Multiple sequence alignment - TraesCS7A01G432500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G432500 chr7A 100.000 3434 0 0 1 3434 626611640 626615073 0.000000e+00 6342
1 TraesCS7A01G432500 chr7A 88.384 198 23 0 1919 2116 626572936 626573133 4.430000e-59 239
2 TraesCS7A01G432500 chr7B 93.103 1653 94 8 285 1923 588285438 588287084 0.000000e+00 2403
3 TraesCS7A01G432500 chr7B 88.074 1677 182 10 262 1923 588261468 588263141 0.000000e+00 1973
4 TraesCS7A01G432500 chr7B 87.675 1639 179 11 300 1923 588239004 588240634 0.000000e+00 1886
5 TraesCS7A01G432500 chr7B 87.166 1683 188 12 262 1923 588252310 588253985 0.000000e+00 1886
6 TraesCS7A01G432500 chr7B 86.393 1220 156 8 711 1923 588084221 588085437 0.000000e+00 1325
7 TraesCS7A01G432500 chr7B 87.153 1152 138 2 770 1916 514062904 514061758 0.000000e+00 1299
8 TraesCS7A01G432500 chr7B 88.000 550 23 6 2648 3170 588287573 588288106 8.150000e-171 610
9 TraesCS7A01G432500 chr7B 94.706 340 15 2 1919 2258 588286948 588287284 3.040000e-145 525
10 TraesCS7A01G432500 chr7B 85.195 385 22 11 2255 2620 588287220 588287588 2.520000e-96 363
11 TraesCS7A01G432500 chr7B 95.133 226 9 2 3209 3434 588288109 588288332 4.220000e-94 355
12 TraesCS7A01G432500 chr7B 89.447 199 21 0 1921 2119 588263007 588263205 5.690000e-63 252
13 TraesCS7A01G432500 chr7B 88.945 199 22 0 1921 2119 588240500 588240698 2.650000e-61 246
14 TraesCS7A01G432500 chr7B 88.060 201 24 0 1919 2119 588085301 588085501 4.430000e-59 239
15 TraesCS7A01G432500 chr7B 88.060 201 24 0 1919 2119 588253849 588254049 4.430000e-59 239
16 TraesCS7A01G432500 chr7D 87.525 1491 171 7 440 1923 544849056 544850538 0.000000e+00 1709
17 TraesCS7A01G432500 chr7D 87.531 1219 140 7 712 1923 544778091 544779304 0.000000e+00 1399
18 TraesCS7A01G432500 chr7D 87.177 1123 133 2 799 1916 486241570 486240454 0.000000e+00 1266
19 TraesCS7A01G432500 chr7D 87.952 332 22 7 2300 2620 544850679 544851003 3.240000e-100 375
20 TraesCS7A01G432500 chr7D 86.620 284 35 2 1919 2202 544850402 544850682 9.250000e-81 311
21 TraesCS7A01G432500 chr7D 91.667 216 7 8 3227 3434 544851540 544851752 4.340000e-74 289
22 TraesCS7A01G432500 chr7D 90.050 201 20 0 1919 2119 486240584 486240384 9.450000e-66 261
23 TraesCS7A01G432500 chr7D 89.055 201 22 0 1919 2119 544779168 544779368 2.050000e-62 250
24 TraesCS7A01G432500 chr7D 90.446 157 11 4 2856 3010 544851220 544851374 1.620000e-48 204
25 TraesCS7A01G432500 chr7D 94.595 111 6 0 262 372 544848668 544848778 4.560000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G432500 chr7A 626611640 626615073 3433 False 6342.0 6342 100.000000 1 3434 1 chr7A.!!$F2 3433
1 TraesCS7A01G432500 chr7B 514061758 514062904 1146 True 1299.0 1299 87.153000 770 1916 1 chr7B.!!$R1 1146
2 TraesCS7A01G432500 chr7B 588261468 588263205 1737 False 1112.5 1973 88.760500 262 2119 2 chr7B.!!$F4 1857
3 TraesCS7A01G432500 chr7B 588239004 588240698 1694 False 1066.0 1886 88.310000 300 2119 2 chr7B.!!$F2 1819
4 TraesCS7A01G432500 chr7B 588252310 588254049 1739 False 1062.5 1886 87.613000 262 2119 2 chr7B.!!$F3 1857
5 TraesCS7A01G432500 chr7B 588285438 588288332 2894 False 851.2 2403 91.227400 285 3434 5 chr7B.!!$F5 3149
6 TraesCS7A01G432500 chr7B 588084221 588085501 1280 False 782.0 1325 87.226500 711 2119 2 chr7B.!!$F1 1408
7 TraesCS7A01G432500 chr7D 544778091 544779368 1277 False 824.5 1399 88.293000 712 2119 2 chr7D.!!$F1 1407
8 TraesCS7A01G432500 chr7D 486240384 486241570 1186 True 763.5 1266 88.613500 799 2119 2 chr7D.!!$R1 1320
9 TraesCS7A01G432500 chr7D 544848668 544851752 3084 False 510.0 1709 89.800833 262 3434 6 chr7D.!!$F2 3172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.026285 CAGAAAAATCTACCGCGCGG 59.974 55.0 44.88 44.88 42.03 6.46 F
1668 1900 0.389296 CGGTTGGTGAGACGTATGCA 60.389 55.0 0.00 0.00 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2231 0.101759 CGTACACCCCTATGTCACGG 59.898 60.0 0.0 0.0 33.85 4.94 R
2632 2883 0.030101 CTTCGCCACCGCAAAAAGAA 59.970 50.0 0.0 0.0 34.03 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.555527 TCTACTGTTAGCGAGCCTAGA 57.444 47.619 0.00 0.00 0.00 2.43
22 23 4.088056 TCTACTGTTAGCGAGCCTAGAT 57.912 45.455 0.00 0.00 0.00 1.98
23 24 4.066490 TCTACTGTTAGCGAGCCTAGATC 58.934 47.826 0.00 0.00 0.00 2.75
24 25 1.604755 ACTGTTAGCGAGCCTAGATCG 59.395 52.381 11.60 11.60 44.59 3.69
31 32 2.624169 GAGCCTAGATCGCTCGACT 58.376 57.895 5.49 0.00 43.04 4.18
32 33 0.237235 GAGCCTAGATCGCTCGACTG 59.763 60.000 5.49 0.00 43.04 3.51
33 34 0.179043 AGCCTAGATCGCTCGACTGA 60.179 55.000 0.00 0.00 0.00 3.41
34 35 0.040781 GCCTAGATCGCTCGACTGAC 60.041 60.000 0.00 0.00 0.00 3.51
35 36 0.233590 CCTAGATCGCTCGACTGACG 59.766 60.000 0.00 0.00 44.09 4.35
36 37 0.383737 CTAGATCGCTCGACTGACGC 60.384 60.000 0.00 0.00 42.26 5.19
37 38 1.087771 TAGATCGCTCGACTGACGCA 61.088 55.000 0.00 0.00 42.26 5.24
38 39 1.936880 GATCGCTCGACTGACGCAG 60.937 63.158 5.47 5.47 42.26 5.18
39 40 2.311080 GATCGCTCGACTGACGCAGA 62.311 60.000 12.77 0.00 42.26 4.26
40 41 2.316361 ATCGCTCGACTGACGCAGAG 62.316 60.000 12.77 7.13 42.26 3.35
41 42 2.871099 GCTCGACTGACGCAGAGA 59.129 61.111 12.77 10.21 42.26 3.10
42 43 1.226267 GCTCGACTGACGCAGAGAG 60.226 63.158 20.23 20.23 40.04 3.20
43 44 1.226267 CTCGACTGACGCAGAGAGC 60.226 63.158 12.77 0.00 42.26 4.09
54 55 2.586258 GCAGAGAGCGTCAAATAGGA 57.414 50.000 0.00 0.00 0.00 2.94
55 56 2.468831 GCAGAGAGCGTCAAATAGGAG 58.531 52.381 0.00 0.00 0.00 3.69
56 57 2.801342 GCAGAGAGCGTCAAATAGGAGG 60.801 54.545 0.00 0.00 0.00 4.30
57 58 2.690497 CAGAGAGCGTCAAATAGGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
58 59 2.955660 AGAGAGCGTCAAATAGGAGGAG 59.044 50.000 0.00 0.00 0.00 3.69
59 60 1.410882 AGAGCGTCAAATAGGAGGAGC 59.589 52.381 0.00 0.00 0.00 4.70
60 61 1.410882 GAGCGTCAAATAGGAGGAGCT 59.589 52.381 0.00 0.00 36.32 4.09
61 62 1.410882 AGCGTCAAATAGGAGGAGCTC 59.589 52.381 4.71 4.71 0.00 4.09
75 76 2.832201 GCTCCCAAGCTCCATGCC 60.832 66.667 0.00 0.00 45.55 4.40
76 77 2.123982 CTCCCAAGCTCCATGCCC 60.124 66.667 0.00 0.00 44.23 5.36
77 78 4.113815 TCCCAAGCTCCATGCCCG 62.114 66.667 0.00 0.00 44.23 6.13
78 79 4.113815 CCCAAGCTCCATGCCCGA 62.114 66.667 0.00 0.00 44.23 5.14
79 80 2.825836 CCAAGCTCCATGCCCGAC 60.826 66.667 0.00 0.00 44.23 4.79
80 81 2.046023 CAAGCTCCATGCCCGACA 60.046 61.111 0.00 0.00 44.23 4.35
81 82 2.045926 AAGCTCCATGCCCGACAC 60.046 61.111 0.00 0.00 44.23 3.67
82 83 3.958147 AAGCTCCATGCCCGACACG 62.958 63.158 0.00 0.00 44.23 4.49
102 103 4.892965 TGCAGGCCGGCTTGTGTT 62.893 61.111 35.37 9.10 34.04 3.32
