Multiple sequence alignment - TraesCS7A01G432900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G432900 chr7A 100.000 3590 0 0 1 3590 626887113 626883524 0.000000e+00 6630.0
1 TraesCS7A01G432900 chr7A 80.620 129 24 1 1614 1742 465377046 465377173 8.200000e-17 99.0
2 TraesCS7A01G432900 chr7D 91.178 1553 82 28 792 2332 544999050 544997541 0.000000e+00 2058.0
3 TraesCS7A01G432900 chr7D 85.167 836 49 32 2659 3451 544997072 544996269 0.000000e+00 787.0
4 TraesCS7A01G432900 chr7D 92.082 341 15 5 2328 2657 544997454 544997115 1.510000e-128 470.0
5 TraesCS7A01G432900 chr7D 85.551 263 12 6 457 717 544999615 544999377 5.950000e-63 252.0
6 TraesCS7A01G432900 chr7D 95.495 111 4 1 3431 3541 544996258 544996149 3.680000e-40 176.0
7 TraesCS7A01G432900 chr7D 81.897 116 17 4 1904 2017 461091957 461092070 1.060000e-15 95.3
8 TraesCS7A01G432900 chr7B 94.207 794 27 11 1550 2335 588383514 588382732 0.000000e+00 1194.0
9 TraesCS7A01G432900 chr7B 88.388 999 42 29 491 1460 588384945 588383992 0.000000e+00 1134.0
10 TraesCS7A01G432900 chr7B 89.155 710 34 15 2876 3557 588382133 588381439 0.000000e+00 845.0
11 TraesCS7A01G432900 chr7B 87.844 436 28 6 2371 2785 588382591 588382160 4.170000e-134 488.0
12 TraesCS7A01G432900 chr7B 81.897 116 17 4 1904 2017 483533501 483533614 1.060000e-15 95.3
13 TraesCS7A01G432900 chr2B 82.625 259 37 8 1216 1470 729136366 729136112 4.670000e-54 222.0
14 TraesCS7A01G432900 chr2B 89.928 139 14 0 1904 2042 729135555 729135417 2.850000e-41 180.0
15 TraesCS7A01G432900 chr2B 76.923 325 55 15 1593 1906 729136012 729135697 2.220000e-37 167.0
16 TraesCS7A01G432900 chr2A 82.558 258 39 6 1216 1470 733518664 733518410 4.670000e-54 222.0
17 TraesCS7A01G432900 chr2A 89.928 139 14 0 1904 2042 733517886 733517748 2.850000e-41 180.0
18 TraesCS7A01G432900 chr2A 76.453 327 57 18 1593 1906 733518316 733517997 3.710000e-35 159.0
19 TraesCS7A01G432900 chr2D 91.367 139 12 0 1904 2042 599790258 599790120 1.320000e-44 191.0
20 TraesCS7A01G432900 chr2D 84.768 151 21 2 1593 1742 599790732 599790583 2.230000e-32 150.0
21 TraesCS7A01G432900 chr4A 78.469 209 35 8 1264 1470 705377251 705377051 1.050000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G432900 chr7A 626883524 626887113 3589 True 6630.00 6630 100.0000 1 3590 1 chr7A.!!$R1 3589
1 TraesCS7A01G432900 chr7D 544996149 544999615 3466 True 748.60 2058 89.8946 457 3541 5 chr7D.!!$R1 3084
2 TraesCS7A01G432900 chr7B 588381439 588384945 3506 True 915.25 1194 89.8985 491 3557 4 chr7B.!!$R1 3066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.033601 AAGTCCAGCCACACACCAAA 60.034 50.0 0.0 0.0 0.00 3.28 F
157 158 0.033601 AGTCCAGCCACACACCAAAA 60.034 50.0 0.0 0.0 0.00 2.44 F
352 353 0.035056 ACTCCATCTTTTGGCCGAGG 60.035 55.0 0.0 0.0 46.01 4.63 F
890 1187 0.042731 TCCCTCCACTTCCTTCCGAT 59.957 55.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 2492 0.730834 CGATCGACGATGGAGATGCC 60.731 60.000 16.49 0.0 45.77 4.40 R
2049 2793 0.948678 AATGTTTGGTCGGTCGGTTG 59.051 50.000 0.00 0.0 0.00 3.77 R
2175 2919 3.708220 CTCCGTCTTGCCCTCGCTC 62.708 68.421 0.00 0.0 35.36 5.03 R
2873 3809 0.186386 CAAGTACCCAACCCAACCCA 59.814 55.000 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.812481 AAAATTCAAGTCTTTCAAGCGAAC 57.188 33.333 0.00 0.00 0.00 3.95
39 40 3.585748 TTCAAGTCTTTCAAGCGAACG 57.414 42.857 0.00 0.00 0.00 3.95
40 41 1.864711 TCAAGTCTTTCAAGCGAACGG 59.135 47.619 0.00 0.00 0.00 4.44
41 42 1.597663 CAAGTCTTTCAAGCGAACGGT 59.402 47.619 0.00 0.00 0.00 4.83
42 43 1.949465 AGTCTTTCAAGCGAACGGTT 58.051 45.000 5.84 5.84 36.13 4.44
56 57 2.676471 GGTTGACGCTGGCCCATT 60.676 61.111 0.00 0.00 0.00 3.16
57 58 2.275380 GGTTGACGCTGGCCCATTT 61.275 57.895 0.00 0.00 0.00 2.32
58 59 0.963355 GGTTGACGCTGGCCCATTTA 60.963 55.000 0.00 0.00 0.00 1.40
59 60 0.885196 GTTGACGCTGGCCCATTTAA 59.115 50.000 0.00 0.00 0.00 1.52
60 61 1.271102 GTTGACGCTGGCCCATTTAAA 59.729 47.619 0.00 0.00 0.00 1.52
61 62 0.885196 TGACGCTGGCCCATTTAAAC 59.115 50.000 0.00 0.00 0.00 2.01
62 63 0.172578 GACGCTGGCCCATTTAAACC 59.827 55.000 0.00 0.00 0.00 3.27
63 64 0.540830 ACGCTGGCCCATTTAAACCA 60.541 50.000 0.00 0.00 0.00 3.67
64 65 0.823460 CGCTGGCCCATTTAAACCAT 59.177 50.000 0.00 0.00 0.00 3.55
65 66 1.471327 CGCTGGCCCATTTAAACCATG 60.471 52.381 0.00 0.00 0.00 3.66
66 67 1.134431 GCTGGCCCATTTAAACCATGG 60.134 52.381 11.19 11.19 41.02 3.66
71 72 1.577736 CCATTTAAACCATGGGCCCA 58.422 50.000 30.92 30.92 38.05 5.36
72 73 1.485895 CCATTTAAACCATGGGCCCAG 59.514 52.381 31.97 20.41 38.05 4.45
73 74 1.485895 CATTTAAACCATGGGCCCAGG 59.514 52.381 31.97 30.91 0.00 4.45
74 75 0.907230 TTTAAACCATGGGCCCAGGC 60.907 55.000 31.35 0.00 41.06 4.85
75 76 2.099251 TTAAACCATGGGCCCAGGCA 62.099 55.000 31.35 16.16 44.11 4.75
76 77 2.796734 TAAACCATGGGCCCAGGCAC 62.797 60.000 31.35 7.66 46.35 5.01
85 86 4.394712 CCCAGGCACCGTCAGTCC 62.395 72.222 0.00 0.00 0.00 3.85
86 87 3.314331 CCAGGCACCGTCAGTCCT 61.314 66.667 0.00 0.00 0.00 3.85
87 88 2.047844 CAGGCACCGTCAGTCCTG 60.048 66.667 0.00 0.00 37.41 3.86
88 89 4.008933 AGGCACCGTCAGTCCTGC 62.009 66.667 0.00 0.00 0.00 4.85
90 91 4.008933 GCACCGTCAGTCCTGCCT 62.009 66.667 0.00 0.00 0.00 4.75
91 92 2.262915 CACCGTCAGTCCTGCCTC 59.737 66.667 0.00 0.00 0.00 4.70
92 93 3.374402 ACCGTCAGTCCTGCCTCG 61.374 66.667 0.00 0.00 0.00 4.63
93 94 3.062466 CCGTCAGTCCTGCCTCGA 61.062 66.667 7.51 0.00 0.00 4.04
94 95 2.487428 CGTCAGTCCTGCCTCGAG 59.513 66.667 5.13 5.13 0.00 4.04
95 96 2.183046 GTCAGTCCTGCCTCGAGC 59.817 66.667 6.99 3.23 44.14 5.03
104 105 2.899339 GCCTCGAGCAAGATGGGC 60.899 66.667 6.99 0.00 42.97 5.36
105 106 2.203126 CCTCGAGCAAGATGGGCC 60.203 66.667 6.99 0.00 0.00 5.80
106 107 2.587194 CTCGAGCAAGATGGGCCG 60.587 66.667 0.00 0.00 0.00 6.13
107 108 4.161295 TCGAGCAAGATGGGCCGG 62.161 66.667 0.00 0.00 0.00 6.13
135 136 3.818787 CATGCGGCTCAGGGCAAC 61.819 66.667 0.00 0.00 43.26 4.17
139 140 3.121030 CGGCTCAGGGCAACGAAG 61.121 66.667 0.00 0.00 44.01 3.79
140 141 2.032681 GGCTCAGGGCAACGAAGT 59.967 61.111 0.00 0.00 44.01 3.01
