTTACTTGTGTCAGATATGGATGTA 57.694 34.615 0.00 0.00 0.00 2.29
371 372 8.928448 ACTTACTTGTGTCAGATATGGATGTAT 58.072 33.333 0.00 0.00 0.00 2.29
372 373 9.416794 CTTACTTGTGTCAGATATGGATGTATC 57.583 37.037 0.00 0.00 0.00 2.24
373 374 7.609097 ACTTGTGTCAGATATGGATGTATCT 57.391 36.000 0.00 0.00 41.03 1.98
374 375 8.712228 ACTTGTGTCAGATATGGATGTATCTA 57.288 34.615 0.00 0.00 38.93 1.98
375 376 8.801299 ACTTGTGTCAGATATGGATGTATCTAG 58.199 37.037 0.00 0.00 38.93 2.43
376 377 8.940397 TTGTGTCAGATATGGATGTATCTAGA 57.060 34.615 0.00 0.00 38.93 2.43
377 378 8.940397 TGTGTCAGATATGGATGTATCTAGAA 57.060 34.615 0.00 0.00 38.93 2.10
378 379 8.797438 TGTGTCAGATATGGATGTATCTAGAAC 58.203 37.037 0.00 0.00 38.93 3.01
379 380 9.019656 GTGTCAGATATGGATGTATCTAGAACT 57.980 37.037 0.00 0.00 38.93 3.01
409 410 7.194607 ACATCTAGATACATCCATTTTTGCG 57.805 36.000 4.54 0.00 0.00 4.85
410 411 6.992123 ACATCTAGATACATCCATTTTTGCGA 59.008 34.615 4.54 0.00 0.00 5.10
411 412 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
412 413 6.345298 TCTAGATACATCCATTTTTGCGACA 58.655 36.000 0.00 0.00 0.00 4.35
413 414 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
414 415 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
415 416 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
416 417 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
417 418 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
418 419 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
419 420 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
420 421 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
421 422 6.325919 TCCATTTTTGCGACAAGTAATTCT 57.674 33.333 0.00 0.00 0.00 2.40
422 423 6.148948 TCCATTTTTGCGACAAGTAATTCTG 58.851 36.000 0.00 0.00 0.00 3.02
423 424 6.016693 TCCATTTTTGCGACAAGTAATTCTGA 60.017 34.615 0.00 0.00 0.00 3.27
424 425 6.640499 CCATTTTTGCGACAAGTAATTCTGAA 59.360 34.615 0.00 0.00 0.00 3.02
425 426 7.358352 CCATTTTTGCGACAAGTAATTCTGAAC 60.358 37.037 0.00 0.00 0.00 3.18
426 427 4.383774 TTGCGACAAGTAATTCTGAACG 57.616 40.909 0.00 0.00 0.00 3.95
427 428 2.734606 TGCGACAAGTAATTCTGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
428 429 2.991190 GCGACAAGTAATTCTGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
429 430 3.060895 GCGACAAGTAATTCTGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
430 431 3.612860 CGACAAGTAATTCTGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
431 432 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
432 433 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
433 434 4.184629 CAAGTAATTCTGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
434 435 3.442076 AGTAATTCTGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
439 440 2.100197 TCTGAACGGAGGGAGTATGTG 58.900 52.381 0.00 0.00 0.00 3.21
441 442 1.548719 TGAACGGAGGGAGTATGTGTG 59.451 52.381 0.00 0.00 0.00 3.82
448 449 2.038557 GAGGGAGTATGTGTGTGTGGTT 59.961 50.000 0.00 0.00 0.00 3.67
459 460 1.064003 TGTGTGGTTCCAGCTACCAT 58.936 50.000 10.02 0.00 46.63 3.55
547 583 3.070018 CTGTAGCCAGTTCTGAACTTGG 58.930 50.000 19.89 22.00 40.46 3.61
550 592 1.771255 AGCCAGTTCTGAACTTGGTCT 59.229 47.619 25.74 21.82 40.46 3.85
552 594 2.485479 GCCAGTTCTGAACTTGGTCTGA 60.485 50.000 25.74 0.00 40.46 3.27
553 595 3.808728 CCAGTTCTGAACTTGGTCTGAA 58.191 45.455 19.89 4.28 40.46 3.02
556 598 4.802876 GTTCTGAACTTGGTCTGAACTG 57.197 45.455 22.48 0.00 45.63 3.16
557 599 4.442706 GTTCTGAACTTGGTCTGAACTGA 58.557 43.478 22.48 0.00 45.63 3.41
559 601 3.706594 TCTGAACTTGGTCTGAACTGAGT 59.293 43.478 0.00 0.00 0.00 3.41
562 604 4.081142 TGAACTTGGTCTGAACTGAGTGAA 60.081 41.667 3.67 0.00 0.00 3.18
563 605 4.065321 ACTTGGTCTGAACTGAGTGAAG 57.935 45.455 0.00 0.00 0.00 3.02
565 607 1.762370 TGGTCTGAACTGAGTGAAGCA 59.238 47.619 0.00 0.00 0.00 3.91
566 608 2.224137 TGGTCTGAACTGAGTGAAGCAG 60.224 50.000 0.00 0.00 39.26 4.24
567 609 2.036475 GGTCTGAACTGAGTGAAGCAGA 59.964 50.000 0.00 0.00 36.86 4.26
568 610 3.316283 GTCTGAACTGAGTGAAGCAGAG 58.684 50.000 7.62 0.00 36.86 3.35
569 611 3.005261 GTCTGAACTGAGTGAAGCAGAGA 59.995 47.826 7.62 0.00 36.86 3.10
570 612 3.255395 TCTGAACTGAGTGAAGCAGAGAG 59.745 47.826 0.00 0.00 36.86 3.20
571 613 3.225940 TGAACTGAGTGAAGCAGAGAGA 58.774 45.455 0.00 0.00 36.86 3.10
572 614 3.005261 TGAACTGAGTGAAGCAGAGAGAC 59.995 47.826 0.00 0.00 36.86 3.36
574 616 0.242286 TGAGTGAAGCAGAGAGACGC 59.758 55.000 0.00 0.00 0.00 5.19
576 618 1.081108 GTGAAGCAGAGAGACGCGT 60.081 57.895 13.85 13.85 0.00 6.01
577 619 0.664767 GTGAAGCAGAGAGACGCGTT 60.665 55.000 15.53 2.89 0.00 4.84
578 620 0.032130 TGAAGCAGAGAGACGCGTTT 59.968 50.000 15.53 7.97 0.00 3.60
582 624 0.367210 GCAGAGAGACGCGTTTTAGC 59.633 55.000 15.53 9.90 0.00 3.09
585 627 1.813786 AGAGAGACGCGTTTTAGCTCT 59.186 47.619 22.78 22.78 38.55 4.09
586 628 2.178783 GAGAGACGCGTTTTAGCTCTC 58.821 52.381 28.20 28.20 43.09 3.20
590 632 1.993370 GACGCGTTTTAGCTCTCATGT 59.007 47.619 15.53 0.00 34.40 3.21
592 634 3.581755 ACGCGTTTTAGCTCTCATGTTA 58.418 40.909 5.58 0.00 34.40 2.41
593 635 3.612860 ACGCGTTTTAGCTCTCATGTTAG 59.387 43.478 5.58 0.00 34.40 2.34
595 637 4.259451 CGCGTTTTAGCTCTCATGTTAGAC 60.259 45.833 0.00 0.00 34.40 2.59
596 638 4.625742 GCGTTTTAGCTCTCATGTTAGACA 59.374 41.667 0.00 0.00 0.00 3.41
597 639 5.120208 GCGTTTTAGCTCTCATGTTAGACAA 59.880 40.000 0.00 0.00 0.00 3.18
598 640 6.526222 CGTTTTAGCTCTCATGTTAGACAAC 58.474 40.000 0.00 0.00 35.06 3.32
599 641 6.366332 CGTTTTAGCTCTCATGTTAGACAACT 59.634 38.462 0.00 0.00 35.56 3.16