103 104 4.347453 GCAGGCCGGCTTGTGTTG 62.347 66.667 35.37 19.96 0.00 3.33
104 105 4.347453 CAGGCCGGCTTGTGTTGC 62.347 66.667 29.11 8.74 0.00 4.17
105 106 4.586235 AGGCCGGCTTGTGTTGCT 62.586 61.111 28.56 9.32 0.00 3.91
106 107 3.605664 GGCCGGCTTGTGTTGCTT 61.606 61.111 28.56 0.00 0.00 3.91
107 108 2.417097 GCCGGCTTGTGTTGCTTT 59.583 55.556 22.15 0.00 0.00 3.51
108 109 1.227234 GCCGGCTTGTGTTGCTTTT 60.227 52.632 22.15 0.00 0.00 2.27
109 110 0.031449 GCCGGCTTGTGTTGCTTTTA 59.969 50.000 22.15 0.00 0.00 1.52
110 111 1.930371 GCCGGCTTGTGTTGCTTTTAG 60.930 52.381 22.15 0.00 0.00 1.85
111 112 1.335872 CCGGCTTGTGTTGCTTTTAGG 60.336 52.381 0.00 0.00 0.00 2.69
112 113 1.783284 GGCTTGTGTTGCTTTTAGGC 58.217 50.000 0.00 0.00 0.00 3.93
113 114 1.605457 GGCTTGTGTTGCTTTTAGGCC 60.605 52.381 0.00 0.00 0.00 5.19
114 115 1.341209 GCTTGTGTTGCTTTTAGGCCT 59.659 47.619 11.78 11.78 0.00 5.19
115 116 2.224042 GCTTGTGTTGCTTTTAGGCCTT 60.224 45.455 12.58 0.00 0.00 4.35
116 117 3.383761 CTTGTGTTGCTTTTAGGCCTTG 58.616 45.455 12.58 0.00 0.00 3.61
117 118 2.383855 TGTGTTGCTTTTAGGCCTTGT 58.616 42.857 12.58 0.00 0.00 3.16
118 119 2.100584 TGTGTTGCTTTTAGGCCTTGTG 59.899 45.455 12.58 0.00 0.00 3.33
119 120 1.686052 TGTTGCTTTTAGGCCTTGTGG 59.314 47.619 12.58 0.19 0.00 4.17
120 121 1.000843 GTTGCTTTTAGGCCTTGTGGG 59.999 52.381 12.58 0.00 38.36 4.61
138 139 4.778143 CCGTTTCGGCCTCCTGGG 62.778 72.222 0.00 0.00 41.17 4.45
139 140 3.702048 CGTTTCGGCCTCCTGGGA 61.702 66.667 0.00 0.00 37.23 4.37
140 141 2.998949 GTTTCGGCCTCCTGGGAT 59.001 61.111 0.00 0.00 37.23 3.85
141 142 1.153147 GTTTCGGCCTCCTGGGATC 60.153 63.158 0.00 0.00 37.23 3.36
142 143 1.306997 TTTCGGCCTCCTGGGATCT 60.307 57.895 0.00 0.00 37.23 2.75
143 144 0.914417 TTTCGGCCTCCTGGGATCTT 60.914 55.000 0.00 0.00 37.23 2.40
144 145 0.914417 TTCGGCCTCCTGGGATCTTT 60.914 55.000 0.00 0.00 37.23 2.52
145 146 0.914417 TCGGCCTCCTGGGATCTTTT 60.914 55.000 0.00 0.00 37.23 2.27
146 147 0.749454 CGGCCTCCTGGGATCTTTTG 60.749 60.000 0.00 0.00 37.23 2.44
147 148 0.332972 GGCCTCCTGGGATCTTTTGT 59.667 55.000 0.00 0.00 37.23 2.83
148 149 1.683319 GGCCTCCTGGGATCTTTTGTC 60.683 57.143 0.00 0.00 37.23 3.18
149 150 1.283321 GCCTCCTGGGATCTTTTGTCT 59.717 52.381 0.00 0.00 37.23 3.41
150 151 2.291217 GCCTCCTGGGATCTTTTGTCTT 60.291 50.000 0.00 0.00 37.23 3.01
151 152 3.815757 GCCTCCTGGGATCTTTTGTCTTT 60.816 47.826 0.00 0.00 37.23 2.52
152 153 4.013050 CCTCCTGGGATCTTTTGTCTTTC 58.987 47.826 0.00 0.00 37.23 2.62
153 154 4.507335 CCTCCTGGGATCTTTTGTCTTTCA 60.507 45.833 0.00 0.00 37.23 2.69
154 155 5.060427 TCCTGGGATCTTTTGTCTTTCAA 57.940 39.130 0.00 0.00 0.00 2.69
155 156 5.454062 TCCTGGGATCTTTTGTCTTTCAAA 58.546 37.500 0.00 0.00 43.24 2.69
156 157 5.536161 TCCTGGGATCTTTTGTCTTTCAAAG 59.464 40.000 0.00 0.00 45.14 2.77
157 158 5.536161 CCTGGGATCTTTTGTCTTTCAAAGA 59.464 40.000 0.00 0.00 45.14 2.52
158 159 6.210185 CCTGGGATCTTTTGTCTTTCAAAGAT 59.790 38.462 2.39 6.81 45.14 2.40
159 160 7.256083 CCTGGGATCTTTTGTCTTTCAAAGATT 60.256 37.037 2.39 0.00 45.14 2.40
160 161 7.661040 TGGGATCTTTTGTCTTTCAAAGATTC 58.339 34.615 2.39 6.51 45.14 2.52
161 162 7.287466 TGGGATCTTTTGTCTTTCAAAGATTCA 59.713 33.333 2.39 0.00 45.14 2.57
162 163 7.811713 GGGATCTTTTGTCTTTCAAAGATTCAG 59.188 37.037 2.39 0.00 45.14 3.02
163 164 8.571336 GGATCTTTTGTCTTTCAAAGATTCAGA 58.429 33.333 2.39 3.78 45.14 3.27
164 165 9.956720 GATCTTTTGTCTTTCAAAGATTCAGAA 57.043 29.630 2.39 0.00 45.14 3.02
211 212 2.894307 AACAGAAAAATCTACCGCGC 57.106 45.000 0.00 0.00 0.00 6.86
212 213 0.719465 ACAGAAAAATCTACCGCGCG 59.281 50.000 25.67 25.67 0.00 6.86
213 214 0.026285 CAGAAAAATCTACCGCGCGG 59.974 55.000 44.88 44.88 42.03 6.46
214 215 1.297378 GAAAAATCTACCGCGCGGC 60.297 57.895 46.22 24.27 39.32 6.53
215 216 2.642249 GAAAAATCTACCGCGCGGCC 62.642 60.000 46.22 20.38 39.32 6.13
231 232 3.747579 CCCAGCCCAGGCCTGAAT 61.748 66.667 34.91 16.17 43.17 2.57
232 233 2.123982 CCAGCCCAGGCCTGAATC 60.124 66.667 34.91 20.72 43.17 2.52
233 234 2.515523 CAGCCCAGGCCTGAATCG 60.516 66.667 34.91 16.95 43.17 3.34
234 235 3.801997 AGCCCAGGCCTGAATCGG 61.802 66.667 34.91 25.89 43.17 4.18
242 243 3.197790 CCTGAATCGGCCGCACAG 61.198 66.667 23.51 25.68 0.00 3.66
243 244 3.869272 CTGAATCGGCCGCACAGC 61.869 66.667 23.51 8.33 0.00 4.40
416 432 0.689412 GAGAGGGAGGTGGAAGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
491 717 0.617820 GGGTGAGGGAGCTGAAGGTA 60.618 60.000 0.00 0.00 0.00 3.08
502 728 4.091939 GAAGGTAAGGCGGCGGGT 62.092 66.667 9.78 0.00 0.00 5.28
508 734 2.425569 TAAGGCGGCGGGTAATCGT 61.426 57.895 9.78 0.00 0.00 3.73
524 750 4.477975 GTCCCGTGAGTCGCGAGG 62.478 72.222 26.86 23.37 39.94 4.63
658 885 0.929244 ATTGGGGTGGGAAGGATCTG 59.071 55.000 0.00 0.00 0.00 2.90
716 943 3.124297 CGCAGTCTTGGTCTCTTTGATTC 59.876 47.826 0.00 0.00 0.00 2.52
782 1009 3.254060 CTGTGGTATTTGTCTCTGTCCG 58.746 50.000 0.00 0.00 0.00 4.79
786 1013 2.418334 GGTATTTGTCTCTGTCCGTCCC 60.418 54.545 0.00 0.00 0.00 4.46
815 1042 0.908198 GTCCAGCTCCAGATTGGTCT 59.092 55.000 0.00 0.00 39.03 3.85
1107 1339 4.016444 GGCTAGTCACCATGGATGAAAAA 58.984 43.478 21.47 6.56 0.00 1.94
1182 1414 1.470098 GTGACAACCATGGAGCATGTC 59.530 52.381 21.47 23.56 39.94 3.06
1203 1435 0.611714 AACCTGTCCTAAACGGCGAT 59.388 50.000 16.62 0.00 32.41 4.58
1222 1454 3.124636 CGATGGGGTTCTTGAAAAGTACG 59.875 47.826 0.00 0.00 44.09 3.67
1258 1490 1.375326 GGAAAGCTTCCGAGGGTGT 59.625 57.895 0.00 0.00 40.59 4.16
1260 1492 1.675116 GGAAAGCTTCCGAGGGTGTAC 60.675 57.143 0.00 0.00 40.59 2.90
1344 1576 2.179427 TCGTCTGATCCATCAACAGGT 58.821 47.619 0.00 0.00 36.18 4.00
1564 1796 6.055588 AGGATTTTACCAGATATGGTTGACG 58.944 40.000 18.84 0.00 42.99 4.35
1568 1800 1.299541 CCAGATATGGTTGACGTGGC 58.700 55.000 0.00 0.00 0.00 5.01
1585 1817 2.116238 TGGCCCAGAGGTACTACATTC 58.884 52.381 0.00 0.00 41.55 2.67
1668 1900 0.389296 CGGTTGGTGAGACGTATGCA 60.389 55.000 0.00 0.00 0.00 3.96
1707 1939 3.380004 ACAAGGTTGATTTTGTCGAGCAA 59.620 39.130 0.00 0.00 40.52 3.91
1739 1971 1.071385 GATGGCAGGGATAGGTGACTG 59.929 57.143 0.00 0.00 43.88 3.51
1759 1991 2.097791 TGTGCGTTGTTTACTGGGAAAC 59.902 45.455 1.77 1.77 39.35 2.78
1764 1996 0.938713 TGTTTACTGGGAAACGCACG 59.061 50.000 4.29 0.00 41.36 5.34
1785 2017 3.120683 CGACATCTTGCTTTAGCGTGAAA 60.121 43.478 0.00 0.00 45.83 2.69
1901 2133 4.863131 GGTGTACGACTTGGAGAACAATAG 59.137 45.833 0.00 0.00 38.65 1.73
1906 2138 3.368427 CGACTTGGAGAACAATAGCAGGA 60.368 47.826 0.00 0.00 38.65 3.86
1907 2139 3.935828 GACTTGGAGAACAATAGCAGGAC 59.064 47.826 0.00 0.00 38.65 3.85
1908 2140 3.274288 CTTGGAGAACAATAGCAGGACC 58.726 50.000 0.00 0.00 38.65 4.46
