Multiple sequence alignment - TraesCS7A01G430000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G430000 chr7A 100.000 3423 0 0 1 3423 624806352 624809774 0.000000e+00 6322.0
1 TraesCS7A01G430000 chr7A 86.999 1823 131 44 985 2760 622373504 622371741 0.000000e+00 1956.0
2 TraesCS7A01G430000 chr7A 84.953 1276 131 37 952 2179 623323404 623322142 0.000000e+00 1236.0
3 TraesCS7A01G430000 chr7A 86.250 400 36 11 2812 3195 622371741 622371345 1.900000e-112 416.0
4 TraesCS7A01G430000 chr7A 91.030 301 22 3 2175 2473 623322071 623321774 5.320000e-108 401.0
5 TraesCS7A01G430000 chr7A 88.492 252 18 4 2465 2706 623321666 623321416 9.290000e-76 294.0
6 TraesCS7A01G430000 chr7A 83.600 250 20 7 2900 3128 623297967 623297718 7.440000e-52 215.0
7 TraesCS7A01G430000 chr7A 100.000 30 0 0 2885 2914 623320844 623320815 4.770000e-04 56.5
8 TraesCS7A01G430000 chr7D 90.134 2909 162 69 552 3390 541494312 541497165 0.000000e+00 3666.0
9 TraesCS7A01G430000 chr7D 85.597 1826 143 53 994 2760 540716451 540714687 0.000000e+00 1805.0
10 TraesCS7A01G430000 chr7D 84.789 1282 125 42 952 2179 540793566 540792301 0.000000e+00 1223.0
11 TraesCS7A01G430000 chr7D 88.398 543 26 8 2175 2706 540792230 540791714 1.350000e-173 619.0
12 TraesCS7A01G430000 chr7D 85.751 386 43 11 2812 3190 540714687 540714307 6.880000e-107 398.0
13 TraesCS7A01G430000 chr7D 78.723 141 22 7 2203 2336 421790101 421789962 1.690000e-13 87.9
14 TraesCS7A01G430000 chr7B 88.897 2891 194 67 552 3386 585486451 585489270 0.000000e+00 3443.0
15 TraesCS7A01G430000 chr7B 85.055 1626 134 53 985 2545 584036973 584035392 0.000000e+00 1555.0
16 TraesCS7A01G430000 chr7B 90.459 545 34 7 2175 2706 584269077 584268538 0.000000e+00 702.0
17 TraesCS7A01G430000 chr7B 86.740 543 49 13 1650 2179 584269680 584269148 1.770000e-162 582.0
18 TraesCS7A01G430000 chr7B 85.289 537 56 19 1078 1599 584270301 584269773 1.810000e-147 532.0
19 TraesCS7A01G430000 chr7B 86.534 401 33 12 2812 3195 584035231 584034835 4.080000e-114 422.0
20 TraesCS7A01G430000 chr7B 88.312 308 21 10 2901 3197 584262750 584262447 4.200000e-94 355.0
21 TraesCS7A01G430000 chr7B 90.909 154 13 1 2608 2760 584035384 584035231 4.480000e-49 206.0
22 TraesCS7A01G430000 chr5D 86.646 322 40 3 214 534 48308394 48308713 1.510000e-93 353.0
23 TraesCS7A01G430000 chr2D 85.714 322 42 4 215 534 435144908 435144589 1.520000e-88 337.0
24 TraesCS7A01G430000 chr2D 84.887 311 42 4 224 534 634330695 634331000 3.320000e-80 309.0
