Multiple sequence alignment - TraesCS7A01G430200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G430200 chr7A 100.000 2603 0 0 1 2603 624839737 624842339 0.000000e+00 4807
1 TraesCS7A01G430200 chr7A 88.819 1118 78 21 685 1778 624887029 624888123 0.000000e+00 1328
2 TraesCS7A01G430200 chr7A 82.060 864 92 33 957 1778 624957665 624958507 0.000000e+00 678
3 TraesCS7A01G430200 chr7A 91.761 352 15 10 205 543 245939014 245939364 6.520000e-131 477
4 TraesCS7A01G430200 chr7A 90.588 340 11 4 205 543 676516545 676516226 5.150000e-117 431
5 TraesCS7A01G430200 chr7A 83.258 442 63 9 2023 2461 677940950 677941383 1.880000e-106 396
6 TraesCS7A01G430200 chr7A 80.682 352 58 7 1941 2285 116546799 116546451 5.520000e-67 265
7 TraesCS7A01G430200 chr7A 87.245 196 7 4 1 193 624884785 624884965 9.440000e-50 207
8 TraesCS7A01G430200 chr7A 91.200 125 4 5 542 665 624884997 624885115 2.070000e-36 163
9 TraesCS7A01G430200 chr7B 89.223 1763 143 25 650 2384 586066961 586068704 0.000000e+00 2159
10 TraesCS7A01G430200 chr7B 88.358 1151 85 23 650 1778 585944208 585945331 0.000000e+00 1338
11 TraesCS7A01G430200 chr7B 89.552 737 57 11 826 1549 585991623 585992352 0.000000e+00 917
12 TraesCS7A01G430200 chr7B 83.172 826 86 32 987 1780 586240663 586241467 0.000000e+00 706
13 TraesCS7A01G430200 chr7B 82.054 886 88 36 947 1780 586116418 586117284 0.000000e+00 689
14 TraesCS7A01G430200 chr7B 80.666 631 110 11 1836 2460 586098082 586098706 1.810000e-131 479
15 TraesCS7A01G430200 chr7B 80.727 550 78 17 1113 1643 586128947 586129487 1.120000e-108 403
16 TraesCS7A01G430200 chr7B 88.584 219 22 1 2385 2603 586087477 586087692 1.990000e-66 263
17 TraesCS7A01G430200 chr7B 86.667 240 22 6 685 918 585912251 585912486 9.240000e-65 257
18 TraesCS7A01G430200 chr7B 87.755 196 16 7 1 188 585964085 585964280 3.370000e-54 222
19 TraesCS7A01G430200 chr7B 86.935 199 11 6 1 190 586052413 586052605 2.620000e-50 209
20 TraesCS7A01G430200 chr7B 90.506 158 12 2 668 825 585986998 585987152 3.400000e-49 206
21 TraesCS7A01G430200 chr7B 86.047 129 9 5 64 190 585943953 585944074 2.100000e-26 130
22 TraesCS7A01G430200 chr7B 84.559 136 11 6 1 126 586066658 586066793 2.720000e-25 126
23 TraesCS7A01G430200 chr7B 97.674 43 1 0 556 598 586066856 586066898 9.990000e-10 75
24 TraesCS7A01G430200 chr7D 91.139 1027 55 10 640 1650 542885664 542886670 0.000000e+00 1360
25 TraesCS7A01G430200 chr7D 90.665 857 56 10 935 1778 542825918 542826763 0.000000e+00 1118
26 TraesCS7A01G430200 chr7D 81.570 1134 110 46 702 1777 542957324 542958416 0.000000e+00 845
27 TraesCS7A01G430200 chr7D 80.261 613 109 9 1868 2474 19589201 19588595 3.950000e-123 451
28 TraesCS7A01G430200 chr7D 85.924 341 23 13 556 895 542825070 542825386 8.920000e-90 340
29 TraesCS7A01G430200 chr7D 85.507 276 25 5 654 918 542219849 542220120 9.180000e-70 274
30 TraesCS7A01G430200 chr7D 88.535 157 10 3 38 190 542824889 542825041 1.590000e-42 183
31 TraesCS7A01G430200 chr7D 86.413 184 6 6 13 190 542885412 542885582 1.590000e-42 183
32 TraesCS7A01G430200 chr7D 94.382 89 5 0 49 137 542132288 542132376 1.260000e-28 137
33 TraesCS7A01G430200 chr6D 95.029 342 14 2 205 543 8539297 8539638 3.810000e-148 534
34 TraesCS7A01G430200 chr6D 79.612 618 109 13 1852 2461 453323476 453324084 6.660000e-116 427
35 TraesCS7A01G430200 chr1D 94.721 341 16 2 205 543 441583347 441583007 1.770000e-146 529
36 TraesCS7A01G430200 chr1D 79.344 518 85 17 1960 2470 139138515 139138013 6.900000e-91 344
37 TraesCS7A01G430200 chr5A 79.083 698 128 16 1785 2470 533952002 533951311 5.070000e-127 464
38 TraesCS7A01G430200 chr5A 89.443 341 14 4 205 544 624208737 624209056 6.700000e-111 411
39 TraesCS7A01G430200 chr4D 79.604 505 90 7 1958 2456 313930552 313931049 1.480000e-92 350
40 TraesCS7A01G430200 chr4D 78.723 423 75 12 1798 2208 501328454 501328873 4.270000e-68 268
41 TraesCS7A01G430200 chr3D 79.894 378 69 5 1850 2221 387361799 387362175 1.190000e-68 270
42 TraesCS7A01G430200 chr3D 75.413 606 117 24 1787 2383 364523661 364524243 5.520000e-67 265
43 TraesCS7A01G430200 chr3D 85.507 138 20 0 2324 2461 492480015 492480152 7.510000e-31 145
44 TraesCS7A01G430200 chr1A 91.710 193 13 3 201 391 585290853 585291044 5.520000e-67 265
45 TraesCS7A01G430200 chr1A 92.188 128 10 0 416 543 585303748 585303875 5.720000e-42 182
46 TraesCS7A01G430200 chr2D 84.173 139 22 0 2323 2461 264662875 264663013 4.520000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G430200 chr7A 624839737 624842339 2602 False 4807.000000 4807 100.000000 1 2603 1 chr7A.!!$F2 2602
1 TraesCS7A01G430200 chr7A 624957665 624958507 842 False 678.000000 678 82.060000 957 1778 1 chr7A.!!$F3 821
2 TraesCS7A01G430200 chr7A 624884785 624888123 3338 False 566.000000 1328 89.088000 1 1778 3 chr7A.!!$F5 1777
3 TraesCS7A01G430200 chr7B 585991623 585992352 729 False 917.000000 917 89.552000 826 1549 1 chr7B.!!$F4 723
4 TraesCS7A01G430200 chr7B 586066658 586068704 2046 False 786.666667 2159 90.485333 1 2384 3 chr7B.!!$F12 2383
5 TraesCS7A01G430200 chr7B 585943953 585945331 1378 False 734.000000 1338 87.202500 64 1778 2 chr7B.!!$F11 1714
6 TraesCS7A01G430200 chr7B 586240663 586241467 804 False 706.000000 706 83.172000 987 1780 1 chr7B.!!$F10 793
7 TraesCS7A01G430200 chr7B 586116418 586117284 866 False 689.000000 689 82.054000 947 1780 1 chr7B.!!$F8 833
8 TraesCS7A01G430200 chr7B 586098082 586098706 624 False 479.000000 479 80.666000 1836 2460 1 chr7B.!!$F7 624
9 TraesCS7A01G430200 chr7B 586128947 586129487 540 False 403.000000 403 80.727000 1113 1643 1 chr7B.!!$F9 530
10 TraesCS7A01G430200 chr7D 542957324 542958416 1092 False 845.000000 845 81.570000 702 1777 1 chr7D.!!$F3 1075
11 TraesCS7A01G430200 chr7D 542885412 542886670 1258 False 771.500000 1360 88.776000 13 1650 2 chr7D.!!$F5 1637
12 TraesCS7A01G430200 chr7D 542824889 542826763 1874 False 547.000000 1118 88.374667 38 1778 3 chr7D.!!$F4 1740
13 TraesCS7A01G430200 chr7D 19588595 19589201 606 True 451.000000 451 80.261000 1868 2474 1 chr7D.!!$R1 606
14 TraesCS7A01G430200 chr6D 453323476 453324084 608 False 427.000000 427 79.612000 1852 2461 1 chr6D.!!$F2 609
15 TraesCS7A01G430200 chr1D 139138013 139138515 502 True 344.000000 344 79.344000 1960 2470 1 chr1D.!!$R1 510
16 TraesCS7A01G430200 chr5A 533951311 533952002 691 True 464.000000 464 79.083000 1785 2470 1 chr5A.!!$R1 685
17 TraesCS7A01G430200 chr3D 364523661 364524243 582 False 265.000000 265 75.413000 1787 2383 1 chr3D.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 105 0.033366 TGGTCGACATGCCGATATGG 59.967 55.0 18.91 0.0 40.91 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 4256 0.03582 GACGTGGGCTAATTGGGACA 60.036 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 105 0.033366 TGGTCGACATGCCGATATGG 59.967 55.000 18.91 0.00 40.91 2.74
175 190 1.258982 GCGACTGTACATAGCACATGC 59.741 52.381 0.00 0.00 42.49 4.06
193 213 0.594284 GCCGTCTAACGCGCTATTCT 60.594 55.000 5.73 0.00 40.91 2.40