600 642 7.095607 CGTTTTAGCTCTCATGTTAGACAACTT 60.096 37.037 0.00 0.00 35.56 2.66
601 643 7.658179 TTTAGCTCTCATGTTAGACAACTTG 57.342 36.000 0.00 0.00 39.81 3.16
602 644 4.573900 AGCTCTCATGTTAGACAACTTGG 58.426 43.478 0.00 0.00 39.25 3.61
603 645 4.040952 AGCTCTCATGTTAGACAACTTGGT 59.959 41.667 0.00 0.00 39.25 3.67
606 648 5.784177 TCTCATGTTAGACAACTTGGTCTC 58.216 41.667 0.00 0.00 44.63 3.36
607 649 5.304357 TCTCATGTTAGACAACTTGGTCTCA 59.696 40.000 0.00 0.00 44.63 3.27
608 650 5.541845 TCATGTTAGACAACTTGGTCTCAG 58.458 41.667 0.00 0.00 44.63 3.35
609 651 5.304357 TCATGTTAGACAACTTGGTCTCAGA 59.696 40.000 0.00 0.00 44.63 3.27
610 652 4.945246 TGTTAGACAACTTGGTCTCAGAC 58.055 43.478 0.00 0.00 44.63 3.51
611 653 4.649674 TGTTAGACAACTTGGTCTCAGACT 59.350 41.667 4.40 0.00 44.63 3.24
613 655 2.294791 AGACAACTTGGTCTCAGACTCG 59.705 50.000 4.40 0.00 44.63 4.18
614 656 1.341531 ACAACTTGGTCTCAGACTCGG 59.658 52.381 4.40 0.00 32.47 4.63
615 657 1.613925 CAACTTGGTCTCAGACTCGGA 59.386 52.381 4.40 0.00 32.47 4.55
616 658 2.223803 ACTTGGTCTCAGACTCGGAT 57.776 50.000 4.40 0.00 32.47 4.18
617 659 2.530701 ACTTGGTCTCAGACTCGGATT 58.469 47.619 4.40 0.00 32.47 3.01
618 660 2.900546 ACTTGGTCTCAGACTCGGATTT 59.099 45.455 4.40 0.00 32.47 2.17
620 662 4.158764 ACTTGGTCTCAGACTCGGATTTAG 59.841 45.833 4.40 0.00 32.47 1.85
621 663 3.964411 TGGTCTCAGACTCGGATTTAGA 58.036 45.455 4.40 0.00 32.47 2.10
622 664 4.341487 TGGTCTCAGACTCGGATTTAGAA 58.659 43.478 4.40 0.00 32.47 2.10
624 666 5.103687 GGTCTCAGACTCGGATTTAGAAAC 58.896 45.833 4.40 0.00 32.47 2.78
625 667 4.794246 GTCTCAGACTCGGATTTAGAAACG 59.206 45.833 0.00 0.00 0.00 3.60
627 669 5.182570 TCTCAGACTCGGATTTAGAAACGAA 59.817 40.000 0.00 0.00 34.70 3.85
628 670 5.775686 TCAGACTCGGATTTAGAAACGAAA 58.224 37.500 0.00 0.00 34.70 3.46
641 683 2.672414 ACGAAAGTCTGCCTAGGCT 58.328 52.632 33.07 13.23 44.19 4.58
642 684 0.247736 ACGAAAGTCTGCCTAGGCTG 59.752 55.000 33.07 31.23 44.19 4.85
647 689 3.926003 TCTGCCTAGGCTGACTCG 58.074 61.111 32.73 15.67 42.61 4.18
648 690 1.754621 TCTGCCTAGGCTGACTCGG 60.755 63.158 32.73 15.34 42.61 4.63
652 694 0.032815 GCCTAGGCTGACTCGGAATC 59.967 60.000 27.17 0.00 33.97 2.52
655 697 2.168521 CCTAGGCTGACTCGGAATCAAA 59.831 50.000 0.00 0.00 33.97 2.69
658 700 3.012518 AGGCTGACTCGGAATCAAATTG 58.987 45.455 0.00 0.00 0.00 2.32
660 702 2.421424 GCTGACTCGGAATCAAATTGCT 59.579 45.455 0.00 0.00 0.00 3.91
665 1375 1.135431 TCGGAATCAAATTGCTTGCCG 60.135 47.619 8.34 8.34 38.70 5.69
667 1377 1.001624 GAATCAAATTGCTTGCCGCC 58.998 50.000 0.00 0.00 38.05 6.13
669 1379 0.390209 ATCAAATTGCTTGCCGCCAC 60.390 50.000 0.00 0.00 38.05 5.01
670 1380 1.005867 CAAATTGCTTGCCGCCACT 60.006 52.632 0.00 0.00 38.05 4.00
680 1390 0.320771 TGCCGCCACTTCTCTTTCTC 60.321 55.000 0.00 0.00 0.00 2.87
681 1391 1.021920 GCCGCCACTTCTCTTTCTCC 61.022 60.000 0.00 0.00 0.00 3.71
682 1392 0.391793 CCGCCACTTCTCTTTCTCCC 60.392 60.000 0.00 0.00 0.00 4.30
683 1393 0.737715 CGCCACTTCTCTTTCTCCCG 60.738 60.000 0.00 0.00 0.00 5.14
684 1394 1.021920 GCCACTTCTCTTTCTCCCGC 61.022 60.000 0.00 0.00 0.00 6.13
685 1395 0.737715 CCACTTCTCTTTCTCCCGCG 60.738 60.000 0.00 0.00 0.00 6.46
688 1398 0.458716 CTTCTCTTTCTCCCGCGTCC 60.459 60.000 4.92 0.00 0.00 4.79
690 1400 0.898789 TCTCTTTCTCCCGCGTCCTT 60.899 55.000 4.92 0.00 0.00 3.36
692 1402 1.203994 CTCTTTCTCCCGCGTCCTTTA 59.796 52.381 4.92 0.00 0.00 1.85
693 1403 1.829222 TCTTTCTCCCGCGTCCTTTAT 59.171 47.619 4.92 0.00 0.00 1.40
695 1405 2.773993 TTCTCCCGCGTCCTTTATTT 57.226 45.000 4.92 0.00 0.00 1.40
697 1407 2.624636 TCTCCCGCGTCCTTTATTTTC 58.375 47.619 4.92 0.00 0.00 2.29
699 1409 3.007635 CTCCCGCGTCCTTTATTTTCTT 58.992 45.455 4.92 0.00 0.00 2.52
700 1410 2.745281 TCCCGCGTCCTTTATTTTCTTG 59.255 45.455 4.92 0.00 0.00 3.02
701 1411 2.515912 CCGCGTCCTTTATTTTCTTGC 58.484 47.619 4.92 0.00 0.00 4.01
702 1412 2.161609 CCGCGTCCTTTATTTTCTTGCT 59.838 45.455 4.92 0.00 0.00 3.91
721 2465 1.132262 CTCCTGAAGCAGAGAGACGTC 59.868 57.143 7.70 7.70 33.66 4.34
725 2469 0.796491 GAAGCAGAGAGACGTCAGCG 60.796 60.000 19.50 2.23 44.93 5.18
737 2481 4.357947 TCAGCGGCGACACCTGTC 62.358 66.667 12.98 0.00 41.47 3.51
765 2760 1.850640 CGTGCGCGTTAGACAACTT 59.149 52.632 12.43 0.00 32.09 2.66
766 2761 0.448861 CGTGCGCGTTAGACAACTTG 60.449 55.000 12.43 0.00 32.09 3.16
767 2762 0.110823 GTGCGCGTTAGACAACTTGG 60.111 55.000 8.43 0.00 32.09 3.61
772 2772 2.096909 CGCGTTAGACAACTTGGTCTTG 60.097 50.000 0.00 0.00 45.59 3.02
785 2785 1.550524 TGGTCTTGGACTCGGATTCAG 59.449 52.381 0.00 0.00 32.47 3.02
794 2797 3.123116 GGACTCGGATTCAGAAACGAAAC 59.877 47.826 12.62 9.77 34.70 2.78
817 2828 0.316196 GCGTTTTAGCTATGCCTGCG 60.316 55.000 0.00 0.00 35.28 5.18
818 2829 0.316196 CGTTTTAGCTATGCCTGCGC 60.316 55.000 0.00 0.00 35.28 6.09
846 2894 1.204467 GATTCAAATTGCTTCCCGCCA 59.796 47.619 0.00 0.00 38.05 5.69
852 2900 3.860930 TTGCTTCCCGCCACTTCCC 62.861 63.158 0.00 0.00 38.05 3.97
853 2901 4.035102 GCTTCCCGCCACTTCCCT 62.035 66.667 0.00 0.00 0.00 4.20
858 2906 2.266055 CCGCCACTTCCCTGTCTC 59.734 66.667 0.00 0.00 0.00 3.36
859 2907 2.266055 CGCCACTTCCCTGTCTCC 59.734 66.667 0.00 0.00 0.00 3.71
860 2908 2.671682 GCCACTTCCCTGTCTCCC 59.328 66.667 0.00 0.00 0.00 4.30
861 2909 2.982130 CCACTTCCCTGTCTCCCG 59.018 66.667 0.00 0.00 0.00 5.14
862 2910 2.266055 CACTTCCCTGTCTCCCGC 59.734 66.667 0.00 0.00 0.00 6.13
863 2911 2.203788 ACTTCCCTGTCTCCCGCA 60.204 61.111 0.00 0.00 0.00 5.69
864 2912 1.613630 ACTTCCCTGTCTCCCGCAT 60.614 57.895 0.00 0.00 0.00 4.73
