Multiple sequence alignment - TraesCS7A01G430600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G430600 chr7A 100.000 3513 0 0 465 3977 624967612 624964100 0.000000e+00 6488.0
1 TraesCS7A01G430600 chr7A 97.534 365 8 1 3614 3977 288018919 288018555 1.210000e-174 623.0
2 TraesCS7A01G430600 chr7A 96.861 223 5 2 3757 3977 58002406 58002184 4.850000e-99 372.0
3 TraesCS7A01G430600 chr7A 100.000 189 0 0 1 189 624968076 624967888 2.270000e-92 350.0
4 TraesCS7A01G430600 chr7A 98.795 83 0 1 107 189 674007198 674007279 3.200000e-31 147.0
5 TraesCS7A01G430600 chr7A 89.583 48 5 0 465 512 427837845 427837798 1.190000e-05 62.1
6 TraesCS7A01G430600 chr7A 89.583 48 5 0 465 512 427839520 427839473 1.190000e-05 62.1
7 TraesCS7A01G430600 chr7A 92.857 42 3 0 75 116 624967974 624967933 1.190000e-05 62.1
8 TraesCS7A01G430600 chr7A 90.244 41 4 0 76 116 27963044 27963084 2.000000e-03 54.7
9 TraesCS7A01G430600 chr7B 91.327 2940 161 36 611 3484 586266164 586263253 0.000000e+00 3930.0
10 TraesCS7A01G430600 chr7B 92.676 2321 126 26 622 2930 586659296 586661584 0.000000e+00 3304.0
11 TraesCS7A01G430600 chr7B 92.899 507 35 1 2427 2932 586668643 586669149 0.000000e+00 736.0
12 TraesCS7A01G430600 chr7D 91.392 2521 143 46 607 3100 543601901 543604374 0.000000e+00 3386.0
13 TraesCS7A01G430600 chr7D 92.224 2302 130 28 611 2901 543059960 543057697 0.000000e+00 3214.0
14 TraesCS7A01G430600 chr7D 88.426 216 16 4 3396 3611 543008383 543008177 6.600000e-63 252.0
15 TraesCS7A01G430600 chr5D 90.013 2233 188 28 768 2986 400297457 400295246 0.000000e+00 2856.0
16 TraesCS7A01G430600 chr5D 92.093 215 5 3 3757 3959 429725710 429725496 3.890000e-75 292.0
17 TraesCS7A01G430600 chr5A 89.576 2264 190 29 768 3008 505628246 505626006 0.000000e+00 2832.0
18 TraesCS7A01G430600 chr5A 100.000 83 0 0 107 189 52277717 52277799 1.910000e-33 154.0
19 TraesCS7A01G430600 chr5A 98.810 84 1 0 106 189 401958433 401958516 2.480000e-32 150.0
20 TraesCS7A01G430600 chr5A 81.102 127 19 5 3615 3736 357802835 357802709 3.270000e-16 97.1
21 TraesCS7A01G430600 chr5A 100.000 37 0 0 465 501 55054119 55054083 7.130000e-08 69.4
22 TraesCS7A01G430600 chr5A 92.105 38 3 0 79 116 52277717 52277754 2.000000e-03 54.7
23 TraesCS7A01G430600 chr5A 100.000 28 0 0 78 105 401958433 401958460 7.000000e-03 52.8
24 TraesCS7A01G430600 chr5A 100.000 27 0 0 79 105 556894167 556894141 2.600000e-02 51.0
25 TraesCS7A01G430600 chr5B 91.942 1998 150 9 1001 2997 480303653 480301666 0.000000e+00 2787.0
26 TraesCS7A01G430600 chr2D 82.978 1827 283 19 1077 2892 651417405 651419214 0.000000e+00 1626.0
27 TraesCS7A01G430600 chr6A 97.832 369 7 1 3610 3977 4304521 4304889 1.560000e-178 636.0
28 TraesCS7A01G430600 chr6A 95.045 222 4 3 3757 3977 57290548 57290763 3.810000e-90 342.0
29 TraesCS7A01G430600 chr6A 98.795 83 1 0 107 189 3805989 3806071 8.900000e-32 148.0
30 TraesCS7A01G430600 chr6A 98.765 81 1 0 109 189 92058335 92058415 1.150000e-30 145.0
31 TraesCS7A01G430600 chr6A 100.000 37 0 0 465 501 74387517 74387553 7.130000e-08 69.4
32 TraesCS7A01G430600 chr6A 100.000 37 0 0 465 501 563525625 563525661 7.130000e-08 69.4
33 TraesCS7A01G430600 chr6A 100.000 36 0 0 465 500 78093712 78093747 2.560000e-07 67.6
34 TraesCS7A01G430600 chr6A 100.000 28 0 0 79 106 593672400 593672373 7.000000e-03 52.8
35 TraesCS7A01G430600 chr3A 98.087 366 5 2 3614 3977 16211270 16211635 1.560000e-178 636.0
36 TraesCS7A01G430600 chr3A 94.624 93 2 3 98 189 661964097 661964187 1.490000e-29 141.0
37 TraesCS7A01G430600 chr2B 76.404 1140 233 27 1098 2210 93706931 93705801 2.060000e-162 582.0
38 TraesCS7A01G430600 chr2A 76.181 1016 217 22 1241 2239 59988793 59987786 2.740000e-141 512.0
39 TraesCS7A01G430600 chr2A 98.795 83 0 1 107 189 21553945 21553864 3.200000e-31 147.0
40 TraesCS7A01G430600 chr2A 98.795 83 0 1 107 189 449290007 449289926 3.200000e-31 147.0
41 TraesCS7A01G430600 chr2A 100.000 39 0 0 465 503 21553835 21553797 5.510000e-09 73.1
42 TraesCS7A01G430600 chrUn 95.082 244 11 1 3610 3852 460786745 460786988 2.240000e-102 383.0
43 TraesCS7A01G430600 chrUn 97.260 73 2 0 3689 3761 358911819 358911747 1.500000e-24 124.0
44 TraesCS7A01G430600 chr6B 92.453 212 5 2 3757 3957 289520642 289520853 3.890000e-75 292.0
45 TraesCS7A01G430600 chr6B 97.260 73 2 0 3689 3761 289517873 289517945 1.500000e-24 124.0
46 TraesCS7A01G430600 chr6B 100.000 36 0 0 465 500 14302310 14302345 2.560000e-07 67.6
47 TraesCS7A01G430600 chr4D 92.453 212 5 2 3757 3957 19451166 19450955 3.890000e-75 292.0
48 TraesCS7A01G430600 chr1D 92.453 212 5 2 3757 3957 491751949 491751738 3.890000e-75 292.0
49 TraesCS7A01G430600 chr1D 95.890 73 2 1 3689 3761 491754711 491754640 2.510000e-22 117.0
50 TraesCS7A01G430600 chr4A 96.512 86 3 0 104 189 579614678 579614763 4.140000e-30 143.0
51 TraesCS7A01G430600 chr3B 97.260 73 2 0 3689 3761 29152506 29152578 1.500000e-24 124.0
52 TraesCS7A01G430600 chr1A 100.000 36 0 0 465 500 38659161 38659196 2.560000e-07 67.6
53 TraesCS7A01G430600 chr1A 92.683 41 2 1 576 616 119934930 119934891 1.540000e-04 58.4
54 TraesCS7A01G430600 chr1A 92.308 39 2 1 79 116 562807823 562807861 2.000000e-03 54.7
55 TraesCS7A01G430600 chr1B 100.000 28 0 0 79 106 655855699 655855726 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G430600 chr7A 624964100 624968076 3976 True 2300.033333 6488 97.6190 1 3977 3 chr7A.!!$R4 3976
1 TraesCS7A01G430600 chr7B 586263253 586266164 2911 True 3930.000000 3930 91.3270 611 3484 1 chr7B.!!$R1 2873
2 TraesCS7A01G430600 chr7B 586659296 586661584 2288 False 3304.000000 3304 92.6760 622 2930 1 chr7B.!!$F1 2308
3 TraesCS7A01G430600 chr7B 586668643 586669149 506 False 736.000000 736 92.8990 2427 2932 1 chr7B.!!$F2 505
4 TraesCS7A01G430600 chr7D 543601901 543604374 2473 False 3386.000000 3386 91.3920 607 3100 1 chr7D.!!$F1 2493
5 TraesCS7A01G430600 chr7D 543057697 543059960 2263 True 3214.000000 3214 92.2240 611 2901 1 chr7D.!!$R2 2290
6 TraesCS7A01G430600 chr5D 400295246 400297457 2211 True 2856.000000 2856 90.0130 768 2986 1 chr5D.!!$R1 2218
7 TraesCS7A01G430600 chr5A 505626006 505628246 2240 True 2832.000000 2832 89.5760 768 3008 1 chr5A.!!$R3 2240
8 TraesCS7A01G430600 chr5B 480301666 480303653 1987 True 2787.000000 2787 91.9420 1001 2997 1 chr5B.!!$R1 1996
9 TraesCS7A01G430600 chr2D 651417405 651419214 1809 False 1626.000000 1626 82.9780 1077 2892 1 chr2D.!!$F1 1815
10 TraesCS7A01G430600 chr2B 93705801 93706931 1130 True 582.000000 582 76.4040 1098 2210 1 chr2B.!!$R1 1112
11 TraesCS7A01G430600 chr2A 59987786 59988793 1007 True 512.000000 512 76.1810 1241 2239 1 chr2A.!!$R1 998
12 TraesCS7A01G430600 chr6B 289517873 289520853 2980 False 208.000000 292 94.8565 3689 3957 2 chr6B.!!$F2 268
13 TraesCS7A01G430600 chr1D 491751738 491754711 2973 True 204.500000 292 94.1715 3689 3957 2 chr1D.!!$R1 268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 916 0.032267 CGCCTCCGATTCCTCCTTAC 59.968 60.0 0.00 0.00 36.29 2.34 F
932 992 0.106619 ATACGACGGCCTCCTCTTCT 60.107 55.0 0.00 0.00 0.00 2.85 F
978 1052 0.510359 GATCAATCGACATGGCTCGC 59.490 55.0 0.00 0.00 33.47 5.03 F
2745 2859 0.742505 TCAAGAACACCGTCGACAGT 59.257 50.0 17.16 7.63 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2420 0.178767 TCGGGATCAGCTTGGTCATG 59.821 55.0 0.00 0.0 0.00 3.07 R
2313 2426 0.250234 TGTTCCTCGGGATCAGCTTG 59.750 55.0 0.00 0.0 29.32 4.01 R
2967 3081 0.666274 TTGCACGTGCCTAGAGTTCG 60.666 55.0 35.72 0.0 41.18 3.95 R
3638 3782 0.249911 GTGAGACTTCGCCACACCTT 60.250 55.0 0.00 0.0 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.882610 TTCTTTCATGACTAATGCACAGTT 57.117 33.333 0.00 0.00 36.11 3.16
25 26 6.245115 TCTTTCATGACTAATGCACAGTTG 57.755 37.500 0.00 0.99 36.11 3.16
26 27 5.997129 TCTTTCATGACTAATGCACAGTTGA 59.003 36.000 0.00 3.13 36.11 3.18
27 28 6.486320 TCTTTCATGACTAATGCACAGTTGAA 59.514 34.615 10.97 10.97 36.11 2.69
28 29 6.822667 TTCATGACTAATGCACAGTTGAAT 57.177 33.333 10.97 2.66 36.11 2.57
29 30 6.822667 TCATGACTAATGCACAGTTGAATT 57.177 33.333 4.40 0.00 34.98 2.17
30 31 7.920160 TCATGACTAATGCACAGTTGAATTA 57.080 32.000 4.40 0.00 32.64 1.40
31 32 8.334263 TCATGACTAATGCACAGTTGAATTAA 57.666 30.769 4.40 0.00 33.45 1.40
32 33 8.959548 TCATGACTAATGCACAGTTGAATTAAT 58.040 29.630 4.40 0.00 33.45 1.40
33 34 9.016623 CATGACTAATGCACAGTTGAATTAATG 57.983 33.333 4.40 0.00 33.45 1.90
34 35 8.334263 TGACTAATGCACAGTTGAATTAATGA 57.666 30.769 4.40 0.00 33.45 2.57
35 36 8.959548 TGACTAATGCACAGTTGAATTAATGAT 58.040 29.630 4.40 0.00 33.45 2.45
36 37 9.793252 GACTAATGCACAGTTGAATTAATGATT 57.207 29.630 4.40 0.00 33.45 2.57
40 41 9.715121 AATGCACAGTTGAATTAATGATTTTCT 57.285 25.926 0.00 0.00 27.83 2.52
41 42 9.715121 ATGCACAGTTGAATTAATGATTTTCTT 57.285 25.926 0.00 0.00 0.00 2.52