141 142 2.035442 GGCTCAGGGCAACGAAGTC 61.035 63.158 0.00 0.00 44.01 3.01
142 143 2.035442 GCTCAGGGCAACGAAGTCC 61.035 63.158 0.00 0.00 45.00 3.85
143 144 1.371183 CTCAGGGCAACGAAGTCCA 59.629 57.895 5.40 0.00 45.00 4.02
144 145 0.671781 CTCAGGGCAACGAAGTCCAG 60.672 60.000 5.40 0.00 45.00 3.86
145 146 2.032681 AGGGCAACGAAGTCCAGC 59.967 61.111 5.40 0.00 45.00 4.85
146 147 3.056328 GGGCAACGAAGTCCAGCC 61.056 66.667 0.00 0.00 45.00 4.85
148 149 2.946762 GCAACGAAGTCCAGCCAC 59.053 61.111 0.00 0.00 45.00 5.01
149 150 1.891919 GCAACGAAGTCCAGCCACA 60.892 57.895 0.00 0.00 45.00 4.17
150 151 1.941812 CAACGAAGTCCAGCCACAC 59.058 57.895 0.00 0.00 45.00 3.82
151 152 0.813610 CAACGAAGTCCAGCCACACA 60.814 55.000 0.00 0.00 45.00 3.72
152 153 0.814010 AACGAAGTCCAGCCACACAC 60.814 55.000 0.00 0.00 45.00 3.82
153 154 1.961277 CGAAGTCCAGCCACACACC 60.961 63.158 0.00 0.00 0.00 4.16
154 155 1.148273 GAAGTCCAGCCACACACCA 59.852 57.895 0.00 0.00 0.00 4.17
155 156 0.465460 GAAGTCCAGCCACACACCAA 60.465 55.000 0.00 0.00 0.00 3.67
156 157 0.033601 AAGTCCAGCCACACACCAAA 60.034 50.000 0.00 0.00 0.00 3.28
157 158 0.033601 AGTCCAGCCACACACCAAAA 60.034 50.000 0.00 0.00 0.00 2.44
158 159 0.820871 GTCCAGCCACACACCAAAAA 59.179 50.000 0.00 0.00 0.00 1.94
194 195 6.541111 AACTGCCTTAGAAGTTAAAACTCG 57.459 37.500 0.00 0.00 38.57 4.18
195 196 5.850614 ACTGCCTTAGAAGTTAAAACTCGA 58.149 37.500 0.00 0.00 38.57 4.04
196 197 6.285990 ACTGCCTTAGAAGTTAAAACTCGAA 58.714 36.000 0.00 0.00 38.57 3.71
197 198 6.764560 ACTGCCTTAGAAGTTAAAACTCGAAA 59.235 34.615 0.00 0.00 38.57 3.46
198 199 7.281549 ACTGCCTTAGAAGTTAAAACTCGAAAA 59.718 33.333 0.00 0.00 38.57 2.29
199 200 7.987649 TGCCTTAGAAGTTAAAACTCGAAAAA 58.012 30.769 0.00 0.00 38.57 1.94
215 216 3.753774 AAAAAGACATGCAGACGCG 57.246 47.368 3.53 3.53 42.97 6.01
216 217 0.385974 AAAAAGACATGCAGACGCGC 60.386 50.000 5.73 0.00 42.97 6.86
217 218 2.498761 AAAAGACATGCAGACGCGCG 62.499 55.000 30.96 30.96 42.97 6.86
227 228 4.322385 GACGCGCGCCAACCTTTT 62.322 61.111 32.58 6.59 0.00 2.27
228 229 4.322385 ACGCGCGCCAACCTTTTC 62.322 61.111 32.58 0.00 0.00 2.29
229 230 4.025401 CGCGCGCCAACCTTTTCT 62.025 61.111 27.72 0.00 0.00 2.52
230 231 2.335011 GCGCGCCAACCTTTTCTT 59.665 55.556 23.24 0.00 0.00 2.52
231 232 2.016165 GCGCGCCAACCTTTTCTTG 61.016 57.895 23.24 0.00 0.00 3.02
232 233 1.371635 CGCGCCAACCTTTTCTTGG 60.372 57.895 0.00 0.00 41.17 3.61
233 234 1.739667 GCGCCAACCTTTTCTTGGT 59.260 52.632 0.00 0.00 40.46 3.67
239 240 2.863401 AACCTTTTCTTGGTTGCGAC 57.137 45.000 0.00 0.00 45.10 5.19
240 241 0.661020 ACCTTTTCTTGGTTGCGACG 59.339 50.000 0.00 0.00 33.34 5.12
241 242 0.040425 CCTTTTCTTGGTTGCGACGG 60.040 55.000 0.00 0.00 0.00 4.79
242 243 0.660300 CTTTTCTTGGTTGCGACGGC 60.660 55.000 0.00 0.00 40.52 5.68
243 244 2.381665 TTTTCTTGGTTGCGACGGCG 62.382 55.000 6.12 6.12 44.10 6.46
266 267 4.541482 GCACGTACGGGCGATCGA 62.541 66.667 28.68 0.00 33.65 3.59
267 268 2.649975 CACGTACGGGCGATCGAC 60.650 66.667 21.57 18.00 35.59 4.20
268 269 3.126879 ACGTACGGGCGATCGACA 61.127 61.111 24.83 0.00 35.59 4.35
269 270 2.100797 CGTACGGGCGATCGACAA 59.899 61.111 24.83 4.31 0.00 3.18
270 271 1.937846 CGTACGGGCGATCGACAAG 60.938 63.158 24.83 18.37 0.00 3.16
271 272 1.588139 GTACGGGCGATCGACAAGG 60.588 63.158 24.83 13.73 0.00 3.61
272 273 1.750018 TACGGGCGATCGACAAGGA 60.750 57.895 24.83 10.21 0.00 3.36
273 274 1.996786 TACGGGCGATCGACAAGGAC 61.997 60.000 24.83 3.36 0.00 3.85
274 275 2.582498 GGGCGATCGACAAGGACG 60.582 66.667 24.83 0.00 0.00 4.79
275 276 3.255379 GGCGATCGACAAGGACGC 61.255 66.667 21.57 0.00 46.79 5.19
276 277 2.506217 GCGATCGACAAGGACGCA 60.506 61.111 21.57 0.00 46.75 5.24
277 278 2.789203 GCGATCGACAAGGACGCAC 61.789 63.158 21.57 0.00 46.75 5.34
278 279 1.154016 CGATCGACAAGGACGCACT 60.154 57.895 10.26 0.00 0.00 4.40
279 280 0.732880 CGATCGACAAGGACGCACTT 60.733 55.000 10.26 0.00 0.00 3.16
280 281 1.429463 GATCGACAAGGACGCACTTT 58.571 50.000 0.00 0.00 0.00 2.66
281 282 1.126846 GATCGACAAGGACGCACTTTG 59.873 52.381 0.00 4.13 40.64 2.77
282 283 0.103390 TCGACAAGGACGCACTTTGA 59.897 50.000 10.86 0.00 38.64 2.69
283 284 0.232303 CGACAAGGACGCACTTTGAC 59.768 55.000 10.86 5.22 38.64 3.18
284 285 1.295792 GACAAGGACGCACTTTGACA 58.704 50.000 10.86 0.00 38.64 3.58
285 286 1.668751 GACAAGGACGCACTTTGACAA 59.331 47.619 10.86 0.00 38.64 3.18
286 287 2.088423 ACAAGGACGCACTTTGACAAA 58.912 42.857 10.86 0.00 38.64 2.83
287 288 2.097466 ACAAGGACGCACTTTGACAAAG 59.903 45.455 23.41 23.41 44.10 2.77
288 289 1.308998 AGGACGCACTTTGACAAAGG 58.691 50.000 27.26 18.33 42.82 3.11
289 290 0.310854 GGACGCACTTTGACAAAGGG 59.689 55.000 27.26 25.40 44.81 3.95
290 291 1.305201 GACGCACTTTGACAAAGGGA 58.695 50.000 30.09 0.00 44.81 4.20
291 292 1.880027 GACGCACTTTGACAAAGGGAT 59.120 47.619 30.09 18.40 44.81 3.85
292 293 1.608590 ACGCACTTTGACAAAGGGATG 59.391 47.619 30.09 22.76 44.81 3.51
293 294 1.666888 CGCACTTTGACAAAGGGATGC 60.667 52.381 30.09 25.86 44.81 3.91
294 295 1.340889 GCACTTTGACAAAGGGATGCA 59.659 47.619 30.09 0.00 44.81 3.96
295 296 2.608752 GCACTTTGACAAAGGGATGCAG 60.609 50.000 30.09 12.42 44.81 4.41
296 297 1.615392 ACTTTGACAAAGGGATGCAGC 59.385 47.619 27.26 0.00 42.82 5.25
297 298 1.891150 CTTTGACAAAGGGATGCAGCT 59.109 47.619 18.52 0.00 34.85 4.24
298 299 2.877097 TTGACAAAGGGATGCAGCTA 57.123 45.000 0.22 0.00 0.00 3.32
299 300 2.408271 TGACAAAGGGATGCAGCTAG 57.592 50.000 0.22 0.00 0.00 3.42
300 301 1.020437 GACAAAGGGATGCAGCTAGC 58.980 55.000 6.62 6.62 45.96 3.42
316 317 4.447365 GCACAAGCGCTCAACATC 57.553 55.556 12.06 0.00 0.00 3.06
317 318 1.575922 GCACAAGCGCTCAACATCA 59.424 52.632 12.06 0.00 0.00 3.07
318 319 0.040157 GCACAAGCGCTCAACATCAA 60.040 50.000 12.06 0.00 0.00 2.57
319 320 1.678360 CACAAGCGCTCAACATCAAC 58.322 50.000 12.06 0.00 0.00 3.18
320 321 0.593128 ACAAGCGCTCAACATCAACC 59.407 50.000 12.06 0.00 0.00 3.77
321 322 0.453282 CAAGCGCTCAACATCAACCG 60.453 55.000 12.06 0.00 0.00 4.44
322 323 2.187599 AAGCGCTCAACATCAACCGC 62.188 55.000 12.06 0.00 41.51 5.68