865 2913 1.144936 CTTCCCTGTCTCCCGCATC 59.855 63.158 0.00 0.00 0.00 3.91
866 2914 2.317149 CTTCCCTGTCTCCCGCATCC 62.317 65.000 0.00 0.00 0.00 3.51
867 2915 2.765807 CCCTGTCTCCCGCATCCT 60.766 66.667 0.00 0.00 0.00 3.24
892 2956 3.414700 CTTGCTCGCCGCGTTTCT 61.415 61.111 13.39 0.00 43.27 2.52
979 3074 1.509463 ACGCCGAATCGTTGCTCTA 59.491 52.632 0.82 0.00 40.07 2.43
1362 3480 2.124570 AAGCCGCCGATCAGCATT 60.125 55.556 1.15 0.00 0.00 3.56
1515 7838 1.227853 GGTGCAGTTCAACGACCCT 60.228 57.895 0.00 0.00 0.00 4.34
1692 8029 3.693085 GCAGAGGAAGAAATCATCAGCAA 59.307 43.478 3.21 0.00 46.67 3.91
1869 8302 2.699954 AGGTTCTGCACTTAATCACCG 58.300 47.619 0.00 0.00 0.00 4.94
1894 8328 7.201565 CGAGATTTCTAGTGTTCTTTCAATCCC 60.202 40.741 0.00 0.00 0.00 3.85
2326 9554 4.035208 AGTTAAAGTTGCAGTTTCTGACGG 59.965 41.667 0.66 0.00 32.44 4.79
2551 9846 9.965902 ATCCTCCTATTAACATTACCATGAATC 57.034 33.333 0.00 0.00 34.11 2.52
2554 9849 8.601845 TCCTATTAACATTACCATGAATCGTG 57.398 34.615 0.00 0.00 34.11 4.35
2560 9855 4.094887 ACATTACCATGAATCGTGACAAGC 59.905 41.667 3.65 0.00 34.11 4.01
2561 9856 2.183478 ACCATGAATCGTGACAAGCA 57.817 45.000 3.65 0.00 0.00 3.91
2562 9857 1.806542 ACCATGAATCGTGACAAGCAC 59.193 47.619 3.65 0.00 44.21 4.40
2563 9858 8.266008 CATTACCATGAATCGTGACAAGCACA 62.266 42.308 3.65 0.00 38.92 4.57
2579 10315 2.290641 AGCACACGATTTGACCAAGAAC 59.709 45.455 0.00 0.00 0.00 3.01
2610 10349 8.786826 TTTTGTGACTAGTATATTCCAAGTGG 57.213 34.615 0.00 0.00 0.00 4.00
2633 10375 4.323104 GCTGTATTTCAGGAGAGGAACAGT 60.323 45.833 0.00 0.00 43.78 3.55
2637 10379 7.918076 TGTATTTCAGGAGAGGAACAGTTATT 58.082 34.615 0.00 0.00 0.00 1.40
2704 10660 1.872952 GTGCCAAAAAGCATGTTTCCC 59.127 47.619 0.00 0.00 46.24 3.97
2706 10662 1.794512 CCAAAAAGCATGTTTCCCGG 58.205 50.000 0.00 0.00 0.00 5.73
2739 10695 3.156293 TGCATCATTGTTACCAACAGCT 58.844 40.909 0.00 0.00 43.27 4.24
2741 10697 3.191162 GCATCATTGTTACCAACAGCTCA 59.809 43.478 0.00 0.00 43.27 4.26
2742 10698 4.142315 GCATCATTGTTACCAACAGCTCAT 60.142 41.667 0.00 0.00 43.27 2.90
2744 10700 4.397420 TCATTGTTACCAACAGCTCATGT 58.603 39.130 0.00 0.00 46.97 3.21
2746 10702 3.207265 TGTTACCAACAGCTCATGTGT 57.793 42.857 0.00 0.00 43.00 3.72
2748 10704 4.062293 TGTTACCAACAGCTCATGTGTAC 58.938 43.478 0.00 0.00 43.00 2.90
2749 10705 4.202315 TGTTACCAACAGCTCATGTGTACT 60.202 41.667 0.00 0.00 43.00 2.73
2800 10763 4.314740 TTTGGTTCAGTACAATTGGTGC 57.685 40.909 10.83 0.00 0.00 5.01
2823 10786 1.608055 TGCCAGACCAGTTTCATGTG 58.392 50.000 0.00 0.00 0.00 3.21
2851 10826 3.792401 CAGATACTTGACGGCAATGGTA 58.208 45.455 2.94 4.62 32.68 3.25
2858 10833 5.007682 ACTTGACGGCAATGGTATTTACTT 58.992 37.500 2.94 0.00 32.68 2.24
2897 10872 2.408271 TTGACATGGATCCACTGAGC 57.592 50.000 18.99 13.54 0.00 4.26
2901 10876 3.118629 TGACATGGATCCACTGAGCTAAC 60.119 47.826 18.99 2.21 0.00 2.34
2902 10877 2.840038 ACATGGATCCACTGAGCTAACA 59.160 45.455 18.99 0.00 0.00 2.41
2903 10878 3.457380 ACATGGATCCACTGAGCTAACAT 59.543 43.478 18.99 0.00 0.00 2.71
2904 10879 4.655649 ACATGGATCCACTGAGCTAACATA 59.344 41.667 18.99 0.00 0.00 2.29
2905 10880 5.309020 ACATGGATCCACTGAGCTAACATAT 59.691 40.000 18.99 0.00 0.00 1.78
2906 10881 5.894298 TGGATCCACTGAGCTAACATATT 57.106 39.130 11.44 0.00 0.00 1.28
2907 10882 5.858381 TGGATCCACTGAGCTAACATATTC 58.142 41.667 11.44 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.706270 AGTACTCACTGTCAAAAGGTTACATG 59.294 38.462 0.00 0.00 32.25 3.21
1 2 6.827727 AGTACTCACTGTCAAAAGGTTACAT 58.172 36.000 0.00 0.00 32.25 2.29
5 6 4.409247 AGGAGTACTCACTGTCAAAAGGTT 59.591 41.667 23.91 0.00 34.21 3.50
7 8 4.608948 AGGAGTACTCACTGTCAAAAGG 57.391 45.455 23.91 0.00 34.21 3.11
8 9 5.463724 GTCAAGGAGTACTCACTGTCAAAAG 59.536 44.000 23.91 2.53 34.21 2.27
11 12 3.958147 TGTCAAGGAGTACTCACTGTCAA 59.042 43.478 23.91 7.89 34.21 3.18
12 13 3.562182 TGTCAAGGAGTACTCACTGTCA 58.438 45.455 23.91 18.53 34.21 3.58
13 14 4.792521 ATGTCAAGGAGTACTCACTGTC 57.207 45.455 23.91 16.50 34.21 3.51
14 15 6.859112 ATAATGTCAAGGAGTACTCACTGT 57.141 37.500 23.91 8.30 34.21 3.55
15 16 7.702772 GTGTATAATGTCAAGGAGTACTCACTG 59.297 40.741 23.91 18.59 34.21 3.66
16 17 7.616150 AGTGTATAATGTCAAGGAGTACTCACT 59.384 37.037 23.91 15.22 37.87 3.41
17 18 7.773149 AGTGTATAATGTCAAGGAGTACTCAC 58.227 38.462 23.91 13.73 0.00 3.51
18 19 7.956328 AGTGTATAATGTCAAGGAGTACTCA 57.044 36.000 23.91 3.64 0.00 3.41
19 20 7.222999 GCAAGTGTATAATGTCAAGGAGTACTC 59.777 40.741 14.87 14.87 0.00 2.59
21 22 6.258068 GGCAAGTGTATAATGTCAAGGAGTAC 59.742 42.308 0.00 0.00 0.00 2.73
22 23 6.070481 TGGCAAGTGTATAATGTCAAGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
24 25 5.065218 GTGGCAAGTGTATAATGTCAAGGAG 59.935 44.000 0.00 0.00 29.32 3.69
25 26 4.941263 GTGGCAAGTGTATAATGTCAAGGA 59.059 41.667 0.00 0.00 29.32 3.36
26 27 4.096382 GGTGGCAAGTGTATAATGTCAAGG 59.904 45.833 0.00 0.00 29.32 3.61
27 28 4.699735 TGGTGGCAAGTGTATAATGTCAAG 59.300 41.667 0.00 0.00 29.32 3.02
28 29 4.657013 TGGTGGCAAGTGTATAATGTCAA 58.343 39.130 0.00 0.00 29.32 3.18
29 30 4.293662 TGGTGGCAAGTGTATAATGTCA 57.706 40.909 0.00 0.00 0.00 3.58
30 31 4.700213 ACTTGGTGGCAAGTGTATAATGTC 59.300 41.667 0.00 0.00 43.08 3.06
31 32 4.662278 ACTTGGTGGCAAGTGTATAATGT 58.338 39.130 0.00 0.00 43.08 2.71
33 34 5.321102 TGAACTTGGTGGCAAGTGTATAAT 58.679 37.500 0.00 0.00 43.83 1.28
34 35 4.720046 TGAACTTGGTGGCAAGTGTATAA 58.280 39.130 0.00 0.00 43.83 0.98
35 36 4.202419 ACTGAACTTGGTGGCAAGTGTATA 60.202 41.667 0.00 0.00 43.83 1.47
