AutoCloner

Multiple sequence alignment - TraesCS7A01G433500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G433500	chr7A	100.000	2216	0	0	1	2216	627013357	627015572	0.000000e+00	4093.0
1	TraesCS7A01G433500	chr7A	97.834	2216	47	1	1	2216	627051033	627053247	0.000000e+00	3825.0
2	TraesCS7A01G433500	chr7A	93.264	861	57	1	994	1854	627234661	627235520	0.000000e+00	1267.0
3	TraesCS7A01G433500	chr7A	97.321	336	8	1	1881	2216	500646256	500646590	8.880000e-159	569.0
4	TraesCS7A01G433500	chr7A	92.105	342	27	0	994	1335	627046053	627046394	1.190000e-132	483.0
5	TraesCS7A01G433500	chr7A	80.480	666	77	27	673	1326	627119948	627120572	5.580000e-126	460.0
6	TraesCS7A01G433500	chr7A	89.614	337	28	4	1523	1853	580505461	580505796	2.630000e-114	422.0
7	TraesCS7A01G433500	chr7A	78.963	328	48	13	679	994	627045766	627046084	1.040000e-48	204.0
8	TraesCS7A01G433500	chr7A	78.102	274	26	24	742	994	627234432	627234692	2.290000e-30	143.0
9	TraesCS7A01G433500	chr7A	82.143	140	13	8	862	994	627009157	627009291	2.330000e-20	110.0
10	TraesCS7A01G433500	chr5D	90.564	869	69	9	994	1854	289497066	289497929	0.000000e+00	1138.0
11	TraesCS7A01G433500	chr5D	85.526	532	42	9	493	994	289496571	289497097	7.010000e-145	523.0
12	TraesCS7A01G433500	chr5D	90.691	376	31	2	994	1369	289356349	289356720	4.250000e-137	497.0
13	TraesCS7A01G433500	chr5D	84.615	104	9	5	408	511	188826619	188826523	1.810000e-16	97.1
14	TraesCS7A01G433500	chr1B	90.449	869	69	10	994	1854	133125185	133126047	0.000000e+00	1133.0
15	TraesCS7A01G433500	chr1B	78.614	332	49	16	673	994	426482542	426482861	1.340000e-47	200.0
16	TraesCS7A01G433500	chr1B	84.422	199	29	2	1	197	659180045	659179847	6.240000e-46	195.0
17	TraesCS7A01G433500	chr2B	89.080	870	81	10	994	1854	127790795	127791659	0.000000e+00	1068.0
18	TraesCS7A01G433500	chr2B	89.601	827	71	10	994	1810	135511974	135511153	0.000000e+00	1037.0
19	TraesCS7A01G433500	chr2B	90.909	44	4	0	200	243	132855579	132855622	2.380000e-05	60.2
20	TraesCS7A01G433500	chr2A	97.619	336	7	1	1881	2216	49959475	49959141	1.910000e-160	575.0
21	TraesCS7A01G433500	chr2A	97.321	336	8	1	1881	2216	587457267	587457601	8.880000e-159	569.0
22	TraesCS7A01G433500	chr3A	97.612	335	7	1	1882	2216	660469377	660469044	6.860000e-160	573.0
23	TraesCS7A01G433500	chr3A	88.889	90	5	2	408	497	507291490	507291574	3.010000e-19	106.0
24	TraesCS7A01G433500	chr6A	97.321	336	8	1	1881	2216	67548874	67548540	8.880000e-159	569.0
25	TraesCS7A01G433500	chr6A	97.024	336	9	1	1881	2216	121772375	121772709	4.130000e-157	564.0
26	TraesCS7A01G433500	chr6A	97.024	336	9	1	1881	2216	430876896	430877230	4.130000e-157	564.0
27	TraesCS7A01G433500	chr6A	88.988	336	33	2	1523	1854	107263172	107262837	1.580000e-111	412.0