323 324 2.096406 CGCTCAACATCAACCGCG 59.904 61.111 0.00 0.00 34.50 6.46
324 325 2.667318 CGCTCAACATCAACCGCGT 61.667 57.895 4.92 0.00 36.28 6.01
325 326 1.132640 GCTCAACATCAACCGCGTC 59.867 57.895 4.92 0.00 0.00 5.19
326 327 1.416049 CTCAACATCAACCGCGTCG 59.584 57.895 4.92 0.00 0.00 5.12
327 328 1.282248 CTCAACATCAACCGCGTCGT 61.282 55.000 4.92 0.00 0.00 4.34
328 329 0.876777 TCAACATCAACCGCGTCGTT 60.877 50.000 4.92 0.00 0.00 3.85
329 330 0.041663 CAACATCAACCGCGTCGTTT 60.042 50.000 4.92 0.00 0.00 3.60
330 331 0.658897 AACATCAACCGCGTCGTTTT 59.341 45.000 4.92 0.00 0.00 2.43
331 332 0.233848 ACATCAACCGCGTCGTTTTC 59.766 50.000 4.92 0.00 0.00 2.29
332 333 0.452122 CATCAACCGCGTCGTTTTCC 60.452 55.000 4.92 0.00 0.00 3.13
333 334 0.881159 ATCAACCGCGTCGTTTTCCA 60.881 50.000 4.92 0.00 0.00 3.53
334 335 1.368374 CAACCGCGTCGTTTTCCAC 60.368 57.895 4.92 0.00 0.00 4.02
335 336 1.522130 AACCGCGTCGTTTTCCACT 60.522 52.632 4.92 0.00 0.00 4.00
336 337 1.493134 AACCGCGTCGTTTTCCACTC 61.493 55.000 4.92 0.00 0.00 3.51
337 338 2.664436 CCGCGTCGTTTTCCACTCC 61.664 63.158 4.92 0.00 0.00 3.85
338 339 1.952133 CGCGTCGTTTTCCACTCCA 60.952 57.895 0.00 0.00 0.00 3.86
339 340 1.289109 CGCGTCGTTTTCCACTCCAT 61.289 55.000 0.00 0.00 0.00 3.41
340 341 0.442699 GCGTCGTTTTCCACTCCATC 59.557 55.000 0.00 0.00 0.00 3.51
341 342 1.939838 GCGTCGTTTTCCACTCCATCT 60.940 52.381 0.00 0.00 0.00 2.90
342 343 2.413837 CGTCGTTTTCCACTCCATCTT 58.586 47.619 0.00 0.00 0.00 2.40
343 344 2.806244 CGTCGTTTTCCACTCCATCTTT 59.194 45.455 0.00 0.00 0.00 2.52
344 345 3.250040 CGTCGTTTTCCACTCCATCTTTT 59.750 43.478 0.00 0.00 0.00 2.27
345 346 4.537015 GTCGTTTTCCACTCCATCTTTTG 58.463 43.478 0.00 0.00 0.00 2.44
347 348 3.653344 GTTTTCCACTCCATCTTTTGGC 58.347 45.455 0.00 0.00 46.01 4.52
348 349 1.923356 TTCCACTCCATCTTTTGGCC 58.077 50.000 0.00 0.00 46.01 5.36
349 350 0.322456 TCCACTCCATCTTTTGGCCG 60.322 55.000 0.00 0.00 46.01 6.13
350 351 0.322456 CCACTCCATCTTTTGGCCGA 60.322 55.000 0.00 0.00 46.01 5.54
351 352 1.089920 CACTCCATCTTTTGGCCGAG 58.910 55.000 0.00 0.00 46.01 4.63
352 353 0.035056 ACTCCATCTTTTGGCCGAGG 60.035 55.000 0.00 0.00 46.01 4.63
353 354 1.378514 TCCATCTTTTGGCCGAGGC 60.379 57.895 5.37 5.37 46.01 4.70
354 355 1.379044 CCATCTTTTGGCCGAGGCT 60.379 57.895 14.33 0.00 39.09 4.58
355 356 1.660560 CCATCTTTTGGCCGAGGCTG 61.661 60.000 14.33 2.33 39.09 4.85
356 357 1.379044 ATCTTTTGGCCGAGGCTGG 60.379 57.895 14.33 0.00 41.60 4.85
357 358 1.852157 ATCTTTTGGCCGAGGCTGGA 61.852 55.000 14.33 5.92 41.60 3.86
358 359 1.379044 CTTTTGGCCGAGGCTGGAT 60.379 57.895 14.33 0.00 41.60 3.41
359 360 1.660560 CTTTTGGCCGAGGCTGGATG 61.661 60.000 14.33 0.00 41.60 3.51
360 361 4.802051 TTGGCCGAGGCTGGATGC 62.802 66.667 14.33 0.00 41.60 3.91
370 371 1.434696 GCTGGATGCCCATTTGTCG 59.565 57.895 0.00 0.00 42.59 4.35
371 372 1.434696 CTGGATGCCCATTTGTCGC 59.565 57.895 0.00 0.00 42.59 5.19
372 373 2.008268 CTGGATGCCCATTTGTCGCC 62.008 60.000 0.00 0.00 42.59 5.54
373 374 2.408835 GATGCCCATTTGTCGCCG 59.591 61.111 0.00 0.00 0.00 6.46
374 375 3.124798 GATGCCCATTTGTCGCCGG 62.125 63.158 0.00 0.00 0.00 6.13
378 379 3.508840 CCATTTGTCGCCGGCCTC 61.509 66.667 23.46 14.83 0.00 4.70
379 380 2.745884 CATTTGTCGCCGGCCTCA 60.746 61.111 23.46 17.52 0.00 3.86
380 381 2.033448 ATTTGTCGCCGGCCTCAA 59.967 55.556 23.46 22.37 0.00 3.02
381 382 2.332654 ATTTGTCGCCGGCCTCAAC 61.333 57.895 23.46 14.58 0.00 3.18
402 403 4.465512 GACGTCGCGGCGGTAAGA 62.466 66.667 37.53 0.00 35.98 2.10
403 404 4.766088 ACGTCGCGGCGGTAAGAC 62.766 66.667 37.53 11.72 35.98 3.01
410 411 2.202756 GGCGGTAAGACGAGCTGG 60.203 66.667 0.00 0.00 35.47 4.85
411 412 2.886124 GCGGTAAGACGAGCTGGC 60.886 66.667 0.00 0.00 35.47 4.85
412 413 2.579787 CGGTAAGACGAGCTGGCG 60.580 66.667 0.00 0.00 35.47 5.69
413 414 2.202756 GGTAAGACGAGCTGGCGG 60.203 66.667 0.00 0.00 35.12 6.13
414 415 2.886124 GTAAGACGAGCTGGCGGC 60.886 66.667 11.19 11.19 40.32 6.53
433 434 3.694394 CGTACCGTGCGTGCGTTT 61.694 61.111 0.27 0.00 44.52 3.60
434 435 2.127906 GTACCGTGCGTGCGTTTG 60.128 61.111 0.00 0.00 0.00 2.93
435 436 4.003011 TACCGTGCGTGCGTTTGC 62.003 61.111 0.00 0.00 43.20 3.68
446 447 4.389576 CGTTTGCGCACTGGAGCC 62.390 66.667 11.12 0.00 39.30 4.70
447 448 4.389576 GTTTGCGCACTGGAGCCG 62.390 66.667 11.12 0.00 39.30 5.52
488 489 2.640302 GGCGGCAGTCACAGAGAGA 61.640 63.158 3.07 0.00 0.00 3.10
489 490 1.153862 GCGGCAGTCACAGAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
491 492 0.962855 CGGCAGTCACAGAGAGAGGA 60.963 60.000 0.00 0.00 0.00 3.71
492 493 1.261480 GGCAGTCACAGAGAGAGGAA 58.739 55.000 0.00 0.00 0.00 3.36
493 494 1.204467 GGCAGTCACAGAGAGAGGAAG 59.796 57.143 0.00 0.00 0.00 3.46
494 495 1.404047 GCAGTCACAGAGAGAGGAAGC 60.404 57.143 0.00 0.00 0.00 3.86
495 496 1.891811 CAGTCACAGAGAGAGGAAGCA 59.108 52.381 0.00 0.00 0.00 3.91
496 497 2.094597 CAGTCACAGAGAGAGGAAGCAG 60.095 54.545 0.00 0.00 0.00 4.24
497 498 2.166829 GTCACAGAGAGAGGAAGCAGA 58.833 52.381 0.00 0.00 0.00 4.26
498 499 2.560542 GTCACAGAGAGAGGAAGCAGAA 59.439 50.000 0.00 0.00 0.00 3.02
588 596 3.122727 TTGCCCTCCCGTTCCGTTT 62.123 57.895 0.00 0.00 0.00 3.60
602 610 4.397832 GTTTCACCCGCCCGCCTA 62.398 66.667 0.00 0.00 0.00 3.93
620 628 0.333993 TAGGCCTGGGTAGACTCGTT 59.666 55.000 17.99 0.00 0.00 3.85
653 661 3.360340 GGTGTCACTGCTGCTGCC 61.360 66.667 13.47 0.00 38.71 4.85
674 682 4.962836 GCTGCTGGTGGTGTGGCT 62.963 66.667 0.00 0.00 0.00 4.75
675 683 2.981909 CTGCTGGTGGTGTGGCTG 60.982 66.667 0.00 0.00 0.00 4.85
869 1166 1.429463 CACTTCCTACACCACTTCGC 58.571 55.000 0.00 0.00 0.00 4.70
888 1185 1.617947 CCTCCCTCCACTTCCTTCCG 61.618 65.000 0.00 0.00 0.00 4.30
889 1186 0.614979 CTCCCTCCACTTCCTTCCGA 60.615 60.000 0.00 0.00 0.00 4.55
890 1187 0.042731 TCCCTCCACTTCCTTCCGAT 59.957 55.000 0.00 0.00 0.00 4.18
893 1190 0.466124 CTCCACTTCCTTCCGATCCC 59.534 60.000 0.00 0.00 0.00 3.85
897 1202 1.834263 CACTTCCTTCCGATCCCTCTT 59.166 52.381 0.00 0.00 0.00 2.85
898 1203 2.112190 ACTTCCTTCCGATCCCTCTTC 58.888 52.381 0.00 0.00 0.00 2.87