37 38 2.092646 ACTGAACTTGGTGGCAAGTGTA 60.093 45.455 0.00 0.00 43.83 2.90
39 40 1.392589 ACTGAACTTGGTGGCAAGTG 58.607 50.000 0.00 0.00 43.83 3.16
40 41 2.143876 AACTGAACTTGGTGGCAAGT 57.856 45.000 0.00 0.00 46.26 3.16
43 44 1.748493 GTCAAACTGAACTTGGTGGCA 59.252 47.619 0.00 0.00 0.00 4.92
44 45 2.024414 AGTCAAACTGAACTTGGTGGC 58.976 47.619 0.00 0.00 0.00 5.01
45 46 3.545703 AGAGTCAAACTGAACTTGGTGG 58.454 45.455 0.00 0.00 0.00 4.61
46 47 4.446371 AGAGAGTCAAACTGAACTTGGTG 58.554 43.478 0.00 0.00 0.00 4.17
47 48 4.762289 AGAGAGTCAAACTGAACTTGGT 57.238 40.909 0.00 0.00 0.00 3.67
48 49 4.513318 GGAAGAGAGTCAAACTGAACTTGG 59.487 45.833 0.00 0.00 0.00 3.61
49 50 5.363939 AGGAAGAGAGTCAAACTGAACTTG 58.636 41.667 0.00 0.00 0.00 3.16
50 51 5.622346 AGGAAGAGAGTCAAACTGAACTT 57.378 39.130 0.00 0.00 0.00 2.66
51 52 5.279256 GCTAGGAAGAGAGTCAAACTGAACT 60.279 44.000 0.00 0.00 0.00 3.01
52 53 4.926832 GCTAGGAAGAGAGTCAAACTGAAC 59.073 45.833 0.00 0.00 0.00 3.18
53 54 4.835615 AGCTAGGAAGAGAGTCAAACTGAA 59.164 41.667 0.00 0.00 0.00 3.02
55 56 4.462483 AGAGCTAGGAAGAGAGTCAAACTG 59.538 45.833 0.00 0.00 0.00 3.16
56 57 4.672899 AGAGCTAGGAAGAGAGTCAAACT 58.327 43.478 0.00 0.00 0.00 2.66
57 58 5.400066 AAGAGCTAGGAAGAGAGTCAAAC 57.600 43.478 0.00 0.00 0.00 2.93
58 59 5.540337 TGAAAGAGCTAGGAAGAGAGTCAAA 59.460 40.000 0.00 0.00 0.00 2.69
62 63 6.431722 ACTATGAAAGAGCTAGGAAGAGAGT 58.568 40.000 0.00 0.00 0.00 3.24
63 64 6.545666 TGACTATGAAAGAGCTAGGAAGAGAG 59.454 42.308 0.00 0.00 0.00 3.20
64 65 6.320164 GTGACTATGAAAGAGCTAGGAAGAGA 59.680 42.308 0.00 0.00 0.00 3.10
65 66 6.321181 AGTGACTATGAAAGAGCTAGGAAGAG 59.679 42.308 0.00 0.00 0.00 2.85
66 67 6.191315 AGTGACTATGAAAGAGCTAGGAAGA 58.809 40.000 0.00 0.00 0.00 2.87
67 68 6.463995 AGTGACTATGAAAGAGCTAGGAAG 57.536 41.667 0.00 0.00 0.00 3.46
68 69 6.859112 AAGTGACTATGAAAGAGCTAGGAA 57.141 37.500 0.00 0.00 0.00 3.36
70 71 7.341445 ACTAAGTGACTATGAAAGAGCTAGG 57.659 40.000 0.00 0.00 0.00 3.02
71 72 9.944663 CTTACTAAGTGACTATGAAAGAGCTAG 57.055 37.037 0.00 0.00 0.00 3.42
74 75 7.703197 GTCCTTACTAAGTGACTATGAAAGAGC 59.297 40.741 0.00 0.00 0.00 4.09
75 76 8.740906 TGTCCTTACTAAGTGACTATGAAAGAG 58.259 37.037 13.90 0.00 32.99 2.85
77 78 8.304596 TGTGTCCTTACTAAGTGACTATGAAAG 58.695 37.037 13.90 0.00 32.99 2.62
78 79 8.185506 TGTGTCCTTACTAAGTGACTATGAAA 57.814 34.615 13.90 0.00 32.99 2.69
79 80 7.770366 TGTGTCCTTACTAAGTGACTATGAA 57.230 36.000 13.90 0.00 32.99 2.57
80 81 7.770366 TTGTGTCCTTACTAAGTGACTATGA 57.230 36.000 13.90 0.00 32.99 2.15
81 82 9.436957 AAATTGTGTCCTTACTAAGTGACTATG 57.563 33.333 13.90 0.00 32.99 2.23
82 83 9.654663 GAAATTGTGTCCTTACTAAGTGACTAT 57.345 33.333 13.90 6.67 32.99 2.12
83 84 8.867097 AGAAATTGTGTCCTTACTAAGTGACTA 58.133 33.333 13.90 5.63 32.99 2.59
84 85 7.657761 CAGAAATTGTGTCCTTACTAAGTGACT 59.342 37.037 13.90 0.00 32.99 3.41
85 86 7.571428 GCAGAAATTGTGTCCTTACTAAGTGAC 60.571 40.741 9.08 9.08 32.65 3.67
86 87 6.426937 GCAGAAATTGTGTCCTTACTAAGTGA 59.573 38.462 0.00 0.00 0.00 3.41
87 88 6.603095 GCAGAAATTGTGTCCTTACTAAGTG 58.397 40.000 0.00 0.00 0.00 3.16
89 90 5.858475 CGCAGAAATTGTGTCCTTACTAAG 58.142 41.667 0.00 0.00 32.55 2.18
90 91 5.856126 CGCAGAAATTGTGTCCTTACTAA 57.144 39.130 0.00 0.00 32.55 2.24
93 94 7.491161 AAGCACGCAGAAATTGTGTCCTTAC 62.491 44.000 0.00 0.00 44.40 2.34
100 101 2.287188 ACAGAAGCACGCAGAAATTGTG 60.287 45.455 0.00 0.00 43.06 3.33
101 102 1.949525 ACAGAAGCACGCAGAAATTGT 59.050 42.857 0.00 0.00 0.00 2.71
103 104 4.829064 TTTACAGAAGCACGCAGAAATT 57.171 36.364 0.00 0.00 0.00 1.82
104 105 4.829064 TTTTACAGAAGCACGCAGAAAT 57.171 36.364 0.00 0.00 0.00 2.17
105 106 4.536065 CATTTTACAGAAGCACGCAGAAA 58.464 39.130 0.00 0.00 0.00 2.52
106 107 3.058293 CCATTTTACAGAAGCACGCAGAA 60.058 43.478 0.00 0.00 0.00 3.02
108 109 2.855180 CCATTTTACAGAAGCACGCAG 58.145 47.619 0.00 0.00 0.00 5.18
110 111 1.068610 TGCCATTTTACAGAAGCACGC 60.069 47.619 0.00 0.00 0.00 5.34
111 112 2.483877 TCTGCCATTTTACAGAAGCACG 59.516 45.455 0.00 0.00 39.89 5.34
112 113 3.119708 CCTCTGCCATTTTACAGAAGCAC 60.120 47.826 0.00 0.00 42.12 4.40
113 114 3.084039 CCTCTGCCATTTTACAGAAGCA 58.916 45.455 0.00 0.00 42.12 3.91
114 115 2.424956 CCCTCTGCCATTTTACAGAAGC 59.575 50.000 0.00 0.00 42.12 3.86
117 118 2.290896 CCACCCTCTGCCATTTTACAGA 60.291 50.000 0.00 0.00 40.54 3.41
121 122 1.080638 ACCCACCCTCTGCCATTTTA 58.919 50.000 0.00 0.00 0.00 1.52
125 126 1.229820 TGTACCCACCCTCTGCCAT 60.230 57.895 0.00 0.00 0.00 4.40
127 128 2.669240 GTGTACCCACCCTCTGCC 59.331 66.667 0.00 0.00 35.44 4.85
128 129 1.823169 TTCGTGTACCCACCCTCTGC 61.823 60.000 0.00 0.00 38.41 4.26
129 130 0.902531 ATTCGTGTACCCACCCTCTG 59.097 55.000 0.00 0.00 38.41 3.35
130 131 1.192428 GATTCGTGTACCCACCCTCT 58.808 55.000 0.00 0.00 38.41 3.69
131 132 0.899720 TGATTCGTGTACCCACCCTC 59.100 55.000 0.00 0.00 38.41 4.30
132 133 0.902531 CTGATTCGTGTACCCACCCT 59.097 55.000 0.00 0.00 38.41 4.34
133 134 0.611714 ACTGATTCGTGTACCCACCC 59.388 55.000 0.00 0.00 38.41 4.61
135 136 2.073816 CCAACTGATTCGTGTACCCAC 58.926 52.381 0.00 0.00 38.27 4.61
136 137 1.972075 TCCAACTGATTCGTGTACCCA 59.028 47.619 0.00 0.00 0.00 4.51
137 138 2.754946 TCCAACTGATTCGTGTACCC 57.245 50.000 0.00 0.00 0.00 3.69
138 139 5.427036 TTTTTCCAACTGATTCGTGTACC 57.573 39.130 0.00 0.00 0.00 3.34
167 168 9.298250 ACTAGAGTACAGTTTCATGTCTAAAGA 57.702 33.333 0.00 0.00 34.56 2.52
168 169 9.347934 CACTAGAGTACAGTTTCATGTCTAAAG 57.652 37.037 0.00 0.00 34.56 1.85
169 170 9.074576 TCACTAGAGTACAGTTTCATGTCTAAA 57.925 33.333 0.00 0.00 34.56 1.85