42 43 9.195411 TGCACAGTTGAATTAATGATTTTCTTC 57.805 29.630 0.00 0.00 0.00 2.87
43 44 9.195411 GCACAGTTGAATTAATGATTTTCTTCA 57.805 29.630 0.00 0.00 0.00 3.02
55 56 5.134202 GATTTTCTTCAAAATCCCGGTGT 57.866 39.130 0.00 0.00 46.83 4.16
56 57 6.262193 GATTTTCTTCAAAATCCCGGTGTA 57.738 37.500 0.00 0.00 46.83 2.90
57 58 5.441709 TTTTCTTCAAAATCCCGGTGTAC 57.558 39.130 0.00 0.00 0.00 2.90
58 59 3.773418 TCTTCAAAATCCCGGTGTACA 57.227 42.857 0.00 0.00 0.00 2.90
59 60 3.404899 TCTTCAAAATCCCGGTGTACAC 58.595 45.455 18.01 18.01 0.00 2.90
60 61 9.346201 ATTTTCTTCAAAATCCCGGTGTACACC 62.346 40.741 31.61 31.61 41.50 4.16
72 73 1.657094 GTGTACACCTATTTGTCGCCG 59.343 52.381 15.42 0.00 0.00 6.46
73 74 1.273048 TGTACACCTATTTGTCGCCGT 59.727 47.619 0.00 0.00 0.00 5.68
74 75 2.288948 TGTACACCTATTTGTCGCCGTT 60.289 45.455 0.00 0.00 0.00 4.44
75 76 2.747396 ACACCTATTTGTCGCCGTTA 57.253 45.000 0.00 0.00 0.00 3.18
76 77 2.613691 ACACCTATTTGTCGCCGTTAG 58.386 47.619 0.00 0.00 0.00 2.34
77 78 2.231964 ACACCTATTTGTCGCCGTTAGA 59.768 45.455 0.00 0.00 0.00 2.10
78 79 3.255725 CACCTATTTGTCGCCGTTAGAA 58.744 45.455 0.00 0.00 0.00 2.10
79 80 3.306166 CACCTATTTGTCGCCGTTAGAAG 59.694 47.826 0.00 0.00 0.00 2.85
80 81 3.056322 ACCTATTTGTCGCCGTTAGAAGT 60.056 43.478 0.00 0.00 0.00 3.01
81 82 3.306166 CCTATTTGTCGCCGTTAGAAGTG 59.694 47.826 0.00 0.00 0.00 3.16
82 83 1.504359 TTTGTCGCCGTTAGAAGTGG 58.496 50.000 0.00 0.00 0.00 4.00
83 84 0.947180 TTGTCGCCGTTAGAAGTGGC 60.947 55.000 0.00 0.00 45.39 5.01
86 87 2.263540 GCCGTTAGAAGTGGCGGA 59.736 61.111 5.99 0.00 46.33 5.54
87 88 1.810030 GCCGTTAGAAGTGGCGGAG 60.810 63.158 5.99 0.00 46.33 4.63
100 101 3.211288 CGGAGCCAGGATTCGAGT 58.789 61.111 0.00 0.00 0.00 4.18
101 102 2.415825 CGGAGCCAGGATTCGAGTA 58.584 57.895 0.00 0.00 0.00 2.59
102 103 0.962489 CGGAGCCAGGATTCGAGTAT 59.038 55.000 0.00 0.00 0.00 2.12
103 104 2.160205 CGGAGCCAGGATTCGAGTATA 58.840 52.381 0.00 0.00 0.00 1.47
104 105 2.162608 CGGAGCCAGGATTCGAGTATAG 59.837 54.545 0.00 0.00 0.00 1.31
105 106 3.422796 GGAGCCAGGATTCGAGTATAGA 58.577 50.000 0.00 0.00 0.00 1.98
106 107 3.827302 GGAGCCAGGATTCGAGTATAGAA 59.173 47.826 0.00 0.00 33.27 2.10
107 108 4.082463 GGAGCCAGGATTCGAGTATAGAAG 60.082 50.000 0.00 0.00 31.94 2.85
108 109 4.475345 AGCCAGGATTCGAGTATAGAAGT 58.525 43.478 0.00 0.00 31.94 3.01
109 110 4.279671 AGCCAGGATTCGAGTATAGAAGTG 59.720 45.833 0.00 0.00 31.94 3.16
110 111 4.559704 GCCAGGATTCGAGTATAGAAGTGG 60.560 50.000 0.00 0.00 31.94 4.00
111 112 4.551388 CAGGATTCGAGTATAGAAGTGGC 58.449 47.826 0.00 0.00 31.94 5.01
112 113 3.253677 AGGATTCGAGTATAGAAGTGGCG 59.746 47.826 0.00 0.00 31.94 5.69
113 114 3.566523 GATTCGAGTATAGAAGTGGCGG 58.433 50.000 0.00 0.00 31.94 6.13
114 115 2.336945 TCGAGTATAGAAGTGGCGGA 57.663 50.000 0.00 0.00 0.00 5.54
115 116 2.219458 TCGAGTATAGAAGTGGCGGAG 58.781 52.381 0.00 0.00 0.00 4.63
116 117 6.339974 ATTCGAGTATAGAAGTGGCGGAGC 62.340 50.000 0.00 0.00 43.68 4.70
128 129 3.211288 CGGAGCCAGGATTCGAGT 58.789 61.111 0.00 0.00 0.00 4.18
129 130 2.415825 CGGAGCCAGGATTCGAGTA 58.584 57.895 0.00 0.00 0.00 2.59
130 131 0.962489 CGGAGCCAGGATTCGAGTAT 59.038 55.000 0.00 0.00 0.00 2.12
131 132 2.160205 CGGAGCCAGGATTCGAGTATA 58.840 52.381 0.00 0.00 0.00 1.47
132 133 2.162608 CGGAGCCAGGATTCGAGTATAG 59.837 54.545 0.00 0.00 0.00 1.31
133 134 3.422796 GGAGCCAGGATTCGAGTATAGA 58.577 50.000 0.00 0.00 0.00 1.98
134 135 3.442273 GGAGCCAGGATTCGAGTATAGAG 59.558 52.174 0.00 0.00 0.00 2.43
135 136 3.426615 AGCCAGGATTCGAGTATAGAGG 58.573 50.000 0.00 0.00 0.00 3.69
136 137 2.494073 GCCAGGATTCGAGTATAGAGGG 59.506 54.545 0.00 0.00 0.00 4.30
137 138 3.093057 CCAGGATTCGAGTATAGAGGGG 58.907 54.545 0.00 0.00 0.00 4.79
138 139 3.093057 CAGGATTCGAGTATAGAGGGGG 58.907 54.545 0.00 0.00 0.00 5.40
139 140 1.826096 GGATTCGAGTATAGAGGGGGC 59.174 57.143 0.00 0.00 0.00 5.80
140 141 1.826096 GATTCGAGTATAGAGGGGGCC 59.174 57.143 0.00 0.00 0.00 5.80
141 142 0.538977 TTCGAGTATAGAGGGGGCCG 60.539 60.000 0.00 0.00 0.00 6.13
142 143 1.074423 CGAGTATAGAGGGGGCCGA 59.926 63.158 0.00 0.00 0.00 5.54
143 144 0.961358 CGAGTATAGAGGGGGCCGAG 60.961 65.000 0.00 0.00 0.00 4.63
144 145 0.112801 GAGTATAGAGGGGGCCGAGT 59.887 60.000 0.00 0.00 0.00 4.18
145 146 1.353694 GAGTATAGAGGGGGCCGAGTA 59.646 57.143 0.00 0.00 0.00 2.59
146 147 1.075212 AGTATAGAGGGGGCCGAGTAC 59.925 57.143 0.00 0.00 0.00 2.73
147 148 0.037303 TATAGAGGGGGCCGAGTACG 59.963 60.000 0.00 0.00 39.43 3.67
148 149 2.004408 ATAGAGGGGGCCGAGTACGT 62.004 60.000 0.00 0.00 37.88 3.57
149 150 1.344953 TAGAGGGGGCCGAGTACGTA 61.345 60.000 0.00 0.00 37.88 3.57
150 151 1.530183 GAGGGGGCCGAGTACGTAT 60.530 63.158 0.00 0.00 37.88 3.06
151 152 0.250901 GAGGGGGCCGAGTACGTATA 60.251 60.000 0.00 0.00 37.88 1.47
152 153 0.407139 AGGGGGCCGAGTACGTATAT 59.593 55.000 0.00 0.00 37.88 0.86
153 154 1.203100 AGGGGGCCGAGTACGTATATT 60.203 52.381 0.00 0.00 37.88 1.28
154 155 1.067354 GGGGGCCGAGTACGTATATTG 60.067 57.143 0.00 0.00 37.88 1.90
155 156 1.888512 GGGGCCGAGTACGTATATTGA 59.111 52.381 0.00 0.00 37.88 2.57
156 157 2.494870 GGGGCCGAGTACGTATATTGAT 59.505 50.000 0.00 0.00 37.88 2.57
157 158 3.428589 GGGGCCGAGTACGTATATTGATC 60.429 52.174 0.00 0.00 37.88 2.92
158 159 3.423571 GGCCGAGTACGTATATTGATCG 58.576 50.000 0.00 2.83 37.88 3.69
159 160 3.125829 GGCCGAGTACGTATATTGATCGA 59.874 47.826 0.00 0.00 37.88 3.59
160 161 4.378770 GGCCGAGTACGTATATTGATCGAA 60.379 45.833 0.00 0.00 37.88 3.71
161 162 5.330295 GCCGAGTACGTATATTGATCGAAT 58.670 41.667 0.00 0.00 37.88 3.34
162 163 5.451662 GCCGAGTACGTATATTGATCGAATC 59.548 44.000 0.00 0.00 37.88 2.52
163 164 6.675002 GCCGAGTACGTATATTGATCGAATCT 60.675 42.308 0.00 0.00 37.88 2.40
164 165 7.242079 CCGAGTACGTATATTGATCGAATCTT 58.758 38.462 0.00 0.00 37.88 2.40
165 166 7.216505 CCGAGTACGTATATTGATCGAATCTTG 59.783 40.741 0.00 0.00 37.88 3.02
166 167 7.745155 CGAGTACGTATATTGATCGAATCTTGT 59.255 37.037 0.00 0.00 34.56 3.16
167 168 9.395707 GAGTACGTATATTGATCGAATCTTGTT 57.604 33.333 0.00 0.00 0.00 2.83
168 169 9.181805 AGTACGTATATTGATCGAATCTTGTTG 57.818 33.333 0.00 0.00 0.00 3.33
169 170 9.177304 GTACGTATATTGATCGAATCTTGTTGA 57.823 33.333 0.00 0.00 0.00 3.18
170 171 8.818141 ACGTATATTGATCGAATCTTGTTGAT 57.182 30.769 0.00 0.00 36.89 2.57
171 172 9.908152 ACGTATATTGATCGAATCTTGTTGATA 57.092 29.630 0.00 0.00 34.45 2.15
183 184 9.638300 CGAATCTTGTTGATAATTACTAGTTGC 57.362 33.333 0.00 0.00 34.45 4.17
187 188 9.944376 TCTTGTTGATAATTACTAGTTGCTTCT 57.056 29.630 0.00 0.00 0.00 2.85
510 511 4.796495 GCCCCTGGCCGTTAGGTG 62.796 72.222 6.84 0.00 44.06 4.00
511 512 4.109675 CCCCTGGCCGTTAGGTGG 62.110 72.222 6.84 4.24 40.50 4.61
521 522 3.366440 CCGTTAGGTGGCACTATACTC 57.634 52.381 18.45 0.00 0.00 2.59
522 523 2.691526 CCGTTAGGTGGCACTATACTCA 59.308 50.000 18.45 0.00 0.00 3.41
523 524 3.321111 CCGTTAGGTGGCACTATACTCAT 59.679 47.826 18.45 0.00 0.00 2.90
524 525 4.299155 CGTTAGGTGGCACTATACTCATG 58.701 47.826 18.45 0.00 0.00 3.07
525 526 2.918712 AGGTGGCACTATACTCATGC 57.081 50.000 18.45 0.00 38.68 4.06
531 532 2.550978 GCACTATACTCATGCCGTTGT 58.449 47.619 0.00 0.00 33.06 3.32
532 533 3.713288 GCACTATACTCATGCCGTTGTA 58.287 45.455 0.00 0.00 33.06 2.41
533 534 3.489785 GCACTATACTCATGCCGTTGTAC 59.510 47.826 0.00 0.00 33.06 2.90
534 535 4.049186 CACTATACTCATGCCGTTGTACC 58.951 47.826 0.00 0.00 0.00 3.34
535 536 2.218953 ATACTCATGCCGTTGTACCG 57.781 50.000 0.00 0.00 0.00 4.02
536 537 0.458889 TACTCATGCCGTTGTACCGC 60.459 55.000 0.00 0.00 0.00 5.68
537 538 1.447838 CTCATGCCGTTGTACCGCT 60.448 57.895 0.00 0.00 0.00 5.52
538 539 1.421410 CTCATGCCGTTGTACCGCTC 61.421 60.000 0.00 0.00 0.00 5.03
539 540 1.739929 CATGCCGTTGTACCGCTCA 60.740 57.895 0.00 0.00 0.00 4.26
540 541 1.447838 ATGCCGTTGTACCGCTCAG 60.448 57.895 0.00 0.00 0.00 3.35
542 543 2.813908 CCGTTGTACCGCTCAGGC 60.814 66.667 0.00 0.00 46.52 4.85
543 544 2.048597 CGTTGTACCGCTCAGGCA 60.049 61.111 0.00 0.00 46.52 4.75
544 545 2.094659 CGTTGTACCGCTCAGGCAG 61.095 63.158 0.00 0.00 46.52 4.85
545 546 1.292223 GTTGTACCGCTCAGGCAGA 59.708 57.895 0.00 0.00 46.52 4.26
546 547 1.014564 GTTGTACCGCTCAGGCAGAC 61.015 60.000 0.00 0.00 46.52 3.51
547 548 1.468506 TTGTACCGCTCAGGCAGACA 61.469 55.000 0.00 0.00 46.52 3.41
548 549 1.292223 GTACCGCTCAGGCAGACAA 59.708 57.895 0.00 0.00 46.52 3.18
549 550 0.108138 GTACCGCTCAGGCAGACAAT 60.108 55.000 0.00 0.00 46.52 2.71
550 551 0.613260 TACCGCTCAGGCAGACAATT 59.387 50.000 0.00 0.00 46.52 2.32
551 552 0.250901 ACCGCTCAGGCAGACAATTT 60.251 50.000 0.00 0.00 46.52 1.82
552 553 0.449388 CCGCTCAGGCAGACAATTTC 59.551 55.000 0.00 0.00 38.60 2.17
553 554 1.159285 CGCTCAGGCAGACAATTTCA 58.841 50.000 0.00 0.00 38.60 2.69
554 555 1.741706 CGCTCAGGCAGACAATTTCAT 59.258 47.619 0.00 0.00 38.60 2.57
555 556 2.477357 CGCTCAGGCAGACAATTTCATG 60.477 50.000 0.00 0.00 38.60 3.07