1909 2141 2.265367 TGGAGAACAATAGCAGGACCA 58.735 47.619 0.00 0.00 0.00 4.02
1910 2142 2.237143 TGGAGAACAATAGCAGGACCAG 59.763 50.000 0.00 0.00 0.00 4.00
1911 2143 2.420687 GGAGAACAATAGCAGGACCAGG 60.421 54.545 0.00 0.00 0.00 4.45
1912 2144 2.237392 GAGAACAATAGCAGGACCAGGT 59.763 50.000 0.00 0.00 0.00 4.00
1913 2145 2.644798 AGAACAATAGCAGGACCAGGTT 59.355 45.455 0.00 0.00 0.00 3.50
1914 2146 2.496899 ACAATAGCAGGACCAGGTTG 57.503 50.000 0.00 0.00 0.00 3.77
1915 2147 1.004745 ACAATAGCAGGACCAGGTTGG 59.995 52.381 0.00 0.00 45.02 3.77
1926 2158 1.767759 CCAGGTTGGTTGGATCATCC 58.232 55.000 0.00 0.00 37.96 3.51
1927 2159 1.005805 CCAGGTTGGTTGGATCATCCA 59.994 52.381 0.66 0.66 46.61 3.41
1936 2168 2.651382 TGGATCATCCAGGCTTGATG 57.349 50.000 19.65 19.65 42.67 3.07
1937 2169 1.848388 TGGATCATCCAGGCTTGATGT 59.152 47.619 23.31 13.57 42.67 3.06
1938 2170 2.158711 TGGATCATCCAGGCTTGATGTC 60.159 50.000 23.31 19.21 42.67 3.06
1939 2171 2.158711 GGATCATCCAGGCTTGATGTCA 60.159 50.000 23.31 9.74 40.38 3.58
1940 2172 3.548770 GATCATCCAGGCTTGATGTCAA 58.451 45.455 23.31 9.12 40.38 3.18
1941 2173 3.438216 TCATCCAGGCTTGATGTCAAA 57.562 42.857 23.31 6.12 40.38 2.69
1942 2174 3.084039 TCATCCAGGCTTGATGTCAAAC 58.916 45.455 23.31 0.00 40.38 2.93
1943 2175 1.909700 TCCAGGCTTGATGTCAAACC 58.090 50.000 7.01 7.01 41.23 3.27
1944 2176 1.144708 TCCAGGCTTGATGTCAAACCA 59.855 47.619 15.39 0.00 42.86 3.67
1945 2177 2.173519 CCAGGCTTGATGTCAAACCAT 58.826 47.619 15.39 1.23 42.86 3.55
1946 2178 2.094390 CCAGGCTTGATGTCAAACCATG 60.094 50.000 15.39 10.80 42.86 3.66
1947 2179 2.559668 CAGGCTTGATGTCAAACCATGT 59.440 45.455 15.39 0.00 42.86 3.21
1948 2180 2.559668 AGGCTTGATGTCAAACCATGTG 59.440 45.455 15.39 0.00 42.86 3.21
1949 2181 2.297033 GGCTTGATGTCAAACCATGTGT 59.703 45.455 9.67 0.00 40.76 3.72
1950 2182 3.505680 GGCTTGATGTCAAACCATGTGTA 59.494 43.478 9.67 0.00 40.76 2.90
1951 2183 4.158394 GGCTTGATGTCAAACCATGTGTAT 59.842 41.667 9.67 0.00 40.76 2.29
1952 2184 5.336690 GGCTTGATGTCAAACCATGTGTATT 60.337 40.000 9.67 0.00 40.76 1.89
1953 2185 6.127758 GGCTTGATGTCAAACCATGTGTATTA 60.128 38.462 9.67 0.00 40.76 0.98
1954 2186 7.416664 GGCTTGATGTCAAACCATGTGTATTAT 60.417 37.037 9.67 0.00 40.76 1.28
1955 2187 8.620416 GCTTGATGTCAAACCATGTGTATTATA 58.380 33.333 0.00 0.00 35.15 0.98
1956 2188 9.935682 CTTGATGTCAAACCATGTGTATTATAC 57.064 33.333 0.00 0.00 35.15 1.47
1957 2189 9.679661 TTGATGTCAAACCATGTGTATTATACT 57.320 29.630 3.92 0.00 32.11 2.12
1958 2190 9.325198 TGATGTCAAACCATGTGTATTATACTC 57.675 33.333 3.92 0.93 0.00 2.59
1959 2191 9.325198 GATGTCAAACCATGTGTATTATACTCA 57.675 33.333 9.16 9.16 36.71 3.41
1960 2192 9.851686 ATGTCAAACCATGTGTATTATACTCAT 57.148 29.630 12.46 12.46 41.89 2.90
1985 2217 9.722184 ATGATGATCATGAAGATTTATTCGACT 57.278 29.630 14.30 0.00 35.43 4.18
1986 2218 8.985805 TGATGATCATGAAGATTTATTCGACTG 58.014 33.333 14.30 0.00 37.00 3.51
1987 2219 7.182361 TGATCATGAAGATTTATTCGACTGC 57.818 36.000 0.00 0.00 37.00 4.40
1988 2220 5.641777 TCATGAAGATTTATTCGACTGCG 57.358 39.130 0.00 0.00 39.35 5.18
1989 2221 5.348164 TCATGAAGATTTATTCGACTGCGA 58.652 37.500 0.00 0.00 46.33 5.10
1990 2222 6.479990 ATCATGAAGATTTATTCGACTGCGAA 59.520 34.615 0.00 3.08 46.94 4.70
1991 2223 7.307042 ATCATGAAGATTTATTCGACTGCGAAG 60.307 37.037 0.00 0.00 46.46 3.79
1998 2230 3.946950 TCGACTGCGAAGATGATCC 57.053 52.632 0.00 0.00 44.78 3.36
1999 2231 0.385751 TCGACTGCGAAGATGATCCC 59.614 55.000 0.00 0.00 44.78 3.85
2000 2232 0.598680 CGACTGCGAAGATGATCCCC 60.599 60.000 0.00 0.00 40.82 4.81
2001 2233 0.598680 GACTGCGAAGATGATCCCCG 60.599 60.000 0.00 0.00 0.00 5.73
2002 2234 1.330655 ACTGCGAAGATGATCCCCGT 61.331 55.000 0.00 0.00 0.00 5.28
2003 2235 0.877649 CTGCGAAGATGATCCCCGTG 60.878 60.000 6.07 0.00 0.00 4.94
2004 2236 1.326951 TGCGAAGATGATCCCCGTGA 61.327 55.000 6.07 0.00 0.00 4.35
2005 2237 0.876342 GCGAAGATGATCCCCGTGAC 60.876 60.000 6.07 0.00 0.00 3.67
2006 2238 0.459899 CGAAGATGATCCCCGTGACA 59.540 55.000 0.00 0.00 0.00 3.58
2007 2239 1.069204 CGAAGATGATCCCCGTGACAT 59.931 52.381 0.00 0.00 0.00 3.06
2008 2240 2.296190 CGAAGATGATCCCCGTGACATA 59.704 50.000 0.00 0.00 0.00 2.29
2009 2241 3.612717 CGAAGATGATCCCCGTGACATAG 60.613 52.174 0.00 0.00 0.00 2.23
2010 2242 2.251818 AGATGATCCCCGTGACATAGG 58.748 52.381 0.00 0.00 0.00 2.57
2018 2250 0.101759 CCGTGACATAGGGGTGTACG 59.898 60.000 0.00 0.00 33.26 3.67
2019 2251 1.097232 CGTGACATAGGGGTGTACGA 58.903 55.000 0.00 0.00 34.28 3.43
2020 2252 1.202222 CGTGACATAGGGGTGTACGAC 60.202 57.143 0.00 0.00 34.28 4.34
2021 2253 2.097825 GTGACATAGGGGTGTACGACT 58.902 52.381 0.00 0.00 31.16 4.18
2022 2254 2.494870 GTGACATAGGGGTGTACGACTT 59.505 50.000 0.00 0.00 31.16 3.01
2023 2255 2.494471 TGACATAGGGGTGTACGACTTG 59.506 50.000 0.00 0.00 31.16 3.16
2024 2256 1.829222 ACATAGGGGTGTACGACTTGG 59.171 52.381 0.00 0.00 0.00 3.61
2025 2257 2.104967 CATAGGGGTGTACGACTTGGA 58.895 52.381 0.00 0.00 0.00 3.53
2026 2258 1.843368 TAGGGGTGTACGACTTGGAG 58.157 55.000 0.00 0.00 0.00 3.86
2027 2259 0.113776 AGGGGTGTACGACTTGGAGA 59.886 55.000 0.00 0.00 0.00 3.71
2028 2260 0.971386 GGGGTGTACGACTTGGAGAA 59.029 55.000 0.00 0.00 0.00 2.87
2029 2261 1.337541 GGGGTGTACGACTTGGAGAAC 60.338 57.143 0.00 0.00 0.00 3.01
2030 2262 1.342174 GGGTGTACGACTTGGAGAACA 59.658 52.381 0.00 0.00 0.00 3.18
2031 2263 2.224113 GGGTGTACGACTTGGAGAACAA 60.224 50.000 0.00 0.00 37.55 2.83
2032 2264 3.556423 GGGTGTACGACTTGGAGAACAAT 60.556 47.826 0.00 0.00 38.65 2.71
2033 2265 4.322198 GGGTGTACGACTTGGAGAACAATA 60.322 45.833 0.00 0.00 38.65 1.90
2034 2266 4.863131 GGTGTACGACTTGGAGAACAATAG 59.137 45.833 0.00 0.00 38.65 1.73
2035 2267 4.326548 GTGTACGACTTGGAGAACAATAGC 59.673 45.833 0.00 0.00 38.65 2.97
2036 2268 3.678056 ACGACTTGGAGAACAATAGCA 57.322 42.857 0.00 0.00 38.65 3.49
2037 2269 3.589988 ACGACTTGGAGAACAATAGCAG 58.410 45.455 0.00 0.00 38.65 4.24
2038 2270 2.932614 CGACTTGGAGAACAATAGCAGG 59.067 50.000 0.00 0.00 38.65 4.85
2043 2275 2.237143 TGGAGAACAATAGCAGGACCAG 59.763 50.000 0.00 0.00 0.00 4.00
2142 2374 5.994054 TCAGTTGAACTTCCTCTTCAATCTG 59.006 40.000 0.00 12.41 39.28 2.90
2148 2380 6.042093 TGAACTTCCTCTTCAATCTGTACTGT 59.958 38.462 0.00 0.00 0.00 3.55
2157 2389 6.435591 TCTTCAATCTGTACTGTCTCAGATGT 59.564 38.462 20.82 12.65 46.47 3.06
2158 2390 6.596309 TCAATCTGTACTGTCTCAGATGTT 57.404 37.500 20.82 10.43 46.47 2.71
2159 2391 7.703058 TCAATCTGTACTGTCTCAGATGTTA 57.297 36.000 20.82 11.67 46.47 2.41
2165 2397 7.883833 TCTGTACTGTCTCAGATGTTACTACTT 59.116 37.037 10.22 0.00 36.04 2.24
