Multiple sequence alignment - TraesCS7A01G432600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G432600 chr7A 100.000 2306 0 0 1 2306 626616392 626614087 0.000000e+00 4259.0
1 TraesCS7A01G432600 chr7A 90.541 74 6 1 572 645 626615678 626615606 1.890000e-16 97.1
2 TraesCS7A01G432600 chr7A 90.541 74 6 1 715 787 626615821 626615748 1.890000e-16 97.1
3 TraesCS7A01G432600 chr7B 95.168 952 31 8 1 942 588289683 588288737 0.000000e+00 1489.0
4 TraesCS7A01G432600 chr7B 94.364 621 29 5 925 1545 588288723 588288109 0.000000e+00 948.0
5 TraesCS7A01G432600 chr7B 88.000 550 23 6 1584 2106 588288106 588287573 5.450000e-171 610.0
6 TraesCS7A01G432600 chr7B 87.079 178 8 4 2134 2306 588287588 588287421 1.090000e-43 187.0
7 TraesCS7A01G432600 chr7B 90.541 74 6 1 715 787 588289110 588289037 1.890000e-16 97.1
8 TraesCS7A01G432600 chr7B 88.462 52 6 0 648 699 388902609 388902558 1.910000e-06 63.9
9 TraesCS7A01G432600 chr7D 92.366 917 39 11 619 1527 544852433 544851540 0.000000e+00 1277.0
10 TraesCS7A01G432600 chr7D 89.409 491 30 9 1 482 544853013 544852536 1.180000e-167 599.0
11 TraesCS7A01G432600 chr7D 90.446 157 11 4 1744 1898 544851374 544851220 1.080000e-48 204.0
12 TraesCS7A01G432600 chr7D 87.356 174 14 4 2134 2306 544851003 544850837 2.340000e-45 193.0
13 TraesCS7A01G432600 chr7D 90.909 77 6 1 574 650 544852336 544852261 4.050000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G432600 chr7A 626614087 626616392 2305 True 1484.40 4259 93.6940 1 2306 3 chr7A.!!$R1 2305
1 TraesCS7A01G432600 chr7B 588287421 588289683 2262 True 666.22 1489 91.0304 1 2306 5 chr7B.!!$R2 2305
2 TraesCS7A01G432600 chr7D 544850837 544853013 2176 True 475.00 1277 90.0972 1 2306 5 chr7D.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 302 1.628846 GAGACCCAGGCTTTGAACCTA 59.371 52.381 0.0 0.0 35.1 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2274 0.030101 TTCTTTTTGCGGTGGCGAAG 59.97 50.0 0.0 0.0 43.26 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.903135 TGTTGGGGGTCAAAATCCATTC 59.097 45.455 0.00 0.00 37.08 2.67
159 160 1.705256 ATAAAACTCGTTCTGCGCGA 58.295 45.000 12.10 0.00 41.07 5.87
177 178 3.119096 GAAAGACAGTCCCGCGGC 61.119 66.667 22.85 7.25 0.00 6.53
296 302 1.628846 GAGACCCAGGCTTTGAACCTA 59.371 52.381 0.00 0.00 35.10 3.08
318 324 4.468689 GACCGCCCCACTACAGGC 62.469 72.222 0.00 0.00 46.17 4.85
363 372 6.729391 TGTTTGTTGATGTAAGCGCTAATA 57.271 33.333 12.05 0.00 0.00 0.98