195 215 2.305291 CCGTCTAACGCGCTATTCTAC 58.695 52.381 5.73 1.28 40.91 2.59
196 216 2.286595 CCGTCTAACGCGCTATTCTACA 60.287 50.000 5.73 0.00 40.91 2.74
197 217 3.552541 CGTCTAACGCGCTATTCTACAT 58.447 45.455 5.73 0.00 33.65 2.29
198 218 3.358115 CGTCTAACGCGCTATTCTACATG 59.642 47.826 5.73 0.00 33.65 3.21
200 220 5.446709 GTCTAACGCGCTATTCTACATGTA 58.553 41.667 5.73 5.25 0.00 2.29
201 221 5.339085 GTCTAACGCGCTATTCTACATGTAC 59.661 44.000 5.73 0.00 0.00 2.90
202 222 2.647337 ACGCGCTATTCTACATGTACG 58.353 47.619 5.73 4.24 0.00 3.67
203 223 2.032550 ACGCGCTATTCTACATGTACGT 59.967 45.455 5.73 4.82 0.00 3.57
204 224 2.400735 CGCGCTATTCTACATGTACGTG 59.599 50.000 13.64 13.64 0.00 4.49
205 225 2.724690 GCGCTATTCTACATGTACGTGG 59.275 50.000 19.05 2.70 0.00 4.94
206 226 2.724690 CGCTATTCTACATGTACGTGGC 59.275 50.000 19.05 9.59 0.00 5.01
208 228 2.218953 ATTCTACATGTACGTGGCCG 57.781 50.000 19.05 7.04 40.83 6.13
211 231 3.374012 TACATGTACGTGGCCGGCC 62.374 63.158 39.40 39.40 38.78 6.13
215 235 4.217159 GTACGTGGCCGGCCCTAG 62.217 72.222 41.75 32.12 38.78 3.02
219 239 4.506255 GTGGCCGGCCCTAGCAAT 62.506 66.667 41.75 0.00 42.56 3.56
220 240 3.738481 TGGCCGGCCCTAGCAATT 61.738 61.111 41.75 0.00 42.56 2.32
221 241 2.907407 GGCCGGCCCTAGCAATTC 60.907 66.667 36.64 5.01 42.56 2.17
222 242 2.193248 GCCGGCCCTAGCAATTCT 59.807 61.111 18.11 0.00 42.56 2.40
223 243 2.189499 GCCGGCCCTAGCAATTCTG 61.189 63.158 18.11 0.00 42.56 3.02
224 244 1.526887 CCGGCCCTAGCAATTCTGA 59.473 57.895 0.00 0.00 42.56 3.27
225 245 0.533755 CCGGCCCTAGCAATTCTGAG 60.534 60.000 0.00 0.00 42.56 3.35
226 246 0.533755 CGGCCCTAGCAATTCTGAGG 60.534 60.000 0.00 0.00 42.56 3.86
227 247 0.821301 GGCCCTAGCAATTCTGAGGC 60.821 60.000 0.00 0.00 42.56 4.70
228 248 0.821301 GCCCTAGCAATTCTGAGGCC 60.821 60.000 0.00 0.00 37.97 5.19
229 249 0.179006 CCCTAGCAATTCTGAGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
230 250 0.842635 CCTAGCAATTCTGAGGCCCT 59.157 55.000 0.00 0.00 0.00 5.19
231 251 2.050144 CCTAGCAATTCTGAGGCCCTA 58.950 52.381 0.00 0.00 0.00 3.53
232 252 2.038295 CCTAGCAATTCTGAGGCCCTAG 59.962 54.545 0.00 0.00 0.00 3.02
233 253 1.589414 AGCAATTCTGAGGCCCTAGT 58.411 50.000 0.00 0.00 0.00 2.57
234 254 1.211457 AGCAATTCTGAGGCCCTAGTG 59.789 52.381 0.00 0.00 0.00 2.74
235 255 1.673168 CAATTCTGAGGCCCTAGTGC 58.327 55.000 0.00 0.00 0.00 4.40
236 256 1.065199 CAATTCTGAGGCCCTAGTGCA 60.065 52.381 0.00 0.00 0.00 4.57
237 257 1.289160 ATTCTGAGGCCCTAGTGCAA 58.711 50.000 0.00 0.00 0.00 4.08
238 258 0.615331 TTCTGAGGCCCTAGTGCAAG 59.385 55.000 0.00 0.00 0.00 4.01
239 259 0.545309 TCTGAGGCCCTAGTGCAAGT 60.545 55.000 0.00 0.00 0.00 3.16
240 260 0.392193 CTGAGGCCCTAGTGCAAGTG 60.392 60.000 0.00 0.00 0.00 3.16
241 261 1.127567 TGAGGCCCTAGTGCAAGTGT 61.128 55.000 0.00 0.00 0.00 3.55
242 262 0.674895 GAGGCCCTAGTGCAAGTGTG 60.675 60.000 0.00 0.00 0.00 3.82
254 274 2.270275 CAAGTGTGCAACCGAACAAA 57.730 45.000 0.00 0.00 34.36 2.83
255 275 2.808244 CAAGTGTGCAACCGAACAAAT 58.192 42.857 0.00 0.00 34.36 2.32
256 276 2.774439 AGTGTGCAACCGAACAAATC 57.226 45.000 0.00 0.00 34.36 2.17
257 277 1.336755 AGTGTGCAACCGAACAAATCC 59.663 47.619 0.00 0.00 34.36 3.01
258 278 1.066303 GTGTGCAACCGAACAAATCCA 59.934 47.619 0.00 0.00 34.36 3.41
259 279 1.959985 TGTGCAACCGAACAAATCCAT 59.040 42.857 0.00 0.00 34.36 3.41
260 280 2.363680 TGTGCAACCGAACAAATCCATT 59.636 40.909 0.00 0.00 34.36 3.16
261 281 3.181471 TGTGCAACCGAACAAATCCATTT 60.181 39.130 0.00 0.00 34.36 2.32
262 282 5.266913 TGTGCAACCGAACAAATCCATTTG 61.267 41.667 9.98 9.98 44.21 2.32
263 283 7.407556 TGTGCAACCGAACAAATCCATTTGA 62.408 40.000 17.12 0.00 42.55 2.69
264 284 8.626176 TGTGCAACCGAACAAATCCATTTGAT 62.626 38.462 17.12 6.75 42.55 2.57
265 285 9.344116 TGTGCAACCGAACAAATCCATTTGATA 62.344 37.037 17.12 0.00 42.55 2.15
287 307 9.231297 TGATAACAAAGAGAAAGATTAAGGTGG 57.769 33.333 0.00 0.00 0.00 4.61
288 308 9.232473 GATAACAAAGAGAAAGATTAAGGTGGT 57.768 33.333 0.00 0.00 0.00 4.16
289 309 6.884280 ACAAAGAGAAAGATTAAGGTGGTG 57.116 37.500 0.00 0.00 0.00 4.17
290 310 6.601332 ACAAAGAGAAAGATTAAGGTGGTGA 58.399 36.000 0.00 0.00 0.00 4.02
291 311 7.234355 ACAAAGAGAAAGATTAAGGTGGTGAT 58.766 34.615 0.00 0.00 0.00 3.06
292 312 8.383175 ACAAAGAGAAAGATTAAGGTGGTGATA 58.617 33.333 0.00 0.00 0.00 2.15
293 313 8.669243 CAAAGAGAAAGATTAAGGTGGTGATAC 58.331 37.037 0.00 0.00 0.00 2.24
294 314 7.496346 AGAGAAAGATTAAGGTGGTGATACA 57.504 36.000 0.00 0.00 0.00 2.29
295 315 7.331791 AGAGAAAGATTAAGGTGGTGATACAC 58.668 38.462 0.00 0.00 40.60 2.90
326 346 8.647143 AAAATCATTAAATTAGCATCGTTGGG 57.353 30.769 0.00 0.00 0.00 4.12
327 347 6.959639 ATCATTAAATTAGCATCGTTGGGT 57.040 33.333 0.00 0.00 0.00 4.51
328 348 6.371809 TCATTAAATTAGCATCGTTGGGTC 57.628 37.500 0.00 0.00 0.00 4.46
329 349 5.298276 TCATTAAATTAGCATCGTTGGGTCC 59.702 40.000 0.00 0.00 0.00 4.46
330 350 2.052782 AATTAGCATCGTTGGGTCCC 57.947 50.000 0.00 0.00 0.00 4.46
331 351 1.213296 ATTAGCATCGTTGGGTCCCT 58.787 50.000 10.00 0.00 0.00 4.20
332 352 0.251916 TTAGCATCGTTGGGTCCCTG 59.748 55.000 10.00 0.00 0.00 4.45
333 353 2.252072 TAGCATCGTTGGGTCCCTGC 62.252 60.000 10.00 10.26 0.00 4.85
334 354 2.438434 CATCGTTGGGTCCCTGCC 60.438 66.667 10.00 0.00 0.00 4.85
335 355 2.610859 ATCGTTGGGTCCCTGCCT 60.611 61.111 10.00 0.00 0.00 4.75
336 356 2.231380 ATCGTTGGGTCCCTGCCTT 61.231 57.895 10.00 0.00 0.00 4.35
337 357 2.198304 ATCGTTGGGTCCCTGCCTTC 62.198 60.000 10.00 0.00 0.00 3.46
338 358 2.895424 CGTTGGGTCCCTGCCTTCT 61.895 63.158 10.00 0.00 0.00 2.85
339 359 1.460699 GTTGGGTCCCTGCCTTCTT 59.539 57.895 10.00 0.00 0.00 2.52
340 360 0.178961 GTTGGGTCCCTGCCTTCTTT 60.179 55.000 10.00 0.00 0.00 2.52
341 361 0.178964 TTGGGTCCCTGCCTTCTTTG 60.179 55.000 10.00 0.00 0.00 2.77
342 362 1.065410 TGGGTCCCTGCCTTCTTTGA 61.065 55.000 10.00 0.00 0.00 2.69
343 363 0.322906 GGGTCCCTGCCTTCTTTGAG 60.323 60.000 0.00 0.00 0.00 3.02
344 364 0.693049 GGTCCCTGCCTTCTTTGAGA 59.307 55.000 0.00 0.00 0.00 3.27
345 365 1.611936 GGTCCCTGCCTTCTTTGAGAC 60.612 57.143 0.00 0.00 0.00 3.36
346 366 1.349357 GTCCCTGCCTTCTTTGAGACT 59.651 52.381 0.00 0.00 0.00 3.24
347 367 2.057922 TCCCTGCCTTCTTTGAGACTT 58.942 47.619 0.00 0.00 0.00 3.01
348 368 2.157738 CCCTGCCTTCTTTGAGACTTG 58.842 52.381 0.00 0.00 0.00 3.16
349 369 2.487986 CCCTGCCTTCTTTGAGACTTGT 60.488 50.000 0.00 0.00 0.00 3.16
350 370 2.551459 CCTGCCTTCTTTGAGACTTGTG 59.449 50.000 0.00 0.00 0.00 3.33
351 371 2.551459 CTGCCTTCTTTGAGACTTGTGG 59.449 50.000 0.00 0.00 0.00 4.17
352 372 2.092429 TGCCTTCTTTGAGACTTGTGGT 60.092 45.455 0.00 0.00 0.00 4.16
353 373 3.135712 TGCCTTCTTTGAGACTTGTGGTA 59.864 43.478 0.00 0.00 0.00 3.25
354 374 4.134563 GCCTTCTTTGAGACTTGTGGTAA 58.865 43.478 0.00 0.00 0.00 2.85
355 375 4.762251 GCCTTCTTTGAGACTTGTGGTAAT 59.238 41.667 0.00 0.00 0.00 1.89
356 376 5.106515 GCCTTCTTTGAGACTTGTGGTAATC 60.107 44.000 0.00 0.00 0.00 1.75
357 377 5.412904 CCTTCTTTGAGACTTGTGGTAATCC 59.587 44.000 0.00 0.00 0.00 3.01
358 378 5.560722 TCTTTGAGACTTGTGGTAATCCA 57.439 39.130 0.00 0.00 42.05 3.41