2201 2433 2.322371 GCAAGAAGCACCTTTTCTCG 57.678 50.000 0.00 0.00 44.79 4.04
2211 2443 4.035684 GCACCTTTTCTCGTTTCAGTTTC 58.964 43.478 0.00 0.00 0.00 2.78
2220 2452 8.706492 TTTCTCGTTTCAGTTTCTAGTGTTTA 57.294 30.769 0.00 0.00 0.00 2.01
2239 2471 9.944376 AGTGTTTAGAAATATGCTTCTTACAGA 57.056 29.630 0.00 0.00 36.95 3.41
2253 2485 8.551205 TGCTTCTTACAGAATAAGATAAATGCG 58.449 33.333 0.00 0.00 33.13 4.73
2254 2486 7.532209 GCTTCTTACAGAATAAGATAAATGCGC 59.468 37.037 0.00 0.00 33.13 6.09
2255 2487 8.662781 TTCTTACAGAATAAGATAAATGCGCT 57.337 30.769 9.73 0.00 34.02 5.92
2256 2488 8.662781 TCTTACAGAATAAGATAAATGCGCTT 57.337 30.769 9.73 0.00 0.00 4.68
2257 2489 8.765219 TCTTACAGAATAAGATAAATGCGCTTC 58.235 33.333 9.73 0.00 0.00 3.86
2258 2490 8.662781 TTACAGAATAAGATAAATGCGCTTCT 57.337 30.769 9.73 1.78 0.00 2.85
2259 2491 7.559590 ACAGAATAAGATAAATGCGCTTCTT 57.440 32.000 9.73 11.44 33.29 2.52
2260 2492 7.634522 ACAGAATAAGATAAATGCGCTTCTTC 58.365 34.615 9.73 1.20 31.29 2.87
2261 2493 7.497249 ACAGAATAAGATAAATGCGCTTCTTCT 59.503 33.333 9.73 3.63 36.27 2.85
2262 2494 8.008844 CAGAATAAGATAAATGCGCTTCTTCTC 58.991 37.037 9.73 9.35 34.73 2.87
2263 2495 7.712639 AGAATAAGATAAATGCGCTTCTTCTCA 59.287 33.333 9.73 0.00 32.85 3.27
2264 2496 7.976135 ATAAGATAAATGCGCTTCTTCTCAT 57.024 32.000 9.73 0.00 31.29 2.90
2265 2497 6.690194 AAGATAAATGCGCTTCTTCTCATT 57.310 33.333 9.73 0.00 0.00 2.57
2266 2498 6.690194 AGATAAATGCGCTTCTTCTCATTT 57.310 33.333 9.73 6.13 40.77 2.32
2267 2499 6.723282 AGATAAATGCGCTTCTTCTCATTTC 58.277 36.000 9.73 0.00 39.18 2.17
2268 2500 4.771590 AAATGCGCTTCTTCTCATTTCA 57.228 36.364 9.73 0.00 35.04 2.69
2269 2501 4.978083 AATGCGCTTCTTCTCATTTCAT 57.022 36.364 9.73 0.00 0.00 2.57
2270 2502 4.978083 ATGCGCTTCTTCTCATTTCATT 57.022 36.364 9.73 0.00 0.00 2.57
2271 2503 4.346734 TGCGCTTCTTCTCATTTCATTC 57.653 40.909 9.73 0.00 0.00 2.67
2272 2504 4.005650 TGCGCTTCTTCTCATTTCATTCT 58.994 39.130 9.73 0.00 0.00 2.40
2273 2505 4.456911 TGCGCTTCTTCTCATTTCATTCTT 59.543 37.500 9.73 0.00 0.00 2.52
2274 2506 5.048504 TGCGCTTCTTCTCATTTCATTCTTT 60.049 36.000 9.73 0.00 0.00 2.52
2275 2507 5.860716 GCGCTTCTTCTCATTTCATTCTTTT 59.139 36.000 0.00 0.00 0.00 2.27
2276 2508 7.023575 GCGCTTCTTCTCATTTCATTCTTTTA 58.976 34.615 0.00 0.00 0.00 1.52
2277 2509 7.217825 GCGCTTCTTCTCATTTCATTCTTTTAG 59.782 37.037 0.00 0.00 0.00 1.85
2278 2510 8.233190 CGCTTCTTCTCATTTCATTCTTTTAGT 58.767 33.333 0.00 0.00 0.00 2.24
2279 2511 9.339492 GCTTCTTCTCATTTCATTCTTTTAGTG 57.661 33.333 0.00 0.00 0.00 2.74
2296 2528 9.965824 TCTTTTAGTGTTTTGAAATCTGAATCC 57.034 29.630 0.00 0.00 0.00 3.01
2297 2529 9.196552 CTTTTAGTGTTTTGAAATCTGAATCCC 57.803 33.333 0.00 0.00 0.00 3.85
2298 2530 7.831691 TTAGTGTTTTGAAATCTGAATCCCA 57.168 32.000 0.00 0.00 0.00 4.37
2333 2565 2.908688 AAATGCGCTTCCAAACCTTT 57.091 40.000 9.73 0.00 0.00 3.11
2346 2578 4.114794 CCAAACCTTTTGCTTTGTCTGAG 58.885 43.478 0.00 0.00 0.00 3.35
2368 2600 6.017934 TGAGTTGTGTGTTCAGAAATAGCTTC 60.018 38.462 0.00 0.00 0.00 3.86
2383 2629 8.669243 AGAAATAGCTTCAGTGTGCTAATTAAC 58.331 33.333 18.83 9.95 43.72 2.01
2415 2661 2.425143 TGGCAGGATTTCCAGATGAC 57.575 50.000 0.00 0.00 38.89 3.06
2449 2695 4.327680 GCAATAGGATTAAGCCCGAAGAT 58.672 43.478 6.03 0.00 0.00 2.40
2474 2720 3.068590 CGGCCAATTGCTTCCTGATATTT 59.931 43.478 2.24 0.00 40.92 1.40
2475 2721 4.625028 GGCCAATTGCTTCCTGATATTTC 58.375 43.478 0.00 0.00 40.92 2.17
2502 2748 4.659172 CACTCTTTGCCGGGCCCA 62.659 66.667 24.92 0.00 0.00 5.36
2503 2749 4.660938 ACTCTTTGCCGGGCCCAC 62.661 66.667 24.92 14.37 0.00 4.61
2504 2750 4.351054 CTCTTTGCCGGGCCCACT 62.351 66.667 24.92 0.00 0.00 4.00
2590 2841 5.571784 TTGATGATGATGAAGTTTGCCTC 57.428 39.130 0.00 0.00 0.00 4.70
2601 2852 4.340666 TGAAGTTTGCCTCTGTAATTTGCA 59.659 37.500 0.00 0.00 0.00 4.08
2604 2855 5.473039 AGTTTGCCTCTGTAATTTGCATTC 58.527 37.500 0.00 0.00 0.00 2.67
2605 2856 3.763097 TGCCTCTGTAATTTGCATTCG 57.237 42.857 0.00 0.00 0.00 3.34
2606 2857 3.342719 TGCCTCTGTAATTTGCATTCGA 58.657 40.909 0.00 0.00 0.00 3.71
2607 2858 3.755905 TGCCTCTGTAATTTGCATTCGAA 59.244 39.130 0.00 0.00 0.00 3.71
2608 2859 4.142622 TGCCTCTGTAATTTGCATTCGAAG 60.143 41.667 3.35 0.00 0.00 3.79
2609 2860 4.142600 GCCTCTGTAATTTGCATTCGAAGT 60.143 41.667 3.35 0.00 0.00 3.01
2610 2861 5.619981 GCCTCTGTAATTTGCATTCGAAGTT 60.620 40.000 3.35 0.00 0.00 2.66
2611 2862 6.381801 CCTCTGTAATTTGCATTCGAAGTTT 58.618 36.000 3.35 0.00 0.00 2.66
2612 2863 6.524586 CCTCTGTAATTTGCATTCGAAGTTTC 59.475 38.462 3.35 0.00 0.00 2.78
2672 2923 3.004734 AGTTTCGATTTTCAACTGGGCTG 59.995 43.478 0.00 0.00 29.36 4.85
2723 2974 5.149977 GTTGTGTCGTCTTGTACTACTACC 58.850 45.833 0.00 0.00 0.00 3.18
2754 3005 0.962356 AATTGACAGAAGCTGGGGCG 60.962 55.000 0.00 0.00 44.37 6.13
2777 3035 4.202274 GCCCCTTCTCTTCCTGTTACTATC 60.202 50.000 0.00 0.00 0.00 2.08
3027 3342 6.099341 CCCATATAAGTTTTTGACAGTTGGC 58.901 40.000 0.00 0.00 0.00 4.52
3041 3356 2.116238 AGTTGGCCGTGACCACTATAT 58.884 47.619 0.00 0.00 40.19 0.86
3042 3357 3.069016 CAGTTGGCCGTGACCACTATATA 59.931 47.826 0.00 0.00 40.19 0.86
3051 3366 5.356190 CCGTGACCACTATATACCGTATGAT 59.644 44.000 0.98 0.00 0.00 2.45
3078 3393 1.600511 TAACGCACCATCAGCCTCGA 61.601 55.000 0.00 0.00 0.00 4.04
3113 3428 3.709141 TGGTATGGCTACATTCTGCTGTA 59.291 43.478 0.00 0.00 38.53 2.74
3116 3431 4.760530 ATGGCTACATTCTGCTGTAAGA 57.239 40.909 0.00 0.00 30.25 2.10
3121 3436 6.434028 TGGCTACATTCTGCTGTAAGAAAATT 59.566 34.615 0.00 0.00 39.54 1.82
3161 3476 3.072330 TGGTGCTCAAGTGAACCTGATAA 59.928 43.478 4.28 0.00 33.65 1.75
3166 3481 7.147976 GTGCTCAAGTGAACCTGATAAATTTT 58.852 34.615 0.00 0.00 0.00 1.82
3168 3483 6.587608 GCTCAAGTGAACCTGATAAATTTTGG 59.412 38.462 0.00 0.00 0.00 3.28
3169 3484 7.595819 TCAAGTGAACCTGATAAATTTTGGT 57.404 32.000 0.00 0.00 0.00 3.67
3170 3485 8.698973 TCAAGTGAACCTGATAAATTTTGGTA 57.301 30.769 0.00 0.00 0.00 3.25
3173 3488 8.293699 AGTGAACCTGATAAATTTTGGTATCC 57.706 34.615 0.00 0.00 0.00 2.59
3175 3490 8.749354 GTGAACCTGATAAATTTTGGTATCCTT 58.251 33.333 0.00 0.00 0.00 3.36
3176 3491 8.748412 TGAACCTGATAAATTTTGGTATCCTTG 58.252 33.333 0.00 0.00 0.00 3.61
3178 3493 8.293699 ACCTGATAAATTTTGGTATCCTTGTC 57.706 34.615 0.00 0.00 0.00 3.18
3180 3495 8.190784 CCTGATAAATTTTGGTATCCTTGTCAC 58.809 37.037 0.00 0.00 0.00 3.67
3181 3496 7.757526 TGATAAATTTTGGTATCCTTGTCACG 58.242 34.615 0.00 0.00 0.00 4.35
3182 3497 4.434713 AATTTTGGTATCCTTGTCACGC 57.565 40.909 0.00 0.00 0.00 5.34
3183 3498 2.851263 TTTGGTATCCTTGTCACGCT 57.149 45.000 0.00 0.00 0.00 5.07
3184 3499 2.093306 TTGGTATCCTTGTCACGCTG 57.907 50.000 0.00 0.00 0.00 5.18