25 TraesCS7A01G430000 chr4D 85.000 320 47 1 215 534 6210976 6210658 1.180000e-84 324.0
26 TraesCS7A01G430000 chr3D 84.923 325 44 4 211 534 169426217 169426537 1.180000e-84 324.0
27 TraesCS7A01G430000 chr4B 84.062 320 49 2 215 534 76266933 76267250 1.190000e-79 307.0
28 TraesCS7A01G430000 chr3A 83.438 320 51 2 215 534 17604093 17603776 2.580000e-76 296.0
29 TraesCS7A01G430000 chr3A 83.438 320 50 3 215 534 202823202 202823518 9.290000e-76 294.0
30 TraesCS7A01G430000 chr1A 83.386 319 48 5 217 534 365784798 365784484 1.200000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G430000 chr7A 624806352 624809774 3422 False 6322.000000 6322 100.000000 1 3423 1 chr7A.!!$F1 3422
1 TraesCS7A01G430000 chr7A 622371345 622373504 2159 True 1186.000000 1956 86.624500 985 3195 2 chr7A.!!$R2 2210
2 TraesCS7A01G430000 chr7A 623320815 623323404 2589 True 496.875000 1236 91.118750 952 2914 4 chr7A.!!$R3 1962
3 TraesCS7A01G430000 chr7D 541494312 541497165 2853 False 3666.000000 3666 90.134000 552 3390 1 chr7D.!!$F1 2838
4 TraesCS7A01G430000 chr7D 540714307 540716451 2144 True 1101.500000 1805 85.674000 994 3190 2 chr7D.!!$R2 2196
5 TraesCS7A01G430000 chr7D 540791714 540793566 1852 True 921.000000 1223 86.593500 952 2706 2 chr7D.!!$R3 1754
6 TraesCS7A01G430000 chr7B 585486451 585489270 2819 False 3443.000000 3443 88.897000 552 3386 1 chr7B.!!$F1 2834
7 TraesCS7A01G430000 chr7B 584034835 584036973 2138 True 727.666667 1555 87.499333 985 3195 3 chr7B.!!$R2 2210
8 TraesCS7A01G430000 chr7B 584268538 584270301 1763 True 605.333333 702 87.496000 1078 2706 3 chr7B.!!$R3 1628


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.037046 GCTTGGGTTTTCAGGGCATG 60.037 55.0 0.0 0.0 0.00 4.06 F
336 337 0.106419 AGGCGGGTGTTTGGAAAGAA 60.106 50.0 0.0 0.0 0.00 2.52 F
448 449 0.111253 GGCCCCACTAATAGCAGCAT 59.889 55.0 0.0 0.0 0.00 3.79 F
641 642 0.392193 AGTCCAAAGCAGAGCCGATG 60.392 55.0 0.0 0.0 0.00 3.84 F
1889 2086 0.326264 AATTCTGCCGAGTTGCCTCT 59.674 50.0 0.0 0.0 35.43 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1501 0.689055 GTAAGGGTTGAGGAACGGGT 59.311 55.000 0.00 0.00 32.28 5.28 R
1524 1646 1.071471 CTTGAACCACCGGAGCTGT 59.929 57.895 9.46 0.00 0.00 4.40 R
1883 2079 1.274447 CTGTGTGTGATGAGAGAGGCA 59.726 52.381 0.00 0.00 0.00 4.75 R
2032 2229 1.878656 CGGCGAAGAGGTTGAGGTCT 61.879 60.000 0.00 0.00 0.00 3.85 R