170 171 8.631480 TCACTAGAGTACAGTTTCATGTCTAA 57.369 34.615 0.00 0.00 34.56 2.10
171 172 7.148222 GCTCACTAGAGTACAGTTTCATGTCTA 60.148 40.741 0.00 0.00 44.00 2.59
173 174 5.802956 GCTCACTAGAGTACAGTTTCATGTC 59.197 44.000 0.00 0.00 44.00 3.06
174 175 5.478679 AGCTCACTAGAGTACAGTTTCATGT 59.521 40.000 0.00 0.00 44.00 3.21
175 176 5.960113 AGCTCACTAGAGTACAGTTTCATG 58.040 41.667 0.00 0.00 44.00 3.07
176 177 5.126384 GGAGCTCACTAGAGTACAGTTTCAT 59.874 44.000 17.19 0.00 44.00 2.57
177 178 4.459685 GGAGCTCACTAGAGTACAGTTTCA 59.540 45.833 17.19 0.00 44.00 2.69
182 183 4.461081 ACTTTGGAGCTCACTAGAGTACAG 59.539 45.833 17.19 0.00 44.00 2.74
183 184 4.218635 CACTTTGGAGCTCACTAGAGTACA 59.781 45.833 17.19 0.00 44.00 2.90
184 185 4.218852 ACACTTTGGAGCTCACTAGAGTAC 59.781 45.833 17.19 0.00 44.00 2.73
185 186 4.408276 ACACTTTGGAGCTCACTAGAGTA 58.592 43.478 17.19 0.00 44.00 2.59
186 187 3.235200 ACACTTTGGAGCTCACTAGAGT 58.765 45.455 17.19 10.25 44.00 3.24
188 189 5.538813 TCTTTACACTTTGGAGCTCACTAGA 59.461 40.000 17.19 0.60 0.00 2.43
189 190 5.784177 TCTTTACACTTTGGAGCTCACTAG 58.216 41.667 17.19 11.00 0.00 2.57
192 193 5.527582 TCTTTCTTTACACTTTGGAGCTCAC 59.472 40.000 17.19 5.63 0.00 3.51
194 195 5.527582 TGTCTTTCTTTACACTTTGGAGCTC 59.472 40.000 4.71 4.71 0.00 4.09
195 196 5.437060 TGTCTTTCTTTACACTTTGGAGCT 58.563 37.500 0.00 0.00 0.00 4.09
196 197 5.297029 ACTGTCTTTCTTTACACTTTGGAGC 59.703 40.000 0.00 0.00 0.00 4.70
197 198 6.538742 TGACTGTCTTTCTTTACACTTTGGAG 59.461 38.462 9.51 0.00 0.00 3.86
198 199 6.411376 TGACTGTCTTTCTTTACACTTTGGA 58.589 36.000 9.51 0.00 0.00 3.53
199 200 6.238484 CCTGACTGTCTTTCTTTACACTTTGG 60.238 42.308 9.51 0.00 0.00 3.28
200 201 6.316390 ACCTGACTGTCTTTCTTTACACTTTG 59.684 38.462 9.51 0.00 0.00 2.77
203 204 5.615925 ACCTGACTGTCTTTCTTTACACT 57.384 39.130 9.51 0.00 0.00 3.55
205 206 8.418597 ACTATACCTGACTGTCTTTCTTTACA 57.581 34.615 9.51 0.00 0.00 2.41
207 208 8.684520 GCTACTATACCTGACTGTCTTTCTTTA 58.315 37.037 9.51 0.00 0.00 1.85
208 209 7.178628 TGCTACTATACCTGACTGTCTTTCTTT 59.821 37.037 9.51 0.00 0.00 2.52
209 210 6.663953 TGCTACTATACCTGACTGTCTTTCTT 59.336 38.462 9.51 0.00 0.00 2.52
210 211 6.188407 TGCTACTATACCTGACTGTCTTTCT 58.812 40.000 9.51 0.00 0.00 2.52
211 212 6.452494 TGCTACTATACCTGACTGTCTTTC 57.548 41.667 9.51 0.00 0.00 2.62
212 213 6.852420 TTGCTACTATACCTGACTGTCTTT 57.148 37.500 9.51 0.00 0.00 2.52
213 214 6.127310 CCTTTGCTACTATACCTGACTGTCTT 60.127 42.308 9.51 0.00 0.00 3.01
215 216 5.593010 CCTTTGCTACTATACCTGACTGTC 58.407 45.833 0.00 0.00 0.00 3.51
217 218 4.141937 TGCCTTTGCTACTATACCTGACTG 60.142 45.833 0.00 0.00 38.71 3.51
218 219 4.030913 TGCCTTTGCTACTATACCTGACT 58.969 43.478 0.00 0.00 38.71 3.41
219 220 4.120589 GTGCCTTTGCTACTATACCTGAC 58.879 47.826 0.00 0.00 38.71 3.51
220 221 3.772572 TGTGCCTTTGCTACTATACCTGA 59.227 43.478 0.00 0.00 38.71 3.86
221 222 4.137116 TGTGCCTTTGCTACTATACCTG 57.863 45.455 0.00 0.00 38.71 4.00
222 223 5.126067 CAATGTGCCTTTGCTACTATACCT 58.874 41.667 0.00 0.00 38.71 3.08
223 224 4.881850 ACAATGTGCCTTTGCTACTATACC 59.118 41.667 0.00 0.00 38.71 2.73
224 225 5.584649 TCACAATGTGCCTTTGCTACTATAC 59.415 40.000 8.78 0.00 38.71 1.47
225 226 5.739959 TCACAATGTGCCTTTGCTACTATA 58.260 37.500 8.78 0.00 38.71 1.31
226 227 4.588899 TCACAATGTGCCTTTGCTACTAT 58.411 39.130 8.78 0.00 38.71 2.12
227 228 4.002982 CTCACAATGTGCCTTTGCTACTA 58.997 43.478 8.78 0.00 38.71 1.82
228 229 2.816087 CTCACAATGTGCCTTTGCTACT 59.184 45.455 8.78 0.00 38.71 2.57
229 230 2.554032 ACTCACAATGTGCCTTTGCTAC 59.446 45.455 8.78 0.00 38.71 3.58
231 232 1.696063 ACTCACAATGTGCCTTTGCT 58.304 45.000 8.78 0.00 38.71 3.91
232 233 3.568538 CTTACTCACAATGTGCCTTTGC 58.431 45.455 8.78 0.00 32.98 3.68
233 234 3.820467 TCCTTACTCACAATGTGCCTTTG 59.180 43.478 8.78 0.00 32.98 2.77
234 235 4.098914 TCCTTACTCACAATGTGCCTTT 57.901 40.909 8.78 0.00 32.98 3.11
235 236 3.788227 TCCTTACTCACAATGTGCCTT 57.212 42.857 8.78 0.00 32.98 4.35
236 237 4.307032 AATCCTTACTCACAATGTGCCT 57.693 40.909 8.78 0.00 32.98 4.75
237 238 5.009010 CCATAATCCTTACTCACAATGTGCC 59.991 44.000 8.78 0.00 32.98 5.01
238 239 5.009010 CCCATAATCCTTACTCACAATGTGC 59.991 44.000 8.78 0.00 32.98 4.57
239 240 5.009010 GCCCATAATCCTTACTCACAATGTG 59.991 44.000 7.12 7.12 34.45 3.21
240 241 5.103940 AGCCCATAATCCTTACTCACAATGT 60.104 40.000 0.00 0.00 0.00 2.71
241 242 5.380043 AGCCCATAATCCTTACTCACAATG 58.620 41.667 0.00 0.00 0.00 2.82
242 243 5.653255 AGCCCATAATCCTTACTCACAAT 57.347 39.130 0.00 0.00 0.00 2.71
243 244 5.450818 AAGCCCATAATCCTTACTCACAA 57.549 39.130 0.00 0.00 0.00 3.33
247 248 6.017357 CCGTAAAAAGCCCATAATCCTTACTC 60.017 42.308 0.00 0.00 0.00 2.59
250 251 4.581409 GCCGTAAAAAGCCCATAATCCTTA 59.419 41.667 0.00 0.00 0.00 2.69
279 280 5.851047 TGATATCTCAAATATGCACGCTG 57.149 39.130 3.98 0.00 0.00 5.18
282 283 6.424812 TGGTCTTGATATCTCAAATATGCACG 59.575 38.462 3.98 0.00 40.78 5.34
285 286 7.976135 ACTGGTCTTGATATCTCAAATATGC 57.024 36.000 3.98 0.00 40.78 3.14
292 293 5.939883 CCACAAAACTGGTCTTGATATCTCA 59.060 40.000 3.98 0.00 0.00 3.27
300 301 2.358898 CCACTCCACAAAACTGGTCTTG 59.641 50.000 0.00 0.00 32.50 3.02
316 317 5.163332 ACGGAGGGAGTATTTATTTCCACTC 60.163 44.000 0.00 0.00 37.32 3.51
321 322 4.748600 CCGAACGGAGGGAGTATTTATTTC 59.251 45.833 7.53 0.00 37.50 2.17
329 330 0.038744 AAGTCCGAACGGAGGGAGTA 59.961 55.000 16.35 0.00 46.16 2.59
330 331 0.038744 TAAGTCCGAACGGAGGGAGT 59.961 55.000 16.35 3.29 46.16 3.85