920 1225 2.757917 GAGACCAGAGCTCGCCCT 60.758 66.667 8.37 4.40 0.00 5.19
926 1231 4.779966 AGAGCTCGCCCTCGTCGA 62.780 66.667 8.37 0.00 36.95 4.20
958 1275 2.359107 CTCAGCCAAGAAGCCGCA 60.359 61.111 0.00 0.00 0.00 5.69
960 1277 4.093952 CAGCCAAGAAGCCGCACG 62.094 66.667 0.00 0.00 0.00 5.34
1062 1379 3.898509 CTGCTCTCCCTCTCGCCG 61.899 72.222 0.00 0.00 0.00 6.46
1485 1802 2.566010 GGTACGTCACGCCCGTAA 59.434 61.111 0.00 0.00 41.88 3.18
1486 1803 1.801512 GGTACGTCACGCCCGTAAC 60.802 63.158 0.00 2.96 41.88 2.50
1487 1804 2.145905 GTACGTCACGCCCGTAACG 61.146 63.158 14.24 14.24 44.58 3.18
1488 1805 3.321315 TACGTCACGCCCGTAACGG 62.321 63.158 19.10 0.00 43.44 4.44
1516 2241 1.226945 GCACCACGGCCATTAATGC 60.227 57.895 10.11 1.36 0.00 3.56
1536 2261 5.273674 TGCCAACAATGTTTCTTGAATGA 57.726 34.783 0.00 0.00 0.00 2.57
1538 2263 5.523188 TGCCAACAATGTTTCTTGAATGAAC 59.477 36.000 0.00 0.00 0.00 3.18
1546 2271 2.178912 TCTTGAATGAACCGTGGGTC 57.821 50.000 0.00 0.00 33.12 4.46
1576 2301 3.317993 TGATGAATGAATGCATGCTCAGG 59.682 43.478 20.33 0.00 34.26 3.86
1757 2492 2.807045 GTCAGTCACTCAGCCGCG 60.807 66.667 0.00 0.00 0.00 6.46
1817 2552 1.745115 GCAGCCCTGACGCATGTAA 60.745 57.895 0.00 0.00 0.00 2.41
1818 2553 1.982073 GCAGCCCTGACGCATGTAAC 61.982 60.000 0.00 0.00 0.00 2.50
2131 2875 5.728965 CAGCGCACGTTCGTTAATTAATTAA 59.271 36.000 15.19 15.19 0.00 1.40
2155 2899 3.837213 ATCTTGTCCAAACAATGCGAG 57.163 42.857 0.00 0.00 44.18 5.03
2215 2959 2.764128 TGCTGGACCCGAGGATCC 60.764 66.667 2.48 2.48 35.37 3.36
2344 3214 5.011586 AGGTAAGCTTAATTTGCGGGTAAA 58.988 37.500 7.99 0.00 35.28 2.01
2345 3215 5.477637 AGGTAAGCTTAATTTGCGGGTAAAA 59.522 36.000 7.99 0.00 35.28 1.52
2346 3216 5.803461 GGTAAGCTTAATTTGCGGGTAAAAG 59.197 40.000 7.99 0.00 35.28 2.27
2359 3229 3.368495 GGGTAAAAGCAACGTTGACAAG 58.632 45.455 31.62 5.25 0.00 3.16
2380 3250 4.708601 AGTTGAAAATGTATGCGACGAAC 58.291 39.130 0.00 0.00 0.00 3.95
2424 3294 1.228657 GCAACGAACAGGTCCTGGAC 61.229 60.000 23.06 18.65 35.51 4.02
2447 3317 4.593864 GGAGGGCGCGGAGATCAC 62.594 72.222 8.83 0.00 0.00 3.06
2574 3450 0.949105 CCCCTTTGTCAACGTCCTCG 60.949 60.000 0.00 0.00 43.34 4.63
2611 3492 1.154205 CGGGCTAAGATTGCGTGAGG 61.154 60.000 0.00 0.00 0.00 3.86
2631 3512 1.690283 CGACCGTGATGCTTGCTGAG 61.690 60.000 0.00 0.00 0.00 3.35
2737 3662 1.076533 GTATGCTGACCACGACACGG 61.077 60.000 0.00 0.00 0.00 4.94
2742 3667 4.712425 GACCACGACACGGACGGG 62.712 72.222 0.00 0.00 34.93 5.28
2748 3673 1.214589 CGACACGGACGGGAAAGAT 59.785 57.895 0.00 0.00 0.00 2.40
2749 3674 1.076533 CGACACGGACGGGAAAGATG 61.077 60.000 0.00 0.00 0.00 2.90
2750 3675 0.739813 GACACGGACGGGAAAGATGG 60.740 60.000 0.00 0.00 0.00 3.51
2751 3676 1.295423 CACGGACGGGAAAGATGGT 59.705 57.895 0.00 0.00 0.00 3.55
2758 3683 1.026718 CGGGAAAGATGGTGGTGCTC 61.027 60.000 0.00 0.00 0.00 4.26
2768 3693 3.725459 TGGTGCTCGCGTGCAATG 61.725 61.111 34.13 7.42 45.12 2.82
2786 3711 3.312709 GCGTAATGCAAAGCAGACC 57.687 52.632 0.00 0.00 43.65 3.85
2804 3729 1.674322 CGAGGGTTTTGTCGGGCAT 60.674 57.895 0.00 0.00 32.40 4.40
2807 3732 1.906333 GGGTTTTGTCGGGCATGGT 60.906 57.895 0.00 0.00 0.00 3.55
2808 3733 1.468506 GGGTTTTGTCGGGCATGGTT 61.469 55.000 0.00 0.00 0.00 3.67
2809 3734 0.038618 GGTTTTGTCGGGCATGGTTC 60.039 55.000 0.00 0.00 0.00 3.62
2854 3779 1.078143 GCCTGCCCTACCAAGAGTG 60.078 63.158 0.00 0.00 0.00 3.51
2870 3806 3.390521 TGGTACCTGGCTGCTCCG 61.391 66.667 14.36 0.00 37.80 4.63
2871 3807 4.162690 GGTACCTGGCTGCTCCGG 62.163 72.222 4.06 0.00 41.11 5.14
2872 3808 3.391382 GTACCTGGCTGCTCCGGT 61.391 66.667 0.00 6.45 41.98 5.28
2873 3809 2.606519 TACCTGGCTGCTCCGGTT 60.607 61.111 0.00 0.28 40.51 4.44
2874 3810 2.954684 TACCTGGCTGCTCCGGTTG 61.955 63.158 0.00 0.00 40.51 3.77
2941 3877 0.248458 GTTCGTTGTTGCCAGGTGTG 60.248 55.000 0.00 0.00 0.00 3.82
2963 3899 2.479730 CGTGCCGCTTTCAGTATACTCT 60.480 50.000 1.26 0.00 0.00 3.24
2965 3901 4.043073 GTGCCGCTTTCAGTATACTCTAC 58.957 47.826 1.26 0.00 0.00 2.59
2966 3902 3.952323 TGCCGCTTTCAGTATACTCTACT 59.048 43.478 1.26 0.00 0.00 2.57
2984 3920 1.148157 CTCTGGTAGCGCATTCGTGG 61.148 60.000 11.47 0.00 38.14 4.94
3045 3989 2.674380 GGTTGAGCTGTGCCCCTG 60.674 66.667 0.00 0.00 0.00 4.45
3128 4073 3.400054 GAGGGGAACAGGGACCGG 61.400 72.222 0.00 0.00 0.00 5.28
3163 4108 2.908940 AGTGTGGGCAAGTGCAGC 60.909 61.111 5.52 0.00 44.36 5.25
3169 4114 2.908940 GGCAAGTGCAGCAGGTGT 60.909 61.111 5.52 0.00 44.36 4.16
3170 4115 2.492773 GGCAAGTGCAGCAGGTGTT 61.493 57.895 5.52 0.00 44.36 3.32
3171 4116 1.008079 GCAAGTGCAGCAGGTGTTC 60.008 57.895 0.00 0.00 41.59 3.18
3172 4117 1.450531 GCAAGTGCAGCAGGTGTTCT 61.451 55.000 0.00 0.00 41.59 3.01
3173 4118 0.590195 CAAGTGCAGCAGGTGTTCTC 59.410 55.000 0.00 0.00 0.00 2.87
3209 4154 0.523072 CTTCCCATGCAAGGTGTTCG 59.477 55.000 7.29 0.00 0.00 3.95
3216 4161 1.581934 TGCAAGGTGTTCGTCTTCTG 58.418 50.000 0.00 0.00 0.00 3.02
3248 4196 7.435488 ACTTGCTTATCAGTAACATGTATCGAC 59.565 37.037 0.00 0.00 0.00 4.20
3282 4230 3.070748 GACAAGCAACCTCTTCCTTCTC 58.929 50.000 0.00 0.00 0.00 2.87
3284 4232 3.137360 ACAAGCAACCTCTTCCTTCTCTT 59.863 43.478 0.00 0.00 0.00 2.85
3285 4233 4.140536 CAAGCAACCTCTTCCTTCTCTTT 58.859 43.478 0.00 0.00 0.00 2.52
3286 4234 4.014569 AGCAACCTCTTCCTTCTCTTTC 57.985 45.455 0.00 0.00 0.00 2.62
3289 4237 4.824537 GCAACCTCTTCCTTCTCTTTCTTT 59.175 41.667 0.00 0.00 0.00 2.52
3290 4238 5.300539 GCAACCTCTTCCTTCTCTTTCTTTT 59.699 40.000 0.00 0.00 0.00 2.27
3291 4239 6.486993 GCAACCTCTTCCTTCTCTTTCTTTTA 59.513 38.462 0.00 0.00 0.00 1.52
3293 4241 9.072375 CAACCTCTTCCTTCTCTTTCTTTTATT 57.928 33.333 0.00 0.00 0.00 1.40
3383 4353 2.094659 CACGCACTGTCACCGGATC 61.095 63.158 9.46 0.00 0.00 3.36
3485 4487 3.943691 TCCACCCAAACCGGACGG 61.944 66.667 9.46 9.56 42.03 4.79
3528 4530 2.644992 GTTTTGGTGCTCCGCCAG 59.355 61.111 0.00 0.00 45.18 4.85
3529 4531 1.896660 GTTTTGGTGCTCCGCCAGA 60.897 57.895 0.00 0.00 45.18 3.86
3557 4559 2.164219 CTGGACTGAGCTCTGAACTCTC 59.836 54.545 25.49 12.52 35.12 3.20