556 557 2.159282 GCTCAGGCAGACAATTTCATGG 60.159 50.000 0.00 0.00 38.54 3.66
557 558 3.349927 CTCAGGCAGACAATTTCATGGA 58.650 45.455 0.00 0.00 0.00 3.41
558 559 3.084039 TCAGGCAGACAATTTCATGGAC 58.916 45.455 0.00 0.00 0.00 4.02
559 560 2.821378 CAGGCAGACAATTTCATGGACA 59.179 45.455 0.00 0.00 0.00 4.02
560 561 2.821969 AGGCAGACAATTTCATGGACAC 59.178 45.455 0.00 0.00 0.00 3.67
561 562 2.557924 GGCAGACAATTTCATGGACACA 59.442 45.455 0.00 0.00 0.00 3.72
562 563 3.568538 GCAGACAATTTCATGGACACAC 58.431 45.455 0.00 0.00 0.00 3.82
563 564 3.813800 CAGACAATTTCATGGACACACG 58.186 45.455 0.00 0.00 0.00 4.49
564 565 3.250762 CAGACAATTTCATGGACACACGT 59.749 43.478 0.00 0.00 0.00 4.49
565 566 3.882888 AGACAATTTCATGGACACACGTT 59.117 39.130 0.00 0.00 0.00 3.99
566 567 5.049749 CAGACAATTTCATGGACACACGTTA 60.050 40.000 0.00 0.00 0.00 3.18
567 568 5.179368 AGACAATTTCATGGACACACGTTAG 59.821 40.000 0.00 0.00 0.00 2.34
568 569 4.819630 ACAATTTCATGGACACACGTTAGT 59.180 37.500 0.00 0.00 0.00 2.24
569 570 5.298276 ACAATTTCATGGACACACGTTAGTT 59.702 36.000 0.00 0.00 0.00 2.24
570 571 6.483974 ACAATTTCATGGACACACGTTAGTTA 59.516 34.615 0.00 0.00 0.00 2.24
571 572 7.174253 ACAATTTCATGGACACACGTTAGTTAT 59.826 33.333 0.00 0.00 0.00 1.89
572 573 7.681939 ATTTCATGGACACACGTTAGTTATT 57.318 32.000 0.00 0.00 0.00 1.40
573 574 7.499321 TTTCATGGACACACGTTAGTTATTT 57.501 32.000 0.00 0.00 0.00 1.40
574 575 7.499321 TTCATGGACACACGTTAGTTATTTT 57.501 32.000 0.00 0.00 0.00 1.82
575 576 7.499321 TCATGGACACACGTTAGTTATTTTT 57.501 32.000 0.00 0.00 0.00 1.94
576 577 7.577979 TCATGGACACACGTTAGTTATTTTTC 58.422 34.615 0.00 0.00 0.00 2.29
577 578 6.303021 TGGACACACGTTAGTTATTTTTCC 57.697 37.500 0.00 0.00 0.00 3.13
578 579 5.050227 TGGACACACGTTAGTTATTTTTCCG 60.050 40.000 0.00 0.00 0.00 4.30
579 580 5.347012 ACACACGTTAGTTATTTTTCCGG 57.653 39.130 0.00 0.00 0.00 5.14
580 581 4.815846 ACACACGTTAGTTATTTTTCCGGT 59.184 37.500 0.00 0.00 0.00 5.28
581 582 5.296531 ACACACGTTAGTTATTTTTCCGGTT 59.703 36.000 0.00 0.00 0.00 4.44
582 583 5.622041 CACACGTTAGTTATTTTTCCGGTTG 59.378 40.000 0.00 0.00 0.00 3.77
583 584 4.613866 CACGTTAGTTATTTTTCCGGTTGC 59.386 41.667 0.00 0.00 0.00 4.17
584 585 4.275443 ACGTTAGTTATTTTTCCGGTTGCA 59.725 37.500 0.00 0.00 0.00 4.08
585 586 5.213675 CGTTAGTTATTTTTCCGGTTGCAA 58.786 37.500 0.00 0.00 0.00 4.08
586 587 5.115923 CGTTAGTTATTTTTCCGGTTGCAAC 59.884 40.000 21.59 21.59 0.00 4.17
587 588 3.634283 AGTTATTTTTCCGGTTGCAACG 58.366 40.909 22.67 17.02 0.00 4.10
588 589 2.053282 TATTTTTCCGGTTGCAACGC 57.947 45.000 22.67 14.53 0.00 4.84
589 590 0.103208 ATTTTTCCGGTTGCAACGCA 59.897 45.000 22.67 6.57 36.47 5.24
590 591 0.802607 TTTTTCCGGTTGCAACGCAC 60.803 50.000 22.67 8.75 38.71 5.34
591 592 2.921538 TTTTCCGGTTGCAACGCACG 62.922 55.000 22.67 19.36 38.71 5.34
592 593 4.893601 TCCGGTTGCAACGCACGA 62.894 61.111 22.67 12.08 38.71 4.35
593 594 4.368808 CCGGTTGCAACGCACGAG 62.369 66.667 22.67 10.99 38.71 4.18
595 596 3.947841 GGTTGCAACGCACGAGCA 61.948 61.111 22.67 9.96 38.71 4.26
596 597 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
597 598 1.370414 GTTGCAACGCACGAGCATT 60.370 52.632 14.90 0.00 38.71 3.56
598 599 0.934436 GTTGCAACGCACGAGCATTT 60.934 50.000 14.90 0.00 38.71 2.32
599 600 0.933973 TTGCAACGCACGAGCATTTG 60.934 50.000 13.57 8.55 38.71 2.32
600 601 1.370414 GCAACGCACGAGCATTTGT 60.370 52.632 14.66 0.00 42.27 2.83
601 602 1.599422 GCAACGCACGAGCATTTGTG 61.599 55.000 14.66 0.23 42.27 3.33
602 603 0.316937 CAACGCACGAGCATTTGTGT 60.317 50.000 5.50 0.00 40.30 3.72
603 604 0.380378 AACGCACGAGCATTTGTGTT 59.620 45.000 5.50 0.00 40.71 3.32
604 605 1.222300 ACGCACGAGCATTTGTGTTA 58.778 45.000 5.50 0.00 40.30 2.41
605 606 1.194547 ACGCACGAGCATTTGTGTTAG 59.805 47.619 5.50 0.00 40.30 2.34
634 635 0.333993 AGCTTTCATGAGGCCCACAT 59.666 50.000 15.87 2.62 0.00 3.21
656 657 3.410631 TGAATAAACAGAAGGCCGTGA 57.589 42.857 0.00 0.00 0.00 4.35
673 674 3.313690 CGTGAAAAGGCCCATAAACAAC 58.686 45.455 0.00 0.00 0.00 3.32
675 676 4.216687 CGTGAAAAGGCCCATAAACAACTA 59.783 41.667 0.00 0.00 0.00 2.24
676 677 5.278561 CGTGAAAAGGCCCATAAACAACTAA 60.279 40.000 0.00 0.00 0.00 2.24
678 679 6.422701 GTGAAAAGGCCCATAAACAACTAAAC 59.577 38.462 0.00 0.00 0.00 2.01
704 718 4.577693 ACATCGACGTTCCTATAGTTGCTA 59.422 41.667 0.00 0.00 0.00 3.49
738 757 3.506810 GCTCCTTTATCATCGATCGAGG 58.493 50.000 22.99 22.99 0.00 4.63
781 803 0.865111 CCTTCGCATCAACACGTCAA 59.135 50.000 0.00 0.00 0.00 3.18
861 890 4.124238 CGTCCAAGTTTAAACTGGAGTCA 58.876 43.478 26.45 12.42 39.66 3.41
886 916 0.032267 CGCCTCCGATTCCTCCTTAC 59.968 60.000 0.00 0.00 36.29 2.34
913 967 2.412429 ACGCACGAACGCAATAAATACA 59.588 40.909 0.00 0.00 36.19 2.29
932 992 0.106619 ATACGACGGCCTCCTCTTCT 60.107 55.000 0.00 0.00 0.00 2.85
933 993 0.747283 TACGACGGCCTCCTCTTCTC 60.747 60.000 0.00 0.00 0.00 2.87
936 1006 1.950973 GACGGCCTCCTCTTCTCCAC 61.951 65.000 0.00 0.00 0.00 4.02
941 1011 1.339535 GCCTCCTCTTCTCCACCAAAG 60.340 57.143 0.00 0.00 0.00 2.77
942 1012 1.339535 CCTCCTCTTCTCCACCAAAGC 60.340 57.143 0.00 0.00 0.00 3.51
943 1013 1.349026 CTCCTCTTCTCCACCAAAGCA 59.651 52.381 0.00 0.00 0.00 3.91
946 1016 2.294512 CCTCTTCTCCACCAAAGCAAAC 59.705 50.000 0.00 0.00 0.00 2.93
948 1018 2.031120 CTTCTCCACCAAAGCAAACCA 58.969 47.619 0.00 0.00 0.00 3.67
959 1029 4.405196 CAAAGCAAACCAAAGCAAAACAG 58.595 39.130 0.00 0.00 0.00 3.16
960 1030 3.608316 AGCAAACCAAAGCAAAACAGA 57.392 38.095 0.00 0.00 0.00 3.41
964 1034 4.332268 GCAAACCAAAGCAAAACAGATCAA 59.668 37.500 0.00 0.00 0.00 2.57
978 1052 0.510359 GATCAATCGACATGGCTCGC 59.490 55.000 0.00 0.00 33.47 5.03
981 1055 3.723235 AATCGACATGGCTCGCGCT 62.723 57.895 5.56 0.00 36.09 5.92
982 1056 4.854784 TCGACATGGCTCGCGCTC 62.855 66.667 5.56 0.00 36.09 5.03
1014 1091 2.124612 TCCATGTGGATGCTGGCG 60.125 61.111 0.00 0.00 39.78 5.69
1015 1092 3.214123 CCATGTGGATGCTGGCGG 61.214 66.667 0.00 0.00 37.39 6.13
1503 1598 2.182030 CTCGGCGAGAAGGTCACC 59.818 66.667 32.07 0.00 0.00 4.02
1590 1685 4.388499 ATCGCCGGGCTCAACGTT 62.388 61.111 18.34 0.00 0.00 3.99
1656 1757 3.387947 GACGAGAAGGGGCCCGAA 61.388 66.667 18.95 0.00 0.00 4.30
2307 2420 4.773117 GAGACGGTCGGCGGTGTC 62.773 72.222 4.44 7.08 32.80 3.67
2313 2426 2.813908 GTCGGCGGTGTCATGACC 60.814 66.667 22.85 13.66 0.00 4.02
2520 2633 1.154263 CGAGGTGACGTTCGAGGTC 60.154 63.158 10.72 10.72 39.06 3.85
2745 2859 0.742505 TCAAGAACACCGTCGACAGT 59.257 50.000 17.16 7.63 0.00 3.55
2803 2917 3.785859 TCCAGGATGCGGTGAGGC 61.786 66.667 0.00 0.00 31.97 4.70
2903 3017 1.138859 CTGCAACCCTATCATCACGGA 59.861 52.381 0.00 0.00 0.00 4.69
2967 3081 0.377554 AGGACGACGACGATCATGAC 59.622 55.000 15.32 0.00 42.66 3.06
3230 3344 1.209621 GGGTGTTGTATCCTAGCCCA 58.790 55.000 0.00 0.00 34.95 5.36
3235 3349 3.389983 GTGTTGTATCCTAGCCCACCATA 59.610 47.826 0.00 0.00 0.00 2.74
3237 3351 4.041567 TGTTGTATCCTAGCCCACCATATG 59.958 45.833 0.00 0.00 0.00 1.78
3246 3360 5.882557 CCTAGCCCACCATATGATATCAAAC 59.117 44.000 9.99 0.00 0.00 2.93
3247 3361 4.666512 AGCCCACCATATGATATCAAACC 58.333 43.478 9.99 0.00 0.00 3.27
3248 3362 4.106179 AGCCCACCATATGATATCAAACCA 59.894 41.667 9.99 0.00 0.00 3.67
3249 3363 4.218417 GCCCACCATATGATATCAAACCAC 59.782 45.833 9.99 0.00 0.00 4.16
3250 3364 4.766891 CCCACCATATGATATCAAACCACC 59.233 45.833 9.99 0.00 0.00 4.61
3251 3365 5.458069 CCCACCATATGATATCAAACCACCT 60.458 44.000 9.99 0.00 0.00 4.00
3259 3396 1.463674 ATCAAACCACCTGCGGATTC 58.536 50.000 0.00 0.00 0.00 2.52
3268 3405 2.417933 CACCTGCGGATTCTTCTTTCAG 59.582 50.000 0.00 0.00 0.00 3.02
3271 3408 3.329386 CTGCGGATTCTTCTTTCAGTGA 58.671 45.455 0.00 0.00 0.00 3.41
3283 3422 2.839486 TTCAGTGAGAGGCGATGTTT 57.161 45.000 0.00 0.00 0.00 2.83
3284 3423 2.370281 TCAGTGAGAGGCGATGTTTC 57.630 50.000 0.00 0.00 0.00 2.78
3294 3433 5.978814 AGAGGCGATGTTTCTGTTAATAGT 58.021 37.500 0.00 0.00 0.00 2.12
3295 3434 5.812642 AGAGGCGATGTTTCTGTTAATAGTG 59.187 40.000 0.00 0.00 0.00 2.74
3302 3441 8.535592 CGATGTTTCTGTTAATAGTGAGATGTC 58.464 37.037 0.00 0.00 0.00 3.06
3310 3449 9.619316 CTGTTAATAGTGAGATGTCTATAGTGC 57.381 37.037 0.00 0.00 0.00 4.40
3317 3456 5.751028 GTGAGATGTCTATAGTGCCTTTGTC 59.249 44.000 0.00 0.00 0.00 3.18
3319 3458 6.070824 TGAGATGTCTATAGTGCCTTTGTCAA 60.071 38.462 0.00 0.00 0.00 3.18
3326 3465 9.109393 GTCTATAGTGCCTTTGTCAATATCAAA 57.891 33.333 0.00 0.00 34.34 2.69
3330 3469 5.539955 AGTGCCTTTGTCAATATCAAAACCT 59.460 36.000 0.00 0.00 34.96 3.50
3332 3471 5.304101 TGCCTTTGTCAATATCAAAACCTGT 59.696 36.000 0.00 0.00 34.96 4.00
3334 3473 7.029563 GCCTTTGTCAATATCAAAACCTGTAG 58.970 38.462 0.00 0.00 34.96 2.74
3340 3479 6.543831 GTCAATATCAAAACCTGTAGGCTCAT 59.456 38.462 0.00 0.00 39.32 2.90
3341 3480 7.067494 GTCAATATCAAAACCTGTAGGCTCATT 59.933 37.037 0.00 0.00 39.32 2.57