331 332 0.455005 GTAAGTCCGAACGGAGGGAG 59.545 60.000 16.35 0.00 46.16 4.30
332 333 0.038744 AGTAAGTCCGAACGGAGGGA 59.961 55.000 16.35 1.82 46.16 4.20
333 334 0.893447 AAGTAAGTCCGAACGGAGGG 59.107 55.000 16.35 0.00 46.16 4.30
334 335 1.271656 ACAAGTAAGTCCGAACGGAGG 59.728 52.381 16.35 3.56 46.16 4.30
335 336 2.288030 ACACAAGTAAGTCCGAACGGAG 60.288 50.000 16.35 5.63 46.16 4.63
336 337 1.682854 ACACAAGTAAGTCCGAACGGA 59.317 47.619 12.04 12.04 42.90 4.69
337 338 2.056577 GACACAAGTAAGTCCGAACGG 58.943 52.381 6.94 6.94 0.00 4.44
338 339 2.724690 CTGACACAAGTAAGTCCGAACG 59.275 50.000 0.00 0.00 33.89 3.95
339 340 3.973657 TCTGACACAAGTAAGTCCGAAC 58.026 45.455 0.00 0.00 33.89 3.95
340 341 4.866508 ATCTGACACAAGTAAGTCCGAA 57.133 40.909 0.00 0.00 32.95 4.30
341 342 5.163550 CCATATCTGACACAAGTAAGTCCGA 60.164 44.000 0.00 0.00 33.57 4.55
342 343 5.043903 CCATATCTGACACAAGTAAGTCCG 58.956 45.833 0.00 0.00 33.89 4.79
343 344 6.222038 TCCATATCTGACACAAGTAAGTCC 57.778 41.667 0.00 0.00 33.89 3.85
344 345 7.268586 ACATCCATATCTGACACAAGTAAGTC 58.731 38.462 0.00 0.00 35.37 3.01
345 346 7.187824 ACATCCATATCTGACACAAGTAAGT 57.812 36.000 0.00 0.00 0.00 2.24
346 347 9.416794 GATACATCCATATCTGACACAAGTAAG 57.583 37.037 0.00 0.00 0.00 2.34
347 348 9.147732 AGATACATCCATATCTGACACAAGTAA 57.852 33.333 0.00 0.00 39.87 2.24
348 349 8.712228 AGATACATCCATATCTGACACAAGTA 57.288 34.615 0.00 0.00 39.87 2.24
349 350 7.609097 AGATACATCCATATCTGACACAAGT 57.391 36.000 0.00 0.00 39.87 3.16
350 351 9.018582 TCTAGATACATCCATATCTGACACAAG 57.981 37.037 5.70 0.00 41.17 3.16
351 352 8.940397 TCTAGATACATCCATATCTGACACAA 57.060 34.615 5.70 0.00 41.17 3.33
352 353 8.797438 GTTCTAGATACATCCATATCTGACACA 58.203 37.037 0.00 0.00 41.17 3.72
353 354 9.019656 AGTTCTAGATACATCCATATCTGACAC 57.980 37.037 0.00 0.78 41.17 3.67
383 384 8.939929 CGCAAAAATGGATGTATCTAGATGTAT 58.060 33.333 15.79 9.11 0.00 2.29
384 385 8.147704 TCGCAAAAATGGATGTATCTAGATGTA 58.852 33.333 15.79 4.44 0.00 2.29
385 386 6.992123 TCGCAAAAATGGATGTATCTAGATGT 59.008 34.615 15.79 1.25 0.00 3.06
386 387 7.041848 TGTCGCAAAAATGGATGTATCTAGATG 60.042 37.037 15.79 0.00 0.00 2.90
387 388 6.992123 TGTCGCAAAAATGGATGTATCTAGAT 59.008 34.615 10.73 10.73 0.00 1.98
388 389 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
389 390 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
390 391 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
391 392 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
392 393 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
393 394 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
394 395 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
395 396 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
396 397 6.808212 AGAATTACTTGTCGCAAAAATGGATG 59.192 34.615 0.00 0.00 0.00 3.51
397 398 6.808212 CAGAATTACTTGTCGCAAAAATGGAT 59.192 34.615 0.00 0.00 0.00 3.41
398 399 6.016693 TCAGAATTACTTGTCGCAAAAATGGA 60.017 34.615 0.00 0.00 0.00 3.41
399 400 6.148948 TCAGAATTACTTGTCGCAAAAATGG 58.851 36.000 0.00 0.00 0.00 3.16
400 401 7.493313 GTTCAGAATTACTTGTCGCAAAAATG 58.507 34.615 0.00 0.00 0.00 2.32
401 402 6.359617 CGTTCAGAATTACTTGTCGCAAAAAT 59.640 34.615 0.00 0.00 0.00 1.82
402 403 5.679355 CGTTCAGAATTACTTGTCGCAAAAA 59.321 36.000 0.00 0.00 0.00 1.94
403 404 5.201910 CGTTCAGAATTACTTGTCGCAAAA 58.798 37.500 0.00 0.00 0.00 2.44
404 405 4.319190 CCGTTCAGAATTACTTGTCGCAAA 60.319 41.667 0.00 0.00 0.00 3.68
405 406 3.185594 CCGTTCAGAATTACTTGTCGCAA 59.814 43.478 0.00 0.00 0.00 4.85
406 407 2.734606 CCGTTCAGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
407 408 2.991190 TCCGTTCAGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
408 409 3.612860 CCTCCGTTCAGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
409 410 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
410 411 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
411 412 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
412 413 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
413 414 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
414 415 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
415 416 4.960469 ACATACTCCCTCCGTTCAGAATTA 59.040 41.667 0.00 0.00 0.00 1.40
416 417 3.775316 ACATACTCCCTCCGTTCAGAATT 59.225 43.478 0.00 0.00 0.00 2.17
417 418 3.133003 CACATACTCCCTCCGTTCAGAAT 59.867 47.826 0.00 0.00 0.00 2.40
418 419 2.496070 CACATACTCCCTCCGTTCAGAA 59.504 50.000 0.00 0.00 0.00 3.02
419 420 2.100197 CACATACTCCCTCCGTTCAGA 58.900 52.381 0.00 0.00 0.00 3.27
420 421 1.825474 ACACATACTCCCTCCGTTCAG 59.175 52.381 0.00 0.00 0.00 3.02
421 422 1.548719 CACACATACTCCCTCCGTTCA 59.451 52.381 0.00 0.00 0.00 3.18
422 423 1.549170 ACACACATACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
423 424 1.275291 CACACACATACTCCCTCCGTT 59.725 52.381 0.00 0.00 0.00 4.44
424 425 0.895530 CACACACATACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
425 426 0.895530 ACACACACATACTCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
426 427 1.066143 CCACACACACATACTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
427 428 1.623811 ACCACACACACATACTCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
428 429 1.729586 ACCACACACACATACTCCCT 58.270 50.000 0.00 0.00 0.00 4.20
429 430 2.423577 GAACCACACACACATACTCCC 58.576 52.381 0.00 0.00 0.00 4.30
430 431 2.224426 TGGAACCACACACACATACTCC 60.224 50.000 0.00 0.00 0.00 3.85
431 432 3.067106 CTGGAACCACACACACATACTC 58.933 50.000 0.00 0.00 0.00 2.59