3254 4164 0.905357 CAGTTTCTGTCCCGGGAGAT 59.095 55.000 27.72 3.56 0.00 2.75 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.588404 CATACTCGTTGTCGTGGATGC 59.412 52.381 2.80 0.00 42.24 3.91
21 22 0.885879 TACTCGTTGTCGTGGATGCT 59.114 50.000 0.00 0.00 38.33 3.79
22 23 0.667487 ACTCGTTGTCGTGGATGCTG 60.667 55.000 0.00 0.00 38.33 4.41
23 24 1.354337 CTCGTTGTCGTGGATGCTGG 61.354 60.000 0.00 0.00 38.33 4.85
24 25 2.390599 CGTTGTCGTGGATGCTGGG 61.391 63.158 0.00 0.00 0.00 4.45
25 26 2.359850 TTGTCGTGGATGCTGGGC 60.360 61.111 0.00 0.00 0.00 5.36
26 27 2.894257 TTGTCGTGGATGCTGGGCT 61.894 57.895 0.00 0.00 0.00 5.19
27 28 1.549243 TTGTCGTGGATGCTGGGCTA 61.549 55.000 0.00 0.00 0.00 3.93
28 29 1.227380 GTCGTGGATGCTGGGCTAG 60.227 63.158 0.00 0.00 0.00 3.42
39 40 3.546009 GGGCTAGCCGACCATGTA 58.454 61.111 27.24 0.00 42.15 2.29
40 41 1.367840 GGGCTAGCCGACCATGTAG 59.632 63.158 27.24 0.00 42.15 2.74
41 42 1.301009 GGCTAGCCGACCATGTAGC 60.301 63.158 20.16 2.89 37.72 3.58
42 43 1.441729 GCTAGCCGACCATGTAGCA 59.558 57.895 2.29 0.00 38.23 3.49
43 44 0.598680 GCTAGCCGACCATGTAGCAG 60.599 60.000 2.29 0.00 38.23 4.24
44 45 0.747255 CTAGCCGACCATGTAGCAGT 59.253 55.000 0.00 0.00 0.00 4.40
45 46 1.954382 CTAGCCGACCATGTAGCAGTA 59.046 52.381 0.00 0.00 0.00 2.74
46 47 1.414158 AGCCGACCATGTAGCAGTAT 58.586 50.000 0.00 0.00 0.00 2.12
47 48 1.341531 AGCCGACCATGTAGCAGTATC 59.658 52.381 0.00 0.00 0.00 2.24
48 49 1.068588 GCCGACCATGTAGCAGTATCA 59.931 52.381 0.00 0.00 0.00 2.15
49 50 2.743938 CCGACCATGTAGCAGTATCAC 58.256 52.381 0.00 0.00 0.00 3.06
50 51 2.385315 CGACCATGTAGCAGTATCACG 58.615 52.381 0.00 0.00 0.00 4.35
51 52 2.032924 CGACCATGTAGCAGTATCACGA 59.967 50.000 0.00 0.00 0.00 4.35
52 53 3.304726 CGACCATGTAGCAGTATCACGAT 60.305 47.826 0.00 0.00 0.00 3.73
53 54 4.083484 CGACCATGTAGCAGTATCACGATA 60.083 45.833 0.00 0.00 0.00 2.92
54 55 5.562113 CGACCATGTAGCAGTATCACGATAA 60.562 44.000 0.00 0.00 0.00 1.75
55 56 5.529791 ACCATGTAGCAGTATCACGATAAC 58.470 41.667 0.00 0.00 0.00 1.89
56 57 4.923871 CCATGTAGCAGTATCACGATAACC 59.076 45.833 0.00 0.00 0.00 2.85
57 58 5.508994 CCATGTAGCAGTATCACGATAACCA 60.509 44.000 0.00 0.00 0.00 3.67
58 59 4.928601 TGTAGCAGTATCACGATAACCAC 58.071 43.478 0.00 0.00 0.00 4.16
59 60 4.643334 TGTAGCAGTATCACGATAACCACT 59.357 41.667 0.00 0.00 0.00 4.00
60 61 4.046938 AGCAGTATCACGATAACCACTG 57.953 45.455 0.00 4.12 0.00 3.66
61 62 3.699538 AGCAGTATCACGATAACCACTGA 59.300 43.478 10.48 0.00 0.00 3.41
62 63 4.045104 GCAGTATCACGATAACCACTGAG 58.955 47.826 10.48 0.00 0.00 3.35