376 385 6.576662 AAGCGCTAATAGTAGAAGCTATCA 57.423 37.500 12.05 0.00 40.03 2.15
415 424 6.710744 CCAAGTTACCAAGTCACAAATACTCT 59.289 38.462 0.00 0.00 0.00 3.24
510 551 9.385902 CCATTAATGTAATGCTGAATTTCTACG 57.614 33.333 14.25 0.00 43.19 3.51
521 562 8.492673 TGCTGAATTTCTACGATTCTTTATGT 57.507 30.769 0.00 0.00 35.15 2.29
691 733 9.822185 AAAAGATTTGCCTCATGGATTAATTAC 57.178 29.630 0.00 0.00 34.57 1.89
699 741 6.525629 CCTCATGGATTAATTACGGAGAAGT 58.474 40.000 0.00 0.00 34.57 3.01
787 829 5.424121 TTGCTTTTCTGAAGCTAACTCAC 57.576 39.130 11.51 0.00 43.38 3.51
796 838 5.012046 TCTGAAGCTAACTCACATTTCAGGA 59.988 40.000 10.93 0.00 40.96 3.86
824 866 4.031991 GCAAGGTTTAACGTTTGTTTGACC 59.968 41.667 5.91 6.24 39.89 4.02
935 980 7.518161 ACACGATATGACTAATTTGTTGTGTG 58.482 34.615 0.00 1.81 34.70 3.82
956 1032 8.243426 TGTGTGCCTATTGAAAGTGAATTAATC 58.757 33.333 0.00 0.00 0.00 1.75
957 1033 8.243426 GTGTGCCTATTGAAAGTGAATTAATCA 58.757 33.333 0.00 0.00 35.05 2.57
958 1034 8.801299 TGTGCCTATTGAAAGTGAATTAATCAA 58.199 29.630 0.00 0.00 40.50 2.57
959 1035 9.638239 GTGCCTATTGAAAGTGAATTAATCAAA 57.362 29.630 0.00 0.00 40.50 2.69
1218 1294 0.901580 TACCTTCCGACCCACCTGTC 60.902 60.000 0.00 0.00 0.00 3.51
1224 1300 3.311110 GACCCACCTGTCGCCAGA 61.311 66.667 0.00 0.00 41.50 3.86
1273 1349 1.376037 GTGAAGAAGCCCAGGGACG 60.376 63.158 10.89 0.00 0.00 4.79
1275 1351 2.930562 AAGAAGCCCAGGGACGCT 60.931 61.111 10.89 0.00 36.74 5.07
1281 1357 4.394712 CCCAGGGACGCTGGTGAC 62.395 72.222 30.50 0.00 40.23 3.67
1316 1392 2.105930 CGAGTAGGCTGCTGGCTC 59.894 66.667 22.96 14.20 46.86 4.70
1317 1393 2.714991 CGAGTAGGCTGCTGGCTCA 61.715 63.158 22.96 7.48 46.86 4.26
1318 1394 1.153469 GAGTAGGCTGCTGGCTCAC 60.153 63.158 22.96 17.58 46.86 3.51
1439 1521 9.985730 ATGTGTGATTCTGTATGAAACAAATTT 57.014 25.926 0.00 0.00 38.80 1.82
1453 1535 5.821516 AACAAATTTGTCTGAACGTACCA 57.178 34.783 23.47 0.00 41.31 3.25
1471 1553 1.002033 CCAACTGCAGTTCAGACTTGC 60.002 52.381 28.97 0.00 45.72 4.01
1545 1628 3.961477 TTTGACACACCACGAAATGAG 57.039 42.857 0.00 0.00 0.00 2.90
1547 1630 1.202639 TGACACACCACGAAATGAGCT 60.203 47.619 0.00 0.00 0.00 4.09
1548 1631 2.036604 TGACACACCACGAAATGAGCTA 59.963 45.455 0.00 0.00 0.00 3.32
1549 1632 2.668457 GACACACCACGAAATGAGCTAG 59.332 50.000 0.00 0.00 0.00 3.42
1551 1634 3.067106 CACACCACGAAATGAGCTAGTT 58.933 45.455 0.00 0.00 0.00 2.24
1553 1636 3.746492 ACACCACGAAATGAGCTAGTTTC 59.254 43.478 11.43 11.43 0.00 2.78
1554 1637 3.125316 CACCACGAAATGAGCTAGTTTCC 59.875 47.826 14.35 2.21 32.14 3.13