432 433 2.810400 GCTGGAACCACACACACATACT 60.810 50.000 0.00 0.00 0.00 2.12
433 434 1.535462 GCTGGAACCACACACACATAC 59.465 52.381 0.00 0.00 0.00 2.39
434 435 1.419762 AGCTGGAACCACACACACATA 59.580 47.619 0.00 0.00 0.00 2.29
439 440 0.107831 TGGTAGCTGGAACCACACAC 59.892 55.000 2.54 0.00 42.10 3.82
448 449 4.473196 TGGAAAATCAGTATGGTAGCTGGA 59.527 41.667 0.00 0.00 36.16 3.86
459 460 7.112122 ACAATGTAGCTGATGGAAAATCAGTA 58.888 34.615 14.89 5.71 45.38 2.74
536 572 4.162320 ACTCAGTTCAGACCAAGTTCAGAA 59.838 41.667 0.00 0.00 0.00 3.02
542 578 3.742640 GCTTCACTCAGTTCAGACCAAGT 60.743 47.826 0.00 0.00 0.00 3.16
544 580 2.170397 TGCTTCACTCAGTTCAGACCAA 59.830 45.455 0.00 0.00 0.00 3.67
547 583 3.005261 TCTCTGCTTCACTCAGTTCAGAC 59.995 47.826 0.00 0.00 33.48 3.51
550 592 3.005261 GTCTCTCTGCTTCACTCAGTTCA 59.995 47.826 0.00 0.00 33.48 3.18
552 594 2.030363 CGTCTCTCTGCTTCACTCAGTT 60.030 50.000 0.00 0.00 33.48 3.16
553 595 1.539388 CGTCTCTCTGCTTCACTCAGT 59.461 52.381 0.00 0.00 33.48 3.41
554 596 1.732077 GCGTCTCTCTGCTTCACTCAG 60.732 57.143 0.00 0.00 0.00 3.35
556 598 0.796491 CGCGTCTCTCTGCTTCACTC 60.796 60.000 0.00 0.00 0.00 3.51
557 599 1.211449 CGCGTCTCTCTGCTTCACT 59.789 57.895 0.00 0.00 0.00 3.41
559 601 0.032130 AAACGCGTCTCTCTGCTTCA 59.968 50.000 14.44 0.00 0.00 3.02
562 604 1.983972 CTAAAACGCGTCTCTCTGCT 58.016 50.000 14.44 0.00 0.00 4.24
563 605 0.367210 GCTAAAACGCGTCTCTCTGC 59.633 55.000 14.44 9.18 0.00 4.26
565 607 1.813786 AGAGCTAAAACGCGTCTCTCT 59.186 47.619 14.44 16.27 34.40 3.10
566 608 2.178783 GAGAGCTAAAACGCGTCTCTC 58.821 52.381 28.20 28.20 41.73 3.20
567 609 1.540267 TGAGAGCTAAAACGCGTCTCT 59.460 47.619 22.78 22.78 36.27 3.10
568 610 1.978542 TGAGAGCTAAAACGCGTCTC 58.021 50.000 14.44 14.79 36.06 3.36
569 611 2.263077 CATGAGAGCTAAAACGCGTCT 58.737 47.619 14.44 4.19 34.40 4.18
570 612 1.993370 ACATGAGAGCTAAAACGCGTC 59.007 47.619 14.44 0.00 34.40 5.19
571 613 2.080286 ACATGAGAGCTAAAACGCGT 57.920 45.000 5.58 5.58 34.40 6.01
572 614 3.857665 TCTAACATGAGAGCTAAAACGCG 59.142 43.478 3.53 3.53 34.40 6.01
574 616 6.366332 AGTTGTCTAACATGAGAGCTAAAACG 59.634 38.462 0.00 0.00 39.30 3.60
576 618 7.173218 CCAAGTTGTCTAACATGAGAGCTAAAA 59.827 37.037 0.00 0.00 37.62 1.52
577 619 6.650807 CCAAGTTGTCTAACATGAGAGCTAAA 59.349 38.462 0.00 0.00 37.62 1.85
578 620 6.166279 CCAAGTTGTCTAACATGAGAGCTAA 58.834 40.000 0.00 0.00 37.62 3.09
582 624 5.788450 AGACCAAGTTGTCTAACATGAGAG 58.212 41.667 0.00 0.00 43.65 3.20
585 627 5.304357 TCTGAGACCAAGTTGTCTAACATGA 59.696 40.000 0.00 0.00 45.41 3.07
586 628 5.406780 GTCTGAGACCAAGTTGTCTAACATG 59.593 44.000 0.00 0.00 45.41 3.21
590 632 4.023107 CGAGTCTGAGACCAAGTTGTCTAA 60.023 45.833 9.33 0.00 45.41 2.10
593 635 2.608261 CCGAGTCTGAGACCAAGTTGTC 60.608 54.545 9.33 0.00 32.18 3.18
595 637 1.613925 TCCGAGTCTGAGACCAAGTTG 59.386 52.381 9.33 0.00 32.18 3.16
596 638 1.996798 TCCGAGTCTGAGACCAAGTT 58.003 50.000 9.33 0.00 32.18 2.66
597 639 2.223803 ATCCGAGTCTGAGACCAAGT 57.776 50.000 9.33 0.00 32.18 3.16
598 640 3.601443 AAATCCGAGTCTGAGACCAAG 57.399 47.619 9.33 0.79 32.18 3.61
599 641 4.341487 TCTAAATCCGAGTCTGAGACCAA 58.659 43.478 9.33 0.00 32.18 3.67
600 642 3.964411 TCTAAATCCGAGTCTGAGACCA 58.036 45.455 9.33 0.00 32.18 4.02
601 643 4.985538 TTCTAAATCCGAGTCTGAGACC 57.014 45.455 9.33 0.00 32.18 3.85
602 644 4.794246 CGTTTCTAAATCCGAGTCTGAGAC 59.206 45.833 3.98 3.98 0.00 3.36
603 645 4.698780 TCGTTTCTAAATCCGAGTCTGAGA 59.301 41.667 0.00 0.00 0.00 3.27
606 648 5.634020 ACTTTCGTTTCTAAATCCGAGTCTG 59.366 40.000 0.00 0.00 0.00 3.51
607 649 5.780984 ACTTTCGTTTCTAAATCCGAGTCT 58.219 37.500 0.00 0.00 0.00 3.24
608 650 5.862860 AGACTTTCGTTTCTAAATCCGAGTC 59.137 40.000 0.00 0.00 0.00 3.36
609 651 5.634020 CAGACTTTCGTTTCTAAATCCGAGT 59.366 40.000 0.00 0.00 0.00 4.18
610 652 5.444745 GCAGACTTTCGTTTCTAAATCCGAG 60.445 44.000 0.00 0.00 0.00 4.63
611 653 4.387862 GCAGACTTTCGTTTCTAAATCCGA 59.612 41.667 0.00 0.00 0.00 4.55
613 655 4.695928 AGGCAGACTTTCGTTTCTAAATCC 59.304 41.667 0.00 0.00 0.00 3.01
614 656 5.864628 AGGCAGACTTTCGTTTCTAAATC 57.135 39.130 0.00 0.00 0.00 2.17
615 657 5.875359 CCTAGGCAGACTTTCGTTTCTAAAT 59.125 40.000 0.00 0.00 0.00 1.40
616 658 5.235516 CCTAGGCAGACTTTCGTTTCTAAA 58.764 41.667 0.00 0.00 0.00 1.85
617 659 4.817517 CCTAGGCAGACTTTCGTTTCTAA 58.182 43.478 0.00 0.00 0.00 2.10
618 660 3.368116 GCCTAGGCAGACTTTCGTTTCTA 60.368 47.826 29.33 0.00 41.49 2.10
620 662 1.732809 GCCTAGGCAGACTTTCGTTTC 59.267 52.381 29.33 0.00 41.49 2.78
621 663 1.348036 AGCCTAGGCAGACTTTCGTTT 59.652 47.619 34.70 7.25 44.88 3.60
622 664 0.977395 AGCCTAGGCAGACTTTCGTT 59.023 50.000 34.70 7.82 44.88 3.85
624 666 0.532573 TCAGCCTAGGCAGACTTTCG 59.467 55.000 34.70 12.36 44.88 3.46
630 672 1.754621 CCGAGTCAGCCTAGGCAGA 60.755 63.158 34.70 29.31 44.88 4.26
632 674 0.687757 ATTCCGAGTCAGCCTAGGCA 60.688 55.000 34.70 13.55 44.88 4.75
633 675 0.032815 GATTCCGAGTCAGCCTAGGC 59.967 60.000 27.19 27.19 36.00 3.93
634 676 1.403814 TGATTCCGAGTCAGCCTAGG 58.596 55.000 3.67 3.67 37.30 3.02
636 678 4.191544 CAATTTGATTCCGAGTCAGCCTA 58.808 43.478 0.00 0.00 0.00 3.93
637 679 3.012518 CAATTTGATTCCGAGTCAGCCT 58.987 45.455 0.00 0.00 0.00 4.58
638 680 2.478539 GCAATTTGATTCCGAGTCAGCC 60.479 50.000 0.00 0.00 0.00 4.85
639 681 2.421424 AGCAATTTGATTCCGAGTCAGC 59.579 45.455 0.00 0.00 0.00 4.26
640 682 4.409570 CAAGCAATTTGATTCCGAGTCAG 58.590 43.478 0.00 0.00 39.21 3.51
641 683 3.366273 GCAAGCAATTTGATTCCGAGTCA 60.366 43.478 0.00 0.00 39.21 3.41
642 684 3.174375 GCAAGCAATTTGATTCCGAGTC 58.826 45.455 0.00 0.00 39.21 3.36