63 64 4.611943 CAGTATCACGATAACCACTGAGG 58.388 47.826 0.00 0.00 45.67 3.86
64 65 2.604046 ATCACGATAACCACTGAGGC 57.396 50.000 0.00 0.00 43.14 4.70
65 66 0.535335 TCACGATAACCACTGAGGCC 59.465 55.000 0.00 0.00 43.14 5.19
66 67 0.462047 CACGATAACCACTGAGGCCC 60.462 60.000 0.00 0.00 43.14 5.80
67 68 0.907704 ACGATAACCACTGAGGCCCA 60.908 55.000 0.00 0.00 43.14 5.36
68 69 0.462047 CGATAACCACTGAGGCCCAC 60.462 60.000 0.00 0.00 43.14 4.61
69 70 0.107165 GATAACCACTGAGGCCCACC 60.107 60.000 0.00 0.00 43.14 4.61
70 71 1.910580 ATAACCACTGAGGCCCACCG 61.911 60.000 0.00 0.00 43.14 4.94
75 76 4.415150 CTGAGGCCCACCGCACAT 62.415 66.667 0.00 0.00 41.32 3.21
76 77 4.720902 TGAGGCCCACCGCACATG 62.721 66.667 0.00 0.00 41.32 3.21
85 86 4.776322 CCGCACATGCCGGGAGAA 62.776 66.667 15.53 0.00 37.91 2.87
86 87 3.197790 CGCACATGCCGGGAGAAG 61.198 66.667 2.18 0.00 37.91 2.85
87 88 2.825836 GCACATGCCGGGAGAAGG 60.826 66.667 2.18 0.00 34.31 3.46
88 89 2.671070 CACATGCCGGGAGAAGGT 59.329 61.111 2.18 0.00 0.00 3.50
89 90 1.904771 CACATGCCGGGAGAAGGTA 59.095 57.895 2.18 0.00 0.00 3.08
90 91 0.462047 CACATGCCGGGAGAAGGTAC 60.462 60.000 2.18 0.00 0.00 3.34
92 93 0.105039 CATGCCGGGAGAAGGTACTC 59.895 60.000 2.18 0.00 38.49 2.59
93 94 0.325296 ATGCCGGGAGAAGGTACTCA 60.325 55.000 2.18 0.00 38.49 3.41
94 95 0.325296 TGCCGGGAGAAGGTACTCAT 60.325 55.000 2.18 0.00 38.49 2.90
95 96 0.389757 GCCGGGAGAAGGTACTCATC 59.610 60.000 2.18 0.00 38.49 2.92
96 97 0.669077 CCGGGAGAAGGTACTCATCG 59.331 60.000 0.00 0.00 38.49 3.84
97 98 1.390565 CGGGAGAAGGTACTCATCGT 58.609 55.000 0.00 0.00 38.49 3.73
98 99 1.334243 CGGGAGAAGGTACTCATCGTC 59.666 57.143 0.00 0.00 38.49 4.20
99 100 1.682323 GGGAGAAGGTACTCATCGTCC 59.318 57.143 0.00 0.00 38.49 4.79
100 101 1.334243 GGAGAAGGTACTCATCGTCCG 59.666 57.143 0.00 0.00 38.49 4.79
101 102 0.739561 AGAAGGTACTCATCGTCCGC 59.260 55.000 0.00 0.00 38.49 5.54
102 103 0.454600 GAAGGTACTCATCGTCCGCA 59.545 55.000 0.00 0.00 38.49 5.69
103 104 0.892755 AAGGTACTCATCGTCCGCAA 59.107 50.000 0.00 0.00 38.49 4.85
104 105 0.456221 AGGTACTCATCGTCCGCAAG 59.544 55.000 0.00 0.00 0.00 4.01
105 106 1.146358 GGTACTCATCGTCCGCAAGC 61.146 60.000 0.00 0.00 0.00 4.01
106 107 0.457853 GTACTCATCGTCCGCAAGCA 60.458 55.000 0.00 0.00 0.00 3.91
107 108 0.457853 TACTCATCGTCCGCAAGCAC 60.458 55.000 0.00 0.00 0.00 4.40
108 109 2.434185 TCATCGTCCGCAAGCACC 60.434 61.111 0.00 0.00 0.00 5.01