3350 3489 3.131223 CCTGTAGGCTCATTCTCTCGAAA 59.869 47.826 0.00 0.00 31.91 3.46
3358 3497 5.277250 GGCTCATTCTCTCGAAAATGCTTAG 60.277 44.000 9.03 4.74 33.76 2.18
3359 3498 5.293079 GCTCATTCTCTCGAAAATGCTTAGT 59.707 40.000 9.03 0.00 33.76 2.24
3360 3499 6.477033 GCTCATTCTCTCGAAAATGCTTAGTA 59.523 38.462 9.03 0.00 33.76 1.82
3362 3501 9.684448 CTCATTCTCTCGAAAATGCTTAGTATA 57.316 33.333 9.03 0.00 33.76 1.47
3385 3528 1.819928 ATACGTGCATGCCTTCACAA 58.180 45.000 16.68 0.00 33.03 3.33
3387 3530 0.534877 ACGTGCATGCCTTCACAAGA 60.535 50.000 16.68 0.00 33.03 3.02
3394 3537 3.691118 GCATGCCTTCACAAGAATGAGTA 59.309 43.478 6.36 0.00 32.31 2.59
3400 3543 6.539826 TGCCTTCACAAGAATGAGTATATGTG 59.460 38.462 0.00 0.00 39.50 3.21
3402 3545 7.042187 GCCTTCACAAGAATGAGTATATGTGAG 60.042 40.741 6.52 0.00 45.31 3.51
3405 3548 6.758416 TCACAAGAATGAGTATATGTGAGCAC 59.242 38.462 2.54 0.00 41.39 4.40
3407 3550 5.220710 AGAATGAGTATATGTGAGCACCC 57.779 43.478 0.00 0.00 0.00 4.61
3410 3553 2.100749 TGAGTATATGTGAGCACCCGTG 59.899 50.000 0.00 0.00 0.00 4.94
3411 3554 2.100916 GAGTATATGTGAGCACCCGTGT 59.899 50.000 0.00 0.00 0.00 4.49
3412 3555 3.293337 AGTATATGTGAGCACCCGTGTA 58.707 45.455 0.00 0.00 0.00 2.90
3413 3556 3.895656 AGTATATGTGAGCACCCGTGTAT 59.104 43.478 0.00 0.00 0.00 2.29
3414 3557 2.595124 TATGTGAGCACCCGTGTATG 57.405 50.000 0.00 0.00 0.00 2.39
3415 3558 0.613260 ATGTGAGCACCCGTGTATGT 59.387 50.000 0.00 0.00 0.00 2.29
3416 3559 1.258676 TGTGAGCACCCGTGTATGTA 58.741 50.000 0.00 0.00 0.00 2.29
3419 3562 3.639561 TGTGAGCACCCGTGTATGTATAT 59.360 43.478 0.00 0.00 0.00 0.86
3427 3570 8.369424 AGCACCCGTGTATGTATATTATGTTTA 58.631 33.333 0.00 0.00 0.00 2.01
3466 3610 2.849942 TCTTGATGTTATGGCCGATGG 58.150 47.619 0.00 0.00 0.00 3.51
3485 3629 2.770164 GTGTTCTCCTAGCACCACAT 57.230 50.000 0.00 0.00 33.48 3.21
3486 3630 2.350522 GTGTTCTCCTAGCACCACATG 58.649 52.381 0.00 0.00 33.48 3.21
3499 3643 3.342719 CACCACATGCACCATAACTACA 58.657 45.455 0.00 0.00 0.00 2.74
3500 3644 3.126858 CACCACATGCACCATAACTACAC 59.873 47.826 0.00 0.00 0.00 2.90
3501 3645 2.351418 CCACATGCACCATAACTACACG 59.649 50.000 0.00 0.00 0.00 4.49
3502 3646 2.351418 CACATGCACCATAACTACACGG 59.649 50.000 0.00 0.00 0.00 4.94
3503 3647 2.235155 ACATGCACCATAACTACACGGA 59.765 45.455 0.00 0.00 0.00 4.69
3504 3648 2.665649 TGCACCATAACTACACGGAG 57.334 50.000 0.00 0.00 0.00 4.63
3505 3649 1.206132 TGCACCATAACTACACGGAGG 59.794 52.381 0.00 0.00 0.00 4.30
3506 3650 1.479323 GCACCATAACTACACGGAGGA 59.521 52.381 0.00 0.00 0.00 3.71
3507 3651 2.093869 GCACCATAACTACACGGAGGAA 60.094 50.000 0.00 0.00 0.00 3.36
3508 3652 3.782046 CACCATAACTACACGGAGGAAG 58.218 50.000 0.00 0.00 0.00 3.46
3509 3653 3.446161 CACCATAACTACACGGAGGAAGA 59.554 47.826 0.00 0.00 0.00 2.87
3510 3654 3.446516 ACCATAACTACACGGAGGAAGAC 59.553 47.826 0.00 0.00 0.00 3.01
3511 3655 3.446161 CCATAACTACACGGAGGAAGACA 59.554 47.826 0.00 0.00 0.00 3.41
3512 3656 4.421948 CATAACTACACGGAGGAAGACAC 58.578 47.826 0.00 0.00 0.00 3.67
3513 3657 1.991121 ACTACACGGAGGAAGACACA 58.009 50.000 0.00 0.00 0.00 3.72
3514 3658 2.313317 ACTACACGGAGGAAGACACAA 58.687 47.619 0.00 0.00 0.00 3.33
3515 3659 2.296471 ACTACACGGAGGAAGACACAAG 59.704 50.000 0.00 0.00 0.00 3.16
3516 3660 1.120530 ACACGGAGGAAGACACAAGT 58.879 50.000 0.00 0.00 0.00 3.16
3517 3661 1.202533 ACACGGAGGAAGACACAAGTG 60.203 52.381 0.00 0.00 34.85 3.16
3518 3662 0.393077 ACGGAGGAAGACACAAGTGG 59.607 55.000 5.08 0.00 34.19 4.00
3519 3663 0.320771 CGGAGGAAGACACAAGTGGG 60.321 60.000 5.08 0.00 34.19 4.61
3520 3664 0.606673 GGAGGAAGACACAAGTGGGC 60.607 60.000 5.08 0.00 34.19 5.36
3521 3665 0.951040 GAGGAAGACACAAGTGGGCG 60.951 60.000 5.08 0.00 34.19 6.13
3522 3666 2.617274 GGAAGACACAAGTGGGCGC 61.617 63.158 0.00 0.00 34.19 6.53
3523 3667 1.598130 GAAGACACAAGTGGGCGCT 60.598 57.895 7.64 0.00 34.19 5.92
3524 3668 1.152963 AAGACACAAGTGGGCGCTT 60.153 52.632 7.64 0.00 34.19 4.68
3525 3669 1.166531 AAGACACAAGTGGGCGCTTC 61.167 55.000 7.64 0.02 34.19 3.86
3526 3670 1.891919 GACACAAGTGGGCGCTTCA 60.892 57.895 7.64 3.23 34.19 3.02
3527 3671 1.845809 GACACAAGTGGGCGCTTCAG 61.846 60.000 7.64 0.00 34.19 3.02
3528 3672 2.980233 ACAAGTGGGCGCTTCAGC 60.980 61.111 7.64 2.05 37.78 4.26
3536 3680 2.359230 GCGCTTCAGCCACCTCTT 60.359 61.111 0.00 0.00 37.91 2.85
3537 3681 1.079127 GCGCTTCAGCCACCTCTTA 60.079 57.895 0.00 0.00 37.91 2.10
3538 3682 0.462759 GCGCTTCAGCCACCTCTTAT 60.463 55.000 0.00 0.00 37.91 1.73
3539 3683 2.014068 GCGCTTCAGCCACCTCTTATT 61.014 52.381 0.00 0.00 37.91 1.40
3540 3684 2.359900 CGCTTCAGCCACCTCTTATTT 58.640 47.619 0.00 0.00 37.91 1.40
3541 3685 3.531538 CGCTTCAGCCACCTCTTATTTA 58.468 45.455 0.00 0.00 37.91 1.40
3542 3686 4.130118 CGCTTCAGCCACCTCTTATTTAT 58.870 43.478 0.00 0.00 37.91 1.40
3543 3687 4.024556 CGCTTCAGCCACCTCTTATTTATG 60.025 45.833 0.00 0.00 37.91 1.90
3544 3688 4.261363 GCTTCAGCCACCTCTTATTTATGC 60.261 45.833 0.00 0.00 34.31 3.14
3545 3689 4.502105 TCAGCCACCTCTTATTTATGCA 57.498 40.909 0.00 0.00 0.00 3.96
3546 3690 4.454678 TCAGCCACCTCTTATTTATGCAG 58.545 43.478 0.00 0.00 0.00 4.41
3547 3691 4.164030 TCAGCCACCTCTTATTTATGCAGA 59.836 41.667 0.00 0.00 0.00 4.26
3548 3692 5.068636 CAGCCACCTCTTATTTATGCAGAT 58.931 41.667 0.00 0.00 0.00 2.90
3549 3693 6.043127 TCAGCCACCTCTTATTTATGCAGATA 59.957 38.462 0.00 0.00 0.00 1.98
3550 3694 6.883217 CAGCCACCTCTTATTTATGCAGATAT 59.117 38.462 0.00 0.00 0.00 1.63
3551 3695 8.043113 CAGCCACCTCTTATTTATGCAGATATA 58.957 37.037 0.00 0.00 0.00 0.86
3552 3696 8.776119 AGCCACCTCTTATTTATGCAGATATAT 58.224 33.333 0.00 0.00 0.00 0.86
3577 3721 5.999205 ATACCCTTGAAAATCAATGCACA 57.001 34.783 0.00 0.00 35.59 4.57
3578 3722 4.895668 ACCCTTGAAAATCAATGCACAT 57.104 36.364 0.00 0.00 35.59 3.21
3579 3723 4.824289 ACCCTTGAAAATCAATGCACATC 58.176 39.130 0.00 0.00 35.59 3.06
3580 3724 4.283978 ACCCTTGAAAATCAATGCACATCA 59.716 37.500 0.00 0.00 35.59 3.07
3581 3725 5.046159 ACCCTTGAAAATCAATGCACATCAT 60.046 36.000 0.00 0.00 35.59 2.45
3582 3726 6.154877 ACCCTTGAAAATCAATGCACATCATA 59.845 34.615 0.00 0.00 35.59 2.15
3583 3727 7.147620 ACCCTTGAAAATCAATGCACATCATAT 60.148 33.333 0.00 0.00 35.59 1.78
3584 3728 7.713507 CCCTTGAAAATCAATGCACATCATATT 59.286 33.333 0.00 0.00 35.59 1.28
3585 3729 8.547894 CCTTGAAAATCAATGCACATCATATTG 58.452 33.333 0.00 0.00 35.59 1.90
3586 3730 9.093970 CTTGAAAATCAATGCACATCATATTGT 57.906 29.630 0.00 0.00 35.59 2.71
3587 3731 8.637281 TGAAAATCAATGCACATCATATTGTC 57.363 30.769 0.00 0.00 34.33 3.18
3588 3732 8.251721 TGAAAATCAATGCACATCATATTGTCA 58.748 29.630 0.00 0.00 30.45 3.58
3589 3733 9.256477 GAAAATCAATGCACATCATATTGTCAT 57.744 29.630 0.00 0.00 34.33 3.06
3590 3734 8.587952 AAATCAATGCACATCATATTGTCATG 57.412 30.769 0.00 0.00 34.33 3.07
3591 3735 6.079424 TCAATGCACATCATATTGTCATGG 57.921 37.500 0.00 0.00 34.33 3.66
3592 3736 5.010213 TCAATGCACATCATATTGTCATGGG 59.990 40.000 0.00 0.00 34.33 4.00
3593 3737 3.900971 TGCACATCATATTGTCATGGGT 58.099 40.909 0.00 0.00 0.00 4.51
3594 3738 4.279982 TGCACATCATATTGTCATGGGTT 58.720 39.130 0.00 0.00 0.00 4.11
3595 3739 4.338964 TGCACATCATATTGTCATGGGTTC 59.661 41.667 0.00 0.00 0.00 3.62
3596 3740 4.581824 GCACATCATATTGTCATGGGTTCT 59.418 41.667 0.00 0.00 0.00 3.01
3597 3741 5.068198 GCACATCATATTGTCATGGGTTCTT 59.932 40.000 0.00 0.00 0.00 2.52
3598 3742 6.500910 CACATCATATTGTCATGGGTTCTTG 58.499 40.000 0.00 0.00 0.00 3.02
3599 3743 5.068198 ACATCATATTGTCATGGGTTCTTGC 59.932 40.000 0.00 0.00 0.00 4.01
3600 3744 4.858850 TCATATTGTCATGGGTTCTTGCT 58.141 39.130 0.00 0.00 0.00 3.91
3601 3745 4.883585 TCATATTGTCATGGGTTCTTGCTC 59.116 41.667 0.00 0.00 0.00 4.26
3602 3746 2.655090 TTGTCATGGGTTCTTGCTCA 57.345 45.000 0.00 0.00 0.00 4.26
3603 3747 1.896220 TGTCATGGGTTCTTGCTCAC 58.104 50.000 0.00 0.00 0.00 3.51
3604 3748 1.142667 TGTCATGGGTTCTTGCTCACA 59.857 47.619 0.00 0.00 0.00 3.58
3605 3749 1.537202 GTCATGGGTTCTTGCTCACAC 59.463 52.381 0.00 0.00 0.00 3.82
3606 3750 1.142667 TCATGGGTTCTTGCTCACACA 59.857 47.619 0.00 0.00 0.00 3.72
3607 3751 2.165167 CATGGGTTCTTGCTCACACAT 58.835 47.619 0.00 0.00 37.53 3.21
3608 3752 2.363306 TGGGTTCTTGCTCACACATT 57.637 45.000 0.00 0.00 0.00 2.71
3609 3753 2.665165 TGGGTTCTTGCTCACACATTT 58.335 42.857 0.00 0.00 0.00 2.32
3610 3754 3.826524 TGGGTTCTTGCTCACACATTTA 58.173 40.909 0.00 0.00 0.00 1.40
3611 3755 3.820467 TGGGTTCTTGCTCACACATTTAG 59.180 43.478 0.00 0.00 0.00 1.85
3612 3756 3.366374 GGGTTCTTGCTCACACATTTAGC 60.366 47.826 0.00 0.00 36.77 3.09
3613 3757 3.366374 GGTTCTTGCTCACACATTTAGCC 60.366 47.826 0.00 0.00 35.33 3.93
3614 3758 3.138884 TCTTGCTCACACATTTAGCCA 57.861 42.857 0.00 0.00 35.33 4.75
3615 3759 3.076621 TCTTGCTCACACATTTAGCCAG 58.923 45.455 0.00 0.00 35.33 4.85
3616 3760 2.857186 TGCTCACACATTTAGCCAGA 57.143 45.000 0.00 0.00 35.33 3.86