1555 1638 2.678336 CCACGAAATGAGCTAGTTTCCC 59.322 50.000 14.35 0.00 32.14 3.97
1557 1640 2.572104 ACGAAATGAGCTAGTTTCCCCT 59.428 45.455 14.35 0.03 32.14 4.79
1559 1642 4.120589 CGAAATGAGCTAGTTTCCCCTAC 58.879 47.826 14.35 0.00 32.14 3.18
1560 1643 4.452825 GAAATGAGCTAGTTTCCCCTACC 58.547 47.826 10.67 0.00 0.00 3.18
1562 1645 3.130734 TGAGCTAGTTTCCCCTACCAT 57.869 47.619 0.00 0.00 0.00 3.55
1564 1647 3.310193 GAGCTAGTTTCCCCTACCATCT 58.690 50.000 0.00 0.00 0.00 2.90
1565 1648 4.078805 TGAGCTAGTTTCCCCTACCATCTA 60.079 45.833 0.00 0.00 0.00 1.98
1566 1649 4.484912 AGCTAGTTTCCCCTACCATCTAG 58.515 47.826 0.00 0.00 0.00 2.43
1567 1650 4.170251 AGCTAGTTTCCCCTACCATCTAGA 59.830 45.833 0.00 0.00 0.00 2.43
1568 1651 4.281435 GCTAGTTTCCCCTACCATCTAGAC 59.719 50.000 0.00 0.00 0.00 2.59
1570 1653 4.290942 AGTTTCCCCTACCATCTAGACAG 58.709 47.826 0.00 0.00 0.00 3.51
1571 1654 2.383442 TCCCCTACCATCTAGACAGC 57.617 55.000 0.00 0.00 0.00 4.40
1572 1655 0.962489 CCCCTACCATCTAGACAGCG 59.038 60.000 0.00 0.00 0.00 5.18
1573 1656 1.693627 CCCTACCATCTAGACAGCGT 58.306 55.000 0.00 0.00 0.00 5.07
1575 1658 2.298610 CCTACCATCTAGACAGCGTGA 58.701 52.381 0.00 0.00 0.00 4.35
1576 1659 2.033550 CCTACCATCTAGACAGCGTGAC 59.966 54.545 0.00 0.00 0.00 3.67
1577 1660 1.545841 ACCATCTAGACAGCGTGACA 58.454 50.000 0.00 0.00 0.00 3.58
1578 1661 1.893137 ACCATCTAGACAGCGTGACAA 59.107 47.619 0.00 0.00 0.00 3.18
1579 1662 2.094494 ACCATCTAGACAGCGTGACAAG 60.094 50.000 0.00 0.00 0.00 3.16
1580 1663 2.534298 CATCTAGACAGCGTGACAAGG 58.466 52.381 0.00 0.00 0.00 3.61
1581 1664 1.905637 TCTAGACAGCGTGACAAGGA 58.094 50.000 0.00 0.00 0.00 3.36
1582 1665 2.447443 TCTAGACAGCGTGACAAGGAT 58.553 47.619 0.00 0.00 0.00 3.24
1583 1666 3.617284 TCTAGACAGCGTGACAAGGATA 58.383 45.455 0.00 0.00 0.00 2.59
1585 1668 1.204941 AGACAGCGTGACAAGGATACC 59.795 52.381 0.00 0.00 37.17 2.73
1591 1700 4.079253 AGCGTGACAAGGATACCAAAATT 58.921 39.130 0.00 0.00 37.17 1.82
1616 1725 2.624838 CAGGTTCACTTGAGCACCAAAT 59.375 45.455 3.48 0.00 33.76 2.32
1631 1740 4.402155 GCACCAAATGGATGGAAGACATAA 59.598 41.667 6.42 0.00 43.54 1.90
1636 1745 8.605065 ACCAAATGGATGGAAGACATAAATTTT 58.395 29.630 6.42 0.00 43.54 1.82
1674 1783 2.825532 GCCATACCAACAGTGACCAAAT 59.174 45.455 0.00 0.00 0.00 2.32
1686 1795 1.303309 GACCAAATCGAGGCTGATGG 58.697 55.000 0.00 0.00 0.00 3.51
1710 1819 3.390135 CGTTAGGCATTCATCATACGGT 58.610 45.455 0.00 0.00 0.00 4.83