28	TraesCS7A01G433500	chr6A	88.372	86	4	4	420	505	461836943	461836864	5.040000e-17	99.0
29	TraesCS7A01G433500	chr6A	84.158	101	9	4	400	498	420829766	420829861	8.430000e-15	91.6
30	TraesCS7A01G433500	chr6A	100.000	28	0	0	649	676	572132307	572132280	4.000000e-03	52.8
31	TraesCS7A01G433500	chr5A	97.321	336	8	1	1881	2216	60090115	60089781	8.880000e-159	569.0
32	TraesCS7A01G433500	chr5A	86.517	89	7	2	403	491	458199277	458199194	2.340000e-15	93.5
33	TraesCS7A01G433500	chr7B	95.724	304	11	1	1551	1854	588879674	588879975	2.560000e-134	488.0
34	TraesCS7A01G433500	chr7B	91.545	343	29	0	994	1336	588879210	588879552	7.160000e-130	473.0
35	TraesCS7A01G433500	chr7B	77.985	268	29	14	743	994	588878988	588879241	8.250000e-30	141.0
36	TraesCS7A01G433500	chr7B	95.238	42	2	0	203	244	706125422	706125463	1.420000e-07	67.6
37	TraesCS7A01G433500	chr7B	95.122	41	2	0	203	243	24181469	24181509	5.110000e-07	65.8
38	TraesCS7A01G433500	chr7B	93.182	44	3	0	200	243	243265263	243265306	5.110000e-07	65.8
39	TraesCS7A01G433500	chr6B	90.099	202	16	2	1	198	476119908	476119707	2.180000e-65	259.0
40	TraesCS7A01G433500	chr6B	86.567	201	22	4	1	198	664030636	664030834	1.330000e-52	217.0
41	TraesCS7A01G433500	chr6B	85.714	91	8	2	408	498	462028779	462028694	8.430000e-15	91.6
42	TraesCS7A01G433500	chrUn	87.310	197	21	3	1	193	102655248	102655052	2.860000e-54	222.0
43	TraesCS7A01G433500	chrUn	97.059	34	1	0	647	680	62957684	62957651	8.550000e-05	58.4
44	TraesCS7A01G433500	chr6D	86.829	205	19	4	1	197	26117920	26117716	2.860000e-54	222.0
45	TraesCS7A01G433500	chr6D	84.466	206	24	4	1	198	114878918	114878713	1.740000e-46	196.0
46	TraesCS7A01G433500	chr6D	91.304	46	3	1	203	247	159490530	159490575	6.610000e-06	62.1
47	TraesCS7A01G433500	chr1A	84.360	211	26	5	1	204	208906474	208906264	1.340000e-47	200.0
48	TraesCS7A01G433500	chr1A	87.209	86	7	4	412	497	583304646	583304727	6.510000e-16	95.3
49	TraesCS7A01G433500	chr4A	84.541	207	22	7	1	199	165363942	165364146	1.740000e-46	196.0
50	TraesCS7A01G433500	chr7D	75.769	260	41	12	744	994	509602011	509602257	6.470000e-21	111.0
51	TraesCS7A01G433500	chr5B	83.654	104	10	5	408	511	217907767	217907671	8.430000e-15	91.6
52	TraesCS7A01G433500	chr5B	96.875	32	1	0	649	680	461364300	461364269	1.000000e-03	54.7
53	TraesCS7A01G433500	chr3D	80.899	89	17	0	499	587	496401206	496401118	1.100000e-08	71.3
54	TraesCS7A01G433500	chr3D	97.143	35	1	0	209	243	317090691	317090657	2.380000e-05	60.2
55	TraesCS7A01G433500	chr3B	95.349	43	1	1	238	280	588857596	588857555	1.420000e-07	67.6
56	TraesCS7A01G433500	chr3B	100.000	33	0	0	647	679	734747774	734747806	6.610000e-06	62.1