3617 3761 2.703416 TGCTCACACATTTAGCCAGAG 58.297 47.619 0.00 0.00 35.33 3.35
3618 3762 2.012673 GCTCACACATTTAGCCAGAGG 58.987 52.381 0.00 0.00 0.00 3.69
3630 3774 3.691342 CAGAGGCGGACCACGGAA 61.691 66.667 0.00 0.00 44.51 4.30
3631 3775 2.920912 AGAGGCGGACCACGGAAA 60.921 61.111 0.00 0.00 44.51 3.13
3632 3776 2.031465 GAGGCGGACCACGGAAAA 59.969 61.111 0.00 0.00 44.51 2.29
3633 3777 1.598685 GAGGCGGACCACGGAAAAA 60.599 57.895 0.00 0.00 44.51 1.94
3652 3796 4.929819 AAAAATTAAGGTGTGGCGAAGT 57.070 36.364 0.00 0.00 0.00 3.01
3653 3797 4.499037 AAAATTAAGGTGTGGCGAAGTC 57.501 40.909 0.00 0.00 0.00 3.01
3654 3798 3.418684 AATTAAGGTGTGGCGAAGTCT 57.581 42.857 0.00 0.00 0.00 3.24
3655 3799 2.450609 TTAAGGTGTGGCGAAGTCTC 57.549 50.000 0.00 0.00 0.00 3.36
3656 3800 1.334160 TAAGGTGTGGCGAAGTCTCA 58.666 50.000 0.00 0.00 31.37 3.27
3661 3805 2.724977 TGTGGCGAAGTCTCACTAAG 57.275 50.000 0.00 0.00 27.70 2.18
3662 3806 2.235891 TGTGGCGAAGTCTCACTAAGA 58.764 47.619 0.00 0.00 27.70 2.10
3663 3807 2.826128 TGTGGCGAAGTCTCACTAAGAT 59.174 45.455 0.00 0.00 36.11 2.40
3664 3808 3.258372 TGTGGCGAAGTCTCACTAAGATT 59.742 43.478 0.00 0.00 36.11 2.40
3665 3809 4.246458 GTGGCGAAGTCTCACTAAGATTT 58.754 43.478 0.00 0.00 36.71 2.17
3666 3810 4.691216 GTGGCGAAGTCTCACTAAGATTTT 59.309 41.667 0.00 0.00 34.36 1.82
3667 3811 5.179555 GTGGCGAAGTCTCACTAAGATTTTT 59.820 40.000 0.00 0.00 34.36 1.94
3736 3880 9.630098 CCAAATACAATGGAAATATAGACATGC 57.370 33.333 0.00 0.00 40.56 4.06
3783 6630 6.819284 ACCTTTTCAAATCTGCAATGAGAAA 58.181 32.000 0.00 0.00 0.00 2.52
3856 6713 9.814899 TGCTACAAAATTTCAGAAAAATGAGAA 57.185 25.926 0.00 0.00 0.00 2.87
3957 6814 3.208747 CCGGTTGGGCATCTTATTAGT 57.791 47.619 0.00 0.00 0.00 2.24
3958 6815 3.139077 CCGGTTGGGCATCTTATTAGTC 58.861 50.000 0.00 0.00 0.00 2.59
3959 6816 3.433031 CCGGTTGGGCATCTTATTAGTCA 60.433 47.826 0.00 0.00 0.00 3.41
3960 6817 3.809832 CGGTTGGGCATCTTATTAGTCAG 59.190 47.826 0.00 0.00 0.00 3.51
3961 6818 4.683400 CGGTTGGGCATCTTATTAGTCAGT 60.683 45.833 0.00 0.00 0.00 3.41
3962 6819 4.576463 GGTTGGGCATCTTATTAGTCAGTG 59.424 45.833 0.00 0.00 0.00 3.66
3963 6820 3.808728 TGGGCATCTTATTAGTCAGTGC 58.191 45.455 0.00 0.00 0.00 4.40
3965 6822 4.078639 GGCATCTTATTAGTCAGTGCCT 57.921 45.455 6.25 0.00 45.33 4.75
3966 6823 4.455606 GGCATCTTATTAGTCAGTGCCTT 58.544 43.478 6.25 0.00 45.33 4.35
3967 6824 4.884164 GGCATCTTATTAGTCAGTGCCTTT 59.116 41.667 6.25 0.00 45.33 3.11
3968 6825 5.008118 GGCATCTTATTAGTCAGTGCCTTTC 59.992 44.000 6.25 0.00 45.33 2.62
3969 6826 5.819901 GCATCTTATTAGTCAGTGCCTTTCT 59.180 40.000 0.00 0.00 0.00 2.52
3970 6827 6.238320 GCATCTTATTAGTCAGTGCCTTTCTG 60.238 42.308 0.00 0.00 0.00 3.02
3971 6828 6.360370 TCTTATTAGTCAGTGCCTTTCTGT 57.640 37.500 0.00 0.00 34.86 3.41
3972 6829 6.398918 TCTTATTAGTCAGTGCCTTTCTGTC 58.601 40.000 0.00 0.00 34.86 3.51
3973 6830 3.402628 TTAGTCAGTGCCTTTCTGTCC 57.597 47.619 0.00 0.00 34.86 4.02
3974 6831 1.131638 AGTCAGTGCCTTTCTGTCCA 58.868 50.000 0.00 0.00 34.86 4.02
3975 6832 1.701847 AGTCAGTGCCTTTCTGTCCAT 59.298 47.619 0.00 0.00 34.86 3.41
3976 6833 1.808945 GTCAGTGCCTTTCTGTCCATG 59.191 52.381 0.00 0.00 34.86 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.175467 TCAACTGTGCATTAGTCATGAAAGAAT 59.825 33.333 0.00 0.00 34.31 2.40
1 2 6.486320 TCAACTGTGCATTAGTCATGAAAGAA 59.514 34.615 0.00 0.00 34.31 2.52
2 3 5.997129 TCAACTGTGCATTAGTCATGAAAGA 59.003 36.000 0.00 0.00 34.31 2.52
3 4 6.245115 TCAACTGTGCATTAGTCATGAAAG 57.755 37.500 0.00 0.00 34.31 2.62
4 5 6.631971 TTCAACTGTGCATTAGTCATGAAA 57.368 33.333 14.02 0.00 34.31 2.69
5 6 6.822667 ATTCAACTGTGCATTAGTCATGAA 57.177 33.333 16.70 16.70 34.31 2.57
6 7 6.822667 AATTCAACTGTGCATTAGTCATGA 57.177 33.333 6.99 0.00 34.31 3.07
7 8 9.016623 CATTAATTCAACTGTGCATTAGTCATG 57.983 33.333 6.99 3.93 35.73 3.07
8 9 8.959548 TCATTAATTCAACTGTGCATTAGTCAT 58.040 29.630 6.99 0.00 0.00 3.06
9 10 8.334263 TCATTAATTCAACTGTGCATTAGTCA 57.666 30.769 6.99 0.00 0.00 3.41
10 11 9.793252 AATCATTAATTCAACTGTGCATTAGTC 57.207 29.630 6.99 0.00 0.00 2.59
14 15 9.715121 AGAAAATCATTAATTCAACTGTGCATT 57.285 25.926 0.00 0.00 0.00 3.56
15 16 9.715121 AAGAAAATCATTAATTCAACTGTGCAT 57.285 25.926 0.00 0.00 0.00 3.96
16 17 9.195411 GAAGAAAATCATTAATTCAACTGTGCA 57.805 29.630 0.00 0.00 0.00 4.57
17 18 9.195411 TGAAGAAAATCATTAATTCAACTGTGC 57.805 29.630 0.00 0.00 0.00 4.57
34 35 5.536916 TGTACACCGGGATTTTGAAGAAAAT 59.463 36.000 6.32 0.00 43.20 1.82
35 36 4.888239 TGTACACCGGGATTTTGAAGAAAA 59.112 37.500 6.32 0.00 35.52 2.29
36 37 4.276431 GTGTACACCGGGATTTTGAAGAAA 59.724 41.667 15.42 0.00 0.00 2.52
37 38 3.816523 GTGTACACCGGGATTTTGAAGAA 59.183 43.478 15.42 0.00 0.00 2.52
38 39 3.404899 GTGTACACCGGGATTTTGAAGA 58.595 45.455 15.42 0.00 0.00 2.87
39 40 2.486592 GGTGTACACCGGGATTTTGAAG 59.513 50.000 28.55 0.00 42.29 3.02
40 41 2.506444 GGTGTACACCGGGATTTTGAA 58.494 47.619 28.55 0.00 42.29 2.69
41 42 2.188062 GGTGTACACCGGGATTTTGA 57.812 50.000 28.55 0.00 42.29 2.69
52 53 1.657094 CGGCGACAAATAGGTGTACAC 59.343 52.381 18.01 18.01 0.00 2.90
53 54 1.273048 ACGGCGACAAATAGGTGTACA 59.727 47.619 16.62 0.00 0.00 2.90
54 55 2.000429 ACGGCGACAAATAGGTGTAC 58.000 50.000 16.62 0.00 0.00 2.90
55 56 2.747396 AACGGCGACAAATAGGTGTA 57.253 45.000 16.62 0.00 0.00 2.90
56 57 2.231964 TCTAACGGCGACAAATAGGTGT 59.768 45.455 16.62 0.00 0.00 4.16
57 58 2.883574 TCTAACGGCGACAAATAGGTG 58.116 47.619 16.62 0.00 0.00 4.00
58 59 3.056322 ACTTCTAACGGCGACAAATAGGT 60.056 43.478 16.62 0.00 0.00 3.08
59 60 3.306166 CACTTCTAACGGCGACAAATAGG 59.694 47.826 16.62 0.00 0.00 2.57
60 61 3.306166 CCACTTCTAACGGCGACAAATAG 59.694 47.826 16.62 7.90 0.00 1.73
61 62 3.255725 CCACTTCTAACGGCGACAAATA 58.744 45.455 16.62 0.00 0.00 1.40
62 63 2.073816 CCACTTCTAACGGCGACAAAT 58.926 47.619 16.62 0.00 0.00 2.32
63 64 1.504359 CCACTTCTAACGGCGACAAA 58.496 50.000 16.62 1.00 0.00 2.83
64 65 0.947180 GCCACTTCTAACGGCGACAA 60.947 55.000 16.62 0.00 35.79 3.18
65 66 1.373748 GCCACTTCTAACGGCGACA 60.374 57.895 16.62 0.00 35.79 4.35
66 67 3.471399 GCCACTTCTAACGGCGAC 58.529 61.111 16.62 0.00 35.79 5.19
69 70 1.810030 CTCCGCCACTTCTAACGGC 60.810 63.158 0.00 0.00 45.23 5.68
70 71 1.810030 GCTCCGCCACTTCTAACGG 60.810 63.158 0.00 0.00 46.97 4.44
71 72 3.782042 GCTCCGCCACTTCTAACG 58.218 61.111 0.00 0.00 0.00 3.18
82 83 1.735376 TACTCGAATCCTGGCTCCGC 61.735 60.000 0.00 0.00 0.00 5.54
83 84 0.962489 ATACTCGAATCCTGGCTCCG 59.038 55.000 0.00 0.00 0.00 4.63
84 85 3.422796 TCTATACTCGAATCCTGGCTCC 58.577 50.000 0.00 0.00 0.00 4.70
85 86 4.521256 ACTTCTATACTCGAATCCTGGCTC 59.479 45.833 0.00 0.00 0.00 4.70
86 87 4.279671 CACTTCTATACTCGAATCCTGGCT 59.720 45.833 0.00 0.00 0.00 4.75
87 88 4.551388 CACTTCTATACTCGAATCCTGGC 58.449 47.826 0.00 0.00 0.00 4.85
88 89 4.559704 GCCACTTCTATACTCGAATCCTGG 60.560 50.000 0.00 0.00 0.00 4.45
89 90 4.551388 GCCACTTCTATACTCGAATCCTG 58.449 47.826 0.00 0.00 0.00 3.86
90 91 3.253677 CGCCACTTCTATACTCGAATCCT 59.746 47.826 0.00 0.00 0.00 3.24
91 92 3.566523 CGCCACTTCTATACTCGAATCC 58.433 50.000 0.00 0.00 0.00 3.01
92 93 3.252701 TCCGCCACTTCTATACTCGAATC 59.747 47.826 0.00 0.00 0.00 2.52
93 94 3.220110 TCCGCCACTTCTATACTCGAAT 58.780 45.455 0.00 0.00 0.00 3.34
94 95 2.617308 CTCCGCCACTTCTATACTCGAA 59.383 50.000 0.00 0.00 0.00 3.71
95 96 2.219458 CTCCGCCACTTCTATACTCGA 58.781 52.381 0.00 0.00 0.00 4.04
96 97 1.335142 GCTCCGCCACTTCTATACTCG 60.335 57.143 0.00 0.00 0.00 4.18
97 98 2.425578 GCTCCGCCACTTCTATACTC 57.574 55.000 0.00 0.00 0.00 2.59
110 111 1.735376 TACTCGAATCCTGGCTCCGC 61.735 60.000 0.00 0.00 0.00 5.54
111 112 0.962489 ATACTCGAATCCTGGCTCCG 59.038 55.000 0.00 0.00 0.00 4.63
112 113 3.422796 TCTATACTCGAATCCTGGCTCC 58.577 50.000 0.00 0.00 0.00 4.70
113 114 3.442273 CCTCTATACTCGAATCCTGGCTC 59.558 52.174 0.00 0.00 0.00 4.70
114 115 3.426615 CCTCTATACTCGAATCCTGGCT 58.573 50.000 0.00 0.00 0.00 4.75
115 116 2.494073 CCCTCTATACTCGAATCCTGGC 59.506 54.545 0.00 0.00 0.00 4.85
116 117 3.093057 CCCCTCTATACTCGAATCCTGG 58.907 54.545 0.00 0.00 0.00 4.45
117 118 3.093057 CCCCCTCTATACTCGAATCCTG 58.907 54.545 0.00 0.00 0.00 3.86
118 119 2.557901 GCCCCCTCTATACTCGAATCCT 60.558 54.545 0.00 0.00 0.00 3.24
119 120 1.826096 GCCCCCTCTATACTCGAATCC 59.174 57.143 0.00 0.00 0.00 3.01
120 121 1.826096 GGCCCCCTCTATACTCGAATC 59.174 57.143 0.00 0.00 0.00 2.52
121 122 1.891450 CGGCCCCCTCTATACTCGAAT 60.891 57.143 0.00 0.00 0.00 3.34
122 123 0.538977 CGGCCCCCTCTATACTCGAA 60.539 60.000 0.00 0.00 0.00 3.71
123 124 1.074423 CGGCCCCCTCTATACTCGA 59.926 63.158 0.00 0.00 0.00 4.04
124 125 0.961358 CTCGGCCCCCTCTATACTCG 60.961 65.000 0.00 0.00 0.00 4.18
125 126 0.112801 ACTCGGCCCCCTCTATACTC 59.887 60.000 0.00 0.00 0.00 2.59
126 127 1.075212 GTACTCGGCCCCCTCTATACT 59.925 57.143 0.00 0.00 0.00 2.12