1711 1820 4.552355 CGTTAGGCATTCATCATACGGTA 58.448 43.478 0.00 0.00 0.00 4.02
1725 1834 4.696877 TCATACGGTATATAGTGGTCACGG 59.303 45.833 0.00 0.00 36.20 4.94
1877 1988 9.883142 AAAAATCTACAATTGGAAAGTTGTGAA 57.117 25.926 10.83 0.00 38.84 3.18
1975 2141 8.836413 TGTCATGTTTTTAGTTCAAAGGAGTAG 58.164 33.333 0.00 0.00 0.00 2.57
1998 2171 1.909986 AGTAACAGGAAGAGAAGGGGC 59.090 52.381 0.00 0.00 0.00 5.80
2029 2202 5.766222 CTTCTGTCAATTTCAAAGACCCTG 58.234 41.667 0.00 0.00 0.00 4.45
2087 2260 3.223661 GAGTTCACTCACAGCCCAG 57.776 57.895 1.86 0.00 42.42 4.45
2090 2263 0.947244 GTTCACTCACAGCCCAGTTG 59.053 55.000 0.00 0.00 0.00 3.16
2091 2264 0.836606 TTCACTCACAGCCCAGTTGA 59.163 50.000 0.00 0.00 0.00 3.18
2092 2265 0.836606 TCACTCACAGCCCAGTTGAA 59.163 50.000 0.00 0.00 0.00 2.69
2093 2266 1.211703 TCACTCACAGCCCAGTTGAAA 59.788 47.619 0.00 0.00 0.00 2.69
2094 2267 2.023673 CACTCACAGCCCAGTTGAAAA 58.976 47.619 0.00 0.00 0.00 2.29
2095 2268 2.624838 CACTCACAGCCCAGTTGAAAAT 59.375 45.455 0.00 0.00 0.00 1.82
2096 2269 2.887152 ACTCACAGCCCAGTTGAAAATC 59.113 45.455 0.00 0.00 0.00 2.17
2097 2270 1.879380 TCACAGCCCAGTTGAAAATCG 59.121 47.619 0.00 0.00 0.00 3.34
2098 2271 1.879380 CACAGCCCAGTTGAAAATCGA 59.121 47.619 0.00 0.00 0.00 3.59
2099 2272 2.293122 CACAGCCCAGTTGAAAATCGAA 59.707 45.455 0.00 0.00 0.00 3.71
2100 2273 2.955660 ACAGCCCAGTTGAAAATCGAAA 59.044 40.909 0.00 0.00 0.00 3.46
2101 2274 3.243401 ACAGCCCAGTTGAAAATCGAAAC 60.243 43.478 0.00 0.00 0.00 2.78
2102 2275 3.004734 CAGCCCAGTTGAAAATCGAAACT 59.995 43.478 0.00 0.00 34.52 2.66
2103 2276 3.636764 AGCCCAGTTGAAAATCGAAACTT 59.363 39.130 0.00 0.00 31.88 2.66
2104 2277 3.981416 GCCCAGTTGAAAATCGAAACTTC 59.019 43.478 0.00 0.00 31.88 3.01
2113 2286 3.342627 CGAAACTTCGCCACCGCA 61.343 61.111 0.00 0.00 44.26 5.69
2114 2287 2.887889 CGAAACTTCGCCACCGCAA 61.888 57.895 0.00 0.00 44.26 4.85
2115 2288 1.357334 GAAACTTCGCCACCGCAAA 59.643 52.632 0.00 0.00 34.03 3.68
2116 2289 0.248702 GAAACTTCGCCACCGCAAAA 60.249 50.000 0.00 0.00 34.03 2.44
2117 2290 0.173708 AAACTTCGCCACCGCAAAAA 59.826 45.000 0.00 0.00 34.03 1.94
2118 2291 0.248866 AACTTCGCCACCGCAAAAAG 60.249 50.000 0.00 0.00 34.03 2.27
2119 2292 1.098712 ACTTCGCCACCGCAAAAAGA 61.099 50.000 0.00 0.00 34.03 2.52
2120 2293 0.030101 CTTCGCCACCGCAAAAAGAA 59.970 50.000 0.00 0.00 34.03 2.52
2121 2294 0.456221 TTCGCCACCGCAAAAAGAAA 59.544 45.000 0.00 0.00 34.03 2.52
2122 2295 0.456221 TCGCCACCGCAAAAAGAAAA 59.544 45.000 0.00 0.00 34.03 2.29