3185 3500 0.973632 TGGTATCCTTGTCACGCTGT 59.026 50.000 0.00 0.00 0.00 4.40
3187 3502 1.204941 GGTATCCTTGTCACGCTGTCT 59.795 52.381 0.00 0.00 0.00 3.41
3189 3504 2.949451 ATCCTTGTCACGCTGTCTAG 57.051 50.000 0.00 0.00 0.00 2.43
3190 3505 1.905637 TCCTTGTCACGCTGTCTAGA 58.094 50.000 0.00 0.00 0.00 2.43
3191 3506 2.447443 TCCTTGTCACGCTGTCTAGAT 58.553 47.619 0.00 0.00 0.00 1.98
3192 3507 2.164422 TCCTTGTCACGCTGTCTAGATG 59.836 50.000 0.00 0.00 0.00 2.90
3193 3508 2.534298 CTTGTCACGCTGTCTAGATGG 58.466 52.381 0.00 0.00 0.00 3.51
3194 3509 1.545841 TGTCACGCTGTCTAGATGGT 58.454 50.000 0.00 0.00 0.00 3.55
3195 3510 2.718563 TGTCACGCTGTCTAGATGGTA 58.281 47.619 0.00 0.00 0.00 3.25
3198 3513 1.338337 CACGCTGTCTAGATGGTAGGG 59.662 57.143 0.00 4.04 0.00 3.53
3199 3514 0.962489 CGCTGTCTAGATGGTAGGGG 59.038 60.000 0.00 0.00 0.00 4.79
3200 3515 1.478837 CGCTGTCTAGATGGTAGGGGA 60.479 57.143 0.00 0.00 0.00 4.81
3201 3516 2.679082 GCTGTCTAGATGGTAGGGGAA 58.321 52.381 0.00 0.00 0.00 3.97
3202 3517 3.039011 GCTGTCTAGATGGTAGGGGAAA 58.961 50.000 0.00 0.00 0.00 3.13
3203 3518 3.181464 GCTGTCTAGATGGTAGGGGAAAC 60.181 52.174 0.00 0.00 0.00 2.78
3204 3519 4.290942 CTGTCTAGATGGTAGGGGAAACT 58.709 47.826 0.00 0.00 0.00 2.66
3205 3520 5.455872 CTGTCTAGATGGTAGGGGAAACTA 58.544 45.833 0.00 0.00 0.00 2.24
3206 3521 5.455872 TGTCTAGATGGTAGGGGAAACTAG 58.544 45.833 0.00 0.00 0.00 2.57
3207 3522 4.281435 GTCTAGATGGTAGGGGAAACTAGC 59.719 50.000 0.00 0.00 40.81 3.42
3281 3623 7.703058 ACCCCTGATTTTACTGACAATAAAG 57.297 36.000 0.00 0.00 0.00 1.85
3299 3641 2.338577 AGCAAGTCTGAACTGCAGTT 57.661 45.000 31.57 31.57 45.14 3.16
3313 3655 1.137282 TGCAGTTGGTACGTTCAGACA 59.863 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.088056 TCTAGGCTCGCTAACAGTAGAT 57.912 45.455 0.00 0.00 0.00 1.98
1 2 3.555527 TCTAGGCTCGCTAACAGTAGA 57.444 47.619 0.00 0.00 0.00 2.59
2 3 3.120477 CGATCTAGGCTCGCTAACAGTAG 60.120 52.174 0.00 0.00 0.00 2.57
3 4 2.806818 CGATCTAGGCTCGCTAACAGTA 59.193 50.000 0.00 0.00 0.00 2.74
4 5 1.604755 CGATCTAGGCTCGCTAACAGT 59.395 52.381 0.00 0.00 0.00 3.55
5 6 2.323939 CGATCTAGGCTCGCTAACAG 57.676 55.000 0.00 0.00 0.00 3.16
14 15 0.179043 TCAGTCGAGCGATCTAGGCT 60.179 55.000 0.00 0.00 45.00 4.58
15 16 0.040781 GTCAGTCGAGCGATCTAGGC 60.041 60.000 0.00 0.00 0.00 3.93
16 17 0.233590 CGTCAGTCGAGCGATCTAGG 59.766 60.000 0.00 0.00 42.86 3.02
17 18 0.383737 GCGTCAGTCGAGCGATCTAG 60.384 60.000 0.00 0.00 42.86 2.43
18 19 1.087771 TGCGTCAGTCGAGCGATCTA 61.088 55.000 0.00 0.00 42.86 1.98
19 20 2.316361 CTGCGTCAGTCGAGCGATCT 62.316 60.000 0.00 0.00 42.86 2.75
20 21 1.936880 CTGCGTCAGTCGAGCGATC 60.937 63.158 0.00 0.00 42.86 3.69
21 22 2.101185 CTGCGTCAGTCGAGCGAT 59.899 61.111 0.00 0.00 42.86 4.58
22 23 3.028366 CTCTGCGTCAGTCGAGCGA 62.028 63.158 6.72 0.00 42.86 4.93
23 24 2.575525 CTCTGCGTCAGTCGAGCG 60.576 66.667 6.72 0.00 42.86 5.03
24 25 1.226267 CTCTCTGCGTCAGTCGAGC 60.226 63.158 6.72 0.00 42.86 5.03
25 26 1.226267 GCTCTCTGCGTCAGTCGAG 60.226 63.158 16.23 16.23 42.86 4.04
26 27 2.871099 GCTCTCTGCGTCAGTCGA 59.129 61.111 6.72 0.00 42.86 4.20
35 36 2.468831 CTCCTATTTGACGCTCTCTGC 58.531 52.381 0.00 0.00 38.57 4.26
36 37 2.690497 TCCTCCTATTTGACGCTCTCTG 59.310 50.000 0.00 0.00 0.00 3.35
37 38 2.955660 CTCCTCCTATTTGACGCTCTCT 59.044 50.000 0.00 0.00 0.00 3.10
38 39 2.544903 GCTCCTCCTATTTGACGCTCTC 60.545 54.545 0.00 0.00 0.00 3.20
39 40 1.410882 GCTCCTCCTATTTGACGCTCT 59.589 52.381 0.00 0.00 0.00 4.09
40 41 1.410882 AGCTCCTCCTATTTGACGCTC 59.589 52.381 0.00 0.00 0.00 5.03
41 42 1.410882 GAGCTCCTCCTATTTGACGCT 59.589 52.381 0.87 0.00 0.00 5.07
42 43 1.539280 GGAGCTCCTCCTATTTGACGC 60.539 57.143 26.25 0.00 46.41 5.19
43 44 2.517650 GGAGCTCCTCCTATTTGACG 57.482 55.000 26.25 0.00 46.41 4.35
59 60 2.123982 GGGCATGGAGCTTGGGAG 60.124 66.667 0.00 0.00 44.79 4.30
60 61 4.113815 CGGGCATGGAGCTTGGGA 62.114 66.667 0.00 0.00 44.79 4.37
61 62 4.113815 TCGGGCATGGAGCTTGGG 62.114 66.667 0.00 0.00 44.79 4.12
62 63 2.825836 GTCGGGCATGGAGCTTGG 60.826 66.667 0.00 0.00 44.79 3.61
63 64 2.046023 TGTCGGGCATGGAGCTTG 60.046 61.111 0.00 0.00 44.79 4.01
64 65 2.045926 GTGTCGGGCATGGAGCTT 60.046 61.111 0.00 0.00 44.79 3.74
65 66 4.457496 CGTGTCGGGCATGGAGCT 62.457 66.667 0.00 0.00 44.79 4.09
85 86 4.892965 AACACAAGCCGGCCTGCA 62.893 61.111 25.00 0.00 0.00 4.41
86 87 4.347453 CAACACAAGCCGGCCTGC 62.347 66.667 25.00 11.82 0.00 4.85
87 88 4.347453 GCAACACAAGCCGGCCTG 62.347 66.667 26.15 24.73 0.00 4.85
88 89 4.586235 AGCAACACAAGCCGGCCT 62.586 61.111 26.15 7.54 0.00 5.19
89 90 2.642996 AAAAGCAACACAAGCCGGCC 62.643 55.000 26.15 4.59 0.00 6.13
90 91 0.031449 TAAAAGCAACACAAGCCGGC 59.969 50.000 21.89 21.89 0.00 6.13
91 92 1.335872 CCTAAAAGCAACACAAGCCGG 60.336 52.381 0.00 0.00 0.00 6.13
92 93 1.930371 GCCTAAAAGCAACACAAGCCG 60.930 52.381 0.00 0.00 0.00 5.52
93 94 1.605457 GGCCTAAAAGCAACACAAGCC 60.605 52.381 0.00 0.00 0.00 4.35
94 95 1.341209 AGGCCTAAAAGCAACACAAGC 59.659 47.619 1.29 0.00 0.00 4.01
95 96 3.181476 ACAAGGCCTAAAAGCAACACAAG 60.181 43.478 5.16 0.00 0.00 3.16
96 97 2.763448 ACAAGGCCTAAAAGCAACACAA 59.237 40.909 5.16 0.00 0.00 3.33
97 98 2.100584 CACAAGGCCTAAAAGCAACACA 59.899 45.455 5.16 0.00 0.00 3.72
98 99 2.545742 CCACAAGGCCTAAAAGCAACAC 60.546 50.000 5.16 0.00 0.00 3.32
99 100 1.686052 CCACAAGGCCTAAAAGCAACA 59.314 47.619 5.16 0.00 0.00 3.33
100 101 1.000843 CCCACAAGGCCTAAAAGCAAC 59.999 52.381 5.16 0.00 0.00 4.17
101 102 1.337118 CCCACAAGGCCTAAAAGCAA 58.663 50.000 5.16 0.00 0.00 3.91
102 103 3.050089 CCCACAAGGCCTAAAAGCA 57.950 52.632 5.16 0.00 0.00 3.91
112 113 3.361977 CCGAAACGGCCCACAAGG 61.362 66.667 0.00 0.00 41.17 3.61
122 123 2.925162 GATCCCAGGAGGCCGAAACG 62.925 65.000 0.00 0.00 34.51 3.60
123 124 1.153147 GATCCCAGGAGGCCGAAAC 60.153 63.158 0.00 0.00 34.51 2.78
124 125 0.914417 AAGATCCCAGGAGGCCGAAA 60.914 55.000 0.00 0.00 34.51 3.46
125 126 0.914417 AAAGATCCCAGGAGGCCGAA 60.914 55.000 0.00 0.00 34.51 4.30
126 127 0.914417 AAAAGATCCCAGGAGGCCGA 60.914 55.000 0.00 0.00 34.51 5.54
127 128 0.749454 CAAAAGATCCCAGGAGGCCG 60.749 60.000 0.00 0.00 34.51 6.13
128 129 0.332972 ACAAAAGATCCCAGGAGGCC 59.667 55.000 0.00 0.00 34.51 5.19
129 130 1.283321 AGACAAAAGATCCCAGGAGGC 59.717 52.381 0.00 0.00 34.51 4.70
130 131 3.728385 AAGACAAAAGATCCCAGGAGG 57.272 47.619 0.00 0.00 0.00 4.30
131 132 4.655963 TGAAAGACAAAAGATCCCAGGAG 58.344 43.478 0.00 0.00 0.00 3.69
132 133 4.722526 TGAAAGACAAAAGATCCCAGGA 57.277 40.909 0.00 0.00 0.00 3.86
133 134 5.536161 TCTTTGAAAGACAAAAGATCCCAGG 59.464 40.000 3.02 0.00 45.97 4.45