3558 4560 1.132262 GGACTGAGCTCTGAACTCTCG 59.868 57.143 25.49 3.72 35.12 4.04
3559 4561 1.810151 GACTGAGCTCTGAACTCTCGT 59.190 52.381 25.49 6.49 35.12 4.18
3560 4562 1.810151 ACTGAGCTCTGAACTCTCGTC 59.190 52.381 25.49 0.00 35.12 4.20
3561 4563 2.083774 CTGAGCTCTGAACTCTCGTCT 58.916 52.381 16.19 0.00 35.12 4.18
3562 4564 1.809547 TGAGCTCTGAACTCTCGTCTG 59.190 52.381 16.19 0.00 35.12 3.51
3563 4565 2.080693 GAGCTCTGAACTCTCGTCTGA 58.919 52.381 6.43 0.00 0.00 3.27
3564 4566 1.810151 AGCTCTGAACTCTCGTCTGAC 59.190 52.381 0.00 0.00 0.00 3.51
3565 4567 1.537638 GCTCTGAACTCTCGTCTGACA 59.462 52.381 8.73 0.00 0.00 3.58
3566 4568 2.414029 GCTCTGAACTCTCGTCTGACAG 60.414 54.545 8.73 0.00 0.00 3.51
3567 4569 3.070748 CTCTGAACTCTCGTCTGACAGA 58.929 50.000 8.73 0.00 0.00 3.41
3568 4570 3.477530 TCTGAACTCTCGTCTGACAGAA 58.522 45.455 6.76 0.00 31.51 3.02
3569 4571 4.075682 TCTGAACTCTCGTCTGACAGAAT 58.924 43.478 6.76 0.00 31.51 2.40
3570 4572 5.246307 TCTGAACTCTCGTCTGACAGAATA 58.754 41.667 6.76 0.00 31.51 1.75
3571 4573 5.122554 TCTGAACTCTCGTCTGACAGAATAC 59.877 44.000 6.76 0.00 31.51 1.89
3572 4574 5.004448 TGAACTCTCGTCTGACAGAATACT 58.996 41.667 6.76 0.00 0.00 2.12
3573 4575 6.171213 TGAACTCTCGTCTGACAGAATACTA 58.829 40.000 6.76 0.00 0.00 1.82
3574 4576 6.653740 TGAACTCTCGTCTGACAGAATACTAA 59.346 38.462 6.76 0.00 0.00 2.24
3575 4577 6.671614 ACTCTCGTCTGACAGAATACTAAG 57.328 41.667 6.76 3.39 0.00 2.18
3576 4578 5.587043 ACTCTCGTCTGACAGAATACTAAGG 59.413 44.000 6.76 0.00 0.00 2.69
3577 4579 5.498393 TCTCGTCTGACAGAATACTAAGGT 58.502 41.667 6.76 0.00 0.00 3.50
3578 4580 5.944599 TCTCGTCTGACAGAATACTAAGGTT 59.055 40.000 6.76 0.00 0.00 3.50
3579 4581 6.433404 TCTCGTCTGACAGAATACTAAGGTTT 59.567 38.462 6.76 0.00 0.00 3.27
3580 4582 6.618811 TCGTCTGACAGAATACTAAGGTTTC 58.381 40.000 6.76 0.00 0.00 2.78
3581 4583 6.433404 TCGTCTGACAGAATACTAAGGTTTCT 59.567 38.462 6.76 0.00 0.00 2.52
3582 4584 7.039923 TCGTCTGACAGAATACTAAGGTTTCTT 60.040 37.037 6.76 0.00 37.03 2.52
3583 4585 7.599245 CGTCTGACAGAATACTAAGGTTTCTTT 59.401 37.037 6.76 0.00 34.59 2.52
3584 4586 8.927721 GTCTGACAGAATACTAAGGTTTCTTTC 58.072 37.037 6.76 0.00 34.59 2.62
3585 4587 8.871125 TCTGACAGAATACTAAGGTTTCTTTCT 58.129 33.333 1.64 0.00 34.59 2.52
3587 4589 9.924650 TGACAGAATACTAAGGTTTCTTTCTAC 57.075 33.333 0.00 0.00 34.59 2.59
3588 4590 9.924650 GACAGAATACTAAGGTTTCTTTCTACA 57.075 33.333 0.00 0.00 34.59 2.74
3589 4591 9.708092 ACAGAATACTAAGGTTTCTTTCTACAC 57.292 33.333 0.00 0.00 34.59 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.020678 CGTTCGCTTGAAAGACTTGAATTTTT 60.021 34.615 0.00 0.00 33.55 1.94
15 16 5.455525 CGTTCGCTTGAAAGACTTGAATTTT 59.544 36.000 0.00 0.00 33.55 1.82
16 17 4.970003 CGTTCGCTTGAAAGACTTGAATTT 59.030 37.500 0.00 0.00 33.55 1.82
17 18 4.527564 CGTTCGCTTGAAAGACTTGAATT 58.472 39.130 0.00 0.00 33.55 2.17
18 19 3.058914 CCGTTCGCTTGAAAGACTTGAAT 60.059 43.478 0.00 0.00 33.55 2.57
19 20 2.286833 CCGTTCGCTTGAAAGACTTGAA 59.713 45.455 0.00 0.00 33.55 2.69
20 21 1.864711 CCGTTCGCTTGAAAGACTTGA 59.135 47.619 0.00 0.00 33.55 3.02
21 22 1.597663 ACCGTTCGCTTGAAAGACTTG 59.402 47.619 0.00 0.00 33.55 3.16
22 23 1.949465 ACCGTTCGCTTGAAAGACTT 58.051 45.000 0.00 0.00 33.55 3.01
23 24 1.597663 CAACCGTTCGCTTGAAAGACT 59.402 47.619 0.00 0.00 33.55 3.24
24 25 1.595794 TCAACCGTTCGCTTGAAAGAC 59.404 47.619 1.28 0.00 33.55 3.01
25 26 1.595794 GTCAACCGTTCGCTTGAAAGA 59.404 47.619 4.84 0.00 33.55 2.52
26 27 1.656429 CGTCAACCGTTCGCTTGAAAG 60.656 52.381 4.84 0.52 32.31 2.62
27 28 0.302288 CGTCAACCGTTCGCTTGAAA 59.698 50.000 4.84 0.00 32.31 2.69
28 29 1.928653 CGTCAACCGTTCGCTTGAA 59.071 52.632 4.84 0.00 0.00 2.69
29 30 2.591311 GCGTCAACCGTTCGCTTGA 61.591 57.895 9.44 0.00 45.29 3.02
30 31 2.127758 GCGTCAACCGTTCGCTTG 60.128 61.111 9.44 0.00 45.29 4.01
34 35 4.072088 GCCAGCGTCAACCGTTCG 62.072 66.667 0.00 0.00 39.32 3.95
35 36 3.723348 GGCCAGCGTCAACCGTTC 61.723 66.667 0.00 0.00 39.32 3.95
39 40 0.963355 TAAATGGGCCAGCGTCAACC 60.963 55.000 13.78 0.00 0.00 3.77
40 41 0.885196 TTAAATGGGCCAGCGTCAAC 59.115 50.000 13.78 0.00 0.00 3.18
41 42 1.271102 GTTTAAATGGGCCAGCGTCAA 59.729 47.619 13.78 0.00 0.00 3.18
42 43 0.885196 GTTTAAATGGGCCAGCGTCA 59.115 50.000 13.78 0.00 0.00 4.35
43 44 0.172578 GGTTTAAATGGGCCAGCGTC 59.827 55.000 13.78 0.00 0.00 5.19
44 45 0.540830 TGGTTTAAATGGGCCAGCGT 60.541 50.000 13.78 1.52 0.00 5.07
45 46 0.823460 ATGGTTTAAATGGGCCAGCG 59.177 50.000 13.78 0.00 34.18 5.18
46 47 1.134431 CCATGGTTTAAATGGGCCAGC 60.134 52.381 13.78 0.00 40.86 4.85
47 48 2.985957 CCATGGTTTAAATGGGCCAG 57.014 50.000 13.78 0.00 40.86 4.85
52 53 1.485895 CTGGGCCCATGGTTTAAATGG 59.514 52.381 28.82 4.62 43.66 3.16
53 54 1.485895 CCTGGGCCCATGGTTTAAATG 59.514 52.381 28.82 9.39 0.00 2.32
54 55 1.878211 CCTGGGCCCATGGTTTAAAT 58.122 50.000 28.82 0.00 0.00 1.40
55 56 0.907230 GCCTGGGCCCATGGTTTAAA 60.907 55.000 28.82 0.00 34.56 1.52
56 57 1.305718 GCCTGGGCCCATGGTTTAA 60.306 57.895 28.82 0.00 34.56 1.52
57 58 2.362565 GCCTGGGCCCATGGTTTA 59.637 61.111 28.82 0.00 34.56 2.01
58 59 3.926214 TGCCTGGGCCCATGGTTT 61.926 61.111 28.82 0.00 41.09 3.27
59 60 4.702274 GTGCCTGGGCCCATGGTT 62.702 66.667 28.82 0.00 41.09 3.67
68 69 4.394712 GGACTGACGGTGCCTGGG 62.395 72.222 0.00 0.00 0.00 4.45
69 70 3.314331 AGGACTGACGGTGCCTGG 61.314 66.667 1.76 0.00 36.93 4.45
70 71 2.047844 CAGGACTGACGGTGCCTG 60.048 66.667 14.60 14.60 36.93 4.85
71 72 4.008933 GCAGGACTGACGGTGCCT 62.009 66.667 3.00 1.27 36.93 4.75
73 74 3.941657 GAGGCAGGACTGACGGTGC 62.942 68.421 3.00 0.00 45.19 5.01
74 75 2.262915 GAGGCAGGACTGACGGTG 59.737 66.667 3.00 0.00 45.19 4.94
75 76 3.374402 CGAGGCAGGACTGACGGT 61.374 66.667 3.00 0.00 45.19 4.83
76 77 3.057547 CTCGAGGCAGGACTGACGG 62.058 68.421 3.91 0.00 45.19 4.79
77 78 2.487428 CTCGAGGCAGGACTGACG 59.513 66.667 3.91 5.72 45.19 4.35
78 79 2.183046 GCTCGAGGCAGGACTGAC 59.817 66.667 15.58 0.00 41.35 3.51
87 88 2.899339 GCCCATCTTGCTCGAGGC 60.899 66.667 15.58 7.24 42.22 4.70
88 89 2.203126 GGCCCATCTTGCTCGAGG 60.203 66.667 15.58 0.00 0.00 4.63