127 128 1.543607 GTACTCGGCCCCCTCTATAC 58.456 60.000 0.00 0.00 0.00 1.47
128 129 0.037303 CGTACTCGGCCCCCTCTATA 59.963 60.000 0.00 0.00 0.00 1.31
129 130 1.228490 CGTACTCGGCCCCCTCTAT 60.228 63.158 0.00 0.00 0.00 1.98
130 131 1.344953 TACGTACTCGGCCCCCTCTA 61.345 60.000 0.00 0.00 41.85 2.43
131 132 2.004408 ATACGTACTCGGCCCCCTCT 62.004 60.000 0.00 0.00 41.85 3.69
132 133 0.250901 TATACGTACTCGGCCCCCTC 60.251 60.000 0.00 0.00 41.85 4.30
133 134 0.407139 ATATACGTACTCGGCCCCCT 59.593 55.000 0.00 0.00 41.85 4.79
134 135 1.067354 CAATATACGTACTCGGCCCCC 60.067 57.143 0.00 0.00 41.85 5.40
135 136 1.888512 TCAATATACGTACTCGGCCCC 59.111 52.381 0.00 0.00 41.85 5.80
136 137 3.730061 CGATCAATATACGTACTCGGCCC 60.730 52.174 0.00 0.00 41.85 5.80
137 138 3.125829 TCGATCAATATACGTACTCGGCC 59.874 47.826 0.00 0.00 41.85 6.13
138 139 4.332186 TCGATCAATATACGTACTCGGC 57.668 45.455 0.00 0.00 41.85 5.54
139 140 6.773080 AGATTCGATCAATATACGTACTCGG 58.227 40.000 0.00 0.00 41.85 4.63
140 141 7.745155 ACAAGATTCGATCAATATACGTACTCG 59.255 37.037 0.00 0.61 43.34 4.18
141 142 8.951954 ACAAGATTCGATCAATATACGTACTC 57.048 34.615 0.00 0.00 0.00 2.59
142 143 9.181805 CAACAAGATTCGATCAATATACGTACT 57.818 33.333 0.00 0.00 0.00 2.73
143 144 9.177304 TCAACAAGATTCGATCAATATACGTAC 57.823 33.333 0.00 0.00 0.00 3.67
144 145 9.908152 ATCAACAAGATTCGATCAATATACGTA 57.092 29.630 0.00 0.00 31.20 3.57
145 146 8.818141 ATCAACAAGATTCGATCAATATACGT 57.182 30.769 0.00 0.00 31.20 3.57
157 158 9.638300 GCAACTAGTAATTATCAACAAGATTCG 57.362 33.333 0.00 0.00 38.19 3.34
161 162 9.944376 AGAAGCAACTAGTAATTATCAACAAGA 57.056 29.630 0.00 0.00 0.00 3.02
494 495 4.109675 CCACCTAACGGCCAGGGG 62.110 72.222 12.08 7.70 37.51 4.79
495 496 4.796495 GCCACCTAACGGCCAGGG 62.796 72.222 12.08 5.74 44.22 4.45
501 502 2.691526 TGAGTATAGTGCCACCTAACGG 59.308 50.000 0.00 0.00 0.00 4.44
502 503 4.299155 CATGAGTATAGTGCCACCTAACG 58.701 47.826 0.00 0.00 0.00 3.18
503 504 4.058817 GCATGAGTATAGTGCCACCTAAC 58.941 47.826 0.00 0.00 32.88 2.34
504 505 4.336889 GCATGAGTATAGTGCCACCTAA 57.663 45.455 0.00 0.00 32.88 2.69
506 507 2.918712 GCATGAGTATAGTGCCACCT 57.081 50.000 0.00 0.00 32.88 4.00
511 512 2.550978 ACAACGGCATGAGTATAGTGC 58.449 47.619 0.00 0.00 38.12 4.40
512 513 4.049186 GGTACAACGGCATGAGTATAGTG 58.951 47.826 0.00 0.00 0.00 2.74
513 514 3.243301 CGGTACAACGGCATGAGTATAGT 60.243 47.826 0.00 0.00 0.00 2.12
514 515 3.305964 CGGTACAACGGCATGAGTATAG 58.694 50.000 0.00 0.00 0.00 1.31
515 516 2.544277 GCGGTACAACGGCATGAGTATA 60.544 50.000 0.00 0.00 42.97 1.47
516 517 1.805120 GCGGTACAACGGCATGAGTAT 60.805 52.381 0.00 0.00 42.97 2.12
517 518 0.458889 GCGGTACAACGGCATGAGTA 60.459 55.000 0.00 0.00 42.97 2.59
518 519 1.740296 GCGGTACAACGGCATGAGT 60.740 57.895 0.00 0.00 42.97 3.41
519 520 1.421410 GAGCGGTACAACGGCATGAG 61.421 60.000 11.44 0.00 45.45 2.90
520 521 1.447140 GAGCGGTACAACGGCATGA 60.447 57.895 11.44 0.00 45.45 3.07
521 522 1.695893 CTGAGCGGTACAACGGCATG 61.696 60.000 11.44 0.00 45.45 4.06
522 523 1.447838 CTGAGCGGTACAACGGCAT 60.448 57.895 11.44 0.00 45.45 4.40
523 524 2.048597 CTGAGCGGTACAACGGCA 60.049 61.111 11.44 0.00 45.45 5.69
524 525 2.813908 CCTGAGCGGTACAACGGC 60.814 66.667 0.00 1.74 43.68 5.68
525 526 2.813908 GCCTGAGCGGTACAACGG 60.814 66.667 0.00 0.00 34.25 4.44
526 527 2.048597 TGCCTGAGCGGTACAACG 60.049 61.111 0.00 0.00 44.31 4.10
527 528 1.014564 GTCTGCCTGAGCGGTACAAC 61.015 60.000 0.00 0.00 46.23 3.32
528 529 1.292223 GTCTGCCTGAGCGGTACAA 59.708 57.895 0.00 0.00 46.23 2.41
529 530 1.468506 TTGTCTGCCTGAGCGGTACA 61.469 55.000 0.00 0.00 46.23 2.90
530 531 0.108138 ATTGTCTGCCTGAGCGGTAC 60.108 55.000 0.00 0.00 46.23 3.34
531 532 0.613260 AATTGTCTGCCTGAGCGGTA 59.387 50.000 0.00 0.00 46.23 4.02
532 533 0.250901 AAATTGTCTGCCTGAGCGGT 60.251 50.000 0.00 0.00 46.23 5.68
534 535 1.159285 TGAAATTGTCTGCCTGAGCG 58.841 50.000 0.00 0.00 44.31 5.03
535 536 2.159282 CCATGAAATTGTCTGCCTGAGC 60.159 50.000 0.00 0.00 40.48 4.26
536 537 3.128242 GTCCATGAAATTGTCTGCCTGAG 59.872 47.826 0.00 0.00 0.00 3.35
537 538 3.084039 GTCCATGAAATTGTCTGCCTGA 58.916 45.455 0.00 0.00 0.00 3.86
538 539 2.821378 TGTCCATGAAATTGTCTGCCTG 59.179 45.455 0.00 0.00 0.00 4.85
539 540 2.821969 GTGTCCATGAAATTGTCTGCCT 59.178 45.455 0.00 0.00 0.00 4.75
540 541 2.557924 TGTGTCCATGAAATTGTCTGCC 59.442 45.455 0.00 0.00 0.00 4.85
541 542 3.568538 GTGTGTCCATGAAATTGTCTGC 58.431 45.455 0.00 0.00 0.00 4.26
542 543 3.250762 ACGTGTGTCCATGAAATTGTCTG 59.749 43.478 0.00 0.00 0.00 3.51
543 544 3.476552 ACGTGTGTCCATGAAATTGTCT 58.523 40.909 0.00 0.00 0.00 3.41
544 545 3.896648 ACGTGTGTCCATGAAATTGTC 57.103 42.857 0.00 0.00 0.00 3.18
545 546 4.819630 ACTAACGTGTGTCCATGAAATTGT 59.180 37.500 0.00 0.00 0.00 2.71
546 547 5.356882 ACTAACGTGTGTCCATGAAATTG 57.643 39.130 0.00 0.00 0.00 2.32
547 548 7.681939 ATAACTAACGTGTGTCCATGAAATT 57.318 32.000 0.00 0.00 0.00 1.82
548 549 7.681939 AATAACTAACGTGTGTCCATGAAAT 57.318 32.000 0.00 0.00 0.00 2.17
549 550 7.499321 AAATAACTAACGTGTGTCCATGAAA 57.501 32.000 0.00 0.00 0.00 2.69
550 551 7.499321 AAAATAACTAACGTGTGTCCATGAA 57.501 32.000 0.00 0.00 0.00 2.57
551 552 7.308109 GGAAAAATAACTAACGTGTGTCCATGA 60.308 37.037 0.00 0.00 0.00 3.07
552 553 6.799925 GGAAAAATAACTAACGTGTGTCCATG 59.200 38.462 0.00 0.00 0.00 3.66
553 554 6.347888 CGGAAAAATAACTAACGTGTGTCCAT 60.348 38.462 0.00 0.00 0.00 3.41
554 555 5.050227 CGGAAAAATAACTAACGTGTGTCCA 60.050 40.000 0.00 0.00 0.00 4.02
555 556 5.376537 CGGAAAAATAACTAACGTGTGTCC 58.623 41.667 0.00 0.00 0.00 4.02
556 557 5.050159 ACCGGAAAAATAACTAACGTGTGTC 60.050 40.000 9.46 0.00 0.00 3.67
557 558 4.815846 ACCGGAAAAATAACTAACGTGTGT 59.184 37.500 9.46 0.00 0.00 3.72
558 559 5.347012 ACCGGAAAAATAACTAACGTGTG 57.653 39.130 9.46 0.00 0.00 3.82
559 560 5.750650 CAACCGGAAAAATAACTAACGTGT 58.249 37.500 9.46 0.00 0.00 4.49
560 561 4.613866 GCAACCGGAAAAATAACTAACGTG 59.386 41.667 9.46 0.00 0.00 4.49
561 562 4.275443 TGCAACCGGAAAAATAACTAACGT 59.725 37.500 9.46 0.00 0.00 3.99
562 563 4.785417 TGCAACCGGAAAAATAACTAACG 58.215 39.130 9.46 0.00 0.00 3.18
563 564 5.115923 CGTTGCAACCGGAAAAATAACTAAC 59.884 40.000 23.42 0.00 0.00 2.34
564 565 5.213675 CGTTGCAACCGGAAAAATAACTAA 58.786 37.500 23.42 0.00 0.00 2.24
565 566 4.785417 CGTTGCAACCGGAAAAATAACTA 58.215 39.130 23.42 0.00 0.00 2.24
566 567 3.634283 CGTTGCAACCGGAAAAATAACT 58.366 40.909 23.42 0.00 0.00 2.24
567 568 2.154198 GCGTTGCAACCGGAAAAATAAC 59.846 45.455 23.42 4.77 0.00 1.89
568 569 2.223735 TGCGTTGCAACCGGAAAAATAA 60.224 40.909 23.42 0.00 34.76 1.40
569 570 1.337071 TGCGTTGCAACCGGAAAAATA 59.663 42.857 23.42 0.00 34.76 1.40
570 571 0.103208 TGCGTTGCAACCGGAAAAAT 59.897 45.000 23.42 0.00 34.76 1.82
571 572 0.802607 GTGCGTTGCAACCGGAAAAA 60.803 50.000 23.42 0.00 41.47 1.94
572 573 1.226717 GTGCGTTGCAACCGGAAAA 60.227 52.632 23.42 0.53 41.47 2.29
573 574 2.409651 GTGCGTTGCAACCGGAAA 59.590 55.556 23.42 2.31 41.47 3.13
574 575 3.943034 CGTGCGTTGCAACCGGAA 61.943 61.111 23.42 2.27 41.47 4.30
575 576 4.893601 TCGTGCGTTGCAACCGGA 62.894 61.111 23.42 16.31 41.47 5.14
576 577 4.368808 CTCGTGCGTTGCAACCGG 62.369 66.667 23.42 11.78 41.47 5.28
578 579 2.731587 AATGCTCGTGCGTTGCAACC 62.732 55.000 23.42 16.11 45.65 3.77
579 580 0.934436 AAATGCTCGTGCGTTGCAAC 60.934 50.000 19.89 19.89 46.57 4.17
580 581 0.933973 CAAATGCTCGTGCGTTGCAA 60.934 50.000 16.88 0.00 46.57 4.08
581 582 1.370293 CAAATGCTCGTGCGTTGCA 60.370 52.632 16.88 14.15 46.57 4.08
582 583 1.370414 ACAAATGCTCGTGCGTTGC 60.370 52.632 16.88 5.71 46.57 4.17
583 584 0.316937 ACACAAATGCTCGTGCGTTG 60.317 50.000 16.88 17.84 46.57 4.10
585 586 1.194547 CTAACACAAATGCTCGTGCGT 59.805 47.619 4.84 0.99 43.34 5.24
586 587 1.194547 ACTAACACAAATGCTCGTGCG 59.805 47.619 4.84 0.00 43.34 5.34
587 588 2.969443 ACTAACACAAATGCTCGTGC 57.031 45.000 1.71 1.71 36.57 5.34
588 589 8.942669 TTTATTTACTAACACAAATGCTCGTG 57.057 30.769 0.00 0.00 39.10 4.35
589 590 9.953697 TTTTTATTTACTAACACAAATGCTCGT 57.046 25.926 0.00 0.00 0.00 4.18
592 593 9.981114 AGCTTTTTATTTACTAACACAAATGCT 57.019 25.926 0.00 0.00 0.00 3.79
602 603 9.855021 GCCTCATGAAAGCTTTTTATTTACTAA 57.145 29.630 14.05 0.00 0.00 2.24
603 604 8.466798 GGCCTCATGAAAGCTTTTTATTTACTA 58.533 33.333 14.05 0.00 0.00 1.82
604 605 7.323420 GGCCTCATGAAAGCTTTTTATTTACT 58.677 34.615 14.05 0.00 0.00 2.24
605 606 6.535150 GGGCCTCATGAAAGCTTTTTATTTAC 59.465 38.462 14.05 0.00 0.00 2.01
620 621 2.601240 TTCAAATGTGGGCCTCATGA 57.399 45.000 20.91 13.86 0.00 3.07
634 635 4.138290 TCACGGCCTTCTGTTTATTCAAA 58.862 39.130 0.00 0.00 0.00 2.69
656 657 6.127026 TGTGTTTAGTTGTTTATGGGCCTTTT 60.127 34.615 4.53 0.00 0.00 2.27
673 674 3.314553 AGGAACGTCGATGTGTGTTTAG 58.685 45.455 11.82 0.00 0.00 1.85
675 676 2.234300 AGGAACGTCGATGTGTGTTT 57.766 45.000 11.82 0.00 0.00 2.83