359 379 6.126863 TCTTTGAGACTTGTGGTAATCCAT 57.873 37.500 0.00 0.00 46.20 3.41
360 380 5.939883 TCTTTGAGACTTGTGGTAATCCATG 59.060 40.000 0.00 0.00 46.20 3.66
361 381 4.908601 TGAGACTTGTGGTAATCCATGT 57.091 40.909 0.00 0.00 46.20 3.21
362 382 4.578871 TGAGACTTGTGGTAATCCATGTG 58.421 43.478 0.00 0.00 46.20 3.21
363 383 3.941483 GAGACTTGTGGTAATCCATGTGG 59.059 47.826 0.00 0.00 46.20 4.17
364 384 3.016736 GACTTGTGGTAATCCATGTGGG 58.983 50.000 0.00 0.00 46.20 4.61
365 385 2.291540 ACTTGTGGTAATCCATGTGGGG 60.292 50.000 0.00 0.00 46.20 4.96
366 386 0.628522 TGTGGTAATCCATGTGGGGG 59.371 55.000 0.00 0.00 46.20 5.40
367 387 0.629058 GTGGTAATCCATGTGGGGGT 59.371 55.000 0.00 0.00 46.20 4.95
368 388 0.628522 TGGTAATCCATGTGGGGGTG 59.371 55.000 0.00 0.00 39.03 4.61
369 389 0.923358 GGTAATCCATGTGGGGGTGA 59.077 55.000 0.00 0.00 37.22 4.02
370 390 1.286553 GGTAATCCATGTGGGGGTGAA 59.713 52.381 0.00 0.00 37.22 3.18
371 391 2.291930 GGTAATCCATGTGGGGGTGAAA 60.292 50.000 0.00 0.00 37.22 2.69
372 392 2.236489 AATCCATGTGGGGGTGAAAG 57.764 50.000 0.00 0.00 37.22 2.62
373 393 1.084018 ATCCATGTGGGGGTGAAAGT 58.916 50.000 0.00 0.00 37.22 2.66
374 394 1.748732 TCCATGTGGGGGTGAAAGTA 58.251 50.000 0.00 0.00 37.22 2.24
375 395 1.633432 TCCATGTGGGGGTGAAAGTAG 59.367 52.381 0.00 0.00 37.22 2.57
376 396 1.633432 CCATGTGGGGGTGAAAGTAGA 59.367 52.381 0.00 0.00 0.00 2.59
377 397 2.356125 CCATGTGGGGGTGAAAGTAGAG 60.356 54.545 0.00 0.00 0.00 2.43
378 398 1.358152 TGTGGGGGTGAAAGTAGAGG 58.642 55.000 0.00 0.00 0.00 3.69
379 399 1.132657 TGTGGGGGTGAAAGTAGAGGA 60.133 52.381 0.00 0.00 0.00 3.71
380 400 1.982958 GTGGGGGTGAAAGTAGAGGAA 59.017 52.381 0.00 0.00 0.00 3.36
381 401 2.027100 GTGGGGGTGAAAGTAGAGGAAG 60.027 54.545 0.00 0.00 0.00 3.46
382 402 2.158066 TGGGGGTGAAAGTAGAGGAAGA 60.158 50.000 0.00 0.00 0.00 2.87
383 403 2.910977 GGGGGTGAAAGTAGAGGAAGAA 59.089 50.000 0.00 0.00 0.00 2.52
384 404 3.329814 GGGGGTGAAAGTAGAGGAAGAAA 59.670 47.826 0.00 0.00 0.00 2.52
385 405 4.565861 GGGGGTGAAAGTAGAGGAAGAAAG 60.566 50.000 0.00 0.00 0.00 2.62
386 406 4.286291 GGGGTGAAAGTAGAGGAAGAAAGA 59.714 45.833 0.00 0.00 0.00 2.52
387 407 5.221864 GGGGTGAAAGTAGAGGAAGAAAGAA 60.222 44.000 0.00 0.00 0.00 2.52
388 408 5.935206 GGGTGAAAGTAGAGGAAGAAAGAAG 59.065 44.000 0.00 0.00 0.00 2.85
389 409 6.239629 GGGTGAAAGTAGAGGAAGAAAGAAGA 60.240 42.308 0.00 0.00 0.00 2.87
390 410 7.217906 GGTGAAAGTAGAGGAAGAAAGAAGAA 58.782 38.462 0.00 0.00 0.00 2.52
391 411 7.715686 GGTGAAAGTAGAGGAAGAAAGAAGAAA 59.284 37.037 0.00 0.00 0.00 2.52
392 412 9.110502 GTGAAAGTAGAGGAAGAAAGAAGAAAA 57.889 33.333 0.00 0.00 0.00 2.29
393 413 9.681062 TGAAAGTAGAGGAAGAAAGAAGAAAAA 57.319 29.630 0.00 0.00 0.00 1.94
409 429 2.399396 AAAAACGAAGCGTCCATGTG 57.601 45.000 0.00 0.00 39.99 3.21
410 430 1.305201 AAAACGAAGCGTCCATGTGT 58.695 45.000 0.00 0.00 39.99 3.72
411 431 1.305201 AAACGAAGCGTCCATGTGTT 58.695 45.000 0.00 0.00 39.99 3.32
412 432 1.305201 AACGAAGCGTCCATGTGTTT 58.695 45.000 0.00 0.00 39.99 2.83
413 433 0.865769 ACGAAGCGTCCATGTGTTTC 59.134 50.000 0.00 0.00 33.69 2.78
414 434 1.148310 CGAAGCGTCCATGTGTTTCT 58.852 50.000 0.00 0.00 0.00 2.52
415 435 1.531149 CGAAGCGTCCATGTGTTTCTT 59.469 47.619 0.00 0.00 0.00 2.52
416 436 2.032030 CGAAGCGTCCATGTGTTTCTTT 60.032 45.455 0.00 0.00 0.00 2.52
417 437 3.185594 CGAAGCGTCCATGTGTTTCTTTA 59.814 43.478 0.00 0.00 0.00 1.85
418 438 4.666655 CGAAGCGTCCATGTGTTTCTTTAG 60.667 45.833 0.00 0.00 0.00 1.85
419 439 4.002906 AGCGTCCATGTGTTTCTTTAGA 57.997 40.909 0.00 0.00 0.00 2.10
420 440 3.997021 AGCGTCCATGTGTTTCTTTAGAG 59.003 43.478 0.00 0.00 0.00 2.43
421 441 3.994392 GCGTCCATGTGTTTCTTTAGAGA 59.006 43.478 0.00 0.00 0.00 3.10
422 442 4.451096 GCGTCCATGTGTTTCTTTAGAGAA 59.549 41.667 0.00 0.00 40.07 2.87
423 443 5.049680 GCGTCCATGTGTTTCTTTAGAGAAA 60.050 40.000 4.39 4.39 46.77 2.52
436 456 7.360575 TCTTTAGAGAAAAAGTATCAACGGC 57.639 36.000 0.00 0.00 37.65 5.68
437 457 7.159372 TCTTTAGAGAAAAAGTATCAACGGCT 58.841 34.615 0.00 0.00 37.65 5.52
438 458 6.721571 TTAGAGAAAAAGTATCAACGGCTG 57.278 37.500 0.00 0.00 0.00 4.85
439 459 4.003648 AGAGAAAAAGTATCAACGGCTGG 58.996 43.478 0.00 0.00 0.00 4.85
440 460 2.488153 AGAAAAAGTATCAACGGCTGGC 59.512 45.455 0.00 0.00 0.00 4.85
441 461 2.200373 AAAAGTATCAACGGCTGGCT 57.800 45.000 0.00 0.00 0.00 4.75
442 462 1.739067 AAAGTATCAACGGCTGGCTC 58.261 50.000 0.00 0.00 0.00 4.70
443 463 0.905357 AAGTATCAACGGCTGGCTCT 59.095 50.000 0.00 0.00 0.00 4.09
444 464 0.176680 AGTATCAACGGCTGGCTCTG 59.823 55.000 0.00 0.00 0.00 3.35
445 465 0.108138 GTATCAACGGCTGGCTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
446 466 1.136305 GTATCAACGGCTGGCTCTGTA 59.864 52.381 0.00 0.00 0.00 2.74
447 467 0.176680 ATCAACGGCTGGCTCTGTAG 59.823 55.000 0.00 0.00 0.00 2.74
448 468 1.185618 TCAACGGCTGGCTCTGTAGT 61.186 55.000 0.00 0.00 0.00 2.73
449 469 0.530744 CAACGGCTGGCTCTGTAGTA 59.469 55.000 0.00 0.00 0.00 1.82
450 470 1.137086 CAACGGCTGGCTCTGTAGTAT 59.863 52.381 0.00 0.00 0.00 2.12
451 471 2.359981 ACGGCTGGCTCTGTAGTATA 57.640 50.000 0.00 0.00 0.00 1.47
452 472 2.877866 ACGGCTGGCTCTGTAGTATAT 58.122 47.619 0.00 0.00 0.00 0.86
453 473 4.030314 ACGGCTGGCTCTGTAGTATATA 57.970 45.455 0.00 0.00 0.00 0.86
454 474 3.757493 ACGGCTGGCTCTGTAGTATATAC 59.243 47.826 4.60 4.60 0.00 1.47
455 475 3.756963 CGGCTGGCTCTGTAGTATATACA 59.243 47.826 15.18 0.00 0.00 2.29
456 476 4.379603 CGGCTGGCTCTGTAGTATATACAC 60.380 50.000 15.18 10.98 0.00 2.90
457 477 4.523173 GGCTGGCTCTGTAGTATATACACA 59.477 45.833 15.18 14.35 0.00 3.72
458 478 5.336055 GGCTGGCTCTGTAGTATATACACAG 60.336 48.000 24.60 24.60 37.03 3.66
459 479 5.473846 GCTGGCTCTGTAGTATATACACAGA 59.526 44.000 27.72 27.72 39.58 3.41
460 480 6.016192 GCTGGCTCTGTAGTATATACACAGAA 60.016 42.308 28.45 20.59 40.39 3.02
461 481 7.273320 TGGCTCTGTAGTATATACACAGAAC 57.727 40.000 28.45 25.94 40.39 3.01
462 482 6.831868 TGGCTCTGTAGTATATACACAGAACA 59.168 38.462 28.45 26.57 40.39 3.18
463 483 7.505923 TGGCTCTGTAGTATATACACAGAACAT 59.494 37.037 28.45 9.52 40.39 2.71
464 484 9.011095 GGCTCTGTAGTATATACACAGAACATA 57.989 37.037 28.45 17.22 40.39 2.29
484 504 9.343539 GAACATAAGAATATAAGATATGGGCCC 57.656 37.037 17.59 17.59 0.00 5.80
485 505 7.816411 ACATAAGAATATAAGATATGGGCCCC 58.184 38.462 22.27 2.76 0.00 5.80
486 506 7.633391 ACATAAGAATATAAGATATGGGCCCCT 59.367 37.037 22.27 13.22 0.00 4.79
487 507 6.582929 AAGAATATAAGATATGGGCCCCTC 57.417 41.667 22.27 13.79 0.00 4.30
488 508 4.978388 AGAATATAAGATATGGGCCCCTCC 59.022 45.833 22.27 5.83 0.00 4.30
515 535 3.077556 CCCCTAGGCAGTCGCACT 61.078 66.667 2.05 0.00 41.24 4.40
516 536 2.496817 CCCTAGGCAGTCGCACTC 59.503 66.667 2.05 0.00 41.24 3.51
517 537 2.055042 CCCTAGGCAGTCGCACTCT 61.055 63.158 2.05 0.00 41.24 3.24
518 538 1.608717 CCCTAGGCAGTCGCACTCTT 61.609 60.000 2.05 0.00 41.24 2.85
519 539 0.247736 CCTAGGCAGTCGCACTCTTT 59.752 55.000 0.00 0.00 41.24 2.52
520 540 1.354040 CTAGGCAGTCGCACTCTTTG 58.646 55.000 0.00 0.00 41.24 2.77