89 90 2.587194 CGGCCCATCTTGCTCGAG 60.587 66.667 8.45 8.45 0.00 4.04
90 91 4.161295 CCGGCCCATCTTGCTCGA 62.161 66.667 0.00 0.00 0.00 4.04
118 119 3.818787 GTTGCCCTGAGCCGCATG 61.819 66.667 0.00 0.00 42.71 4.06
122 123 3.121030 CTTCGTTGCCCTGAGCCG 61.121 66.667 0.00 0.00 42.71 5.52
123 124 2.032681 ACTTCGTTGCCCTGAGCC 59.967 61.111 0.00 0.00 42.71 4.70
124 125 2.035442 GGACTTCGTTGCCCTGAGC 61.035 63.158 0.00 0.00 44.14 4.26
125 126 0.671781 CTGGACTTCGTTGCCCTGAG 60.672 60.000 0.00 0.00 0.00 3.35
126 127 1.371183 CTGGACTTCGTTGCCCTGA 59.629 57.895 0.00 0.00 0.00 3.86
127 128 2.328099 GCTGGACTTCGTTGCCCTG 61.328 63.158 0.00 0.00 0.00 4.45
128 129 2.032681 GCTGGACTTCGTTGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
129 130 3.056328 GGCTGGACTTCGTTGCCC 61.056 66.667 0.00 0.00 37.81 5.36
130 131 2.281484 TGGCTGGACTTCGTTGCC 60.281 61.111 0.00 0.00 43.49 4.52
131 132 1.891919 TGTGGCTGGACTTCGTTGC 60.892 57.895 0.00 0.00 0.00 4.17
132 133 0.813610 TGTGTGGCTGGACTTCGTTG 60.814 55.000 0.00 0.00 0.00 4.10
133 134 0.814010 GTGTGTGGCTGGACTTCGTT 60.814 55.000 0.00 0.00 0.00 3.85
134 135 1.227556 GTGTGTGGCTGGACTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
135 136 1.961277 GGTGTGTGGCTGGACTTCG 60.961 63.158 0.00 0.00 0.00 3.79
136 137 0.465460 TTGGTGTGTGGCTGGACTTC 60.465 55.000 0.00 0.00 0.00 3.01
137 138 0.033601 TTTGGTGTGTGGCTGGACTT 60.034 50.000 0.00 0.00 0.00 3.01
138 139 0.033601 TTTTGGTGTGTGGCTGGACT 60.034 50.000 0.00 0.00 0.00 3.85
139 140 0.820871 TTTTTGGTGTGTGGCTGGAC 59.179 50.000 0.00 0.00 0.00 4.02
140 141 3.289797 TTTTTGGTGTGTGGCTGGA 57.710 47.368 0.00 0.00 0.00 3.86
168 169 7.913821 CGAGTTTTAACTTCTAAGGCAGTTTTT 59.086 33.333 0.00 0.00 39.88 1.94
169 170 7.281549 TCGAGTTTTAACTTCTAAGGCAGTTTT 59.718 33.333 0.00 0.00 39.88 2.43
170 171 6.764560 TCGAGTTTTAACTTCTAAGGCAGTTT 59.235 34.615 0.00 0.00 39.88 2.66
171 172 6.285990 TCGAGTTTTAACTTCTAAGGCAGTT 58.714 36.000 0.00 0.00 39.88 3.16
172 173 5.850614 TCGAGTTTTAACTTCTAAGGCAGT 58.149 37.500 0.00 0.00 39.88 4.40
173 174 6.780706 TTCGAGTTTTAACTTCTAAGGCAG 57.219 37.500 0.00 0.00 39.88 4.85
174 175 7.556733 TTTTCGAGTTTTAACTTCTAAGGCA 57.443 32.000 0.00 0.00 39.88 4.75
197 198 0.385974 GCGCGTCTGCATGTCTTTTT 60.386 50.000 8.43 0.00 42.97 1.94
198 199 1.207593 GCGCGTCTGCATGTCTTTT 59.792 52.632 8.43 0.00 42.97 2.27
199 200 2.863153 GCGCGTCTGCATGTCTTT 59.137 55.556 8.43 0.00 42.97 2.52
200 201 3.481903 CGCGCGTCTGCATGTCTT 61.482 61.111 24.19 0.00 42.97 3.01
210 211 4.322385 AAAAGGTTGGCGCGCGTC 62.322 61.111 30.23 30.23 0.00 5.19
211 212 4.322385 GAAAAGGTTGGCGCGCGT 62.322 61.111 32.35 7.72 0.00 6.01
212 213 3.536498 AAGAAAAGGTTGGCGCGCG 62.536 57.895 28.44 28.44 0.00 6.86
213 214 2.016165 CAAGAAAAGGTTGGCGCGC 61.016 57.895 25.94 25.94 0.00 6.86
214 215 1.371635 CCAAGAAAAGGTTGGCGCG 60.372 57.895 0.00 0.00 38.23 6.86
215 216 4.653555 CCAAGAAAAGGTTGGCGC 57.346 55.556 0.00 0.00 38.23 6.53
221 222 0.661020 CGTCGCAACCAAGAAAAGGT 59.339 50.000 0.00 0.00 42.34 3.50
222 223 0.040425 CCGTCGCAACCAAGAAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
223 224 0.660300 GCCGTCGCAACCAAGAAAAG 60.660 55.000 0.00 0.00 34.03 2.27
224 225 1.357334 GCCGTCGCAACCAAGAAAA 59.643 52.632 0.00 0.00 34.03 2.29
225 226 2.887889 CGCCGTCGCAACCAAGAAA 61.888 57.895 0.00 0.00 34.03 2.52
226 227 3.342627 CGCCGTCGCAACCAAGAA 61.343 61.111 0.00 0.00 34.03 2.52
247 248 2.954868 GATCGCCCGTACGTGCTG 60.955 66.667 20.19 13.48 0.00 4.41
248 249 4.547905 CGATCGCCCGTACGTGCT 62.548 66.667 20.19 2.46 0.00 4.40
249 250 4.541482 TCGATCGCCCGTACGTGC 62.541 66.667 13.01 13.01 0.00 5.34
250 251 2.649975 GTCGATCGCCCGTACGTG 60.650 66.667 15.21 3.42 0.00 4.49
251 252 2.588146 CTTGTCGATCGCCCGTACGT 62.588 60.000 15.21 0.00 0.00 3.57
252 253 1.937846 CTTGTCGATCGCCCGTACG 60.938 63.158 11.09 8.69 0.00 3.67
253 254 1.588139 CCTTGTCGATCGCCCGTAC 60.588 63.158 11.09 3.36 0.00 3.67
254 255 1.750018 TCCTTGTCGATCGCCCGTA 60.750 57.895 11.09 0.00 0.00 4.02
255 256 3.066190 TCCTTGTCGATCGCCCGT 61.066 61.111 11.09 0.00 0.00 5.28
256 257 2.582498 GTCCTTGTCGATCGCCCG 60.582 66.667 11.09 0.00 0.00 6.13
257 258 2.582498 CGTCCTTGTCGATCGCCC 60.582 66.667 11.09 3.82 0.00 6.13
258 259 3.255379 GCGTCCTTGTCGATCGCC 61.255 66.667 11.09 0.00 40.83 5.54
259 260 2.506217 TGCGTCCTTGTCGATCGC 60.506 61.111 11.09 6.41 45.70 4.58
260 261 0.732880 AAGTGCGTCCTTGTCGATCG 60.733 55.000 9.36 9.36 0.00 3.69
261 262 1.126846 CAAAGTGCGTCCTTGTCGATC 59.873 52.381 0.00 0.00 0.00 3.69
262 263 1.148310 CAAAGTGCGTCCTTGTCGAT 58.852 50.000 0.00 0.00 0.00 3.59
263 264 0.103390 TCAAAGTGCGTCCTTGTCGA 59.897 50.000 0.00 0.00 0.00 4.20
264 265 0.232303 GTCAAAGTGCGTCCTTGTCG 59.768 55.000 0.00 0.00 0.00 4.35
265 266 1.295792 TGTCAAAGTGCGTCCTTGTC 58.704 50.000 0.00 0.00 0.00 3.18
266 267 1.745232 TTGTCAAAGTGCGTCCTTGT 58.255 45.000 0.00 0.00 0.00 3.16
267 268 2.541588 CCTTTGTCAAAGTGCGTCCTTG 60.542 50.000 21.12 2.14 36.77 3.61
268 269 1.676006 CCTTTGTCAAAGTGCGTCCTT 59.324 47.619 21.12 0.00 36.77 3.36
269 270 1.308998 CCTTTGTCAAAGTGCGTCCT 58.691 50.000 21.12 0.00 36.77 3.85
270 271 0.310854 CCCTTTGTCAAAGTGCGTCC 59.689 55.000 21.12 0.00 36.77 4.79
271 272 1.305201 TCCCTTTGTCAAAGTGCGTC 58.695 50.000 21.12 0.00 36.77 5.19
272 273 1.608590 CATCCCTTTGTCAAAGTGCGT 59.391 47.619 21.12 4.71 36.77 5.24
273 274 1.666888 GCATCCCTTTGTCAAAGTGCG 60.667 52.381 21.12 10.22 36.77 5.34
274 275 1.340889 TGCATCCCTTTGTCAAAGTGC 59.659 47.619 22.97 22.97 38.06 4.40
275 276 2.608752 GCTGCATCCCTTTGTCAAAGTG 60.609 50.000 21.12 14.82 36.77 3.16
276 277 1.615392 GCTGCATCCCTTTGTCAAAGT 59.385 47.619 21.12 3.23 36.77 2.66
277 278 1.891150 AGCTGCATCCCTTTGTCAAAG 59.109 47.619 17.02 17.02 38.24 2.77
278 279 1.999648 AGCTGCATCCCTTTGTCAAA 58.000 45.000 1.02 0.00 0.00 2.69
279 280 2.715046 CTAGCTGCATCCCTTTGTCAA 58.285 47.619 1.02 0.00 0.00 3.18
280 281 1.679944 GCTAGCTGCATCCCTTTGTCA 60.680 52.381 7.70 0.00 42.31 3.58
281 282 1.020437 GCTAGCTGCATCCCTTTGTC 58.980 55.000 7.70 0.00 42.31 3.18