134 135 6.639632 TCTTTGAAAGACAAAAGATCCCAG 57.360 37.500 3.02 0.00 45.97 4.45
135 136 7.287466 TGAATCTTTGAAAGACAAAAGATCCCA 59.713 33.333 10.18 9.00 45.97 4.37
136 137 7.661040 TGAATCTTTGAAAGACAAAAGATCCC 58.339 34.615 10.18 7.10 45.97 3.85
137 138 8.571336 TCTGAATCTTTGAAAGACAAAAGATCC 58.429 33.333 10.18 0.30 45.97 3.36
138 139 9.956720 TTCTGAATCTTTGAAAGACAAAAGATC 57.043 29.630 10.18 1.80 45.97 2.75
189 190 3.978855 GCGCGGTAGATTTTTCTGTTTTT 59.021 39.130 8.83 0.00 0.00 1.94
190 191 3.561503 GCGCGGTAGATTTTTCTGTTTT 58.438 40.909 8.83 0.00 0.00 2.43
191 192 2.412325 CGCGCGGTAGATTTTTCTGTTT 60.412 45.455 24.84 0.00 0.00 2.83
192 193 1.127951 CGCGCGGTAGATTTTTCTGTT 59.872 47.619 24.84 0.00 0.00 3.16
193 194 0.719465 CGCGCGGTAGATTTTTCTGT 59.281 50.000 24.84 0.00 0.00 3.41
194 195 0.026285 CCGCGCGGTAGATTTTTCTG 59.974 55.000 39.71 10.24 0.00 3.02
195 196 1.702491 GCCGCGCGGTAGATTTTTCT 61.702 55.000 45.02 0.00 37.65 2.52
196 197 1.297378 GCCGCGCGGTAGATTTTTC 60.297 57.895 45.02 24.49 37.65 2.29
197 198 2.757056 GGCCGCGCGGTAGATTTTT 61.757 57.895 45.02 0.00 37.65 1.94
198 199 3.199891 GGCCGCGCGGTAGATTTT 61.200 61.111 45.02 0.00 37.65 1.82
217 218 3.801997 CCGATTCAGGCCTGGGCT 61.802 66.667 32.23 18.27 41.60 5.19
225 226 3.197790 CTGTGCGGCCGATTCAGG 61.198 66.667 33.48 9.17 0.00 3.86
226 227 3.869272 GCTGTGCGGCCGATTCAG 61.869 66.667 33.48 29.76 0.00 3.02
461 687 3.066190 CTCACCCACGTCGGCCTA 61.066 66.667 0.00 0.00 0.00 3.93
465 691 3.760035 CTCCCTCACCCACGTCGG 61.760 72.222 0.00 0.00 0.00 4.79
466 692 4.436998 GCTCCCTCACCCACGTCG 62.437 72.222 0.00 0.00 0.00 5.12
481 707 2.269241 GCCGCCTTACCTTCAGCT 59.731 61.111 0.00 0.00 0.00 4.24
491 717 3.728279 GACGATTACCCGCCGCCTT 62.728 63.158 0.00 0.00 0.00 4.35
786 1013 1.225704 GAGCTGGACCTCCCATTGG 59.774 63.158 0.00 0.00 45.57 3.16
793 1020 0.179936 CCAATCTGGAGCTGGACCTC 59.820 60.000 0.00 0.00 40.96 3.85
796 1023 0.908198 AGACCAATCTGGAGCTGGAC 59.092 55.000 0.00 3.35 40.96 4.02
815 1042 1.382009 TATGTCCGCTGGTAGCCCA 60.382 57.895 0.00 0.00 38.18 5.36
1038 1270 0.417437 TGATGGGAGGTTCAGGGAGA 59.583 55.000 0.00 0.00 0.00 3.71
1107 1339 1.201424 TGAGCAGCATCAGGTCAGAT 58.799 50.000 0.00 0.00 38.45 2.90
1182 1414 0.515564 CGCCGTTTAGGACAGGTTTG 59.484 55.000 0.00 0.00 45.00 2.93
1203 1435 3.495453 CCTCGTACTTTTCAAGAACCCCA 60.495 47.826 0.00 0.00 0.00 4.96
1222 1454 1.891150 TCCGTGGTAGAAAGACACCTC 59.109 52.381 0.00 0.00 35.73 3.85
1258 1490 7.432148 AAGAACATCCATATGGTGTACTGTA 57.568 36.000 21.28 0.00 37.43 2.74
1260 1492 6.038603 CCAAAGAACATCCATATGGTGTACTG 59.961 42.308 21.28 16.18 37.43 2.74
1564 1796 1.497161 ATGTAGTACCTCTGGGCCAC 58.503 55.000 0.00 0.00 35.63 5.01
1568 1800 4.100189 CCTGAAGAATGTAGTACCTCTGGG 59.900 50.000 0.00 1.36 38.88 4.45
1585 1817 1.077212 CTCCCCATGGTGCCTGAAG 60.077 63.158 11.73 0.00 0.00 3.02
1627 1859 0.119155 TGTTCAGGATCCCAGTCCCT 59.881 55.000 8.55 0.00 39.17 4.20
1668 1900 2.228138 TGTACACTTCGAAAGCGGTT 57.772 45.000 0.00 0.00 38.28 4.44
1707 1939 1.812571 CCTGCCATCTTAACACGCTTT 59.187 47.619 0.00 0.00 0.00 3.51
1739 1971 2.723209 GTTTCCCAGTAAACAACGCAC 58.277 47.619 0.00 0.00 38.85 5.34
1764 1996 4.152402 TCTTTCACGCTAAAGCAAGATGTC 59.848 41.667 2.44 0.00 42.21 3.06
1785 2017 2.775960 TGACATCAAGCCTGGATGATCT 59.224 45.455 16.10 0.00 43.80 2.75
1906 2138 3.639868 TGGATGATCCAACCAACCTGGT 61.640 50.000 12.63 0.00 45.00 4.00
1907 2139 1.005805 TGGATGATCCAACCAACCTGG 59.994 52.381 12.63 0.00 45.00 4.45
1908 2140 2.512692 TGGATGATCCAACCAACCTG 57.487 50.000 12.63 0.00 45.00 4.00
1916 2148 8.950315 TTTGACATCAAGCCTGGATGATCCAA 62.950 42.308 16.10 12.46 43.80 3.53
1917 2149 1.848388 ACATCAAGCCTGGATGATCCA 59.152 47.619 16.10 14.42 45.98 3.41
1918 2150 2.158711 TGACATCAAGCCTGGATGATCC 60.159 50.000 16.10 4.05 43.80 3.36
1919 2151 3.204306 TGACATCAAGCCTGGATGATC 57.796 47.619 16.10 9.73 43.80 2.92
1920 2152 3.657398 TTGACATCAAGCCTGGATGAT 57.343 42.857 16.10 3.59 43.80 2.45
1921 2153 3.084039 GTTTGACATCAAGCCTGGATGA 58.916 45.455 16.10 0.87 43.80 2.92
1922 2154 3.498927 GTTTGACATCAAGCCTGGATG 57.501 47.619 7.57 7.57 45.93 3.51
1929 2161 3.648339 ACACATGGTTTGACATCAAGC 57.352 42.857 0.00 0.18 37.15 4.01
1930 2162 9.935682 GTATAATACACATGGTTTGACATCAAG 57.064 33.333 0.00 0.00 37.15 3.02
1931 2163 9.679661 AGTATAATACACATGGTTTGACATCAA 57.320 29.630 0.00 0.00 0.00 2.57
1932 2164 9.325198 GAGTATAATACACATGGTTTGACATCA 57.675 33.333 0.00 0.00 0.00 3.07
1933 2165 9.325198 TGAGTATAATACACATGGTTTGACATC 57.675 33.333 0.00 0.00 0.00 3.06
1934 2166 9.851686 ATGAGTATAATACACATGGTTTGACAT 57.148 29.630 0.00 0.00 34.50 3.06
1935 2167 9.108284 CATGAGTATAATACACATGGTTTGACA 57.892 33.333 11.70 0.00 34.50 3.58
1936 2168 9.325198 TCATGAGTATAATACACATGGTTTGAC 57.675 33.333 16.83 0.00 34.50 3.18
1941 2173 9.881649 GATCATCATGAGTATAATACACATGGT 57.118 33.333 16.83 10.31 34.50 3.55
1942 2174 9.880157 TGATCATCATGAGTATAATACACATGG 57.120 33.333 16.83 6.59 34.50 3.66
1959 2191 9.722184 AGTCGAATAAATCTTCATGATCATCAT 57.278 29.630 4.86 0.00 37.65 2.45
1960 2192 8.985805 CAGTCGAATAAATCTTCATGATCATCA 58.014 33.333 4.86 0.00 33.57 3.07
1961 2193 7.956403 GCAGTCGAATAAATCTTCATGATCATC 59.044 37.037 4.86 0.00 33.57 2.92
1962 2194 7.359849 CGCAGTCGAATAAATCTTCATGATCAT 60.360 37.037 1.18 1.18 38.10 2.45
1963 2195 6.074142 CGCAGTCGAATAAATCTTCATGATCA 60.074 38.462 0.00 0.00 38.10 2.92
1964 2196 6.144563 TCGCAGTCGAATAAATCTTCATGATC 59.855 38.462 0.00 0.00 42.44 2.92
1965 2197 5.985530 TCGCAGTCGAATAAATCTTCATGAT 59.014 36.000 0.00 0.00 42.44 2.45
1966 2198 5.348164 TCGCAGTCGAATAAATCTTCATGA 58.652 37.500 0.00 0.00 42.44 3.07
1967 2199 5.641777 TCGCAGTCGAATAAATCTTCATG 57.358 39.130 0.00 0.00 42.44 3.07
1980 2212 0.385751 GGGATCATCTTCGCAGTCGA 59.614 55.000 0.00 0.00 43.89 4.20
1981 2213 0.598680 GGGGATCATCTTCGCAGTCG 60.599 60.000 0.00 0.00 0.00 4.18
1982 2214 0.598680 CGGGGATCATCTTCGCAGTC 60.599 60.000 0.00 0.00 0.00 3.51
1983 2215 1.330655 ACGGGGATCATCTTCGCAGT 61.331 55.000 0.00 0.00 33.42 4.40
1984 2216 0.877649 CACGGGGATCATCTTCGCAG 60.878 60.000 0.00 0.00 0.00 5.18
1985 2217 1.143838 CACGGGGATCATCTTCGCA 59.856 57.895 0.00 0.00 0.00 5.10
1986 2218 0.876342 GTCACGGGGATCATCTTCGC 60.876 60.000 0.00 0.00 0.00 4.70
1987 2219 0.459899 TGTCACGGGGATCATCTTCG 59.540 55.000 0.00 0.00 0.00 3.79
1988 2220 2.918712 ATGTCACGGGGATCATCTTC 57.081 50.000 0.00 0.00 0.00 2.87
1989 2221 2.634940 CCTATGTCACGGGGATCATCTT 59.365 50.000 0.00 0.00 0.00 2.40
1990 2222 2.251818 CCTATGTCACGGGGATCATCT 58.748 52.381 0.00 0.00 0.00 2.90