2123 2296 1.135083 TCGCCACCGCAAAAAGAAAAA 60.135 42.857 0.00 0.00 34.03 1.94
2248 2426 1.891933 TGGCAACATCTCCCTCCATA 58.108 50.000 0.00 0.00 46.17 2.74
2249 2427 1.770658 TGGCAACATCTCCCTCCATAG 59.229 52.381 0.00 0.00 46.17 2.23
2250 2428 1.771255 GGCAACATCTCCCTCCATAGT 59.229 52.381 0.00 0.00 0.00 2.12
2251 2429 2.486191 GGCAACATCTCCCTCCATAGTG 60.486 54.545 0.00 0.00 0.00 2.74
2252 2430 2.486191 GCAACATCTCCCTCCATAGTGG 60.486 54.545 0.00 0.00 39.43 4.00
2253 2431 2.105477 CAACATCTCCCTCCATAGTGGG 59.895 54.545 0.00 0.00 46.60 4.61
2254 2432 0.689623 CATCTCCCTCCATAGTGGGC 59.310 60.000 0.00 0.00 45.11 5.36
2255 2433 0.474660 ATCTCCCTCCATAGTGGGCC 60.475 60.000 0.00 0.00 45.11 5.80
2256 2434 2.039831 TCCCTCCATAGTGGGCCC 60.040 66.667 17.59 17.59 45.11 5.80
2257 2435 3.560251 CCCTCCATAGTGGGCCCG 61.560 72.222 19.37 1.06 39.89 6.13
2277 2461 1.205064 CAAAGAGTGCCGCAAGACG 59.795 57.895 0.00 0.00 43.15 4.18
2303 2487 1.173043 CAGGAAGCAATTGGCCGTTA 58.827 50.000 7.72 0.00 46.50 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.605692 GCGAGTGTTCAAAAGAAGCAGAG 60.606 47.826 0.00 0.00 0.00 3.35
159 160 2.657237 CCGCGGGACTGTCTTTCT 59.343 61.111 20.10 0.00 0.00 2.52
177 178 5.825151 TGGGGTTTCTTGCCTTTTAAAAATG 59.175 36.000 1.66 0.00 0.00 2.32
296 302 4.371417 TAGTGGGGCGGTCGACCT 62.371 66.667 30.92 13.88 44.51 3.85
318 324 1.260561 GTTGATAGCGCGGTGGTAATG 59.739 52.381 23.02 0.00 33.55 1.90
319 325 1.134640 TGTTGATAGCGCGGTGGTAAT 60.135 47.619 23.02 5.94 33.55 1.89
363 372 4.954826 ACGGGTTACTTGATAGCTTCTACT 59.045 41.667 0.00 0.00 0.00 2.57
376 385 3.286329 AACTTGGACAACGGGTTACTT 57.714 42.857 0.00 0.00 0.00 2.24
744 786 1.045911 AGGCAGCTCTAGTAGTGCCC 61.046 60.000 20.99 15.51 45.79 5.36
787 829 4.796038 AACCTTGCAGAATCCTGAAATG 57.204 40.909 0.00 0.00 43.02 2.32
796 838 5.257082 ACAAACGTTAAACCTTGCAGAAT 57.743 34.783 0.00 0.00 0.00 2.40
824 866 0.813210 GCAAGGAGCCAAGGAGATCG 60.813 60.000 0.00 0.00 37.23 3.69
977 1053 2.025605 TCAGGACTCGCTTTCCTACCTA 60.026 50.000 0.00 0.00 41.95 3.08
1014 1090 1.599576 GGCAGAGACCAACCTCCTC 59.400 63.158 0.00 0.00 33.76 3.71
1059 1135 5.152623 TCTGACCGATTCTCACTTCAATT 57.847 39.130 0.00 0.00 0.00 2.32
1060 1136 4.808414 TCTGACCGATTCTCACTTCAAT 57.192 40.909 0.00 0.00 0.00 2.57
1218 1294 1.264288 GTGTCTGGTCTTTTTCTGGCG 59.736 52.381 0.00 0.00 0.00 5.69
1224 1300 1.594331 GGCGAGTGTCTGGTCTTTTT 58.406 50.000 0.00 0.00 0.00 1.94
1439 1521 1.137282 TGCAGTTGGTACGTTCAGACA 59.863 47.619 0.00 0.00 0.00 3.41