57	TraesCS7A01G433500	chr4B	96.875	32	1	0	496	527	1999728	1999759	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G433500	chr7A	627013357	627015572	2215	False	4093.000000	4093	100.000	1	2216	1	chr7A.!!$F4	2215
1	TraesCS7A01G433500	chr7A	627051033	627053247	2214	False	3825.000000	3825	97.834	1	2216	1	chr7A.!!$F5	2215
2	TraesCS7A01G433500	chr7A	627234432	627235520	1088	False	705.000000	1267	85.683	742	1854	2	chr7A.!!$F8	1112
3	TraesCS7A01G433500	chr7A	627119948	627120572	624	False	460.000000	460	80.480	673	1326	1	chr7A.!!$F6	653
4	TraesCS7A01G433500	chr7A	627045766	627046394	628	False	343.500000	483	85.534	679	1335	2	chr7A.!!$F7	656
5	TraesCS7A01G433500	chr5D	289496571	289497929	1358	False	830.500000	1138	88.045	493	1854	2	chr5D.!!$F2	1361
6	TraesCS7A01G433500	chr1B	133125185	133126047	862	False	1133.000000	1133	90.449	994	1854	1	chr1B.!!$F1	860
7	TraesCS7A01G433500	chr2B	127790795	127791659	864	False	1068.000000	1068	89.080	994	1854	1	chr2B.!!$F1	860
8	TraesCS7A01G433500	chr2B	135511153	135511974	821	True	1037.000000	1037	89.601	994	1810	1	chr2B.!!$R1	816
9	TraesCS7A01G433500	chr7B	588878988	588879975	987	False	367.333333	488	88.418	743	1854	3	chr7B.!!$F4	1111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
589	590	1.432251	CGACGGCAGGAATCTACGT	59.568	57.895	0.0	0.0	38.09	3.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2071	2190	0.609131	CGACACAAGGGGAGCCAAAT	60.609	55.0	0.0	0.0	0.0	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	2.664851	CTTGGAGCGCACGGTTCA	60.665	61.111	11.47	0.00	0.00	3.18
56	57	1.869767	CATATGCGGCTTCACCTCTTC	59.130	52.381	0.00	0.00	35.61	2.87
79	80	3.491267	GCGTAGTGCTAGGAATGATGTTC	59.509	47.826	0.00	0.00	41.73	3.18
84	85	3.691118	GTGCTAGGAATGATGTTCTTGCA	59.309	43.478	0.00	0.00	36.13	4.08
85	86	3.691118	TGCTAGGAATGATGTTCTTGCAC	59.309	43.478	0.00	0.00	34.29	4.57
126	127	2.520741	GGGTGTGTGTTGTGGGGG	60.521	66.667	0.00	0.00	0.00	5.40
291	292	9.533831	AAATTACATCAAGGTTTCTAGACCATT	57.466	29.630	3.61	0.00	42.35	3.16
300	301	6.126409	AGGTTTCTAGACCATTGAACAACAA	58.874	36.000	3.61	0.00	42.35	2.83
338	339	2.300787	CGCACCGCTATAACCGCTC	61.301	63.158	0.00	0.00	0.00	5.03
347	348	3.735208	CGCTATAACCGCTCCCATATCAG	60.735	52.174	0.00	0.00	0.00	2.90
364	365	1.968493	TCAGAGTCGGCTTACCTTGTT	59.032	47.619	0.00	0.00	0.00	2.83
372	373	4.508124	GTCGGCTTACCTTGTTGATGATAG	59.492	45.833	0.00	0.00	0.00	2.08
589	590	1.432251	CGACGGCAGGAATCTACGT	59.568	57.895	0.00	0.00	38.09	3.57
629	643	1.746220	ACTTGAGGAGGATCGAAGTCG	59.254	52.381	0.00	0.00	41.45	4.18
670	684	3.585862	GAGCATCTACAACCGAACTTGA	58.414	45.455	0.00	0.00	0.00	3.02
704	718	1.541147	CCAGCTTGCAAAGATTCCGAA	59.459	47.619	0.00	0.00	41.66	4.30
962	1006	5.439721	TGTTCATCATATCAAACCTCTGGG	58.560	41.667	0.00	0.00	38.88	4.45