528 548 3.911137 GCACTCTTTGCCTAGGCC 58.089 61.111 30.81 13.48 46.63 5.19
529 549 1.301293 GCACTCTTTGCCTAGGCCT 59.699 57.895 30.81 11.78 46.63 5.19
530 550 0.541863 GCACTCTTTGCCTAGGCCTA 59.458 55.000 30.81 16.21 46.63 3.93
531 551 1.474143 GCACTCTTTGCCTAGGCCTAG 60.474 57.143 30.05 30.05 46.63 3.02
633 660 1.153369 ACAGCACAGACACGCAGTT 60.153 52.632 0.00 0.00 41.61 3.16
635 662 0.508641 CAGCACAGACACGCAGTTAC 59.491 55.000 0.00 0.00 41.61 2.50
638 665 1.927268 GCACAGACACGCAGTTACGTA 60.927 52.381 0.00 0.00 46.34 3.57
789 2721 5.198207 GGCAGGTATACCCACTACAAATTT 58.802 41.667 18.65 0.00 36.42 1.82
790 2722 5.298527 GGCAGGTATACCCACTACAAATTTC 59.701 44.000 18.65 0.00 36.42 2.17
812 2747 2.137425 TACGTCAGTGCGGTGACAGG 62.137 60.000 16.12 5.63 46.19 4.00
835 2770 7.174946 CAGGTATGTTTCTTTTTCTTAGCCAGA 59.825 37.037 0.00 0.00 0.00 3.86
850 2785 9.739276 TTCTTAGCCAGAAAGAAAATATCTGAA 57.261 29.630 3.70 0.00 42.48 3.02
930 3390 1.536940 GGGCTAGACCGATAGAGACC 58.463 60.000 0.00 0.00 40.62 3.85
941 3401 2.223745 GATAGAGACCGAGTCCAGACC 58.776 57.143 0.00 0.00 32.18 3.85
977 3450 3.819337 ACTCGCTAGTTATATCGGCAAGA 59.181 43.478 0.00 0.00 29.00 3.02
978 3451 4.277672 ACTCGCTAGTTATATCGGCAAGAA 59.722 41.667 0.00 0.00 29.00 2.52
979 3452 4.795268 TCGCTAGTTATATCGGCAAGAAG 58.205 43.478 0.00 0.00 0.00 2.85
1326 3826 1.768684 ATCGTGTGGTGGTTCCTGCT 61.769 55.000 0.00 0.00 37.07 4.24
1328 3828 0.250124 CGTGTGGTGGTTCCTGCTTA 60.250 55.000 0.00 0.00 37.07 3.09
1492 4014 3.066481 GCAAGAGGAGCAGGATGATTTTC 59.934 47.826 0.00 0.00 39.69 2.29
1501 4023 2.939103 CAGGATGATTTTCAGGTCGACC 59.061 50.000 27.67 27.67 39.69 4.79
1502 4024 3.369892 CAGGATGATTTTCAGGTCGACCT 60.370 47.826 31.69 31.69 44.23 3.85
1694 4256 2.979678 AGGAGTGTGTTTAGTGGGATGT 59.020 45.455 0.00 0.00 0.00 3.06
1722 4289 4.947147 GCCCACGTCTGCAACCCA 62.947 66.667 1.09 0.00 0.00 4.51
1802 4374 0.550914 TTAAGGGCATCTCCGGCAAT 59.449 50.000 0.00 0.00 34.94 3.56
1943 4521 7.325821 TGAAATTCATTCAAACACAGCGTATTC 59.674 33.333 0.00 0.00 44.94 1.75
1951 4529 8.445275 TTCAAACACAGCGTATTCCATATAAT 57.555 30.769 0.00 0.00 0.00 1.28
1956 4534 4.222145 ACAGCGTATTCCATATAATCCGGT 59.778 41.667 0.00 0.00 30.46 5.28
2134 4717 3.168528 GGATTGCCGGGAGCCCTA 61.169 66.667 2.18 0.00 42.71 3.53
2192 4775 2.580815 CGCTGCTCATGGGAGTGA 59.419 61.111 0.00 0.00 44.90 3.41
2247 4832 1.228894 TCCTCTGCTTCCGTGGAGT 60.229 57.895 0.00 0.00 0.00 3.85
2249 4834 1.254284 CCTCTGCTTCCGTGGAGTCT 61.254 60.000 0.00 0.00 0.00 3.24
2386 4972 5.694910 GTGTTCTACTTTTCCTCGATGTTGA 59.305 40.000 0.00 0.00 0.00 3.18
2418 5004 2.734591 GCACTGACCACCGACTCA 59.265 61.111 0.00 0.00 0.00 3.41
2420 5006 0.320771 GCACTGACCACCGACTCATT 60.321 55.000 0.00 0.00 0.00 2.57
2467 5053 2.046700 CCGGCAGGGCGAAGTTAA 60.047 61.111 17.24 0.00 0.00 2.01
2474 5060 0.968405 AGGGCGAAGTTAACGGTGTA 59.032 50.000 0.00 0.00 0.00 2.90
2475 5061 1.551883 AGGGCGAAGTTAACGGTGTAT 59.448 47.619 0.00 0.00 0.00 2.29
2476 5062 1.662122 GGGCGAAGTTAACGGTGTATG 59.338 52.381 0.00 0.00 0.00 2.39
2477 5063 1.662122 GGCGAAGTTAACGGTGTATGG 59.338 52.381 0.00 0.00 0.00 2.74
2478 5064 1.061566 GCGAAGTTAACGGTGTATGGC 59.938 52.381 0.00 0.00 0.00 4.40
2479 5065 1.322338 CGAAGTTAACGGTGTATGGCG 59.678 52.381 0.00 0.00 0.00 5.69
2480 5066 2.340337 GAAGTTAACGGTGTATGGCGT 58.660 47.619 0.00 0.00 0.00 5.68
2481 5067 1.717194 AGTTAACGGTGTATGGCGTG 58.283 50.000 0.00 0.00 0.00 5.34
2482 5068 0.722848 GTTAACGGTGTATGGCGTGG 59.277 55.000 0.00 0.00 0.00 4.94
2483 5069 0.321021 TTAACGGTGTATGGCGTGGT 59.679 50.000 0.00 0.00 0.00 4.16
2484 5070 0.108709 TAACGGTGTATGGCGTGGTC 60.109 55.000 0.00 0.00 0.00 4.02
2485 5071 2.883730 CGGTGTATGGCGTGGTCG 60.884 66.667 0.00 0.00 40.37 4.79
2486 5072 2.263540 GGTGTATGGCGTGGTCGT 59.736 61.111 0.00 0.00 39.49 4.34
2487 5073 2.098233 GGTGTATGGCGTGGTCGTG 61.098 63.158 0.00 0.00 39.49 4.35
2488 5074 2.433491 TGTATGGCGTGGTCGTGC 60.433 61.111 0.00 0.00 39.49 5.34
2489 5075 2.125673 GTATGGCGTGGTCGTGCT 60.126 61.111 0.00 0.00 39.49 4.40
2490 5076 2.125713 TATGGCGTGGTCGTGCTG 60.126 61.111 0.00 0.00 39.49 4.41
2491 5077 2.938086 TATGGCGTGGTCGTGCTGT 61.938 57.895 0.00 0.00 39.49 4.40
2492 5078 2.829043 TATGGCGTGGTCGTGCTGTC 62.829 60.000 0.00 0.00 39.49 3.51
2494 5080 4.664677 GCGTGGTCGTGCTGTCCT 62.665 66.667 0.00 0.00 39.49 3.85
2495 5081 2.734723 CGTGGTCGTGCTGTCCTG 60.735 66.667 0.00 0.00 0.00 3.86
2496 5082 2.357517 GTGGTCGTGCTGTCCTGG 60.358 66.667 0.00 0.00 0.00 4.45
2497 5083 2.523168 TGGTCGTGCTGTCCTGGA 60.523 61.111 0.00 0.00 0.00 3.86
2498 5084 2.262915 GGTCGTGCTGTCCTGGAG 59.737 66.667 0.00 0.00 0.00 3.86
2499 5085 2.433318 GTCGTGCTGTCCTGGAGC 60.433 66.667 0.00 0.00 36.95 4.70
2500 5086 2.917227 TCGTGCTGTCCTGGAGCA 60.917 61.111 6.53 6.53 44.22 4.26
2503 5089 3.567308 TGCTGTCCTGGAGCAACT 58.433 55.556 8.06 0.00 43.47 3.16
2504 5090 1.372683 TGCTGTCCTGGAGCAACTC 59.627 57.895 8.06 0.00 43.47 3.01
2505 5091 1.739562 GCTGTCCTGGAGCAACTCG 60.740 63.158 0.00 0.00 36.40 4.18
2506 5092 1.668294 CTGTCCTGGAGCAACTCGT 59.332 57.895 0.00 0.00 0.00 4.18
2507 5093 0.389166 CTGTCCTGGAGCAACTCGTC 60.389 60.000 0.00 0.00 0.00 4.20
2508 5094 1.444553 GTCCTGGAGCAACTCGTCG 60.445 63.158 0.00 0.00 0.00 5.12
2509 5095 1.901948 TCCTGGAGCAACTCGTCGT 60.902 57.895 0.00 0.00 0.00 4.34
2510 5096 1.006102 CCTGGAGCAACTCGTCGTT 60.006 57.895 0.00 0.00 35.88 3.85
2511 5097 1.009389 CCTGGAGCAACTCGTCGTTC 61.009 60.000 0.00 0.00 32.27 3.95
2512 5098 1.006571 TGGAGCAACTCGTCGTTCC 60.007 57.895 0.00 0.00 32.27 3.62
2513 5099 1.289380 GGAGCAACTCGTCGTTCCT 59.711 57.895 0.00 0.00 32.27 3.36
2514 5100 0.733223 GGAGCAACTCGTCGTTCCTC 60.733 60.000 3.67 3.67 39.28 3.71
2515 5101 0.733223 GAGCAACTCGTCGTTCCTCC 60.733 60.000 0.00 0.00 34.89 4.30
2516 5102 2.087009 GCAACTCGTCGTTCCTCCG 61.087 63.158 0.00 0.00 32.27 4.63
2517 5103 2.087009 CAACTCGTCGTTCCTCCGC 61.087 63.158 0.00 0.00 32.27 5.54
2518 5104 3.606065 AACTCGTCGTTCCTCCGCG 62.606 63.158 0.00 0.00 0.00 6.46
2519 5105 3.796443 CTCGTCGTTCCTCCGCGA 61.796 66.667 8.23 0.00 35.94 5.87
2520 5106 3.720106 CTCGTCGTTCCTCCGCGAG 62.720 68.421 8.23 2.69 42.82 5.03
2521 5107 4.099170 CGTCGTTCCTCCGCGAGT 62.099 66.667 8.23 0.00 37.82 4.18
2522 5108 2.257676 GTCGTTCCTCCGCGAGTT 59.742 61.111 8.23 0.00 37.82 3.01
2523 5109 2.087009 GTCGTTCCTCCGCGAGTTG 61.087 63.158 8.23 0.00 37.82 3.16
2524 5110 2.809601 CGTTCCTCCGCGAGTTGG 60.810 66.667 8.23 3.78 0.00 3.77
2525 5111 3.119096 GTTCCTCCGCGAGTTGGC 61.119 66.667 8.23 0.00 0.00 4.52
2526 5112 3.311110 TTCCTCCGCGAGTTGGCT 61.311 61.111 8.23 0.00 0.00 4.75
2527 5113 2.879233 TTCCTCCGCGAGTTGGCTT 61.879 57.895 8.23 0.00 0.00 4.35
2528 5114 3.121030 CCTCCGCGAGTTGGCTTG 61.121 66.667 8.23 0.00 0.00 4.01
2529 5115 3.121030 CTCCGCGAGTTGGCTTGG 61.121 66.667 8.23 0.00 0.00 3.61
2530 5116 3.589654 CTCCGCGAGTTGGCTTGGA 62.590 63.158 8.23 0.00 0.00 3.53
2531 5117 3.121030 CCGCGAGTTGGCTTGGAG 61.121 66.667 8.23 0.00 0.00 3.86
2532 5118 3.793144 CGCGAGTTGGCTTGGAGC 61.793 66.667 0.00 0.00 41.46 4.70