109 110 3.853330 CATCGTCCGCAAGCACCG 61.853 66.667 0.00 0.00 0.00 4.94
118 119 4.680237 CAAGCACCGCTCGGACCA 62.680 66.667 15.95 0.00 38.25 4.02
119 120 4.379243 AAGCACCGCTCGGACCAG 62.379 66.667 15.95 3.27 38.25 4.00
124 125 4.697756 CCGCTCGGACCAGCCAAA 62.698 66.667 1.35 0.00 35.84 3.28
125 126 3.423154 CGCTCGGACCAGCCAAAC 61.423 66.667 9.47 0.00 35.84 2.93
126 127 3.056328 GCTCGGACCAGCCAAACC 61.056 66.667 4.99 0.00 35.94 3.27
127 128 2.359975 CTCGGACCAGCCAAACCC 60.360 66.667 0.00 0.00 35.94 4.11
128 129 3.920093 CTCGGACCAGCCAAACCCC 62.920 68.421 0.00 0.00 35.94 4.95
129 130 4.278513 CGGACCAGCCAAACCCCA 62.279 66.667 0.00 0.00 35.94 4.96
130 131 2.200092 GGACCAGCCAAACCCCAA 59.800 61.111 0.00 0.00 36.34 4.12
131 132 2.207229 GGACCAGCCAAACCCCAAC 61.207 63.158 0.00 0.00 36.34 3.77
132 133 1.152546 GACCAGCCAAACCCCAACT 60.153 57.895 0.00 0.00 0.00 3.16
133 134 0.111639 GACCAGCCAAACCCCAACTA 59.888 55.000 0.00 0.00 0.00 2.24
134 135 0.178973 ACCAGCCAAACCCCAACTAC 60.179 55.000 0.00 0.00 0.00 2.73
135 136 0.898326 CCAGCCAAACCCCAACTACC 60.898 60.000 0.00 0.00 0.00 3.18
136 137 0.898326 CAGCCAAACCCCAACTACCC 60.898 60.000 0.00 0.00 0.00 3.69
137 138 1.974875 GCCAAACCCCAACTACCCG 60.975 63.158 0.00 0.00 0.00 5.28
138 139 1.303806 CCAAACCCCAACTACCCGG 60.304 63.158 0.00 0.00 0.00 5.73
139 140 1.762471 CAAACCCCAACTACCCGGA 59.238 57.895 0.73 0.00 0.00 5.14
140 141 0.607217 CAAACCCCAACTACCCGGAC 60.607 60.000 0.73 0.00 0.00 4.79
141 142 2.115734 AAACCCCAACTACCCGGACG 62.116 60.000 0.73 0.00 0.00 4.79
142 143 2.999063 CCCCAACTACCCGGACGT 60.999 66.667 0.73 0.00 0.00 4.34
143 144 2.575461 CCCAACTACCCGGACGTC 59.425 66.667 7.13 7.13 0.00 4.34
144 145 2.277591 CCCAACTACCCGGACGTCA 61.278 63.158 18.91 0.00 0.00 4.35
145 146 1.610554 CCCAACTACCCGGACGTCAT 61.611 60.000 18.91 1.91 0.00 3.06
146 147 0.179119 CCAACTACCCGGACGTCATC 60.179 60.000 18.91 0.00 0.00 2.92
147 148 0.524816 CAACTACCCGGACGTCATCG 60.525 60.000 18.91 12.48 43.34 3.84
148 149 0.677731 AACTACCCGGACGTCATCGA 60.678 55.000 18.91 0.00 40.62 3.59
149 150 1.354506 CTACCCGGACGTCATCGAC 59.645 63.158 18.91 0.00 40.62 4.20
176 177 3.162154 GGCGGGGTAGGGGAGAAG 61.162 72.222 0.00 0.00 0.00 2.85
177 178 3.162154 GCGGGGTAGGGGAGAAGG 61.162 72.222 0.00 0.00 0.00 3.46
178 179 2.694305 CGGGGTAGGGGAGAAGGA 59.306 66.667 0.00 0.00 0.00 3.36
179 180 1.457831 CGGGGTAGGGGAGAAGGAG 60.458 68.421 0.00 0.00 0.00 3.69
180 181 1.074395 GGGGTAGGGGAGAAGGAGG 60.074 68.421 0.00 0.00 0.00 4.30