1453 1535 2.338577 AGCAAGTCTGAACTGCAGTT 57.661 45.000 31.57 31.57 45.14 3.16
1471 1553 7.703058 ACCCCTGATTTTACTGACAATAAAG 57.297 36.000 0.00 0.00 0.00 1.85
1545 1628 4.281435 GTCTAGATGGTAGGGGAAACTAGC 59.719 50.000 0.00 0.00 40.81 3.42
1547 1630 5.455872 CTGTCTAGATGGTAGGGGAAACTA 58.544 45.833 0.00 0.00 0.00 2.24
1548 1631 4.290942 CTGTCTAGATGGTAGGGGAAACT 58.709 47.826 0.00 0.00 0.00 2.66
1549 1632 3.181464 GCTGTCTAGATGGTAGGGGAAAC 60.181 52.174 0.00 0.00 0.00 2.78
1551 1634 2.679082 GCTGTCTAGATGGTAGGGGAA 58.321 52.381 0.00 0.00 0.00 3.97
1553 1636 0.962489 CGCTGTCTAGATGGTAGGGG 59.038 60.000 0.00 0.00 0.00 4.79
1554 1637 1.338337 CACGCTGTCTAGATGGTAGGG 59.662 57.143 0.00 4.04 0.00 3.53
1555 1638 2.033550 GTCACGCTGTCTAGATGGTAGG 59.966 54.545 0.00 0.00 0.00 3.18
1557 1640 2.718563 TGTCACGCTGTCTAGATGGTA 58.281 47.619 0.00 0.00 0.00 3.25
1559 1642 2.534298 CTTGTCACGCTGTCTAGATGG 58.466 52.381 0.00 0.00 0.00 3.51
1560 1643 2.164422 TCCTTGTCACGCTGTCTAGATG 59.836 50.000 0.00 0.00 0.00 2.90
1562 1645 1.905637 TCCTTGTCACGCTGTCTAGA 58.094 50.000 0.00 0.00 0.00 2.43
1564 1647 2.426024 GGTATCCTTGTCACGCTGTCTA 59.574 50.000 0.00 0.00 0.00 2.59
1565 1648 1.204941 GGTATCCTTGTCACGCTGTCT 59.795 52.381 0.00 0.00 0.00 3.41
1566 1649 1.067142 TGGTATCCTTGTCACGCTGTC 60.067 52.381 0.00 0.00 0.00 3.51
1567 1650 0.973632 TGGTATCCTTGTCACGCTGT 59.026 50.000 0.00 0.00 0.00 4.40
1568 1651 2.093306 TTGGTATCCTTGTCACGCTG 57.907 50.000 0.00 0.00 0.00 5.18
1570 1653 4.434713 AATTTTGGTATCCTTGTCACGC 57.565 40.909 0.00 0.00 0.00 5.34
1571 1654 7.757526 TGATAAATTTTGGTATCCTTGTCACG 58.242 34.615 0.00 0.00 0.00 4.35
1572 1655 8.190784 CCTGATAAATTTTGGTATCCTTGTCAC 58.809 37.037 0.00 0.00 0.00 3.67
1573 1656 7.893302 ACCTGATAAATTTTGGTATCCTTGTCA 59.107 33.333 0.00 0.00 0.00 3.58
1575 1658 8.664669 AACCTGATAAATTTTGGTATCCTTGT 57.335 30.769 0.00 0.00 0.00 3.16
1576 1659 8.748412 TGAACCTGATAAATTTTGGTATCCTTG 58.252 33.333 0.00 0.00 0.00 3.61
1577 1660 8.749354 GTGAACCTGATAAATTTTGGTATCCTT 58.251 33.333 0.00 0.00 0.00 3.36
1578 1661 8.116026 AGTGAACCTGATAAATTTTGGTATCCT 58.884 33.333 0.00 0.00 0.00 3.24
1579 1662 8.293699 AGTGAACCTGATAAATTTTGGTATCC 57.706 34.615 0.00 0.00 0.00 2.59
1580 1663 9.573133 CAAGTGAACCTGATAAATTTTGGTATC 57.427 33.333 0.00 0.00 0.00 2.24
1581 1664 9.308000 TCAAGTGAACCTGATAAATTTTGGTAT 57.692 29.630 0.00 0.00 0.00 2.73
1582 1665 8.698973 TCAAGTGAACCTGATAAATTTTGGTA 57.301 30.769 0.00 0.00 0.00 3.25