2533 5119 2.669569 GCGAGTTGGCTTGGAGCA 60.670 61.111 2.04 0.00 44.75 4.26
2534 5120 2.684843 GCGAGTTGGCTTGGAGCAG 61.685 63.158 2.04 0.00 44.75 4.24
2535 5121 2.684843 CGAGTTGGCTTGGAGCAGC 61.685 63.158 2.04 0.00 44.75 5.25
2536 5122 1.601759 GAGTTGGCTTGGAGCAGCA 60.602 57.895 0.00 0.00 44.75 4.41
2537 5123 1.152694 AGTTGGCTTGGAGCAGCAA 60.153 52.632 0.00 0.00 44.75 3.91
2538 5124 1.177256 AGTTGGCTTGGAGCAGCAAG 61.177 55.000 0.00 0.00 44.75 4.01
2539 5125 1.152694 TTGGCTTGGAGCAGCAAGT 60.153 52.632 0.00 0.00 44.75 3.16
2540 5126 0.756442 TTGGCTTGGAGCAGCAAGTT 60.756 50.000 0.00 0.00 44.75 2.66
2541 5127 1.288127 GGCTTGGAGCAGCAAGTTG 59.712 57.895 0.00 0.00 44.75 3.16
2542 5128 1.372623 GCTTGGAGCAGCAAGTTGC 60.373 57.895 20.44 20.44 45.46 4.17
2553 5139 2.869233 GCAAGTTGCTGAACCTTTCA 57.131 45.000 20.71 0.00 40.96 2.69
2554 5140 2.463876 GCAAGTTGCTGAACCTTTCAC 58.536 47.619 20.71 0.00 40.96 3.18
2555 5141 2.799562 GCAAGTTGCTGAACCTTTCACC 60.800 50.000 20.71 0.00 40.96 4.02
2556 5142 1.308998 AGTTGCTGAACCTTTCACCG 58.691 50.000 0.00 0.00 35.46 4.94
2557 5143 0.310854 GTTGCTGAACCTTTCACCGG 59.689 55.000 0.00 0.00 35.46 5.28
2558 5144 1.452145 TTGCTGAACCTTTCACCGGC 61.452 55.000 0.00 0.00 35.46 6.13
2559 5145 1.600916 GCTGAACCTTTCACCGGCT 60.601 57.895 0.00 0.00 35.46 5.52
2560 5146 1.172812 GCTGAACCTTTCACCGGCTT 61.173 55.000 0.00 0.00 35.46 4.35
2561 5147 1.318576 CTGAACCTTTCACCGGCTTT 58.681 50.000 0.00 0.00 35.46 3.51
2562 5148 1.001378 CTGAACCTTTCACCGGCTTTG 60.001 52.381 0.00 0.00 35.46 2.77
2563 5149 1.314730 GAACCTTTCACCGGCTTTGA 58.685 50.000 0.00 0.00 0.00 2.69
2564 5150 1.266989 GAACCTTTCACCGGCTTTGAG 59.733 52.381 0.00 0.00 0.00 3.02
2565 5151 0.182775 ACCTTTCACCGGCTTTGAGT 59.817 50.000 0.00 0.00 0.00 3.41
2566 5152 0.593128 CCTTTCACCGGCTTTGAGTG 59.407 55.000 0.00 0.00 0.00 3.51
2567 5153 0.593128 CTTTCACCGGCTTTGAGTGG 59.407 55.000 0.00 0.00 32.29 4.00
2568 5154 1.452145 TTTCACCGGCTTTGAGTGGC 61.452 55.000 0.00 0.00 32.29 5.01
2569 5155 2.594303 CACCGGCTTTGAGTGGCA 60.594 61.111 0.00 0.00 0.00 4.92
2570 5156 2.192861 CACCGGCTTTGAGTGGCAA 61.193 57.895 0.00 0.00 33.88 4.52
2571 5157 2.193536 ACCGGCTTTGAGTGGCAAC 61.194 57.895 0.00 0.00 35.91 4.17
2572 5158 1.898574 CCGGCTTTGAGTGGCAACT 60.899 57.895 0.00 0.00 40.21 3.16
2573 5159 1.455383 CCGGCTTTGAGTGGCAACTT 61.455 55.000 0.00 0.00 36.52 2.66
2574 5160 0.318107 CGGCTTTGAGTGGCAACTTG 60.318 55.000 0.00 0.00 36.52 3.16
2575 5161 0.598419 GGCTTTGAGTGGCAACTTGC 60.598 55.000 5.08 5.08 44.08 4.01
2576 5162 0.386838 GCTTTGAGTGGCAACTTGCT 59.613 50.000 13.43 0.00 44.28 3.91
2577 5163 1.601412 GCTTTGAGTGGCAACTTGCTC 60.601 52.381 13.43 4.36 44.28 4.26
2578 5164 1.952296 CTTTGAGTGGCAACTTGCTCT 59.048 47.619 13.43 11.61 44.28 4.09
2579 5165 1.311859 TTGAGTGGCAACTTGCTCTG 58.688 50.000 13.43 0.00 44.28 3.35
2580 5166 0.181114 TGAGTGGCAACTTGCTCTGT 59.819 50.000 13.43 0.00 44.28 3.41
2581 5167 0.871057 GAGTGGCAACTTGCTCTGTC 59.129 55.000 13.43 2.68 44.28 3.51
2582 5168 0.882042 AGTGGCAACTTGCTCTGTCG 60.882 55.000 13.43 0.00 44.28 4.35
2583 5169 1.597854 TGGCAACTTGCTCTGTCGG 60.598 57.895 13.43 0.00 44.28 4.79
2584 5170 1.301716 GGCAACTTGCTCTGTCGGA 60.302 57.895 13.43 0.00 44.28 4.55
2585 5171 1.569479 GGCAACTTGCTCTGTCGGAC 61.569 60.000 13.43 0.00 44.28 4.79
2586 5172 0.601311 GCAACTTGCTCTGTCGGACT 60.601 55.000 9.88 0.00 40.96 3.85
2587 5173 1.871080 CAACTTGCTCTGTCGGACTT 58.129 50.000 9.88 0.00 0.00 3.01
2588 5174 1.528586 CAACTTGCTCTGTCGGACTTG 59.471 52.381 9.88 2.77 0.00 3.16
2589 5175 0.034059 ACTTGCTCTGTCGGACTTGG 59.966 55.000 9.88 0.34 0.00 3.61
2590 5176 0.318441 CTTGCTCTGTCGGACTTGGA 59.682 55.000 9.88 4.59 0.00 3.53
2591 5177 0.318441 TTGCTCTGTCGGACTTGGAG 59.682 55.000 9.88 13.82 0.00 3.86
2592 5178 1.216710 GCTCTGTCGGACTTGGAGG 59.783 63.158 19.39 8.56 0.00 4.30
2593 5179 1.536943 GCTCTGTCGGACTTGGAGGT 61.537 60.000 19.39 0.00 0.00 3.85
2594 5180 1.835494 CTCTGTCGGACTTGGAGGTA 58.165 55.000 9.88 0.00 0.00 3.08
2595 5181 1.746220 CTCTGTCGGACTTGGAGGTAG 59.254 57.143 9.88 0.00 0.00 3.18
2596 5182 1.353358 TCTGTCGGACTTGGAGGTAGA 59.647 52.381 9.88 0.00 0.00 2.59
2597 5183 1.746220 CTGTCGGACTTGGAGGTAGAG 59.254 57.143 9.88 0.00 0.00 2.43
2598 5184 0.456628 GTCGGACTTGGAGGTAGAGC 59.543 60.000 0.00 0.00 0.00 4.09
2599 5185 0.039180 TCGGACTTGGAGGTAGAGCA 59.961 55.000 0.00 0.00 0.00 4.26
2600 5186 0.457851 CGGACTTGGAGGTAGAGCAG 59.542 60.000 0.00 0.00 0.00 4.24
2601 5187 0.176910 GGACTTGGAGGTAGAGCAGC 59.823 60.000 0.00 0.00 0.00 5.25
2602 5188 0.179124 GACTTGGAGGTAGAGCAGCG 60.179 60.000 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.876257 ACTTGCTTCTATTGAGAAACGATCTT 59.124 34.615 0.00 0.00 41.23 2.40
117 130 2.089887 TAGCGTGGCGGTCAAAGTCA 62.090 55.000 0.00 0.00 38.83 3.41
175 190 2.286595 TGTAGAATAGCGCGTTAGACGG 60.287 50.000 8.43 0.00 42.82 4.79
193 213 2.184836 GCCGGCCACGTACATGTA 59.815 61.111 18.11 0.08 38.78 2.29
198 218 4.217159 CTAGGGCCGGCCACGTAC 62.217 72.222 44.46 27.85 38.78 3.67
202 222 4.506255 ATTGCTAGGGCCGGCCAC 62.506 66.667 44.46 32.74 37.98 5.01
203 223 3.714487 GAATTGCTAGGGCCGGCCA 62.714 63.158 44.46 26.34 37.98 5.36
204 224 2.907407 GAATTGCTAGGGCCGGCC 60.907 66.667 38.57 38.57 37.74 6.13
205 225 2.189499 CAGAATTGCTAGGGCCGGC 61.189 63.158 21.18 21.18 37.74 6.13
206 226 0.533755 CTCAGAATTGCTAGGGCCGG 60.534 60.000 0.00 0.00 37.74 6.13
208 228 0.821301 GCCTCAGAATTGCTAGGGCC 60.821 60.000 0.00 0.00 37.42 5.80
211 231 0.842635 AGGGCCTCAGAATTGCTAGG 59.157 55.000 0.00 0.00 0.00 3.02
212 232 2.703007 ACTAGGGCCTCAGAATTGCTAG 59.297 50.000 10.74 0.00 0.00 3.42
214 234 1.211457 CACTAGGGCCTCAGAATTGCT 59.789 52.381 10.74 0.00 0.00 3.91
215 235 1.673168 CACTAGGGCCTCAGAATTGC 58.327 55.000 10.74 0.00 0.00 3.56
218 238 1.211457 CTTGCACTAGGGCCTCAGAAT 59.789 52.381 15.98 0.00 0.00 2.40
219 239 0.615331 CTTGCACTAGGGCCTCAGAA 59.385 55.000 15.98 0.00 0.00 3.02
220 240 0.545309 ACTTGCACTAGGGCCTCAGA 60.545 55.000 15.98 0.00 0.00 3.27
221 241 0.392193 CACTTGCACTAGGGCCTCAG 60.392 60.000 15.98 10.38 0.00 3.35
222 242 1.127567 ACACTTGCACTAGGGCCTCA 61.128 55.000 15.98 0.00 0.00 3.86
223 243 0.674895 CACACTTGCACTAGGGCCTC 60.675 60.000 15.98 0.00 0.00 4.70
224 244 1.376466 CACACTTGCACTAGGGCCT 59.624 57.895 15.98 12.58 0.00 5.19
225 245 3.987404 CACACTTGCACTAGGGCC 58.013 61.111 15.98 0.00 0.00 5.80
235 255 2.270275 TTTGTTCGGTTGCACACTTG 57.730 45.000 0.00 0.00 0.00 3.16
236 256 2.223711 GGATTTGTTCGGTTGCACACTT 60.224 45.455 0.00 0.00 0.00 3.16
237 257 1.336755 GGATTTGTTCGGTTGCACACT 59.663 47.619 0.00 0.00 0.00 3.55
238 258 1.066303 TGGATTTGTTCGGTTGCACAC 59.934 47.619 0.00 0.00 0.00 3.82
239 259 1.393603 TGGATTTGTTCGGTTGCACA 58.606 45.000 0.00 0.00 0.00 4.57
240 260 2.723124 ATGGATTTGTTCGGTTGCAC 57.277 45.000 0.00 0.00 0.00 4.57
241 261 3.068732 TCAAATGGATTTGTTCGGTTGCA 59.931 39.130 11.02 0.00 45.49 4.08
242 262 3.648009 TCAAATGGATTTGTTCGGTTGC 58.352 40.909 11.02 0.00 45.49 4.17