181 182 1.710972 GGGTAGGGGAGAAGGAGGT 59.289 63.158 0.00 0.00 0.00 3.85
182 183 0.691413 GGGTAGGGGAGAAGGAGGTG 60.691 65.000 0.00 0.00 0.00 4.00
183 184 0.691413 GGTAGGGGAGAAGGAGGTGG 60.691 65.000 0.00 0.00 0.00 4.61
184 185 0.691413 GTAGGGGAGAAGGAGGTGGG 60.691 65.000 0.00 0.00 0.00 4.61
185 186 1.898190 TAGGGGAGAAGGAGGTGGGG 61.898 65.000 0.00 0.00 0.00 4.96
186 187 2.692741 GGGAGAAGGAGGTGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
202 203 4.803426 GGGACGCAGCTCCGACAG 62.803 72.222 2.80 0.00 0.00 3.51
210 211 2.032681 GCTCCGACAGCTTGGGTT 59.967 61.111 0.00 0.00 45.83 4.11
211 212 1.600916 GCTCCGACAGCTTGGGTTT 60.601 57.895 0.00 0.00 45.83 3.27
212 213 1.172812 GCTCCGACAGCTTGGGTTTT 61.173 55.000 0.00 0.00 45.83 2.43
213 214 0.875059 CTCCGACAGCTTGGGTTTTC 59.125 55.000 0.00 0.00 0.00 2.29
214 215 0.181587 TCCGACAGCTTGGGTTTTCA 59.818 50.000 0.00 0.00 0.00 2.69
215 216 0.593128 CCGACAGCTTGGGTTTTCAG 59.407 55.000 0.00 0.00 0.00 3.02
216 217 0.593128 CGACAGCTTGGGTTTTCAGG 59.407 55.000 0.00 0.00 0.00 3.86
217 218 0.961753 GACAGCTTGGGTTTTCAGGG 59.038 55.000 0.00 0.00 0.00 4.45
218 219 1.115326 ACAGCTTGGGTTTTCAGGGC 61.115 55.000 0.00 0.00 0.00 5.19
219 220 1.114722 CAGCTTGGGTTTTCAGGGCA 61.115 55.000 0.00 0.00 0.00 5.36
220 221 0.178924 AGCTTGGGTTTTCAGGGCAT 60.179 50.000 0.00 0.00 0.00 4.40
221 222 0.037046 GCTTGGGTTTTCAGGGCATG 60.037 55.000 0.00 0.00 0.00 4.06
222 223 1.631405 CTTGGGTTTTCAGGGCATGA 58.369 50.000 0.00 0.00 35.62 3.07
223 224 1.273327 CTTGGGTTTTCAGGGCATGAC 59.727 52.381 0.00 0.00 37.77 3.06
224 225 0.541764 TGGGTTTTCAGGGCATGACC 60.542 55.000 10.65 10.65 37.77 4.02
225 226 0.541764 GGGTTTTCAGGGCATGACCA 60.542 55.000 22.78 0.00 42.05 4.02
226 227 1.337118 GGTTTTCAGGGCATGACCAA 58.663 50.000 22.78 2.58 42.05 3.67
227 228 1.901833 GGTTTTCAGGGCATGACCAAT 59.098 47.619 22.78 0.00 42.05 3.16
228 229 2.354003 GGTTTTCAGGGCATGACCAATG 60.354 50.000 22.78 10.87 42.05 2.82
237 238 0.963962 CATGACCAATGCATAGCCCC 59.036 55.000 0.00 0.00 0.00 5.80
238 239 0.557238 ATGACCAATGCATAGCCCCA 59.443 50.000 0.00 0.00 0.00 4.96
239 240 0.106569 TGACCAATGCATAGCCCCAG 60.107 55.000 0.00 0.00 0.00 4.45
240 241 0.825010 GACCAATGCATAGCCCCAGG 60.825 60.000 0.00 0.00 0.00 4.45
241 242 1.532316 CCAATGCATAGCCCCAGGG 60.532 63.158 0.00 0.00 38.57 4.45
242 243 1.231068 CAATGCATAGCCCCAGGGT 59.769 57.895 4.22 0.00 37.65 4.34
243 244 1.111116 CAATGCATAGCCCCAGGGTG 61.111 60.000 4.22 0.00 37.65 4.61