963	1007	6.354213	ATGTTCATCATATCAAACCTCTGGGT	60.354	38.462	0.00	0.00	40.41	4.51
964	1008	5.296151	TCATCATATCAAACCTCTGGGTC	57.704	43.478	0.00	0.00	46.67	4.46
965	1009	4.971282	TCATCATATCAAACCTCTGGGTCT	59.029	41.667	0.00	0.00	46.67	3.85
966	1010	6.143206	TCATCATATCAAACCTCTGGGTCTA	58.857	40.000	0.00	0.00	46.67	2.59
967	1011	6.268617	TCATCATATCAAACCTCTGGGTCTAG	59.731	42.308	0.00	0.00	46.67	2.43
968	1012	5.777449	TCATATCAAACCTCTGGGTCTAGA	58.223	41.667	0.00	0.00	46.67	2.43
969	1013	6.202331	TCATATCAAACCTCTGGGTCTAGAA	58.798	40.000	0.00	0.00	46.67	2.10
970	1014	6.846505	TCATATCAAACCTCTGGGTCTAGAAT	59.153	38.462	0.00	0.00	46.67	2.40
971	1015	4.826274	TCAAACCTCTGGGTCTAGAATG	57.174	45.455	0.00	0.00	46.67	2.67
972	1016	4.425772	TCAAACCTCTGGGTCTAGAATGA	58.574	43.478	0.00	0.00	46.67	2.57
973	1017	5.032846	TCAAACCTCTGGGTCTAGAATGAT	58.967	41.667	0.00	0.00	46.67	2.45
974	1018	5.488919	TCAAACCTCTGGGTCTAGAATGATT	59.511	40.000	0.00	0.00	46.67	2.57
975	1019	5.622346	AACCTCTGGGTCTAGAATGATTC	57.378	43.478	0.00	0.00	46.67	2.52
976	1020	3.639094	ACCTCTGGGTCTAGAATGATTCG	59.361	47.826	0.00	0.00	43.38	3.34
977	1021	3.891977	CCTCTGGGTCTAGAATGATTCGA	59.108	47.826	0.00	0.00	34.02	3.71
978	1022	4.342378	CCTCTGGGTCTAGAATGATTCGAA	59.658	45.833	0.00	0.00	34.02	3.71
979	1023	5.263968	TCTGGGTCTAGAATGATTCGAAC	57.736	43.478	0.00	0.00	34.02	3.95
980	1024	4.956700	TCTGGGTCTAGAATGATTCGAACT	59.043	41.667	0.00	0.00	34.02	3.01
981	1025	5.067936	TCTGGGTCTAGAATGATTCGAACTC	59.932	44.000	0.00	0.12	34.02	3.01
982	1026	4.956700	TGGGTCTAGAATGATTCGAACTCT	59.043	41.667	0.00	3.12	34.02	3.24
983	1027	6.127101	TGGGTCTAGAATGATTCGAACTCTA	58.873	40.000	0.00	4.16	34.02	2.43
984	1028	6.263392	TGGGTCTAGAATGATTCGAACTCTAG	59.737	42.308	19.62	19.62	37.84	2.43
985	1029	6.263617	GGGTCTAGAATGATTCGAACTCTAGT	59.736	42.308	22.22	1.93	37.76	2.57
986	1030	7.357303	GGTCTAGAATGATTCGAACTCTAGTC	58.643	42.308	22.22	19.05	37.76	2.59
987	1031	7.067116	GTCTAGAATGATTCGAACTCTAGTCG	58.933	42.308	22.22	9.22	37.76	4.18
988	1032	6.985059	TCTAGAATGATTCGAACTCTAGTCGA	59.015	38.462	22.22	0.17	37.76	4.20
989	1033	5.812652	AGAATGATTCGAACTCTAGTCGAC	58.187	41.667	7.70	7.70	35.53	4.20
990	1034	5.354513	AGAATGATTCGAACTCTAGTCGACA	59.645	40.000	19.50	2.84	35.53	4.35
991	1035	5.759506	ATGATTCGAACTCTAGTCGACAT	57.240	39.130	19.50	5.54	35.53	3.06
992	1036	5.562506	TGATTCGAACTCTAGTCGACATT	57.437	39.130	19.50	0.00	35.53	2.71
1018	1093	7.553044	TGTCTAGAATGATTCGAACTCTAGTCA	59.447	37.037	22.22	20.79	37.76	3.41
1070	1145	1.927487	ATTGTCCTGCTTGATTGGCA	58.073	45.000	0.00	0.00	38.10	4.92
1476	1593	6.704310	TGGTATAGGTTAAAACTCACCACTC	58.296	40.000	2.36	0.00	35.25	3.51
1606	1723	1.474077	CCCTTGCTTGTTGAGTATGGC	59.526	52.381	0.00	0.00	35.00	4.40