243 263 6.865726 TGTTATCAAATGGATTTGTTCGGTTG 59.134 34.615 11.02 0.00 45.49 3.77
244 264 6.987386 TGTTATCAAATGGATTTGTTCGGTT 58.013 32.000 11.02 0.00 45.49 4.44
245 265 6.582677 TGTTATCAAATGGATTTGTTCGGT 57.417 33.333 11.02 0.00 45.49 4.69
246 266 7.812191 TCTTTGTTATCAAATGGATTTGTTCGG 59.188 33.333 11.02 0.00 45.49 4.30
247 267 8.741101 TCTTTGTTATCAAATGGATTTGTTCG 57.259 30.769 11.02 0.00 45.49 3.95
248 268 9.912634 TCTCTTTGTTATCAAATGGATTTGTTC 57.087 29.630 11.02 3.25 45.49 3.18
261 281 9.231297 CCACCTTAATCTTTCTCTTTGTTATCA 57.769 33.333 0.00 0.00 0.00 2.15
262 282 9.232473 ACCACCTTAATCTTTCTCTTTGTTATC 57.768 33.333 0.00 0.00 0.00 1.75
263 283 9.014297 CACCACCTTAATCTTTCTCTTTGTTAT 57.986 33.333 0.00 0.00 0.00 1.89
264 284 8.215050 TCACCACCTTAATCTTTCTCTTTGTTA 58.785 33.333 0.00 0.00 0.00 2.41
265 285 7.060421 TCACCACCTTAATCTTTCTCTTTGTT 58.940 34.615 0.00 0.00 0.00 2.83
266 286 6.601332 TCACCACCTTAATCTTTCTCTTTGT 58.399 36.000 0.00 0.00 0.00 2.83
267 287 7.693969 ATCACCACCTTAATCTTTCTCTTTG 57.306 36.000 0.00 0.00 0.00 2.77
268 288 8.383175 TGTATCACCACCTTAATCTTTCTCTTT 58.617 33.333 0.00 0.00 0.00 2.52
269 289 7.824779 GTGTATCACCACCTTAATCTTTCTCTT 59.175 37.037 0.00 0.00 0.00 2.85
270 290 7.331791 GTGTATCACCACCTTAATCTTTCTCT 58.668 38.462 0.00 0.00 0.00 3.10
271 291 7.541122 GTGTATCACCACCTTAATCTTTCTC 57.459 40.000 0.00 0.00 0.00 2.87
300 320 9.097257 CCCAACGATGCTAATTTAATGATTTTT 57.903 29.630 0.00 0.00 0.00 1.94
301 321 8.257306 ACCCAACGATGCTAATTTAATGATTTT 58.743 29.630 0.00 0.00 0.00 1.82
302 322 7.781056 ACCCAACGATGCTAATTTAATGATTT 58.219 30.769 0.00 0.00 0.00 2.17
303 323 7.346751 ACCCAACGATGCTAATTTAATGATT 57.653 32.000 0.00 0.00 0.00 2.57
304 324 6.016276 GGACCCAACGATGCTAATTTAATGAT 60.016 38.462 0.00 0.00 0.00 2.45
305 325 5.298276 GGACCCAACGATGCTAATTTAATGA 59.702 40.000 0.00 0.00 0.00 2.57
306 326 5.507315 GGGACCCAACGATGCTAATTTAATG 60.507 44.000 5.33 0.00 0.00 1.90
307 327 4.583073 GGGACCCAACGATGCTAATTTAAT 59.417 41.667 5.33 0.00 0.00 1.40
308 328 3.949113 GGGACCCAACGATGCTAATTTAA 59.051 43.478 5.33 0.00 0.00 1.52
309 329 3.201266 AGGGACCCAACGATGCTAATTTA 59.799 43.478 14.60 0.00 0.00 1.40
310 330 2.025321 AGGGACCCAACGATGCTAATTT 60.025 45.455 14.60 0.00 0.00 1.82
311 331 1.564348 AGGGACCCAACGATGCTAATT 59.436 47.619 14.60 0.00 0.00 1.40
312 332 1.134098 CAGGGACCCAACGATGCTAAT 60.134 52.381 14.60 0.00 0.00 1.73
313 333 0.251916 CAGGGACCCAACGATGCTAA 59.748 55.000 14.60 0.00 0.00 3.09
314 334 1.904771 CAGGGACCCAACGATGCTA 59.095 57.895 14.60 0.00 0.00 3.49
315 335 2.671070 CAGGGACCCAACGATGCT 59.329 61.111 14.60 0.00 0.00 3.79
316 336 3.134127 GCAGGGACCCAACGATGC 61.134 66.667 14.60 9.78 0.00 3.91
317 337 2.438434 GGCAGGGACCCAACGATG 60.438 66.667 14.60 2.40 0.00 3.84
318 338 2.198304 GAAGGCAGGGACCCAACGAT 62.198 60.000 14.60 0.00 0.00 3.73
319 339 2.852075 AAGGCAGGGACCCAACGA 60.852 61.111 14.60 0.00 0.00 3.85
320 340 2.359975 GAAGGCAGGGACCCAACG 60.360 66.667 14.60 1.32 0.00 4.10
321 341 0.178961 AAAGAAGGCAGGGACCCAAC 60.179 55.000 14.60 3.45 0.00 3.77
322 342 0.178964 CAAAGAAGGCAGGGACCCAA 60.179 55.000 14.60 0.00 0.00 4.12
323 343 1.065410 TCAAAGAAGGCAGGGACCCA 61.065 55.000 14.60 0.00 0.00 4.51
324 344 0.322906 CTCAAAGAAGGCAGGGACCC 60.323 60.000 0.59 0.59 0.00 4.46
325 345 0.693049 TCTCAAAGAAGGCAGGGACC 59.307 55.000 0.00 0.00 0.00 4.46
326 346 1.349357 AGTCTCAAAGAAGGCAGGGAC 59.651 52.381 0.00 0.00 0.00 4.46
327 347 1.734655 AGTCTCAAAGAAGGCAGGGA 58.265 50.000 0.00 0.00 0.00 4.20
328 348 2.157738 CAAGTCTCAAAGAAGGCAGGG 58.842 52.381 0.00 0.00 0.00 4.45
329 349 2.551459 CACAAGTCTCAAAGAAGGCAGG 59.449 50.000 0.00 0.00 0.00 4.85
330 350 2.551459 CCACAAGTCTCAAAGAAGGCAG 59.449 50.000 0.00 0.00 0.00 4.85
331 351 2.092429 ACCACAAGTCTCAAAGAAGGCA 60.092 45.455 0.00 0.00 0.00 4.75
332 352 2.576615 ACCACAAGTCTCAAAGAAGGC 58.423 47.619 0.00 0.00 0.00 4.35
333 353 5.412904 GGATTACCACAAGTCTCAAAGAAGG 59.587 44.000 0.00 0.00 35.97 3.46
334 354 5.997746 TGGATTACCACAAGTCTCAAAGAAG 59.002 40.000 0.00 0.00 41.77 2.85
335 355 5.935945 TGGATTACCACAAGTCTCAAAGAA 58.064 37.500 0.00 0.00 41.77 2.52
336 356 5.560722 TGGATTACCACAAGTCTCAAAGA 57.439 39.130 0.00 0.00 41.77 2.52
350 370 0.923358 TCACCCCCACATGGATTACC 59.077 55.000 0.00 0.00 37.39 2.85
351 371 2.818751 TTCACCCCCACATGGATTAC 57.181 50.000 0.00 0.00 37.39 1.89
352 372 2.652348 ACTTTCACCCCCACATGGATTA 59.348 45.455 0.00 0.00 37.39 1.75
353 373 1.432807 ACTTTCACCCCCACATGGATT 59.567 47.619 0.00 0.00 37.39 3.01
354 374 1.084018 ACTTTCACCCCCACATGGAT 58.916 50.000 0.00 0.00 37.39 3.41
355 375 1.633432 CTACTTTCACCCCCACATGGA 59.367 52.381 0.00 0.00 37.39 3.41
356 376 1.633432 TCTACTTTCACCCCCACATGG 59.367 52.381 0.00 0.00 0.00 3.66
357 377 2.356125 CCTCTACTTTCACCCCCACATG 60.356 54.545 0.00 0.00 0.00 3.21
358 378 1.916181 CCTCTACTTTCACCCCCACAT 59.084 52.381 0.00 0.00 0.00 3.21
359 379 1.132657 TCCTCTACTTTCACCCCCACA 60.133 52.381 0.00 0.00 0.00 4.17
360 380 1.652947 TCCTCTACTTTCACCCCCAC 58.347 55.000 0.00 0.00 0.00 4.61
361 381 2.158066 TCTTCCTCTACTTTCACCCCCA 60.158 50.000 0.00 0.00 0.00 4.96
362 382 2.547990 TCTTCCTCTACTTTCACCCCC 58.452 52.381 0.00 0.00 0.00 5.40
363 383 4.286291 TCTTTCTTCCTCTACTTTCACCCC 59.714 45.833 0.00 0.00 0.00 4.95
364 384 5.485209 TCTTTCTTCCTCTACTTTCACCC 57.515 43.478 0.00 0.00 0.00 4.61
365 385 6.760291 TCTTCTTTCTTCCTCTACTTTCACC 58.240 40.000 0.00 0.00 0.00 4.02
366 386 8.664211 TTTCTTCTTTCTTCCTCTACTTTCAC 57.336 34.615 0.00 0.00 0.00 3.18
367 387 9.681062 TTTTTCTTCTTTCTTCCTCTACTTTCA 57.319 29.630 0.00 0.00 0.00 2.69
390 410 1.673920 ACACATGGACGCTTCGTTTTT 59.326 42.857 0.00 0.00 41.37 1.94
391 411 1.305201 ACACATGGACGCTTCGTTTT 58.695 45.000 0.00 0.00 41.37 2.43
392 412 1.305201 AACACATGGACGCTTCGTTT 58.695 45.000 0.00 0.00 41.37 3.60
393 413 1.263217 GAAACACATGGACGCTTCGTT 59.737 47.619 0.00 0.00 41.37 3.85
394 414 0.865769 GAAACACATGGACGCTTCGT 59.134 50.000 0.00 0.00 45.10 3.85
395 415 1.148310 AGAAACACATGGACGCTTCG 58.852 50.000 0.00 0.00 0.00 3.79
396 416 3.626028 AAAGAAACACATGGACGCTTC 57.374 42.857 0.00 0.00 0.00 3.86
397 417 4.385825 TCTAAAGAAACACATGGACGCTT 58.614 39.130 0.00 0.00 0.00 4.68
398 418 3.997021 CTCTAAAGAAACACATGGACGCT 59.003 43.478 0.00 0.00 0.00 5.07
399 419 3.994392 TCTCTAAAGAAACACATGGACGC 59.006 43.478 0.00 0.00 0.00 5.19
400 420 6.539649 TTTCTCTAAAGAAACACATGGACG 57.460 37.500 0.00 0.00 44.63 4.79
411 431 7.660208 AGCCGTTGATACTTTTTCTCTAAAGAA 59.340 33.333 0.00 0.00 39.78 2.52
412 432 7.117812 CAGCCGTTGATACTTTTTCTCTAAAGA 59.882 37.037 0.00 0.00 38.27 2.52
413 433 7.237173 CAGCCGTTGATACTTTTTCTCTAAAG 58.763 38.462 0.00 0.00 40.23 1.85
414 434 6.148811 CCAGCCGTTGATACTTTTTCTCTAAA 59.851 38.462 0.00 0.00 0.00 1.85
415 435 5.642063 CCAGCCGTTGATACTTTTTCTCTAA 59.358 40.000 0.00 0.00 0.00 2.10
416 436 5.175859 CCAGCCGTTGATACTTTTTCTCTA 58.824 41.667 0.00 0.00 0.00 2.43
417 437 4.003648 CCAGCCGTTGATACTTTTTCTCT 58.996 43.478 0.00 0.00 0.00 3.10
418 438 3.426292 GCCAGCCGTTGATACTTTTTCTC 60.426 47.826 0.00 0.00 0.00 2.87