282 283 3.181526 GCTAGCTGCATCCCTTTGT 57.818 52.632 7.70 0.00 42.31 2.83
292 293 3.123620 AGCGCTTGTGCTAGCTGC 61.124 61.111 17.23 13.33 45.14 5.25
299 300 0.040157 TTGATGTTGAGCGCTTGTGC 60.040 50.000 13.26 0.00 0.00 4.57
300 301 1.664016 GGTTGATGTTGAGCGCTTGTG 60.664 52.381 13.26 0.00 0.00 3.33
301 302 0.593128 GGTTGATGTTGAGCGCTTGT 59.407 50.000 13.26 0.00 0.00 3.16
302 303 0.453282 CGGTTGATGTTGAGCGCTTG 60.453 55.000 13.26 0.00 0.00 4.01
303 304 1.868997 CGGTTGATGTTGAGCGCTT 59.131 52.632 13.26 0.00 0.00 4.68
304 305 3.566261 CGGTTGATGTTGAGCGCT 58.434 55.556 11.27 11.27 0.00 5.92
306 307 2.096406 CGCGGTTGATGTTGAGCG 59.904 61.111 0.00 0.00 41.56 5.03
307 308 1.132640 GACGCGGTTGATGTTGAGC 59.867 57.895 12.47 0.00 0.00 4.26
308 309 1.282248 ACGACGCGGTTGATGTTGAG 61.282 55.000 12.47 0.00 0.00 3.02
309 310 0.876777 AACGACGCGGTTGATGTTGA 60.877 50.000 12.47 0.00 0.00 3.18
310 311 0.041663 AAACGACGCGGTTGATGTTG 60.042 50.000 12.47 0.00 34.66 3.33
311 312 0.658897 AAAACGACGCGGTTGATGTT 59.341 45.000 12.47 2.46 36.69 2.71
312 313 0.233848 GAAAACGACGCGGTTGATGT 59.766 50.000 12.47 0.00 36.69 3.06
313 314 0.452122 GGAAAACGACGCGGTTGATG 60.452 55.000 12.47 0.00 36.69 3.07
314 315 0.881159 TGGAAAACGACGCGGTTGAT 60.881 50.000 12.47 0.00 36.69 2.57
315 316 1.521010 TGGAAAACGACGCGGTTGA 60.521 52.632 12.47 0.00 36.69 3.18
316 317 1.368374 GTGGAAAACGACGCGGTTG 60.368 57.895 12.47 1.26 36.69 3.77
317 318 1.493134 GAGTGGAAAACGACGCGGTT 61.493 55.000 12.47 2.34 38.92 4.44
318 319 1.952635 GAGTGGAAAACGACGCGGT 60.953 57.895 12.47 0.00 0.00 5.68
319 320 2.664436 GGAGTGGAAAACGACGCGG 61.664 63.158 12.47 0.00 0.00 6.46
320 321 1.289109 ATGGAGTGGAAAACGACGCG 61.289 55.000 3.53 3.53 0.00 6.01
321 322 0.442699 GATGGAGTGGAAAACGACGC 59.557 55.000 0.00 0.00 0.00 5.19
322 323 2.080286 AGATGGAGTGGAAAACGACG 57.920 50.000 0.00 0.00 0.00 5.12
323 324 4.537015 CAAAAGATGGAGTGGAAAACGAC 58.463 43.478 0.00 0.00 0.00 4.34
324 325 4.829064 CAAAAGATGGAGTGGAAAACGA 57.171 40.909 0.00 0.00 0.00 3.85
337 338 1.660560 CCAGCCTCGGCCAAAAGATG 61.661 60.000 2.24 0.00 43.17 2.90
338 339 1.379044 CCAGCCTCGGCCAAAAGAT 60.379 57.895 2.24 0.00 43.17 2.40
339 340 1.852157 ATCCAGCCTCGGCCAAAAGA 61.852 55.000 2.24 0.00 43.17 2.52
340 341 1.379044 ATCCAGCCTCGGCCAAAAG 60.379 57.895 2.24 0.00 43.17 2.27
341 342 1.678635 CATCCAGCCTCGGCCAAAA 60.679 57.895 2.24 0.00 43.17 2.44
342 343 2.045045 CATCCAGCCTCGGCCAAA 60.045 61.111 2.24 0.00 43.17 3.28
343 344 4.802051 GCATCCAGCCTCGGCCAA 62.802 66.667 2.24 0.00 43.17 4.52
355 356 2.807622 GGCGACAAATGGGCATCC 59.192 61.111 0.00 0.00 0.00 3.51
356 357 2.408835 CGGCGACAAATGGGCATC 59.591 61.111 0.00 0.00 0.00 3.91
357 358 3.140141 CCGGCGACAAATGGGCAT 61.140 61.111 9.30 0.00 0.00 4.40
361 362 3.508840 GAGGCCGGCGACAAATGG 61.509 66.667 22.54 0.00 0.00 3.16
362 363 2.331893 TTGAGGCCGGCGACAAATG 61.332 57.895 26.50 0.00 0.00 2.32
363 364 2.033448 TTGAGGCCGGCGACAAAT 59.967 55.556 26.50 8.25 0.00 2.32
364 365 2.975799 GTTGAGGCCGGCGACAAA 60.976 61.111 28.94 16.02 0.00 2.83
385 386 4.465512 TCTTACCGCCGCGACGTC 62.466 66.667 15.93 5.18 0.00 4.34
386 387 4.766088 GTCTTACCGCCGCGACGT 62.766 66.667 15.93 7.15 0.00 4.34
388 389 4.465512 TCGTCTTACCGCCGCGAC 62.466 66.667 15.93 2.62 0.00 5.19
389 390 4.170062 CTCGTCTTACCGCCGCGA 62.170 66.667 15.93 0.00 0.00 5.87
391 392 4.493747 AGCTCGTCTTACCGCCGC 62.494 66.667 0.00 0.00 0.00 6.53
392 393 2.579787 CAGCTCGTCTTACCGCCG 60.580 66.667 0.00 0.00 0.00 6.46
393 394 2.202756 CCAGCTCGTCTTACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
394 395 2.886124 GCCAGCTCGTCTTACCGC 60.886 66.667 0.00 0.00 0.00 5.68
395 396 2.579787 CGCCAGCTCGTCTTACCG 60.580 66.667 0.00 0.00 0.00 4.02
396 397 2.202756 CCGCCAGCTCGTCTTACC 60.203 66.667 0.00 0.00 0.00 2.85
397 398 2.886124 GCCGCCAGCTCGTCTTAC 60.886 66.667 0.00 0.00 38.99 2.34
417 418 2.127906 CAAACGCACGCACGGTAC 60.128 61.111 2.61 0.00 37.37 3.34
418 419 4.003011 GCAAACGCACGCACGGTA 62.003 61.111 2.61 0.00 37.37 4.02
429 430 4.389576 GGCTCCAGTGCGCAAACG 62.390 66.667 14.00 2.76 44.07 3.60
430 431 4.389576 CGGCTCCAGTGCGCAAAC 62.390 66.667 14.00 0.00 0.00 2.93
448 449 2.740826 TAGCTGCCGTTTCGCCAC 60.741 61.111 0.00 0.00 0.00 5.01
449 450 2.740826 GTAGCTGCCGTTTCGCCA 60.741 61.111 0.00 0.00 0.00 5.69
450 451 3.497031 GGTAGCTGCCGTTTCGCC 61.497 66.667 4.63 0.00 0.00 5.54
451 452 3.849953 CGGTAGCTGCCGTTTCGC 61.850 66.667 32.20 0.00 46.11 4.70
478 479 2.593925 TCTGCTTCCTCTCTCTGTGA 57.406 50.000 0.00 0.00 0.00 3.58
479 480 3.587923 CTTTCTGCTTCCTCTCTCTGTG 58.412 50.000 0.00 0.00 0.00 3.66
481 482 2.028294 TGCTTTCTGCTTCCTCTCTCTG 60.028 50.000 0.00 0.00 43.37 3.35
485 486 2.028203 ACTCTGCTTTCTGCTTCCTCTC 60.028 50.000 0.00 0.00 43.37 3.20
488 489 1.003003 GGACTCTGCTTTCTGCTTCCT 59.997 52.381 0.00 0.00 43.37 3.36
489 490 1.447945 GGACTCTGCTTTCTGCTTCC 58.552 55.000 0.00 0.00 43.37 3.46
491 492 1.063183 AGGGACTCTGCTTTCTGCTT 58.937 50.000 0.00 0.00 43.37 3.91
492 493 1.003003 GAAGGGACTCTGCTTTCTGCT 59.997 52.381 0.00 0.00 38.49 4.24
493 494 1.447945 GAAGGGACTCTGCTTTCTGC 58.552 55.000 0.00 0.00 38.49 4.26
494 495 1.339535 GGGAAGGGACTCTGCTTTCTG 60.340 57.143 0.00 0.00 38.49 3.02
495 496 0.988063 GGGAAGGGACTCTGCTTTCT 59.012 55.000 0.00 0.00 38.49 2.52
496 497 0.988063 AGGGAAGGGACTCTGCTTTC 59.012 55.000 0.00 0.00 38.49 2.62
497 498 1.352687 GAAGGGAAGGGACTCTGCTTT 59.647 52.381 0.00 0.00 38.49 3.51
498 499 0.988063 GAAGGGAAGGGACTCTGCTT 59.012 55.000 0.00 0.00 38.49 3.91
602 610 0.971447 GAACGAGTCTACCCAGGCCT 60.971 60.000 0.00 0.00 0.00 5.19
620 628 4.007644 CCTGAGCGTGGCTGTGGA 62.008 66.667 0.00 0.00 39.88 4.02
658 666 2.981909 CAGCCACACCACCAGCAG 60.982 66.667 0.00 0.00 0.00 4.24
717 725 2.098298 CGTACCGTACGTGGACCG 59.902 66.667 20.61 5.19 46.41 4.79
869 1166 1.617947 CGGAAGGAAGTGGAGGGAGG 61.618 65.000 0.00 0.00 0.00 4.30
888 1185 0.747852 GTCTCGGGTGAAGAGGGATC 59.252 60.000 0.00 0.00 36.45 3.36
889 1186 0.688087 GGTCTCGGGTGAAGAGGGAT 60.688 60.000 0.00 0.00 36.45 3.85