1842	1961	1.524621	CCCTACTCATGCGCCCTTG	60.525	63.158	4.18	0.00	0.00	3.61
1903	2022	5.220796	GGCTTATTTACTTTCCCGTTGCTAG	60.221	44.000	0.00	0.00	0.00	3.42
2136	2255	2.623878	TACCCTCGAAAACTGTTGCA	57.376	45.000	0.00	0.00	0.00	4.08
2177	2296	5.585047	GGTTATCAAGACTATTTTCTGGCGT	59.415	40.000	0.00	0.00	0.00	5.68
2195	2314	0.811616	GTCGTTGCCAGGGAGCATAG	60.812	60.000	0.00	0.00	43.64	2.23

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	2.357034	GAACCGTGCGCTCCAAGA	60.357	61.111	9.73	0.00	0.00	3.02
25	26	0.235665	CCGCATATGATGAACCGTGC	59.764	55.000	6.97	0.00	0.00	5.34
34	35	1.696336	AGAGGTGAAGCCGCATATGAT	59.304	47.619	6.97	0.00	43.70	2.45
79	80	1.442769	ACATAGGCGTTGAGTGCAAG	58.557	50.000	0.00	0.00	34.01	4.01
84	85	2.224066	GCAGGATACATAGGCGTTGAGT	60.224	50.000	0.00	0.00	41.41	3.41
85	86	2.408050	GCAGGATACATAGGCGTTGAG	58.592	52.381	0.00	0.00	41.41	3.02
126	127	1.790623	ACACTCGATACAAACACACGC	59.209	47.619	0.00	0.00	0.00	5.34
291	292	3.067461	GCACATTGTAGGGTTGTTGTTCA	59.933	43.478	0.00	0.00	0.00	3.18
300	301	0.480690	TTGGTGGCACATTGTAGGGT	59.519	50.000	20.82	0.00	44.52	4.34
338	339	2.028930	GGTAAGCCGACTCTGATATGGG	60.029	54.545	0.00	0.00	0.00	4.00
347	348	2.450609	TCAACAAGGTAAGCCGACTC	57.549	50.000	0.00	0.00	40.50	3.36
364	365	5.009110	CACGAAGACTTCCTAGCTATCATCA	59.991	44.000	9.63	0.00	0.00	3.07
372	373	1.996191	CTTGCACGAAGACTTCCTAGC	59.004	52.381	9.63	11.00	32.82	3.42
571	572	0.591741	GACGTAGATTCCTGCCGTCG	60.592	60.000	0.00	0.00	37.89	5.12
589	590	0.679960	TCGTCAATCTGGAGCTCCGA	60.680	55.000	27.43	25.12	39.43	4.55
629	643	4.154375	GCTCTAACTACACAGGCCTTTTTC	59.846	45.833	0.00	0.00	0.00	2.29
635	649	2.432510	AGATGCTCTAACTACACAGGCC	59.567	50.000	0.00	0.00	0.00	5.19
670	684	2.947652	CAAGCTGGATCATCGGATTTGT	59.052	45.455	0.00	0.00	32.67	2.83
704	718	1.690219	CGGCACCAGAGCTAGGGATT	61.690	60.000	9.99	0.00	34.17	3.01
854	875	6.263392	GCTCAGGTAGTGTAGATATCAAGACA	59.737	42.308	5.32	3.41	0.00	3.41
962	1006	7.042590	TCGACTAGAGTTCGAATCATTCTAGAC	60.043	40.741	27.32	23.07	39.64	2.59
963	1007	6.985059	TCGACTAGAGTTCGAATCATTCTAGA	59.015	38.462	27.32	14.39	39.64	2.43
964	1008	7.067116	GTCGACTAGAGTTCGAATCATTCTAG	58.933	42.308	23.11	23.11	41.81	2.43
965	1009	6.537660	TGTCGACTAGAGTTCGAATCATTCTA	59.462	38.462	17.92	6.35	37.64	2.10
966	1010	5.354513	TGTCGACTAGAGTTCGAATCATTCT	59.645	40.000	17.92	5.50	37.64	2.40
967	1011	5.570344	TGTCGACTAGAGTTCGAATCATTC	58.430	41.667	17.92	0.00	37.64	2.67
968	1012	5.562506	TGTCGACTAGAGTTCGAATCATT	57.437	39.130	17.92	0.00	37.64	2.57
969	1013	5.759506	ATGTCGACTAGAGTTCGAATCAT	57.240	39.130	17.92	4.17	37.64	2.45
970	1014	5.106277	ACAATGTCGACTAGAGTTCGAATCA	60.106	40.000	17.92	2.20	37.64	2.57