419 439 2.488153 GCCAGCCGTTGATACTTTTTCT 59.512 45.455 0.00 0.00 0.00 2.52
420 440 2.488153 AGCCAGCCGTTGATACTTTTTC 59.512 45.455 0.00 0.00 0.00 2.29
421 441 2.488153 GAGCCAGCCGTTGATACTTTTT 59.512 45.455 0.00 0.00 0.00 1.94
422 442 2.084546 GAGCCAGCCGTTGATACTTTT 58.915 47.619 0.00 0.00 0.00 2.27
423 443 1.279271 AGAGCCAGCCGTTGATACTTT 59.721 47.619 0.00 0.00 0.00 2.66
424 444 0.905357 AGAGCCAGCCGTTGATACTT 59.095 50.000 0.00 0.00 0.00 2.24
425 445 0.176680 CAGAGCCAGCCGTTGATACT 59.823 55.000 0.00 0.00 0.00 2.12
426 446 0.108138 ACAGAGCCAGCCGTTGATAC 60.108 55.000 0.00 0.00 0.00 2.24
427 447 1.409064 CTACAGAGCCAGCCGTTGATA 59.591 52.381 0.00 0.00 0.00 2.15
428 448 0.176680 CTACAGAGCCAGCCGTTGAT 59.823 55.000 0.00 0.00 0.00 2.57
429 449 1.185618 ACTACAGAGCCAGCCGTTGA 61.186 55.000 0.00 0.00 0.00 3.18
430 450 0.530744 TACTACAGAGCCAGCCGTTG 59.469 55.000 0.00 0.00 0.00 4.10
431 451 1.486211 ATACTACAGAGCCAGCCGTT 58.514 50.000 0.00 0.00 0.00 4.44
432 452 2.359981 TATACTACAGAGCCAGCCGT 57.640 50.000 0.00 0.00 0.00 5.68
433 453 3.756963 TGTATATACTACAGAGCCAGCCG 59.243 47.826 13.89 0.00 0.00 5.52
434 454 4.523173 TGTGTATATACTACAGAGCCAGCC 59.477 45.833 13.89 0.00 0.00 4.85
435 455 5.473846 TCTGTGTATATACTACAGAGCCAGC 59.526 44.000 26.86 0.00 44.10 4.85
458 478 9.343539 GGGCCCATATCTTATATTCTTATGTTC 57.656 37.037 19.95 0.00 0.00 3.18
459 479 8.282256 GGGGCCCATATCTTATATTCTTATGTT 58.718 37.037 26.86 0.00 0.00 2.71
460 480 7.633391 AGGGGCCCATATCTTATATTCTTATGT 59.367 37.037 27.72 0.00 0.00 2.29
461 481 8.050316 AGGGGCCCATATCTTATATTCTTATG 57.950 38.462 27.72 0.00 0.00 1.90
462 482 7.295911 GGAGGGGCCCATATCTTATATTCTTAT 59.704 40.741 27.72 0.00 0.00 1.73
463 483 6.619852 GGAGGGGCCCATATCTTATATTCTTA 59.380 42.308 27.72 0.00 0.00 2.10
464 484 5.433381 GGAGGGGCCCATATCTTATATTCTT 59.567 44.000 27.72 0.00 0.00 2.52
465 485 4.978388 GGAGGGGCCCATATCTTATATTCT 59.022 45.833 27.72 6.01 0.00 2.40
466 486 5.311844 GGAGGGGCCCATATCTTATATTC 57.688 47.826 27.72 8.51 0.00 1.75
498 518 3.077556 AGTGCGACTGCCTAGGGG 61.078 66.667 11.72 0.00 41.78 4.79
499 519 1.608717 AAGAGTGCGACTGCCTAGGG 61.609 60.000 11.72 0.00 41.78 3.53
500 520 0.247736 AAAGAGTGCGACTGCCTAGG 59.752 55.000 3.67 3.67 41.78 3.02
501 521 1.354040 CAAAGAGTGCGACTGCCTAG 58.646 55.000 0.00 0.00 41.78 3.02
502 522 0.670546 GCAAAGAGTGCGACTGCCTA 60.671 55.000 0.00 0.00 45.10 3.93
503 523 1.963338 GCAAAGAGTGCGACTGCCT 60.963 57.895 0.00 0.00 45.10 4.75
504 524 2.558313 GCAAAGAGTGCGACTGCC 59.442 61.111 0.00 0.00 45.10 4.85
512 532 1.139853 CCTAGGCCTAGGCAAAGAGTG 59.860 57.143 39.72 17.49 45.36 3.51
513 533 1.501582 CCTAGGCCTAGGCAAAGAGT 58.498 55.000 39.72 13.61 45.36 3.24
527 547 2.123425 TACAGAGCCGGCCCTAGG 60.123 66.667 26.15 8.52 0.00 3.02
528 548 2.846652 CGTACAGAGCCGGCCCTAG 61.847 68.421 26.15 14.20 0.00 3.02
529 549 2.831742 CGTACAGAGCCGGCCCTA 60.832 66.667 26.15 0.00 0.00 3.53
531 551 4.814294 CACGTACAGAGCCGGCCC 62.814 72.222 26.15 12.96 0.00 5.80
534 554 4.415332 ACGCACGTACAGAGCCGG 62.415 66.667 0.00 0.00 32.61 6.13
535 555 2.517391 TACACGCACGTACAGAGCCG 62.517 60.000 0.00 0.00 32.61 5.52
536 556 0.797249 CTACACGCACGTACAGAGCC 60.797 60.000 0.00 0.00 32.61 4.70
537 557 0.109873 ACTACACGCACGTACAGAGC 60.110 55.000 9.41 0.00 0.00 4.09
538 558 1.069432 ACACTACACGCACGTACAGAG 60.069 52.381 9.41 5.14 0.00 3.35
539 559 0.946528 ACACTACACGCACGTACAGA 59.053 50.000 9.41 0.00 0.00 3.41
540 560 2.158254 TCTACACTACACGCACGTACAG 59.842 50.000 0.00 0.00 0.00 2.74
619 646 2.040714 TACGTAACTGCGTGTCTGTG 57.959 50.000 2.96 0.00 45.33 3.66
620 647 3.293311 AATACGTAACTGCGTGTCTGT 57.707 42.857 0.00 0.00 45.33 3.41
621 648 4.640805 AAAATACGTAACTGCGTGTCTG 57.359 40.909 0.00 0.00 45.33 3.51
648 2316 3.576550 TGCCCTTACCATTTTTCCTCAAC 59.423 43.478 0.00 0.00 0.00 3.18
660 2399 1.836999 ATCACTGCGTGCCCTTACCA 61.837 55.000 4.15 0.00 32.98 3.25
683 2423 7.870509 AACATCAAAGCTATGCTGATCTAAA 57.129 32.000 0.00 0.00 39.62 1.85
789 2721 0.604511 TCACCGCACTGACGTAGAGA 60.605 55.000 0.00 0.00 0.00 3.10
790 2722 0.454620 GTCACCGCACTGACGTAGAG 60.455 60.000 0.00 0.00 31.61 2.43
926 3378 1.564818 TCTATGGTCTGGACTCGGTCT 59.435 52.381 0.67 0.00 32.47 3.85
927 3379 1.677052 GTCTATGGTCTGGACTCGGTC 59.323 57.143 0.67 0.00 32.84 4.79
928 3380 1.685491 GGTCTATGGTCTGGACTCGGT 60.685 57.143 0.67 0.00 35.76 4.69
930 3390 1.678627 CAGGTCTATGGTCTGGACTCG 59.321 57.143 0.67 0.00 35.76 4.18
941 3401 1.478510 AGCGAGTGGTTCAGGTCTATG 59.521 52.381 0.00 0.00 0.00 2.23
977 3450 0.032130 TCGACGAGCTTTGCTGACTT 59.968 50.000 0.00 0.00 39.88 3.01
978 3451 0.244994 ATCGACGAGCTTTGCTGACT 59.755 50.000 3.01 0.00 39.88 3.41
979 3452 1.071605 AATCGACGAGCTTTGCTGAC 58.928 50.000 3.01 0.00 39.88 3.51
1027 3500 1.376942 CCTGGGAGAGCAGTGCTTG 60.377 63.158 20.80 5.75 39.88 4.01
1028 3501 1.845205 ACCTGGGAGAGCAGTGCTT 60.845 57.895 20.80 9.31 39.88 3.91
1291 3788 0.875908 CGATCATCATCCGCAACCGT 60.876 55.000 0.00 0.00 0.00 4.83
1326 3826 8.890718 AGCTCGATTATATTACTCGCTACATAA 58.109 33.333 0.00 0.00 32.62 1.90
1328 3828 7.065923 TCAGCTCGATTATATTACTCGCTACAT 59.934 37.037 0.00 0.00 32.62 2.29
1501 4023 3.403057 CACGTCGCCGTCCAACAG 61.403 66.667 0.00 0.00 46.28 3.16
1502 4024 3.902086 TCACGTCGCCGTCCAACA 61.902 61.111 0.00 0.00 46.28 3.33
1503 4025 3.400590 GTCACGTCGCCGTCCAAC 61.401 66.667 0.00 0.00 46.28 3.77
1667 4210 5.186409 TCCCACTAAACACACTCCTACATAC 59.814 44.000 0.00 0.00 0.00 2.39
1694 4256 0.035820 GACGTGGGCTAATTGGGACA 60.036 55.000 0.00 0.00 0.00 4.02
1722 4289 5.765182 CCGAAAATCCTAAGCCTATGAACAT 59.235 40.000 0.00 0.00 0.00 2.71
1781 4350 0.980754 TGCCGGAGATGCCCTTAAGA 60.981 55.000 5.05 0.00 0.00 2.10
1802 4374 1.338011 ACGCGGAAGGAAATTTACGGA 60.338 47.619 12.47 0.00 0.00 4.69
1830 4402 0.471211 TCCGTTGACTGGTCCCTCTT 60.471 55.000 0.00 0.00 0.00 2.85
1943 4521 4.491676 ACGATTTCGACCGGATTATATGG 58.508 43.478 9.46 0.00 43.02 2.74
1951 4529 1.452110 TGTAGACGATTTCGACCGGA 58.548 50.000 9.46 0.00 43.02 5.14
1956 4534 4.976224 TCCAGAATGTAGACGATTTCGA 57.024 40.909 7.01 0.00 43.02 3.71
2026 4609 2.732016 CGTGTCGTGGGAGTGGAA 59.268 61.111 0.00 0.00 0.00 3.53
2154 4737 2.420642 CAGCCGGACATATGGAAGATG 58.579 52.381 5.05 0.00 0.00 2.90
2185 4768 1.700186 AGAACCCTCTTTGTCACTCCC 59.300 52.381 0.00 0.00 0.00 4.30
2192 4775 4.803452 TCCATTTGAAGAACCCTCTTTGT 58.197 39.130 0.00 0.00 42.19 2.83
2247 4832 2.326529 ATCATGGGCCCCCGTCTAGA 62.327 60.000 22.27 6.83 39.42 2.43
2249 4834 2.146724 CATCATGGGCCCCCGTCTA 61.147 63.158 22.27 0.00 39.42 2.59
2301 4887 3.496131 CGCGTTGCCGGCTTGTAT 61.496 61.111 29.70 0.00 33.68 2.29
2343 4929 1.838073 CGGGAGGCTACCACCACTTT 61.838 60.000 17.87 0.00 35.94 2.66
2418 5004 2.590007 GGCTGCGCGGAGATCAAT 60.590 61.111 32.75 0.00 0.00 2.57
2461 5047 2.070783 CACGCCATACACCGTTAACTT 58.929 47.619 3.71 0.00 35.17 2.66
2467 5053 2.263540 GACCACGCCATACACCGT 59.736 61.111 0.00 0.00 38.35 4.83
2474 5060 4.314440 ACAGCACGACCACGCCAT 62.314 61.111 0.00 0.00 43.96 4.40