646 688 1.270971 CGGCAAGCAATTTGATTCCG 58.729 50.000 17.37 17.37 39.21 4.30
660 702 0.108585 AGAAAGAGAAGTGGCGGCAA 59.891 50.000 15.50 0.00 0.00 4.52
665 1375 1.021920 GCGGGAGAAAGAGAAGTGGC 61.022 60.000 0.00 0.00 0.00 5.01
667 1377 0.038159 ACGCGGGAGAAAGAGAAGTG 60.038 55.000 12.47 0.00 0.00 3.16
669 1379 0.458716 GGACGCGGGAGAAAGAGAAG 60.459 60.000 12.47 0.00 0.00 2.85
670 1380 0.898789 AGGACGCGGGAGAAAGAGAA 60.899 55.000 12.47 0.00 0.00 2.87
680 1390 2.731027 GCAAGAAAATAAAGGACGCGGG 60.731 50.000 12.47 0.00 0.00 6.13
681 1391 2.161609 AGCAAGAAAATAAAGGACGCGG 59.838 45.455 12.47 0.00 0.00 6.46
682 1392 3.417185 GAGCAAGAAAATAAAGGACGCG 58.583 45.455 3.53 3.53 0.00 6.01
683 1393 3.440522 AGGAGCAAGAAAATAAAGGACGC 59.559 43.478 0.00 0.00 0.00 5.19
684 1394 4.695455 TCAGGAGCAAGAAAATAAAGGACG 59.305 41.667 0.00 0.00 0.00 4.79
685 1395 6.575162 TTCAGGAGCAAGAAAATAAAGGAC 57.425 37.500 0.00 0.00 0.00 3.85
701 1411 1.132262 GACGTCTCTCTGCTTCAGGAG 59.868 57.143 8.70 0.00 33.36 3.69
702 1412 1.169577 GACGTCTCTCTGCTTCAGGA 58.830 55.000 8.70 0.00 31.51 3.86
737 2481 3.141673 CGCGCACGTTCGTTTTCG 61.142 61.111 8.75 0.00 38.51 3.46
758 2753 2.135933 CGAGTCCAAGACCAAGTTGTC 58.864 52.381 1.45 0.08 32.18 3.18
760 2755 1.070134 TCCGAGTCCAAGACCAAGTTG 59.930 52.381 0.00 0.00 32.18 3.16
761 2756 1.420430 TCCGAGTCCAAGACCAAGTT 58.580 50.000 0.00 0.00 32.18 2.66
762 2757 1.645710 ATCCGAGTCCAAGACCAAGT 58.354 50.000 0.00 0.00 32.18 3.16
763 2758 2.028112 TGAATCCGAGTCCAAGACCAAG 60.028 50.000 0.00 0.00 32.18 3.61
765 2760 1.550524 CTGAATCCGAGTCCAAGACCA 59.449 52.381 0.00 0.00 32.18 4.02
766 2761 1.825474 TCTGAATCCGAGTCCAAGACC 59.175 52.381 0.00 0.00 32.18 3.85
767 2762 3.594603 TTCTGAATCCGAGTCCAAGAC 57.405 47.619 0.00 0.00 0.00 3.01
772 2772 2.649331 TCGTTTCTGAATCCGAGTCC 57.351 50.000 8.14 0.00 0.00 3.85
785 2785 4.582452 AACGCGCAGTTTCGTTTC 57.418 50.000 5.73 0.00 45.25 2.78
794 2797 0.316196 GGCATAGCTAAAACGCGCAG 60.316 55.000 5.73 2.42 34.40 5.18
846 2894 1.613630 ATGCGGGAGACAGGGAAGT 60.614 57.895 0.00 0.00 0.00 3.01
852 2900 2.918712 ATAAAGGATGCGGGAGACAG 57.081 50.000 0.00 0.00 0.00 3.51
853 2901 3.644966 AAATAAAGGATGCGGGAGACA 57.355 42.857 0.00 0.00 0.00 3.41
858 2906 3.131046 AGCAAGAAAATAAAGGATGCGGG 59.869 43.478 0.00 0.00 37.40 6.13
859 2907 4.354587 GAGCAAGAAAATAAAGGATGCGG 58.645 43.478 0.00 0.00 37.40 5.69
860 2908 4.031028 CGAGCAAGAAAATAAAGGATGCG 58.969 43.478 0.00 0.00 37.40 4.73
861 2909 3.793492 GCGAGCAAGAAAATAAAGGATGC 59.207 43.478 0.00 0.00 0.00 3.91
862 2910 4.354587 GGCGAGCAAGAAAATAAAGGATG 58.645 43.478 0.00 0.00 0.00 3.51
863 2911 3.065371 CGGCGAGCAAGAAAATAAAGGAT 59.935 43.478 0.00 0.00 0.00 3.24
864 2912 2.418628 CGGCGAGCAAGAAAATAAAGGA 59.581 45.455 0.00 0.00 0.00 3.36
865 2913 2.785679 CGGCGAGCAAGAAAATAAAGG 58.214 47.619 0.00 0.00 0.00 3.11
892 2956 0.969149 CAGATGGATCGGGGATTCGA 59.031 55.000 0.00 0.00 43.61 3.71
1092 3191 1.303236 CATCAAGGCGGGGTTCACA 60.303 57.895 0.00 0.00 0.00 3.58
1210 3313 2.887568 GACGGCGACATGGAGCTG 60.888 66.667 16.62 18.17 44.74 4.24
1362 3480 0.456142 CGTTCTCGATCAGTTGGCGA 60.456 55.000 0.00 0.00 39.71 5.54
1441 3568 2.507769 TCTGCTGCGCTCGATGTG 60.508 61.111 9.73 0.00 0.00 3.21
1515 7838 2.104967 ACGTCGGAGTAATGGATCCAA 58.895 47.619 20.67 0.00 35.14 3.53
1869 8302 7.826744 AGGGATTGAAAGAACACTAGAAATCTC 59.173 37.037 0.00 0.00 0.00 2.75
2326 9554 2.488153 GAGTTCACCAACCAATGCTACC 59.512 50.000 0.00 0.00 32.22 3.18
2554 9849 1.601903 TGGTCAAATCGTGTGCTTGTC 59.398 47.619 0.00 0.00 0.00 3.18
2560 9855 3.961477 TGTTCTTGGTCAAATCGTGTG 57.039 42.857 0.00 0.00 0.00 3.82
2561 9856 5.299279 AGAAATGTTCTTGGTCAAATCGTGT 59.701 36.000 0.00 0.00 36.36 4.49
2562 9857 5.762045 AGAAATGTTCTTGGTCAAATCGTG 58.238 37.500 0.00 0.00 36.36 4.35
2593 10329 9.209175 GAAATACAGCCACTTGGAATATACTAG 57.791 37.037 0.00 0.00 37.39 2.57
2595 10331 7.573710 TGAAATACAGCCACTTGGAATATACT 58.426 34.615 0.00 0.00 37.39 2.12
2596 10332 7.041098 CCTGAAATACAGCCACTTGGAATATAC 60.041 40.741 0.00 0.00 44.52 1.47
2597 10333 6.998074 CCTGAAATACAGCCACTTGGAATATA 59.002 38.462 0.00 0.00 44.52 0.86
2598 10334 5.829924 CCTGAAATACAGCCACTTGGAATAT 59.170 40.000 0.00 0.00 44.52 1.28
2610 10349 4.187694 CTGTTCCTCTCCTGAAATACAGC 58.812 47.826 0.00 0.00 44.52 4.40
2633 10375 7.492524 TGCATTGTTGAGGTGTAAACAAATAA 58.507 30.769 5.20 0.00 46.22 1.40
2637 10379 4.642437 TCTGCATTGTTGAGGTGTAAACAA 59.358 37.500 3.70 3.70 46.90 2.83
2704 10660 3.323751 TGATGCATGTATCAGGATCCG 57.676 47.619 20.94 1.36 32.39 4.18
2706 10662 6.570672 AACAATGATGCATGTATCAGGATC 57.429 37.500 27.00 3.04 40.16 3.36
2739 10695 4.335400 TTCAGACAGCAAGTACACATGA 57.665 40.909 0.00 0.00 0.00 3.07
2741 10697 6.441274 CAAAATTCAGACAGCAAGTACACAT 58.559 36.000 0.00 0.00 0.00 3.21
2742 10698 5.733091 GCAAAATTCAGACAGCAAGTACACA 60.733 40.000 0.00 0.00 0.00 3.72
2744 10700 4.337836 TGCAAAATTCAGACAGCAAGTACA 59.662 37.500 0.00 0.00 0.00 2.90
2746 10702 5.067674 AGTTGCAAAATTCAGACAGCAAGTA 59.932 36.000 0.00 0.00 42.03 2.24
2748 10704 4.208460 CAGTTGCAAAATTCAGACAGCAAG 59.792 41.667 0.00 0.00 41.91 4.01
2749 10705 4.114073 CAGTTGCAAAATTCAGACAGCAA 58.886 39.130 0.00 0.00 39.38 3.91
2782 10745 5.581605 CATATGCACCAATTGTACTGAACC 58.418 41.667 4.43 0.00 0.00 3.62
2800 10763 3.949754 ACATGAAACTGGTCTGGCATATG 59.050 43.478 0.00 0.00 0.00 1.78
2823 10786 2.263077 CCGTCAAGTATCTGCAGTGTC 58.737 52.381 14.67 5.21 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.