890 1187 1.305046 GGTCTCGGGTGAAGAGGGA 60.305 63.158 0.00 0.00 36.45 4.20
893 1190 0.814457 CTCTGGTCTCGGGTGAAGAG 59.186 60.000 0.00 0.00 37.09 2.85
897 1202 1.679305 GAGCTCTGGTCTCGGGTGA 60.679 63.158 6.43 0.00 0.00 4.02
898 1203 2.888863 GAGCTCTGGTCTCGGGTG 59.111 66.667 6.43 0.00 0.00 4.61
941 1258 2.359107 TGCGGCTTCTTGGCTGAG 60.359 61.111 0.00 0.00 40.74 3.35
946 1263 3.777925 CGTCGTGCGGCTTCTTGG 61.778 66.667 0.00 0.00 36.85 3.61
1495 1812 1.653094 ATTAATGGCCGTGGTGCGTG 61.653 55.000 0.00 0.00 39.32 5.34
1496 1813 1.377987 ATTAATGGCCGTGGTGCGT 60.378 52.632 0.00 0.00 39.32 5.24
1497 1814 1.063972 CATTAATGGCCGTGGTGCG 59.936 57.895 7.62 0.00 40.95 5.34
1498 1815 1.226945 GCATTAATGGCCGTGGTGC 60.227 57.895 17.02 12.10 0.00 5.01
1499 1816 1.437160 GGCATTAATGGCCGTGGTG 59.563 57.895 27.12 0.00 46.49 4.17
1500 1817 3.933515 GGCATTAATGGCCGTGGT 58.066 55.556 27.12 0.00 46.49 4.16
1516 2241 5.175491 CGGTTCATTCAAGAAACATTGTTGG 59.825 40.000 2.13 0.00 34.90 3.77
1536 2261 1.002659 TCAATCAATCGACCCACGGTT 59.997 47.619 0.00 0.00 46.81 4.44
1538 2263 1.599071 CATCAATCAATCGACCCACGG 59.401 52.381 0.00 0.00 42.82 4.94
1546 2271 6.399986 GCATGCATTCATTCATCAATCAATCG 60.400 38.462 14.21 0.00 0.00 3.34
1757 2492 0.730834 CGATCGACGATGGAGATGCC 60.731 60.000 16.49 0.00 45.77 4.40
1815 2550 4.092771 CGAAGTCGGAGATCTGTTGTTA 57.907 45.455 0.00 0.00 40.67 2.41
1817 2552 2.638556 CGAAGTCGGAGATCTGTTGT 57.361 50.000 0.00 0.00 40.67 3.32
2049 2793 0.948678 AATGTTTGGTCGGTCGGTTG 59.051 50.000 0.00 0.00 0.00 3.77
2175 2919 3.708220 CTCCGTCTTGCCCTCGCTC 62.708 68.421 0.00 0.00 35.36 5.03
2177 2921 4.821589 CCTCCGTCTTGCCCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
2264 3011 4.578898 ACAGCGACGCCACGAACA 62.579 61.111 17.79 0.00 35.09 3.18
2344 3214 3.840890 TTCAACTTGTCAACGTTGCTT 57.159 38.095 23.47 6.64 40.12 3.91
2345 3215 3.840890 TTTCAACTTGTCAACGTTGCT 57.159 38.095 23.47 0.78 40.12 3.91
2346 3216 4.326009 ACATTTTCAACTTGTCAACGTTGC 59.674 37.500 23.47 17.81 40.12 4.17
2359 3229 4.459606 TGTTCGTCGCATACATTTTCAAC 58.540 39.130 0.00 0.00 0.00 3.18
2380 3250 1.332686 CATGCCACCACGATCAGATTG 59.667 52.381 0.00 0.00 0.00 2.67
2438 3308 2.725008 GCTCCTCCGTGATCTCCG 59.275 66.667 0.00 0.00 0.00 4.63
2574 3450 4.514577 TGCTAAGCGCTCGAGGCC 62.515 66.667 12.06 0.00 40.11 5.19
2611 3492 3.121030 AGCAAGCATCACGGTCGC 61.121 61.111 0.00 0.00 0.00 5.19
2631 3512 2.232208 CAGGTGGGAAGGAGCAAAATTC 59.768 50.000 0.00 0.00 0.00 2.17
2737 3662 1.305930 GCACCACCATCTTTCCCGTC 61.306 60.000 0.00 0.00 0.00 4.79
2742 3667 1.796796 GCGAGCACCACCATCTTTC 59.203 57.895 0.00 0.00 0.00 2.62
2750 3675 3.726517 ATTGCACGCGAGCACCAC 61.727 61.111 30.47 0.53 45.61 4.16
2751 3676 3.725459 CATTGCACGCGAGCACCA 61.725 61.111 30.47 17.83 45.61 4.17
2768 3693 0.521242 CGGTCTGCTTTGCATTACGC 60.521 55.000 0.00 0.00 38.13 4.42
2782 3707 1.370064 CCGACAAAACCCTCGGTCT 59.630 57.895 0.00 0.00 43.79 3.85
2786 3711 1.674322 ATGCCCGACAAAACCCTCG 60.674 57.895 0.00 0.00 0.00 4.63
2804 3729 0.685097 CGGTCTCTTTCCCTGAACCA 59.315 55.000 0.00 0.00 0.00 3.67
2807 3732 0.974383 GGTCGGTCTCTTTCCCTGAA 59.026 55.000 0.00 0.00 0.00 3.02
2808 3733 1.248785 CGGTCGGTCTCTTTCCCTGA 61.249 60.000 0.00 0.00 0.00 3.86
2809 3734 1.215647 CGGTCGGTCTCTTTCCCTG 59.784 63.158 0.00 0.00 0.00 4.45
2854 3779 4.162690 CCGGAGCAGCCAGGTACC 62.163 72.222 2.73 2.73 35.94 3.34
2870 3806 0.828762 GTACCCAACCCAACCCAACC 60.829 60.000 0.00 0.00 0.00 3.77
2871 3807 0.186630 AGTACCCAACCCAACCCAAC 59.813 55.000 0.00 0.00 0.00 3.77
2872 3808 0.935194 AAGTACCCAACCCAACCCAA 59.065 50.000 0.00 0.00 0.00 4.12
2873 3809 0.186386 CAAGTACCCAACCCAACCCA 59.814 55.000 0.00 0.00 0.00 4.51
2874 3810 0.541063 CCAAGTACCCAACCCAACCC 60.541 60.000 0.00 0.00 0.00 4.11
2955 3891 4.696402 ATGCGCTACCAGAGTAGAGTATAC 59.304 45.833 9.73 0.00 45.20 1.47
2963 3899 1.100510 ACGAATGCGCTACCAGAGTA 58.899 50.000 9.73 0.00 42.48 2.59
2965 3901 1.148157 CCACGAATGCGCTACCAGAG 61.148 60.000 9.73 0.00 42.48 3.35
2966 3902 1.153647 CCACGAATGCGCTACCAGA 60.154 57.895 9.73 0.00 42.48 3.86
3017 3961 1.671379 GCTCAACCTGTCCCGAACC 60.671 63.158 0.00 0.00 0.00 3.62
3045 3989 4.666253 TGTGCAAGGAGCCAGGGC 62.666 66.667 0.97 0.97 44.83 5.19
3128 4073 1.148157 CTCACGGCCACATGATCGAC 61.148 60.000 2.24 0.00 0.00 4.20
3163 4108 2.163412 CGAGGAGAGAAGAGAACACCTG 59.837 54.545 0.00 0.00 0.00 4.00
3169 4114 0.039764 TGCCCGAGGAGAGAAGAGAA 59.960 55.000 0.00 0.00 0.00 2.87
3170 4115 0.395036 CTGCCCGAGGAGAGAAGAGA 60.395 60.000 0.00 0.00 0.00 3.10
3171 4116 2.015227 GCTGCCCGAGGAGAGAAGAG 62.015 65.000 0.00 0.00 0.00 2.85
3172 4117 2.055042 GCTGCCCGAGGAGAGAAGA 61.055 63.158 0.00 0.00 0.00 2.87
3173 4118 1.612395 AAGCTGCCCGAGGAGAGAAG 61.612 60.000 0.00 0.00 0.00 2.85
3209 4154 1.221414 AGCAAGTTGTCGCAGAAGAC 58.779 50.000 4.48 0.00 39.69 3.01
3216 4161 4.151689 TGTTACTGATAAGCAAGTTGTCGC 59.848 41.667 4.48 0.00 0.00 5.19
3248 4196 1.569493 CTTGTCAACCAACCTCGCG 59.431 57.895 0.00 0.00 0.00 5.87
3289 4237 8.641499 CACAGGTTGCTTTCAGTTTTTAATAA 57.359 30.769 0.00 0.00 0.00 1.40
3322 4270 4.292643 TGTATCCCACTTTAGTACTCCCC 58.707 47.826 0.00 0.00 0.00 4.81
3401 4371 3.706594 CCAGTATTTAGGAGTGAGGAGCA 59.293 47.826 0.00 0.00 0.00 4.26
3402 4372 3.493524 GCCAGTATTTAGGAGTGAGGAGC 60.494 52.174 0.00 0.00 0.00 4.70
3403 4373 3.070302 GGCCAGTATTTAGGAGTGAGGAG 59.930 52.174 0.00 0.00 0.00 3.69
3501 4503 1.591327 CACCAAAACCAAGCACCGC 60.591 57.895 0.00 0.00 0.00 5.68
3557 4559 6.622549 AGAAACCTTAGTATTCTGTCAGACG 58.377 40.000 0.78 0.00 32.42 4.18
3558 4560 8.834749 AAAGAAACCTTAGTATTCTGTCAGAC 57.165 34.615 0.78 0.00 33.86 3.51
3559 4561 8.871125 AGAAAGAAACCTTAGTATTCTGTCAGA 58.129 33.333 13.38 0.00 39.07 3.27
3561 4563 9.924650 GTAGAAAGAAACCTTAGTATTCTGTCA 57.075 33.333 13.38 2.31 39.07 3.58
3562 4564 9.924650 TGTAGAAAGAAACCTTAGTATTCTGTC 57.075 33.333 6.41 6.41 37.59 3.51
3563 4565 9.708092 GTGTAGAAAGAAACCTTAGTATTCTGT 57.292 33.333 0.00 0.00 33.86 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.