2475 5061 4.961511 GACAGCACGACCACGCCA 62.962 66.667 0.00 0.00 43.96 5.69
2477 5063 4.664677 AGGACAGCACGACCACGC 62.665 66.667 0.00 0.00 43.96 5.34
2478 5064 2.734723 CAGGACAGCACGACCACG 60.735 66.667 0.00 0.00 45.75 4.94
2479 5065 2.357517 CCAGGACAGCACGACCAC 60.358 66.667 0.00 0.00 30.94 4.16
2480 5066 2.523168 TCCAGGACAGCACGACCA 60.523 61.111 0.00 0.00 30.94 4.02
2481 5067 2.262915 CTCCAGGACAGCACGACC 59.737 66.667 0.00 0.00 0.00 4.79
2482 5068 2.433318 GCTCCAGGACAGCACGAC 60.433 66.667 0.00 0.00 36.82 4.34
2483 5069 2.506957 TTGCTCCAGGACAGCACGA 61.507 57.895 2.79 0.00 46.65 4.35
2484 5070 2.031012 TTGCTCCAGGACAGCACG 59.969 61.111 2.79 0.00 46.65 5.34
2485 5071 0.952984 GAGTTGCTCCAGGACAGCAC 60.953 60.000 2.79 0.25 46.65 4.40
2486 5072 1.372683 GAGTTGCTCCAGGACAGCA 59.627 57.895 0.00 0.00 45.32 4.41
2487 5073 1.739562 CGAGTTGCTCCAGGACAGC 60.740 63.158 0.00 0.00 37.40 4.40
2488 5074 0.389166 GACGAGTTGCTCCAGGACAG 60.389 60.000 0.00 0.00 0.00 3.51
2489 5075 1.666011 GACGAGTTGCTCCAGGACA 59.334 57.895 0.00 0.00 0.00 4.02
2490 5076 1.444553 CGACGAGTTGCTCCAGGAC 60.445 63.158 0.00 0.00 0.00 3.85
2491 5077 1.461091 AACGACGAGTTGCTCCAGGA 61.461 55.000 0.00 0.00 42.39 3.86
2492 5078 1.006102 AACGACGAGTTGCTCCAGG 60.006 57.895 0.00 0.00 42.39 4.45
2493 5079 1.009389 GGAACGACGAGTTGCTCCAG 61.009 60.000 0.00 0.00 46.05 3.86
2494 5080 1.006571 GGAACGACGAGTTGCTCCA 60.007 57.895 0.00 0.00 46.05 3.86
2495 5081 3.857909 GGAACGACGAGTTGCTCC 58.142 61.111 0.00 0.00 46.05 4.70
2499 5085 2.087009 GCGGAGGAACGACGAGTTG 61.087 63.158 0.00 0.00 44.35 3.16
2501 5087 4.099170 CGCGGAGGAACGACGAGT 62.099 66.667 0.00 0.00 36.18 4.18
2502 5088 3.720106 CTCGCGGAGGAACGACGAG 62.720 68.421 6.13 14.14 45.68 4.18
2503 5089 3.796443 CTCGCGGAGGAACGACGA 61.796 66.667 6.13 0.00 38.98 4.20
2504 5090 3.606065 AACTCGCGGAGGAACGACG 62.606 63.158 6.13 0.00 33.35 5.12
2505 5091 2.087009 CAACTCGCGGAGGAACGAC 61.087 63.158 6.13 0.00 33.35 4.34
2506 5092 2.257371 CAACTCGCGGAGGAACGA 59.743 61.111 6.13 0.00 33.35 3.85
2507 5093 2.809601 CCAACTCGCGGAGGAACG 60.810 66.667 6.13 0.00 33.35 3.95
2508 5094 3.119096 GCCAACTCGCGGAGGAAC 61.119 66.667 6.13 0.00 33.35 3.62
2509 5095 2.879233 AAGCCAACTCGCGGAGGAA 61.879 57.895 6.13 0.00 33.35 3.36
2510 5096 3.311110 AAGCCAACTCGCGGAGGA 61.311 61.111 6.13 0.00 33.35 3.71
2511 5097 3.121030 CAAGCCAACTCGCGGAGG 61.121 66.667 6.13 4.35 33.35 4.30
2512 5098 3.121030 CCAAGCCAACTCGCGGAG 61.121 66.667 6.13 5.03 35.52 4.63
2513 5099 3.589654 CTCCAAGCCAACTCGCGGA 62.590 63.158 6.13 0.00 0.00 5.54
2514 5100 3.121030 CTCCAAGCCAACTCGCGG 61.121 66.667 6.13 0.00 0.00 6.46
2515 5101 3.793144 GCTCCAAGCCAACTCGCG 61.793 66.667 0.00 0.00 34.48 5.87
2516 5102 2.669569 TGCTCCAAGCCAACTCGC 60.670 61.111 0.00 0.00 41.51 5.03
2517 5103 2.684843 GCTGCTCCAAGCCAACTCG 61.685 63.158 0.00 0.00 41.51 4.18
2518 5104 1.174712 TTGCTGCTCCAAGCCAACTC 61.175 55.000 0.00 0.00 41.51 3.01
2519 5105 1.152694 TTGCTGCTCCAAGCCAACT 60.153 52.632 0.00 0.00 41.51 3.16
2520 5106 1.288127 CTTGCTGCTCCAAGCCAAC 59.712 57.895 0.00 0.00 41.51 3.77
2521 5107 0.756442 AACTTGCTGCTCCAAGCCAA 60.756 50.000 14.23 0.00 44.66 4.52
2522 5108 1.152694 AACTTGCTGCTCCAAGCCA 60.153 52.632 14.23 0.00 44.66 4.75
2523 5109 1.288127 CAACTTGCTGCTCCAAGCC 59.712 57.895 14.23 0.00 44.66 4.35
2524 5110 1.372623 GCAACTTGCTGCTCCAAGC 60.373 57.895 14.23 2.20 44.66 4.01
2525 5111 4.959446 GCAACTTGCTGCTCCAAG 57.041 55.556 6.50 13.15 45.90 3.61
2534 5120 2.463876 GTGAAAGGTTCAGCAACTTGC 58.536 47.619 5.55 5.55 45.46 4.01
2542 5128 1.001378 CAAAGCCGGTGAAAGGTTCAG 60.001 52.381 1.90 0.00 41.01 3.02
2543 5129 1.028905 CAAAGCCGGTGAAAGGTTCA 58.971 50.000 1.90 0.00 37.33 3.18
2544 5130 1.266989 CTCAAAGCCGGTGAAAGGTTC 59.733 52.381 1.90 0.00 0.00 3.62
2545 5131 1.318576 CTCAAAGCCGGTGAAAGGTT 58.681 50.000 1.90 0.00 0.00 3.50
2546 5132 0.182775 ACTCAAAGCCGGTGAAAGGT 59.817 50.000 1.90 0.00 0.00 3.50
2547 5133 0.593128 CACTCAAAGCCGGTGAAAGG 59.407 55.000 1.90 0.00 33.32 3.11
2548 5134 0.593128 CCACTCAAAGCCGGTGAAAG 59.407 55.000 1.90 0.00 33.32 2.62
2549 5135 1.452145 GCCACTCAAAGCCGGTGAAA 61.452 55.000 1.90 0.00 33.32 2.69
2550 5136 1.896660 GCCACTCAAAGCCGGTGAA 60.897 57.895 1.90 0.00 33.32 3.18
2551 5137 2.281484 GCCACTCAAAGCCGGTGA 60.281 61.111 1.90 0.00 33.32 4.02
2552 5138 2.192861 TTGCCACTCAAAGCCGGTG 61.193 57.895 1.90 0.00 0.00 4.94
2553 5139 2.193536 GTTGCCACTCAAAGCCGGT 61.194 57.895 1.90 0.00 36.26 5.28
2554 5140 1.455383 AAGTTGCCACTCAAAGCCGG 61.455 55.000 0.00 0.00 36.26 6.13
2555 5141 0.318107 CAAGTTGCCACTCAAAGCCG 60.318 55.000 0.00 0.00 36.26 5.52
2556 5142 0.598419 GCAAGTTGCCACTCAAAGCC 60.598 55.000 17.36 0.00 37.42 4.35
2557 5143 0.386838 AGCAAGTTGCCACTCAAAGC 59.613 50.000 24.02 0.00 46.52 3.51
2558 5144 1.952296 AGAGCAAGTTGCCACTCAAAG 59.048 47.619 24.02 0.00 46.52 2.77
2559 5145 1.677576 CAGAGCAAGTTGCCACTCAAA 59.322 47.619 24.02 0.00 46.52 2.69
2560 5146 1.311859 CAGAGCAAGTTGCCACTCAA 58.688 50.000 24.02 0.00 46.52 3.02
2561 5147 0.181114 ACAGAGCAAGTTGCCACTCA 59.819 50.000 24.02 0.00 46.52 3.41
2562 5148 0.871057 GACAGAGCAAGTTGCCACTC 59.129 55.000 24.02 15.06 46.52 3.51
2563 5149 0.882042 CGACAGAGCAAGTTGCCACT 60.882 55.000 24.02 19.55 46.52 4.00
2564 5150 1.571460 CGACAGAGCAAGTTGCCAC 59.429 57.895 24.02 17.70 46.52 5.01
2565 5151 1.597854 CCGACAGAGCAAGTTGCCA 60.598 57.895 24.02 0.00 46.52 4.92
2566 5152 1.301716 TCCGACAGAGCAAGTTGCC 60.302 57.895 24.02 15.18 46.52 4.52
2567 5153 0.601311 AGTCCGACAGAGCAAGTTGC 60.601 55.000 20.44 20.44 45.46 4.17
2568 5154 1.528586 CAAGTCCGACAGAGCAAGTTG 59.471 52.381 0.40 0.00 0.00 3.16
2569 5155 1.541233 CCAAGTCCGACAGAGCAAGTT 60.541 52.381 0.40 0.00 0.00 2.66
2570 5156 0.034059 CCAAGTCCGACAGAGCAAGT 59.966 55.000 0.40 0.00 0.00 3.16
2571 5157 0.318441 TCCAAGTCCGACAGAGCAAG 59.682 55.000 0.40 0.00 0.00 4.01
2572 5158 0.318441 CTCCAAGTCCGACAGAGCAA 59.682 55.000 0.40 0.00 0.00 3.91
2573 5159 1.536073 CCTCCAAGTCCGACAGAGCA 61.536 60.000 0.40 0.00 0.00 4.26
2574 5160 1.216710 CCTCCAAGTCCGACAGAGC 59.783 63.158 0.40 0.00 0.00 4.09
2575 5161 1.746220 CTACCTCCAAGTCCGACAGAG 59.254 57.143 0.40 4.08 0.00 3.35
2576 5162 1.353358 TCTACCTCCAAGTCCGACAGA 59.647 52.381 0.40 0.00 0.00 3.41
2577 5163 1.746220 CTCTACCTCCAAGTCCGACAG 59.254 57.143 0.40 0.00 0.00 3.51
2578 5164 1.835494 CTCTACCTCCAAGTCCGACA 58.165 55.000 0.40 0.00 0.00 4.35
2579 5165 0.456628 GCTCTACCTCCAAGTCCGAC 59.543 60.000 0.00 0.00 0.00 4.79
2580 5166 0.039180 TGCTCTACCTCCAAGTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
2581 5167 0.457851 CTGCTCTACCTCCAAGTCCG 59.542 60.000 0.00 0.00 0.00 4.79
2582 5168 0.176910 GCTGCTCTACCTCCAAGTCC 59.823 60.000 0.00 0.00 0.00 3.85
2583 5169 0.179124 CGCTGCTCTACCTCCAAGTC 60.179 60.000 0.00 0.00 0.00 3.01
2584 5170 1.893786 CGCTGCTCTACCTCCAAGT 59.106 57.895 0.00 0.00 0.00 3.16
2585 5171 4.823276 CGCTGCTCTACCTCCAAG 57.177 61.111 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.