676 677 3.587797 ATAGGAACGTCGATGTGTGTT 57.412 42.857 11.82 0.00 0.00 3.32
678 679 4.288670 ACTATAGGAACGTCGATGTGTG 57.711 45.455 11.82 0.00 0.00 3.82
718 737 3.506810 GCCTCGATCGATGATAAAGGAG 58.493 50.000 22.40 5.73 30.10 3.69
738 757 1.126079 CGTATACATGTCGTTCCCGC 58.874 55.000 0.00 0.00 0.00 6.13
781 803 2.301870 TCTGACGGTTAACAAGATGCCT 59.698 45.455 8.10 0.00 0.00 4.75
861 890 2.722201 GGAATCGGAGGCGGTCACT 61.722 63.158 0.00 0.00 0.00 3.41
863 892 2.363795 AGGAATCGGAGGCGGTCA 60.364 61.111 0.00 0.00 0.00 4.02
913 967 0.106619 AGAAGAGGAGGCCGTCGTAT 60.107 55.000 0.00 0.00 32.77 3.06
932 992 1.134551 GCTTTGGTTTGCTTTGGTGGA 60.135 47.619 0.00 0.00 0.00 4.02
933 993 1.298602 GCTTTGGTTTGCTTTGGTGG 58.701 50.000 0.00 0.00 0.00 4.61
936 1006 3.190118 TGTTTTGCTTTGGTTTGCTTTGG 59.810 39.130 0.00 0.00 0.00 3.28
941 1011 3.870419 TGATCTGTTTTGCTTTGGTTTGC 59.130 39.130 0.00 0.00 0.00 3.68
942 1012 6.562640 CGATTGATCTGTTTTGCTTTGGTTTG 60.563 38.462 0.00 0.00 0.00 2.93
943 1013 5.463061 CGATTGATCTGTTTTGCTTTGGTTT 59.537 36.000 0.00 0.00 0.00 3.27
946 1016 4.618489 GTCGATTGATCTGTTTTGCTTTGG 59.382 41.667 0.00 0.00 0.00 3.28
948 1018 5.437289 TGTCGATTGATCTGTTTTGCTTT 57.563 34.783 0.00 0.00 0.00 3.51
959 1029 0.510359 GCGAGCCATGTCGATTGATC 59.490 55.000 9.68 0.00 42.85 2.92
960 1030 1.217585 CGCGAGCCATGTCGATTGAT 61.218 55.000 0.00 0.00 42.85 2.57
999 1073 3.896133 GCCGCCAGCATCCACATG 61.896 66.667 0.00 0.00 42.97 3.21
1656 1757 1.137479 TCGAACACCAGGACGTTCTTT 59.863 47.619 18.50 0.00 39.49 2.52
1764 1865 1.218316 GTCGAAATCCTCACCGCCT 59.782 57.895 0.00 0.00 0.00 5.52
1899 2000 1.970114 CTGGTGCTGGTTGCTGAGG 60.970 63.158 0.00 0.00 43.37 3.86
1944 2051 2.559840 GAGAAGTCGACGCCGTCA 59.440 61.111 18.40 1.54 37.05 4.35
2277 2390 0.179100 CCGTCTCCATGCCTAGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
2307 2420 0.178767 TCGGGATCAGCTTGGTCATG 59.821 55.000 0.00 0.00 0.00 3.07
2313 2426 0.250234 TGTTCCTCGGGATCAGCTTG 59.750 55.000 0.00 0.00 29.32 4.01
2520 2633 2.126071 AGGATGCCGTTCACGTCG 60.126 61.111 0.00 0.00 37.74 5.12
2765 2879 2.046292 CCTTCTCCTTCTCATCCCTCC 58.954 57.143 0.00 0.00 0.00 4.30
2803 2917 4.268687 GAGCCACTCGTTCACCTG 57.731 61.111 0.00 0.00 0.00 4.00
2925 3039 1.082169 CGTGTGGTCATTTGGTGCG 60.082 57.895 0.00 0.00 0.00 5.34
2967 3081 0.666274 TTGCACGTGCCTAGAGTTCG 60.666 55.000 35.72 0.00 41.18 3.95
3145 3259 9.028284 AGTTCATCAATTCCAACAATAACTCAT 57.972 29.630 0.00 0.00 0.00 2.90
3146 3260 8.408043 AGTTCATCAATTCCAACAATAACTCA 57.592 30.769 0.00 0.00 0.00 3.41
3147 3261 8.734386 AGAGTTCATCAATTCCAACAATAACTC 58.266 33.333 0.00 0.00 39.41 3.01
3148 3262 8.641498 AGAGTTCATCAATTCCAACAATAACT 57.359 30.769 0.00 0.00 0.00 2.24
3149 3263 9.994432 CTAGAGTTCATCAATTCCAACAATAAC 57.006 33.333 0.00 0.00 0.00 1.89
3150 3264 9.739276 ACTAGAGTTCATCAATTCCAACAATAA 57.261 29.630 0.00 0.00 0.00 1.40
3192 3306 2.639839 CCCTCCGAACCATCCAATAGAT 59.360 50.000 0.00 0.00 34.66 1.98
3193 3307 2.047061 CCCTCCGAACCATCCAATAGA 58.953 52.381 0.00 0.00 0.00 1.98
3194 3308 1.768870 ACCCTCCGAACCATCCAATAG 59.231 52.381 0.00 0.00 0.00 1.73
3196 3310 0.255890 CACCCTCCGAACCATCCAAT 59.744 55.000 0.00 0.00 0.00 3.16
3197 3311 1.131303 ACACCCTCCGAACCATCCAA 61.131 55.000 0.00 0.00 0.00 3.53
3198 3312 1.131303 AACACCCTCCGAACCATCCA 61.131 55.000 0.00 0.00 0.00 3.41
3199 3313 0.676782 CAACACCCTCCGAACCATCC 60.677 60.000 0.00 0.00 0.00 3.51
3200 3314 0.036306 ACAACACCCTCCGAACCATC 59.964 55.000 0.00 0.00 0.00 3.51
3201 3315 1.354101 TACAACACCCTCCGAACCAT 58.646 50.000 0.00 0.00 0.00 3.55
3202 3316 1.276989 GATACAACACCCTCCGAACCA 59.723 52.381 0.00 0.00 0.00 3.67
3203 3317 1.406477 GGATACAACACCCTCCGAACC 60.406 57.143 0.00 0.00 0.00 3.62
3204 3318 1.553704 AGGATACAACACCCTCCGAAC 59.446 52.381 0.00 0.00 41.41 3.95
3205 3319 1.946984 AGGATACAACACCCTCCGAA 58.053 50.000 0.00 0.00 41.41 4.30
3206 3320 2.662866 CTAGGATACAACACCCTCCGA 58.337 52.381 0.00 0.00 41.41 4.55
3207 3321 1.068741 GCTAGGATACAACACCCTCCG 59.931 57.143 0.00 0.00 41.41 4.63
3230 3344 5.072741 GCAGGTGGTTTGATATCATATGGT 58.927 41.667 6.17 0.00 0.00 3.55
3246 3360 4.724126 CTGAAAGAAGAATCCGCAGGTGG 61.724 52.174 0.00 0.00 44.82 4.61
3247 3361 2.417933 CTGAAAGAAGAATCCGCAGGTG 59.582 50.000 0.00 0.00 44.82 4.00
3248 3362 2.039084 ACTGAAAGAAGAATCCGCAGGT 59.961 45.455 0.00 0.00 44.84 4.00
3249 3363 2.417933 CACTGAAAGAAGAATCCGCAGG 59.582 50.000 0.00 0.00 45.86 4.85
3250 3364 3.329386 TCACTGAAAGAAGAATCCGCAG 58.671 45.455 0.00 0.00 37.43 5.18
3251 3365 3.006859 TCTCACTGAAAGAAGAATCCGCA 59.993 43.478 0.00 0.00 37.43 5.69
3259 3396 2.732412 TCGCCTCTCACTGAAAGAAG 57.268 50.000 0.00 0.00 37.43 2.85
3268 3405 2.086054 ACAGAAACATCGCCTCTCAC 57.914 50.000 0.00 0.00 0.00 3.51
3271 3408 5.812642 CACTATTAACAGAAACATCGCCTCT 59.187 40.000 0.00 0.00 0.00 3.69
3284 3423 9.619316 GCACTATAGACATCTCACTATTAACAG 57.381 37.037 6.78 0.00 32.57 3.16
3294 3433 5.422012 TGACAAAGGCACTATAGACATCTCA 59.578 40.000 6.78 0.00 38.49 3.27
3295 3434 5.907207 TGACAAAGGCACTATAGACATCTC 58.093 41.667 6.78 0.00 38.49 2.75
3302 3441 9.722056 GTTTTGATATTGACAAAGGCACTATAG 57.278 33.333 0.00 0.00 38.49 1.31
3310 3449 7.538575 CCTACAGGTTTTGATATTGACAAAGG 58.461 38.462 0.00 0.00 38.25 3.11
3317 3456 6.949352 ATGAGCCTACAGGTTTTGATATTG 57.051 37.500 0.00 0.00 37.57 1.90
3319 3458 6.904626 AGAATGAGCCTACAGGTTTTGATAT 58.095 36.000 0.00 0.00 37.57 1.63
3326 3465 2.428890 CGAGAGAATGAGCCTACAGGTT 59.571 50.000 0.00 0.00 37.57 3.50
3358 3497 7.704899 TGTGAAGGCATGCACGTATATATATAC 59.295 37.037 21.36 19.12 37.83 1.47
3359 3498 7.777095 TGTGAAGGCATGCACGTATATATATA 58.223 34.615 21.36 0.00 37.83 0.86
3360 3499 6.639563 TGTGAAGGCATGCACGTATATATAT 58.360 36.000 21.36 0.00 37.83 0.86
3362 3501 4.893608 TGTGAAGGCATGCACGTATATAT 58.106 39.130 21.36 0.00 37.83 0.86
3366 3509 1.739466 CTTGTGAAGGCATGCACGTAT 59.261 47.619 21.36 0.00 37.83 3.06
3385 3528 4.262207 CGGGTGCTCACATATACTCATTCT 60.262 45.833 2.21 0.00 0.00 2.40
3387 3530 3.388024 ACGGGTGCTCACATATACTCATT 59.612 43.478 2.21 0.00 0.00 2.57
3394 3537 2.434336 ACATACACGGGTGCTCACATAT 59.566 45.455 0.00 0.00 0.00 1.78
3400 3543 6.395629 ACATAATATACATACACGGGTGCTC 58.604 40.000 0.00 0.00 0.00 4.26
3402 3545 7.429636 AAACATAATATACATACACGGGTGC 57.570 36.000 0.00 0.00 0.00 5.01
3436 3579 5.446473 GCCATAACATCAAGAAACTGACGAG 60.446 44.000 0.00 0.00 0.00 4.18
3437 3580 4.391830 GCCATAACATCAAGAAACTGACGA 59.608 41.667 0.00 0.00 0.00 4.20
3438 3581 4.437390 GGCCATAACATCAAGAAACTGACG 60.437 45.833 0.00 0.00 0.00 4.35
3439 3582 4.437390 CGGCCATAACATCAAGAAACTGAC 60.437 45.833 2.24 0.00 0.00 3.51
3440 3583 3.689161 CGGCCATAACATCAAGAAACTGA 59.311 43.478 2.24 0.00 0.00 3.41
3441 3584 3.689161 TCGGCCATAACATCAAGAAACTG 59.311 43.478 2.24 0.00 0.00 3.16
3442 3585 3.950397 TCGGCCATAACATCAAGAAACT 58.050 40.909 2.24 0.00 0.00 2.66
3443 3586 4.498009 CCATCGGCCATAACATCAAGAAAC 60.498 45.833 2.24 0.00 0.00 2.78
3466 3610 2.350522 CATGTGGTGCTAGGAGAACAC 58.649 52.381 1.59 4.36 0.00 3.32
3484 3628 2.158957 CCTCCGTGTAGTTATGGTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
3485 3629 1.206132 CCTCCGTGTAGTTATGGTGCA 59.794 52.381 0.00 0.00 0.00 4.57
3486 3630 1.479323 TCCTCCGTGTAGTTATGGTGC 59.521 52.381 0.00 0.00 0.00 5.01
3487 3631 3.446161 TCTTCCTCCGTGTAGTTATGGTG 59.554 47.826 0.00 0.00 0.00 4.17
3488 3632 3.446516 GTCTTCCTCCGTGTAGTTATGGT 59.553 47.826 0.00 0.00 0.00 3.55
3489 3633 3.446161 TGTCTTCCTCCGTGTAGTTATGG 59.554 47.826 0.00 0.00 0.00 2.74
3490 3634 4.082408 TGTGTCTTCCTCCGTGTAGTTATG 60.082 45.833 0.00 0.00 0.00 1.90
3491 3635 4.084287 TGTGTCTTCCTCCGTGTAGTTAT 58.916 43.478 0.00 0.00 0.00 1.89
3492 3636 3.489355 TGTGTCTTCCTCCGTGTAGTTA 58.511 45.455 0.00 0.00 0.00 2.24
3493 3637 2.313317 TGTGTCTTCCTCCGTGTAGTT 58.687 47.619 0.00 0.00 0.00 2.24
3494 3638 1.991121 TGTGTCTTCCTCCGTGTAGT 58.009 50.000 0.00 0.00 0.00 2.73
3495 3639 2.296471 ACTTGTGTCTTCCTCCGTGTAG 59.704 50.000 0.00 0.00 0.00 2.74
3496 3640 2.035449 CACTTGTGTCTTCCTCCGTGTA 59.965 50.000 0.00 0.00 0.00 2.90
3497 3641 1.120530 ACTTGTGTCTTCCTCCGTGT 58.879 50.000 0.00 0.00 0.00 4.49
3498 3642 1.502231 CACTTGTGTCTTCCTCCGTG 58.498 55.000 0.00 0.00 0.00 4.94
3499 3643 0.393077 CCACTTGTGTCTTCCTCCGT 59.607 55.000 0.00 0.00 0.00 4.69
3500 3644 0.320771 CCCACTTGTGTCTTCCTCCG 60.321 60.000 0.00 0.00 0.00 4.63
3501 3645 0.606673 GCCCACTTGTGTCTTCCTCC 60.607 60.000 0.00 0.00 0.00 4.30
3502 3646 0.951040 CGCCCACTTGTGTCTTCCTC 60.951 60.000 0.00 0.00 0.00 3.71
3503 3647 1.071471 CGCCCACTTGTGTCTTCCT 59.929 57.895 0.00 0.00 0.00 3.36
3504 3648 2.617274 GCGCCCACTTGTGTCTTCC 61.617 63.158 0.00 0.00 0.00 3.46
3505 3649 1.166531 AAGCGCCCACTTGTGTCTTC 61.167 55.000 2.29 0.00 0.00 2.87
3506 3650 1.152963 AAGCGCCCACTTGTGTCTT 60.153 52.632 2.29 0.00 0.00 3.01