1991 2223 1.276421 CCCTATGTCACGGGGATCATC 59.724 57.143 6.16 0.00 42.58 2.92
1992 2224 1.352083 CCCTATGTCACGGGGATCAT 58.648 55.000 6.16 0.00 42.58 2.45
1993 2225 2.834631 CCCTATGTCACGGGGATCA 58.165 57.895 6.16 0.00 42.58 2.92
1998 2230 0.462789 GTACACCCCTATGTCACGGG 59.537 60.000 2.57 2.57 43.05 5.28
1999 2231 0.101759 CGTACACCCCTATGTCACGG 59.898 60.000 0.00 0.00 33.85 4.94
2000 2232 1.097232 TCGTACACCCCTATGTCACG 58.903 55.000 0.00 0.00 34.12 4.35
2001 2233 2.097825 AGTCGTACACCCCTATGTCAC 58.902 52.381 0.00 0.00 33.85 3.67
2002 2234 2.494471 CAAGTCGTACACCCCTATGTCA 59.506 50.000 0.00 0.00 33.85 3.58
2003 2235 2.159142 CCAAGTCGTACACCCCTATGTC 60.159 54.545 0.00 0.00 33.85 3.06
2004 2236 1.829222 CCAAGTCGTACACCCCTATGT 59.171 52.381 0.00 0.00 36.56 2.29
2005 2237 2.100916 CTCCAAGTCGTACACCCCTATG 59.899 54.545 0.00 0.00 0.00 2.23
2006 2238 2.024655 TCTCCAAGTCGTACACCCCTAT 60.025 50.000 0.00 0.00 0.00 2.57
2007 2239 1.355381 TCTCCAAGTCGTACACCCCTA 59.645 52.381 0.00 0.00 0.00 3.53
2008 2240 0.113776 TCTCCAAGTCGTACACCCCT 59.886 55.000 0.00 0.00 0.00 4.79
2009 2241 0.971386 TTCTCCAAGTCGTACACCCC 59.029 55.000 0.00 0.00 0.00 4.95
2010 2242 1.342174 TGTTCTCCAAGTCGTACACCC 59.658 52.381 0.00 0.00 0.00 4.61
2011 2243 2.806608 TGTTCTCCAAGTCGTACACC 57.193 50.000 0.00 0.00 0.00 4.16
2012 2244 4.326548 GCTATTGTTCTCCAAGTCGTACAC 59.673 45.833 0.00 0.00 36.25 2.90
2013 2245 4.021807 TGCTATTGTTCTCCAAGTCGTACA 60.022 41.667 0.00 0.00 36.25 2.90
2014 2246 4.491676 TGCTATTGTTCTCCAAGTCGTAC 58.508 43.478 0.00 0.00 36.25 3.67
2015 2247 4.381612 CCTGCTATTGTTCTCCAAGTCGTA 60.382 45.833 0.00 0.00 36.25 3.43
2016 2248 3.589988 CTGCTATTGTTCTCCAAGTCGT 58.410 45.455 0.00 0.00 36.25 4.34
2017 2249 2.932614 CCTGCTATTGTTCTCCAAGTCG 59.067 50.000 0.00 0.00 36.25 4.18
2018 2250 3.935828 GTCCTGCTATTGTTCTCCAAGTC 59.064 47.826 0.00 0.00 36.25 3.01
2019 2251 3.307762 GGTCCTGCTATTGTTCTCCAAGT 60.308 47.826 0.00 0.00 36.25 3.16
2020 2252 3.274288 GGTCCTGCTATTGTTCTCCAAG 58.726 50.000 0.00 0.00 36.25 3.61
2021 2253 2.642311 TGGTCCTGCTATTGTTCTCCAA 59.358 45.455 0.00 0.00 37.49 3.53
2022 2254 2.237143 CTGGTCCTGCTATTGTTCTCCA 59.763 50.000 0.00 0.00 0.00 3.86
2023 2255 2.420687 CCTGGTCCTGCTATTGTTCTCC 60.421 54.545 0.00 0.00 0.00 3.71
2024 2256 2.237392 ACCTGGTCCTGCTATTGTTCTC 59.763 50.000 0.00 0.00 0.00 2.87
2025 2257 2.269940 ACCTGGTCCTGCTATTGTTCT 58.730 47.619 0.00 0.00 0.00 3.01
2026 2258 2.749621 CAACCTGGTCCTGCTATTGTTC 59.250 50.000 0.00 0.00 0.00 3.18
2027 2259 2.555227 CCAACCTGGTCCTGCTATTGTT 60.555 50.000 0.00 0.00 31.35 2.83
2028 2260 1.004745 CCAACCTGGTCCTGCTATTGT 59.995 52.381 0.00 0.00 31.35 2.71
2029 2261 1.755179 CCAACCTGGTCCTGCTATTG 58.245 55.000 0.00 0.00 31.35 1.90
2043 2275 1.075536 AGGGTTCAGGATCAACCAACC 59.924 52.381 13.73 10.06 44.65 3.77
2142 2374 6.748198 GCAAGTAGTAACATCTGAGACAGTAC 59.252 42.308 0.00 0.00 32.61 2.73
2148 2380 5.984695 ACAGCAAGTAGTAACATCTGAGA 57.015 39.130 0.00 0.00 0.00 3.27
2158 2390 9.389755 TGCAAATGAAATATACAGCAAGTAGTA 57.610 29.630 0.00 0.00 35.85 1.82
2159 2391 8.279970 TGCAAATGAAATATACAGCAAGTAGT 57.720 30.769 0.00 0.00 35.85 2.73
2165 2397 6.753279 GCTTCTTGCAAATGAAATATACAGCA 59.247 34.615 0.00 0.00 42.31 4.41
2232 2464 8.768955 AGAAGCGCATTTATCTTATTCTGTAAG 58.231 33.333 11.47 0.00 0.00 2.34
2233 2465 8.662781 AGAAGCGCATTTATCTTATTCTGTAA 57.337 30.769 11.47 0.00 0.00 2.41
2234 2466 8.662781 AAGAAGCGCATTTATCTTATTCTGTA 57.337 30.769 11.47 0.00 30.69 2.74
2235 2467 7.497249 AGAAGAAGCGCATTTATCTTATTCTGT 59.503 33.333 11.47 0.00 42.92 3.41
2236 2468 7.859598 AGAAGAAGCGCATTTATCTTATTCTG 58.140 34.615 11.47 0.00 42.92 3.02
2237 2469 7.712639 TGAGAAGAAGCGCATTTATCTTATTCT 59.287 33.333 11.47 11.46 45.43 2.40
2238 2470 7.855545 TGAGAAGAAGCGCATTTATCTTATTC 58.144 34.615 11.47 6.36 37.95 1.75
2239 2471 7.792374 TGAGAAGAAGCGCATTTATCTTATT 57.208 32.000 11.47 0.00 32.54 1.40
2240 2472 7.976135 ATGAGAAGAAGCGCATTTATCTTAT 57.024 32.000 11.47 8.37 32.54 1.73
2241 2473 7.792374 AATGAGAAGAAGCGCATTTATCTTA 57.208 32.000 11.47 3.66 35.23 2.10
2242 2474 6.690194 AATGAGAAGAAGCGCATTTATCTT 57.310 33.333 11.47 10.97 35.23 2.40
2243 2475 6.317140 TGAAATGAGAAGAAGCGCATTTATCT 59.683 34.615 11.47 6.29 44.51 1.98
2244 2476 6.489675 TGAAATGAGAAGAAGCGCATTTATC 58.510 36.000 11.47 8.16 44.51 1.75
2245 2477 6.441093 TGAAATGAGAAGAAGCGCATTTAT 57.559 33.333 11.47 0.00 44.51 1.40
2246 2478 5.878332 TGAAATGAGAAGAAGCGCATTTA 57.122 34.783 11.47 0.00 44.51 1.40
2247 2479 4.771590 TGAAATGAGAAGAAGCGCATTT 57.228 36.364 11.47 3.70 46.23 2.32
2248 2480 4.978083 ATGAAATGAGAAGAAGCGCATT 57.022 36.364 11.47 0.06 39.46 3.56
2249 2481 4.639310 AGAATGAAATGAGAAGAAGCGCAT 59.361 37.500 11.47 0.00 0.00 4.73
2250 2482 4.005650 AGAATGAAATGAGAAGAAGCGCA 58.994 39.130 11.47 0.00 0.00 6.09
2251 2483 4.612932 AGAATGAAATGAGAAGAAGCGC 57.387 40.909 0.00 0.00 0.00 5.92
2252 2484 8.233190 ACTAAAAGAATGAAATGAGAAGAAGCG 58.767 33.333 0.00 0.00 0.00 4.68
2253 2485 9.339492 CACTAAAAGAATGAAATGAGAAGAAGC 57.661 33.333 0.00 0.00 0.00 3.86
2270 2502 9.965824 GGATTCAGATTTCAAAACACTAAAAGA 57.034 29.630 0.00 0.00 0.00 2.52
2271 2503 9.196552 GGGATTCAGATTTCAAAACACTAAAAG 57.803 33.333 0.00 0.00 0.00 2.27
2272 2504 8.700051 TGGGATTCAGATTTCAAAACACTAAAA 58.300 29.630 0.00 0.00 0.00 1.52
2273 2505 8.141268 GTGGGATTCAGATTTCAAAACACTAAA 58.859 33.333 0.00 0.00 0.00 1.85
2274 2506 7.505585 AGTGGGATTCAGATTTCAAAACACTAA 59.494 33.333 0.00 0.00 33.10 2.24
2275 2507 7.004086 AGTGGGATTCAGATTTCAAAACACTA 58.996 34.615 0.00 0.00 33.10 2.74
2276 2508 5.835280 AGTGGGATTCAGATTTCAAAACACT 59.165 36.000 0.00 0.00 0.00 3.55
2277 2509 6.089249 AGTGGGATTCAGATTTCAAAACAC 57.911 37.500 0.00 0.00 0.00 3.32
2278 2510 5.832595 TGAGTGGGATTCAGATTTCAAAACA 59.167 36.000 0.00 0.00 0.00 2.83
2279 2511 6.152379 GTGAGTGGGATTCAGATTTCAAAAC 58.848 40.000 0.00 0.00 0.00 2.43
2280 2512 5.832595 TGTGAGTGGGATTCAGATTTCAAAA 59.167 36.000 0.00 0.00 0.00 2.44
2281 2513 5.384336 TGTGAGTGGGATTCAGATTTCAAA 58.616 37.500 0.00 0.00 0.00 2.69
2282 2514 4.984295 TGTGAGTGGGATTCAGATTTCAA 58.016 39.130 0.00 0.00 0.00 2.69
2283 2515 4.286808 TCTGTGAGTGGGATTCAGATTTCA 59.713 41.667 0.00 0.00 31.51 2.69
2284 2516 4.836825 TCTGTGAGTGGGATTCAGATTTC 58.163 43.478 0.00 0.00 31.51 2.17
2285 2517 4.916041 TCTGTGAGTGGGATTCAGATTT 57.084 40.909 0.00 0.00 31.51 2.17
2286 2518 4.916041 TTCTGTGAGTGGGATTCAGATT 57.084 40.909 0.00 0.00 35.54 2.40
2287 2519 6.385176 TCTTATTCTGTGAGTGGGATTCAGAT 59.615 38.462 0.00 0.00 35.54 2.90
2288 2520 5.721480 TCTTATTCTGTGAGTGGGATTCAGA 59.279 40.000 0.00 0.00 34.08 3.27