244 245 1.288508 AATGCATAGCCCCAGGGTGA 61.289 55.000 4.22 0.00 37.65 4.02
245 246 1.070127 ATGCATAGCCCCAGGGTGAT 61.070 55.000 4.22 0.00 37.65 3.06
246 247 1.228367 GCATAGCCCCAGGGTGATG 60.228 63.158 4.22 9.26 37.65 3.07
247 248 1.228367 CATAGCCCCAGGGTGATGC 60.228 63.158 4.22 0.00 37.65 3.91
248 249 2.464403 ATAGCCCCAGGGTGATGCC 61.464 63.158 4.22 0.00 37.65 4.40
268 269 0.243907 CCGTAGGCCACATAGGATCG 59.756 60.000 5.01 0.00 46.14 3.69
269 270 0.243907 CGTAGGCCACATAGGATCGG 59.756 60.000 5.01 0.00 41.22 4.18
270 271 1.629043 GTAGGCCACATAGGATCGGA 58.371 55.000 5.01 0.00 41.22 4.55
271 272 2.180276 GTAGGCCACATAGGATCGGAT 58.820 52.381 5.01 0.00 41.22 4.18
272 273 0.979665 AGGCCACATAGGATCGGATG 59.020 55.000 5.01 4.38 41.22 3.51
273 274 0.687354 GGCCACATAGGATCGGATGT 59.313 55.000 0.00 5.51 41.22 3.06
274 275 1.338200 GGCCACATAGGATCGGATGTC 60.338 57.143 0.00 0.29 41.22 3.06
275 276 1.344438 GCCACATAGGATCGGATGTCA 59.656 52.381 7.87 0.00 41.22 3.58
276 277 2.611473 GCCACATAGGATCGGATGTCAG 60.611 54.545 7.87 5.05 41.22 3.51
277 278 2.028658 CCACATAGGATCGGATGTCAGG 60.029 54.545 7.87 4.92 41.22 3.86
278 279 2.893489 CACATAGGATCGGATGTCAGGA 59.107 50.000 7.87 0.00 34.01 3.86
279 280 3.321968 CACATAGGATCGGATGTCAGGAA 59.678 47.826 7.87 0.00 34.01 3.36
280 281 3.967326 ACATAGGATCGGATGTCAGGAAA 59.033 43.478 0.00 0.00 30.32 3.13
281 282 4.408921 ACATAGGATCGGATGTCAGGAAAA 59.591 41.667 0.00 0.00 30.32 2.29
282 283 3.550437 AGGATCGGATGTCAGGAAAAG 57.450 47.619 0.00 0.00 0.00 2.27
283 284 2.840651 AGGATCGGATGTCAGGAAAAGT 59.159 45.455 0.00 0.00 0.00 2.66
284 285 4.030913 AGGATCGGATGTCAGGAAAAGTA 58.969 43.478 0.00 0.00 0.00 2.24
285 286 4.100189 AGGATCGGATGTCAGGAAAAGTAG 59.900 45.833 0.00 0.00 0.00 2.57
286 287 3.887621 TCGGATGTCAGGAAAAGTAGG 57.112 47.619 0.00 0.00 0.00 3.18
287 288 3.170717 TCGGATGTCAGGAAAAGTAGGT 58.829 45.455 0.00 0.00 0.00 3.08
288 289 3.581332 TCGGATGTCAGGAAAAGTAGGTT 59.419 43.478 0.00 0.00 0.00 3.50
289 290 3.933332 CGGATGTCAGGAAAAGTAGGTTC 59.067 47.826 0.00 0.00 0.00 3.62
290 291 4.562757 CGGATGTCAGGAAAAGTAGGTTCA 60.563 45.833 0.00 0.00 0.00 3.18
291 292 4.938226 GGATGTCAGGAAAAGTAGGTTCAG 59.062 45.833 0.00 0.00 0.00 3.02
292 293 5.280011 GGATGTCAGGAAAAGTAGGTTCAGA 60.280 44.000 0.00 0.00 0.00 3.27
293 294 5.825593 TGTCAGGAAAAGTAGGTTCAGAT 57.174 39.130 0.00 0.00 0.00 2.90
294 295 5.551233 TGTCAGGAAAAGTAGGTTCAGATG 58.449 41.667 0.00 0.00 0.00 2.90