3507 3651 1.598130 GAAGCGCCCACTTGTGTCT 60.598 57.895 2.29 0.00 0.00 3.41
3508 3652 1.845809 CTGAAGCGCCCACTTGTGTC 61.846 60.000 2.29 0.00 0.00 3.67
3509 3653 1.893808 CTGAAGCGCCCACTTGTGT 60.894 57.895 2.29 0.00 0.00 3.72
3510 3654 2.949106 CTGAAGCGCCCACTTGTG 59.051 61.111 2.29 0.00 0.00 3.33
3511 3655 2.980233 GCTGAAGCGCCCACTTGT 60.980 61.111 2.29 0.00 0.00 3.16
3512 3656 3.741476 GGCTGAAGCGCCCACTTG 61.741 66.667 2.29 0.00 44.41 3.16
3519 3663 0.462759 ATAAGAGGTGGCTGAAGCGC 60.463 55.000 0.00 0.00 43.26 5.92
3520 3664 2.029838 AATAAGAGGTGGCTGAAGCG 57.970 50.000 0.00 0.00 43.26 4.68
3521 3665 4.261363 GCATAAATAAGAGGTGGCTGAAGC 60.261 45.833 0.00 0.00 41.14 3.86
3522 3666 4.883585 TGCATAAATAAGAGGTGGCTGAAG 59.116 41.667 0.00 0.00 0.00 3.02
3523 3667 4.854173 TGCATAAATAAGAGGTGGCTGAA 58.146 39.130 0.00 0.00 0.00 3.02
3524 3668 4.164030 TCTGCATAAATAAGAGGTGGCTGA 59.836 41.667 0.00 0.00 0.00 4.26
3525 3669 4.454678 TCTGCATAAATAAGAGGTGGCTG 58.545 43.478 0.00 0.00 0.00 4.85
3526 3670 4.778213 TCTGCATAAATAAGAGGTGGCT 57.222 40.909 0.00 0.00 0.00 4.75
3527 3671 8.970859 ATATATCTGCATAAATAAGAGGTGGC 57.029 34.615 0.00 0.00 0.00 5.01
3551 3695 9.365906 TGTGCATTGATTTTCAAGGGTATATAT 57.634 29.630 4.35 0.00 40.05 0.86
3552 3696 8.759481 TGTGCATTGATTTTCAAGGGTATATA 57.241 30.769 4.35 0.00 40.05 0.86
3553 3697 7.658525 TGTGCATTGATTTTCAAGGGTATAT 57.341 32.000 4.35 0.00 40.05 0.86
3554 3698 7.341512 TGATGTGCATTGATTTTCAAGGGTATA 59.658 33.333 4.35 0.00 40.05 1.47
3555 3699 5.999205 TGTGCATTGATTTTCAAGGGTAT 57.001 34.783 4.35 0.00 40.05 2.73
3556 3700 5.479724 TGATGTGCATTGATTTTCAAGGGTA 59.520 36.000 4.35 0.00 40.05 3.69
3557 3701 4.283978 TGATGTGCATTGATTTTCAAGGGT 59.716 37.500 4.35 0.00 40.05 4.34
3558 3702 4.823157 TGATGTGCATTGATTTTCAAGGG 58.177 39.130 4.35 0.00 40.05 3.95
3559 3703 8.547894 CAATATGATGTGCATTGATTTTCAAGG 58.452 33.333 0.00 0.00 40.05 3.61
3560 3704 9.093970 ACAATATGATGTGCATTGATTTTCAAG 57.906 29.630 1.18 0.00 38.44 3.02
3561 3705 9.089601 GACAATATGATGTGCATTGATTTTCAA 57.910 29.630 1.18 0.00 38.44 2.69
3562 3706 8.251721 TGACAATATGATGTGCATTGATTTTCA 58.748 29.630 1.18 0.00 38.44 2.69
3563 3707 8.637281 TGACAATATGATGTGCATTGATTTTC 57.363 30.769 1.18 0.00 38.44 2.29
3564 3708 9.040939 CATGACAATATGATGTGCATTGATTTT 57.959 29.630 1.18 0.00 38.44 1.82
3565 3709 7.655732 CCATGACAATATGATGTGCATTGATTT 59.344 33.333 0.00 0.00 38.44 2.17
3566 3710 7.151976 CCATGACAATATGATGTGCATTGATT 58.848 34.615 0.00 0.00 38.44 2.57
3567 3711 6.295067 CCCATGACAATATGATGTGCATTGAT 60.295 38.462 0.00 0.00 38.44 2.57
3568 3712 5.010213 CCCATGACAATATGATGTGCATTGA 59.990 40.000 0.00 0.00 38.44 2.57
3569 3713 5.221362 ACCCATGACAATATGATGTGCATTG 60.221 40.000 0.00 0.00 38.44 2.82
3570 3714 4.897076 ACCCATGACAATATGATGTGCATT 59.103 37.500 0.00 0.00 38.44 3.56
3571 3715 4.476297 ACCCATGACAATATGATGTGCAT 58.524 39.130 0.00 0.00 41.08 3.96
3572 3716 3.900971 ACCCATGACAATATGATGTGCA 58.099 40.909 0.00 0.00 32.57 4.57
3573 3717 4.581824 AGAACCCATGACAATATGATGTGC 59.418 41.667 0.00 0.00 32.57 4.57
3574 3718 6.500910 CAAGAACCCATGACAATATGATGTG 58.499 40.000 0.00 0.00 32.57 3.21
3575 3719 5.068198 GCAAGAACCCATGACAATATGATGT 59.932 40.000 0.00 0.00 35.90 3.06
3576 3720 5.301045 AGCAAGAACCCATGACAATATGATG 59.699 40.000 0.00 0.00 0.00 3.07
3577 3721 5.452255 AGCAAGAACCCATGACAATATGAT 58.548 37.500 0.00 0.00 0.00 2.45
3578 3722 4.858850 AGCAAGAACCCATGACAATATGA 58.141 39.130 0.00 0.00 0.00 2.15
3579 3723 4.641541 TGAGCAAGAACCCATGACAATATG 59.358 41.667 0.00 0.00 0.00 1.78
3580 3724 4.641989 GTGAGCAAGAACCCATGACAATAT 59.358 41.667 0.00 0.00 0.00 1.28
3581 3725 4.009675 GTGAGCAAGAACCCATGACAATA 58.990 43.478 0.00 0.00 0.00 1.90
3582 3726 2.821969 GTGAGCAAGAACCCATGACAAT 59.178 45.455 0.00 0.00 0.00 2.71
3583 3727 2.229792 GTGAGCAAGAACCCATGACAA 58.770 47.619 0.00 0.00 0.00 3.18
3584 3728 1.142667 TGTGAGCAAGAACCCATGACA 59.857 47.619 0.00 0.00 0.00 3.58
3585 3729 1.537202 GTGTGAGCAAGAACCCATGAC 59.463 52.381 0.00 0.00 0.00 3.06
3586 3730 1.142667 TGTGTGAGCAAGAACCCATGA 59.857 47.619 0.00 0.00 0.00 3.07
3587 3731 1.608055 TGTGTGAGCAAGAACCCATG 58.392 50.000 0.00 0.00 0.00 3.66
3588 3732 2.592102 ATGTGTGAGCAAGAACCCAT 57.408 45.000 0.00 0.00 0.00 4.00
3589 3733 2.363306 AATGTGTGAGCAAGAACCCA 57.637 45.000 0.00 0.00 0.00 4.51
3590 3734 3.366374 GCTAAATGTGTGAGCAAGAACCC 60.366 47.826 0.00 0.00 36.20 4.11
3591 3735 3.366374 GGCTAAATGTGTGAGCAAGAACC 60.366 47.826 0.00 0.00 37.98 3.62
3592 3736 3.253188 TGGCTAAATGTGTGAGCAAGAAC 59.747 43.478 0.00 0.00 37.98 3.01
3593 3737 3.485394 TGGCTAAATGTGTGAGCAAGAA 58.515 40.909 0.00 0.00 37.98 2.52
3594 3738 3.076621 CTGGCTAAATGTGTGAGCAAGA 58.923 45.455 0.00 0.00 39.27 3.02
3595 3739 3.076621 TCTGGCTAAATGTGTGAGCAAG 58.923 45.455 0.00 0.00 38.42 4.01
3596 3740 3.076621 CTCTGGCTAAATGTGTGAGCAA 58.923 45.455 0.00 0.00 37.98 3.91
3597 3741 2.616256 CCTCTGGCTAAATGTGTGAGCA 60.616 50.000 0.00 0.00 37.98 4.26
3598 3742 2.012673 CCTCTGGCTAAATGTGTGAGC 58.987 52.381 0.00 0.00 35.39 4.26
3599 3743 2.012673 GCCTCTGGCTAAATGTGTGAG 58.987 52.381 0.73 0.00 46.69 3.51
3600 3744 2.113860 GCCTCTGGCTAAATGTGTGA 57.886 50.000 0.73 0.00 46.69 3.58
3613 3757 2.725203 TTTTCCGTGGTCCGCCTCTG 62.725 60.000 0.00 0.00 35.27 3.35
3614 3758 2.047213 TTTTTCCGTGGTCCGCCTCT 62.047 55.000 0.00 0.00 35.27 3.69
3615 3759 1.598685 TTTTTCCGTGGTCCGCCTC 60.599 57.895 0.00 0.00 35.27 4.70
3616 3760 2.511900 TTTTTCCGTGGTCCGCCT 59.488 55.556 0.00 0.00 35.27 5.52
3631 3775 4.583073 AGACTTCGCCACACCTTAATTTTT 59.417 37.500 0.00 0.00 0.00 1.94
3632 3776 4.142038 AGACTTCGCCACACCTTAATTTT 58.858 39.130 0.00 0.00 0.00 1.82
3633 3777 3.751518 AGACTTCGCCACACCTTAATTT 58.248 40.909 0.00 0.00 0.00 1.82
3634 3778 3.244422 TGAGACTTCGCCACACCTTAATT 60.244 43.478 0.00 0.00 0.00 1.40
3635 3779 2.301870 TGAGACTTCGCCACACCTTAAT 59.698 45.455 0.00 0.00 0.00 1.40
3636 3780 1.689813 TGAGACTTCGCCACACCTTAA 59.310 47.619 0.00 0.00 0.00 1.85
3637 3781 1.000506 GTGAGACTTCGCCACACCTTA 59.999 52.381 0.00 0.00 0.00 2.69
3638 3782 0.249911 GTGAGACTTCGCCACACCTT 60.250 55.000 0.00 0.00 0.00 3.50
3639 3783 1.115930 AGTGAGACTTCGCCACACCT 61.116 55.000 0.00 0.00 34.29 4.00
3640 3784 0.601558 TAGTGAGACTTCGCCACACC 59.398 55.000 0.00 0.00 34.29 4.16
3641 3785 2.030185 TCTTAGTGAGACTTCGCCACAC 60.030 50.000 0.00 0.00 34.29 3.82
3642 3786 2.235891 TCTTAGTGAGACTTCGCCACA 58.764 47.619 0.00 0.00 34.29 4.17
3643 3787 3.512033 ATCTTAGTGAGACTTCGCCAC 57.488 47.619 0.00 0.00 37.17 5.01
3644 3788 4.537135 AAATCTTAGTGAGACTTCGCCA 57.463 40.909 0.00 0.00 37.17 5.69
3645 3789 5.864628 AAAAATCTTAGTGAGACTTCGCC 57.135 39.130 0.00 0.00 37.17 5.54
3668 3812 9.982291 GTGTATTAACTCTTTGATTCGCATTAA 57.018 29.630 0.00 0.00 0.00 1.40
3669 3813 9.157104 TGTGTATTAACTCTTTGATTCGCATTA 57.843 29.630 0.00 0.00 0.00 1.90
3670 3814 7.962918 GTGTGTATTAACTCTTTGATTCGCATT 59.037 33.333 0.00 0.00 0.00 3.56
3671 3815 7.334421 AGTGTGTATTAACTCTTTGATTCGCAT 59.666 33.333 0.00 0.00 0.00 4.73
3672 3816 6.649141 AGTGTGTATTAACTCTTTGATTCGCA 59.351 34.615 0.00 0.00 0.00 5.10
3673 3817 7.061752 AGTGTGTATTAACTCTTTGATTCGC 57.938 36.000 0.00 0.00 0.00 4.70
3674 3818 8.311822 CGTAGTGTGTATTAACTCTTTGATTCG 58.688 37.037 0.00 0.00 0.00 3.34
3675 3819 9.350357 TCGTAGTGTGTATTAACTCTTTGATTC 57.650 33.333 0.00 0.00 0.00 2.52
3676 3820 9.701098 TTCGTAGTGTGTATTAACTCTTTGATT 57.299 29.630 0.00 0.00 0.00 2.57
3677 3821 9.136952 GTTCGTAGTGTGTATTAACTCTTTGAT 57.863 33.333 0.00 0.00 0.00 2.57
3678 3822 7.324375 CGTTCGTAGTGTGTATTAACTCTTTGA 59.676 37.037 0.00 0.00 0.00 2.69
3679 3823 7.324375 TCGTTCGTAGTGTGTATTAACTCTTTG 59.676 37.037 0.00 0.00 0.00 2.77
3680 3824 7.362662 TCGTTCGTAGTGTGTATTAACTCTTT 58.637 34.615 0.00 0.00 0.00 2.52
3681 3825 6.902341 TCGTTCGTAGTGTGTATTAACTCTT 58.098 36.000 0.00 0.00 0.00 2.85
3682 3826 6.486253 TCGTTCGTAGTGTGTATTAACTCT 57.514 37.500 0.00 0.00 0.00 3.24
3683 3827 7.731556 ATTCGTTCGTAGTGTGTATTAACTC 57.268 36.000 0.00 0.00 0.00 3.01
3684 3828 9.065871 GTTATTCGTTCGTAGTGTGTATTAACT 57.934 33.333 0.00 0.00 0.00 2.24
3685 3829 8.313931 GGTTATTCGTTCGTAGTGTGTATTAAC 58.686 37.037 0.00 0.00 0.00 2.01
3686 3830 8.026026 TGGTTATTCGTTCGTAGTGTGTATTAA 58.974 33.333 0.00 0.00 0.00 1.40
3687 3831 7.534282 TGGTTATTCGTTCGTAGTGTGTATTA 58.466 34.615 0.00 0.00 0.00 0.98
3727 3871 6.662755 TGTTTTCCTATTGAGGCATGTCTAT 58.337 36.000 0.00 0.00 43.40 1.98
3736 3880 7.232737 AGGTTTTAGGTTGTTTTCCTATTGAGG 59.767 37.037 0.00 0.00 45.35 3.86
3802 6649 7.531857 TTGAACAGCCTTAAATTCAACCATA 57.468 32.000 0.00 0.00 36.42 2.74
3856 6713 7.526918 TCCAAAGAAAAGAGGAAGAGGTAATT 58.473 34.615 0.00 0.00 0.00 1.40
3957 6814 2.189594 CATGGACAGAAAGGCACTGA 57.810 50.000 11.91 0.00 40.86 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.