1583 1666 7.595819 TCAAGTGAACCTGATAAATTTTGGT 57.404 32.000 0.00 0.00 0.00 3.67
1585 1668 7.115378 GTGCTCAAGTGAACCTGATAAATTTTG 59.885 37.037 0.00 0.00 0.00 2.44
1591 1700 3.072330 TGGTGCTCAAGTGAACCTGATAA 59.928 43.478 4.28 0.00 33.65 1.75
1616 1725 9.527157 TGTAAGAAAATTTATGTCTTCCATCCA 57.473 29.630 6.84 0.00 34.86 3.41
1631 1740 6.434028 TGGCTACATTCTGCTGTAAGAAAATT 59.566 34.615 0.00 0.00 39.54 1.82
1636 1745 4.760530 ATGGCTACATTCTGCTGTAAGA 57.239 40.909 0.00 0.00 30.25 2.10
1639 1748 3.709141 TGGTATGGCTACATTCTGCTGTA 59.291 43.478 0.00 0.00 38.53 2.74
1674 1783 1.600511 TAACGCACCATCAGCCTCGA 61.601 55.000 0.00 0.00 0.00 4.04
1701 1810 5.356190 CCGTGACCACTATATACCGTATGAT 59.644 44.000 0.98 0.00 0.00 2.45
1710 1819 3.069016 CAGTTGGCCGTGACCACTATATA 59.931 47.826 0.00 0.00 40.19 0.86
1711 1820 2.116238 AGTTGGCCGTGACCACTATAT 58.884 47.619 0.00 0.00 40.19 0.86
1725 1834 6.099341 CCCATATAAGTTTTTGACAGTTGGC 58.901 40.000 0.00 0.00 0.00 4.52
1975 2141 4.202274 GCCCCTTCTCTTCCTGTTACTATC 60.202 50.000 0.00 0.00 0.00 2.08
1998 2171 0.962356 AATTGACAGAAGCTGGGGCG 60.962 55.000 0.00 0.00 44.37 6.13
2029 2202 5.149977 GTTGTGTCGTCTTGTACTACTACC 58.850 45.833 0.00 0.00 0.00 3.18
2080 2253 3.004734 AGTTTCGATTTTCAACTGGGCTG 59.995 43.478 0.00 0.00 29.36 4.85
2097 2270 0.248702 TTTTGCGGTGGCGAAGTTTC 60.249 50.000 0.00 0.00 43.26 2.78
2098 2271 0.173708 TTTTTGCGGTGGCGAAGTTT 59.826 45.000 0.00 0.00 43.26 2.66
2099 2272 0.248866 CTTTTTGCGGTGGCGAAGTT 60.249 50.000 0.00 0.00 43.26 2.66
2100 2273 1.098712 TCTTTTTGCGGTGGCGAAGT 61.099 50.000 0.00 0.00 43.26 3.01
2101 2274 0.030101 TTCTTTTTGCGGTGGCGAAG 59.970 50.000 0.00 0.00 43.26 3.79
2102 2275 0.456221 TTTCTTTTTGCGGTGGCGAA 59.544 45.000 0.00 0.00 44.10 4.70
2103 2276 0.456221 TTTTCTTTTTGCGGTGGCGA 59.544 45.000 0.00 0.00 44.10 5.54
2104 2277 1.281899 TTTTTCTTTTTGCGGTGGCG 58.718 45.000 0.00 0.00 44.10 5.69
2151 2324 4.340666 TGAAGTTTGCCTCTGTAATTTGCA 59.659 37.500 0.00 0.00 0.00 4.08
2162 2335 5.571784 TTGATGATGATGAAGTTTGCCTC 57.428 39.130 0.00 0.00 0.00 4.70
2248 2426 4.351054 CTCTTTGCCGGGCCCACT 62.351 66.667 24.92 0.00 0.00 4.00
2249 2427 4.660938 ACTCTTTGCCGGGCCCAC 62.661 66.667 24.92 14.37 0.00 4.61
2250 2428 4.659172 CACTCTTTGCCGGGCCCA 62.659 66.667 24.92 0.00 0.00 5.36
2277 2461 4.625028 GGCCAATTGCTTCCTGATATTTC 58.375 43.478 0.00 0.00 40.92 2.17
2278 2462 3.068590 CGGCCAATTGCTTCCTGATATTT 59.931 43.478 2.24 0.00 40.92 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.