2289 2521 5.982356 TCTTATTCTGTGAGTGGGATTCAG 58.018 41.667 0.00 0.00 0.00 3.02
2290 2522 6.566079 ATCTTATTCTGTGAGTGGGATTCA 57.434 37.500 0.00 0.00 0.00 2.57
2291 2523 8.964476 TTTATCTTATTCTGTGAGTGGGATTC 57.036 34.615 0.00 0.00 0.00 2.52
2292 2524 9.347240 CATTTATCTTATTCTGTGAGTGGGATT 57.653 33.333 0.00 0.00 0.00 3.01
2293 2525 7.446625 GCATTTATCTTATTCTGTGAGTGGGAT 59.553 37.037 0.00 0.00 0.00 3.85
2294 2526 6.767902 GCATTTATCTTATTCTGTGAGTGGGA 59.232 38.462 0.00 0.00 0.00 4.37
2295 2527 6.293081 CGCATTTATCTTATTCTGTGAGTGGG 60.293 42.308 0.00 0.00 0.00 4.61
2296 2528 6.653183 CGCATTTATCTTATTCTGTGAGTGG 58.347 40.000 0.00 0.00 0.00 4.00
2297 2529 6.018425 AGCGCATTTATCTTATTCTGTGAGTG 60.018 38.462 11.47 0.00 0.00 3.51
2298 2530 6.051717 AGCGCATTTATCTTATTCTGTGAGT 58.948 36.000 11.47 0.00 0.00 3.41
2333 2565 3.081061 ACACACAACTCAGACAAAGCAA 58.919 40.909 0.00 0.00 0.00 3.91
2346 2578 6.060028 TGAAGCTATTTCTGAACACACAAC 57.940 37.500 0.00 0.00 36.71 3.32
2368 2600 5.409520 TGAAGAGCAGTTAATTAGCACACTG 59.590 40.000 9.68 9.68 39.79 3.66
2383 2629 2.541288 CTGCCAGTGTGAAGAGCAG 58.459 57.895 2.97 2.97 44.31 4.24
2415 2661 1.735360 CTATTGCGCCCCACCATTG 59.265 57.895 4.18 0.00 0.00 2.82
2449 2695 1.173043 CAGGAAGCAATTGGCCGTTA 58.827 50.000 7.72 0.00 46.50 3.18
2475 2721 1.205064 CAAAGAGTGCCGCAAGACG 59.795 57.895 0.00 0.00 43.15 4.18
2498 2744 0.689623 CATCTCCCTCCATAGTGGGC 59.310 60.000 0.00 0.00 45.11 5.36
2499 2745 2.105477 CAACATCTCCCTCCATAGTGGG 59.895 54.545 0.00 0.00 46.60 4.61
2501 2747 2.486191 GGCAACATCTCCCTCCATAGTG 60.486 54.545 0.00 0.00 0.00 2.74
2502 2748 1.771255 GGCAACATCTCCCTCCATAGT 59.229 52.381 0.00 0.00 0.00 2.12
2503 2749 1.770658 TGGCAACATCTCCCTCCATAG 59.229 52.381 0.00 0.00 46.17 2.23
2504 2750 1.891933 TGGCAACATCTCCCTCCATA 58.108 50.000 0.00 0.00 46.17 2.74
2629 2880 1.135083 TCGCCACCGCAAAAAGAAAAA 60.135 42.857 0.00 0.00 34.03 1.94
2630 2881 0.456221 TCGCCACCGCAAAAAGAAAA 59.544 45.000 0.00 0.00 34.03 2.29
2631 2882 0.456221 TTCGCCACCGCAAAAAGAAA 59.544 45.000 0.00 0.00 34.03 2.52
2632 2883 0.030101 CTTCGCCACCGCAAAAAGAA 59.970 50.000 0.00 0.00 34.03 2.52
2633 2884 1.098712 ACTTCGCCACCGCAAAAAGA 61.099 50.000 0.00 0.00 34.03 2.52
2634 2885 0.248866 AACTTCGCCACCGCAAAAAG 60.249 50.000 0.00 0.00 34.03 2.27
2635 2886 0.173708 AAACTTCGCCACCGCAAAAA 59.826 45.000 0.00 0.00 34.03 1.94
2636 2887 0.248702 GAAACTTCGCCACCGCAAAA 60.249 50.000 0.00 0.00 34.03 2.44
2637 2888 1.357334 GAAACTTCGCCACCGCAAA 59.643 52.632 0.00 0.00 34.03 3.68
2638 2889 2.887889 CGAAACTTCGCCACCGCAA 61.888 57.895 0.00 0.00 44.26 4.85
2639 2890 3.342627 CGAAACTTCGCCACCGCA 61.343 61.111 0.00 0.00 44.26 5.69
2658 2909 2.023673 CACTCACAGCCCAGTTGAAAA 58.976 47.619 0.00 0.00 0.00 2.29
2665 2916 3.223661 GAGTTCACTCACAGCCCAG 57.776 57.895 1.86 0.00 42.42 4.45
2723 2974 5.766222 CTTCTGTCAATTTCAAAGACCCTG 58.234 41.667 0.00 0.00 0.00 4.45
2754 3005 1.909986 AGTAACAGGAAGAGAAGGGGC 59.090 52.381 0.00 0.00 0.00 5.80
2777 3035 8.836413 TGTCATGTTTTTAGTTCAAAGGAGTAG 58.164 33.333 0.00 0.00 0.00 2.57
2875 3188 9.883142 AAAAATCTACAATTGGAAAGTTGTGAA 57.117 25.926 10.83 0.00 38.84 3.18
3027 3342 4.696877 TCATACGGTATATAGTGGTCACGG 59.303 45.833 0.00 0.00 36.20 4.94
3041 3356 4.552355 CGTTAGGCATTCATCATACGGTA 58.448 43.478 0.00 0.00 0.00 4.02
3042 3357 3.390135 CGTTAGGCATTCATCATACGGT 58.610 45.455 0.00 0.00 0.00 4.83
3066 3381 1.303309 GACCAAATCGAGGCTGATGG 58.697 55.000 0.00 0.00 0.00 3.51
3078 3393 2.825532 GCCATACCAACAGTGACCAAAT 59.174 45.455 0.00 0.00 0.00 2.32
3116 3431 8.605065 ACCAAATGGATGGAAGACATAAATTTT 58.395 29.630 6.42 0.00 43.54 1.82
3121 3436 4.402155 GCACCAAATGGATGGAAGACATAA 59.598 41.667 6.42 0.00 43.54 1.90
3161 3476 4.079253 AGCGTGACAAGGATACCAAAATT 58.921 39.130 0.00 0.00 37.17 1.82
3166 3481 0.973632 ACAGCGTGACAAGGATACCA 59.026 50.000 0.00 0.00 37.17 3.25
3168 3483 2.656560 AGACAGCGTGACAAGGATAC 57.343 50.000 0.00 0.00 0.00 2.24
3169 3484 3.617284 TCTAGACAGCGTGACAAGGATA 58.383 45.455 0.00 0.00 0.00 2.59
3170 3485 2.447443 TCTAGACAGCGTGACAAGGAT 58.553 47.619 0.00 0.00 0.00 3.24
3173 3488 2.094494 ACCATCTAGACAGCGTGACAAG 60.094 50.000 0.00 0.00 0.00 3.16
3175 3490 1.545841 ACCATCTAGACAGCGTGACA 58.454 50.000 0.00 0.00 0.00 3.58
3176 3491 2.033550 CCTACCATCTAGACAGCGTGAC 59.966 54.545 0.00 0.00 0.00 3.67
3178 3493 1.338337 CCCTACCATCTAGACAGCGTG 59.662 57.143 0.00 0.00 0.00 5.34
3180 3495 0.962489 CCCCTACCATCTAGACAGCG 59.038 60.000 0.00 0.00 0.00 5.18
3181 3496 2.383442 TCCCCTACCATCTAGACAGC 57.617 55.000 0.00 0.00 0.00 4.40
3182 3497 4.290942 AGTTTCCCCTACCATCTAGACAG 58.709 47.826 0.00 0.00 0.00 3.51
3183 3498 4.348020 AGTTTCCCCTACCATCTAGACA 57.652 45.455 0.00 0.00 0.00 3.41
3184 3499 4.281435 GCTAGTTTCCCCTACCATCTAGAC 59.719 50.000 0.00 0.00 0.00 2.59
3185 3500 4.170251 AGCTAGTTTCCCCTACCATCTAGA 59.830 45.833 0.00 0.00 0.00 2.43
3187 3502 4.078805 TGAGCTAGTTTCCCCTACCATCTA 60.079 45.833 0.00 0.00 0.00 1.98
3189 3504 3.039011 TGAGCTAGTTTCCCCTACCATC 58.961 50.000 0.00 0.00 0.00 3.51
3190 3505 3.130734 TGAGCTAGTTTCCCCTACCAT 57.869 47.619 0.00 0.00 0.00 3.55
3191 3506 2.634639 TGAGCTAGTTTCCCCTACCA 57.365 50.000 0.00 0.00 0.00 3.25
3192 3507 4.452825 GAAATGAGCTAGTTTCCCCTACC 58.547 47.826 10.67 0.00 0.00 3.18
3193 3508 4.120589 CGAAATGAGCTAGTTTCCCCTAC 58.879 47.826 14.35 0.00 32.14 3.18
3194 3509 3.773119 ACGAAATGAGCTAGTTTCCCCTA 59.227 43.478 14.35 0.00 32.14 3.53
3195 3510 2.572104 ACGAAATGAGCTAGTTTCCCCT 59.428 45.455 14.35 0.03 32.14 4.79
3198 3513 3.125316 CACCACGAAATGAGCTAGTTTCC 59.875 47.826 14.35 2.21 32.14 3.13
3199 3514 3.746492 ACACCACGAAATGAGCTAGTTTC 59.254 43.478 11.43 11.43 0.00 2.78
3200 3515 3.498397 CACACCACGAAATGAGCTAGTTT 59.502 43.478 0.00 0.00 0.00 2.66
3201 3516 3.067106 CACACCACGAAATGAGCTAGTT 58.933 45.455 0.00 0.00 0.00 2.24
3202 3517 2.037251 ACACACCACGAAATGAGCTAGT 59.963 45.455 0.00 0.00 0.00 2.57
3203 3518 2.668457 GACACACCACGAAATGAGCTAG 59.332 50.000 0.00 0.00 0.00 3.42
3204 3519 2.036604 TGACACACCACGAAATGAGCTA 59.963 45.455 0.00 0.00 0.00 3.32
3205 3520 1.202639 TGACACACCACGAAATGAGCT 60.203 47.619 0.00 0.00 0.00 4.09
3206 3521 1.225855 TGACACACCACGAAATGAGC 58.774 50.000 0.00 0.00 0.00 4.26
3207 3522 3.961477 TTTGACACACCACGAAATGAG 57.039 42.857 0.00 0.00 0.00 2.90
3281 3623 1.002033 CCAACTGCAGTTCAGACTTGC 60.002 52.381 28.97 0.00 45.72 4.01
3299 3641 5.821516 AACAAATTTGTCTGAACGTACCA 57.178 34.783 23.47 0.00 41.31 3.25
3313 3655 9.985730 ATGTGTGATTCTGTATGAAACAAATTT 57.014 25.926 0.00 0.00 38.80 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.