971	1015	5.333513	ACAATGTCGACTAGAGTTCGAATC	58.666	41.667	17.92	0.15	37.64	2.52
972	1016	5.124138	AGACAATGTCGACTAGAGTTCGAAT	59.876	40.000	17.92	0.00	37.67	3.34
973	1017	4.454847	AGACAATGTCGACTAGAGTTCGAA	59.545	41.667	17.92	0.00	37.67	3.71
974	1018	4.001652	AGACAATGTCGACTAGAGTTCGA	58.998	43.478	17.92	0.00	37.67	3.71
975	1019	4.343811	AGACAATGTCGACTAGAGTTCG	57.656	45.455	17.92	0.00	37.67	3.95
976	1020	6.665474	TCTAGACAATGTCGACTAGAGTTC	57.335	41.667	17.92	5.82	36.03	3.01
977	1021	7.337184	TCATTCTAGACAATGTCGACTAGAGTT	59.663	37.037	17.92	3.63	39.98	3.01
978	1022	6.824196	TCATTCTAGACAATGTCGACTAGAGT	59.176	38.462	17.92	9.94	39.98	3.24
979	1023	7.252965	TCATTCTAGACAATGTCGACTAGAG	57.747	40.000	17.92	6.71	39.98	2.43
980	1024	7.809546	ATCATTCTAGACAATGTCGACTAGA	57.190	36.000	17.92	11.13	38.12	2.43
981	1025	7.322461	CGAATCATTCTAGACAATGTCGACTAG	59.678	40.741	17.92	8.89	35.68	2.57
982	1026	7.012044	TCGAATCATTCTAGACAATGTCGACTA	59.988	37.037	17.92	3.52	36.83	2.59
983	1027	5.974158	CGAATCATTCTAGACAATGTCGACT	59.026	40.000	17.92	0.00	35.68	4.18
984	1028	5.971792	TCGAATCATTCTAGACAATGTCGAC	59.028	40.000	9.11	9.11	36.83	4.20
985	1029	6.131544	TCGAATCATTCTAGACAATGTCGA	57.868	37.500	7.83	12.56	38.20	4.20
986	1030	6.473778	AGTTCGAATCATTCTAGACAATGTCG	59.526	38.462	7.83	9.52	37.67	4.35
987	1031	7.704472	AGAGTTCGAATCATTCTAGACAATGTC	59.296	37.037	5.02	5.02	35.56	3.06
988	1032	7.551585	AGAGTTCGAATCATTCTAGACAATGT	58.448	34.615	0.00	0.00	35.56	2.71
989	1033	9.179552	CTAGAGTTCGAATCATTCTAGACAATG	57.820	37.037	21.71	0.00	39.64	2.82
990	1034	8.908903	ACTAGAGTTCGAATCATTCTAGACAAT	58.091	33.333	27.32	14.04	39.64	2.71
991	1035	8.282455	ACTAGAGTTCGAATCATTCTAGACAA	57.718	34.615	27.32	7.81	39.64	3.18
992	1036	7.553044	TGACTAGAGTTCGAATCATTCTAGACA	59.447	37.037	27.32	25.11	39.64	3.41
1018	1093	5.047802	CCATAACAAGTTCAGCTCCAATGTT	60.048	40.000	6.64	6.64	34.31	2.71
1070	1145	3.128764	AGACACGACATCGACATACATGT	59.871	43.478	8.54	2.69	45.16	3.21
1255	1330	3.033659	AGGGGACAGATACGAAGTCAT	57.966	47.619	0.00	0.00	43.93	3.06
1606	1723	6.430451	GTGATTATTAGTGGCCGAAAGAATG	58.570	40.000	8.57	0.00	0.00	2.67
1842	1961	7.664082	AATAATCACATAGCAGATGTAGCAC	57.336	36.000	4.14	0.00	0.00	4.40
1879	1998	3.442625	AGCAACGGGAAAGTAAATAAGCC	59.557	43.478	0.00	0.00	0.00	4.35
1903	2022	7.786178	TGGTATTTTGTAGTGATGATAGCAC	57.214	36.000	0.00	0.00	36.53	4.40
1932	2051	9.559732	AAAAGGTAACGGTAGTAAAAGTAATGT	57.440	29.630	0.00	0.00	46.39	2.71
1954	2073	7.814107	TGATAGTAGTGGTAACGGTAACAAAAG	59.186	37.037	0.00	0.00	42.51	2.27
2071	2190	0.609131	CGACACAAGGGGAGCCAAAT	60.609	55.000	0.00	0.00	0.00	2.32
2177	2296	1.522092	CTATGCTCCCTGGCAACGA	59.478	57.895	0.00	0.00	45.68	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.