295 296 4.938226 GTCAGGAAAAGTAGGTTCAGATGG 59.062 45.833 0.00 0.00 0.00 3.51
296 297 4.844085 TCAGGAAAAGTAGGTTCAGATGGA 59.156 41.667 0.00 0.00 0.00 3.41
297 298 5.046304 TCAGGAAAAGTAGGTTCAGATGGAG 60.046 44.000 0.00 0.00 0.00 3.86
298 299 3.942115 GGAAAAGTAGGTTCAGATGGAGC 59.058 47.826 0.00 0.00 0.00 4.70
299 300 4.565652 GGAAAAGTAGGTTCAGATGGAGCA 60.566 45.833 0.00 0.00 0.00 4.26
300 301 3.902881 AAGTAGGTTCAGATGGAGCAG 57.097 47.619 0.00 0.00 0.00 4.24
301 302 1.484240 AGTAGGTTCAGATGGAGCAGC 59.516 52.381 0.00 0.00 0.00 5.25
302 303 0.461548 TAGGTTCAGATGGAGCAGCG 59.538 55.000 0.00 0.00 0.00 5.18
303 304 1.817099 GGTTCAGATGGAGCAGCGG 60.817 63.158 0.00 0.00 0.00 5.52
304 305 1.817099 GTTCAGATGGAGCAGCGGG 60.817 63.158 0.00 0.00 0.00 6.13
305 306 1.989508 TTCAGATGGAGCAGCGGGA 60.990 57.895 0.00 0.00 0.00 5.14
306 307 1.340399 TTCAGATGGAGCAGCGGGAT 61.340 55.000 0.00 0.00 0.00 3.85
307 308 1.301558 CAGATGGAGCAGCGGGATC 60.302 63.158 0.00 0.00 0.00 3.36
312 313 3.819188 GAGCAGCGGGATCCTTTG 58.181 61.111 12.58 8.83 0.00 2.77
313 314 2.439156 AGCAGCGGGATCCTTTGC 60.439 61.111 20.72 20.72 33.01 3.68
314 315 2.751436 GCAGCGGGATCCTTTGCA 60.751 61.111 22.31 0.00 33.06 4.08
315 316 2.768492 GCAGCGGGATCCTTTGCAG 61.768 63.158 22.31 16.75 33.06 4.41
316 317 2.117156 CAGCGGGATCCTTTGCAGG 61.117 63.158 20.86 11.84 42.50 4.85
323 324 4.033776 TCCTTTGCAGGAGGCGGG 62.034 66.667 12.16 0.00 45.20 6.13
329 330 3.365265 GCAGGAGGCGGGTGTTTG 61.365 66.667 0.00 0.00 0.00 2.93
330 331 2.672996 CAGGAGGCGGGTGTTTGG 60.673 66.667 0.00 0.00 0.00 3.28
331 332 2.852075 AGGAGGCGGGTGTTTGGA 60.852 61.111 0.00 0.00 0.00 3.53
332 333 2.114411 GGAGGCGGGTGTTTGGAA 59.886 61.111 0.00 0.00 0.00 3.53
333 334 1.529713 GGAGGCGGGTGTTTGGAAA 60.530 57.895 0.00 0.00 0.00 3.13
334 335 1.524008 GGAGGCGGGTGTTTGGAAAG 61.524 60.000 0.00 0.00 0.00 2.62
335 336 0.536460 GAGGCGGGTGTTTGGAAAGA 60.536 55.000 0.00 0.00 0.00 2.52
336 337 0.106419 AGGCGGGTGTTTGGAAAGAA 60.106 50.000 0.00 0.00 0.00 2.52
337 338 0.747852 GGCGGGTGTTTGGAAAGAAA 59.252 50.000 0.00 0.00 0.00 2.52
338 339 1.137282 GGCGGGTGTTTGGAAAGAAAA 59.863 47.619 0.00 0.00 0.00 2.29
339 340 2.418884 GGCGGGTGTTTGGAAAGAAAAA 60.419 45.455 0.00 0.00 0.00 1.94
340 341 2.863740 GCGGGTGTTTGGAAAGAAAAAG 59.136 45.455 0.00 0.00 0.00 2.27
341 342 3.677700 GCGGGTGTTTGGAAAGAAAAAGT 60.678 43.478 0.00 0.00 0.00 2.66
342 343 3.862845 CGGGTGTTTGGAAAGAAAAAGTG 59.137 43.478 0.00 0.00 0.00 3.16
343 344 4.619628 CGGGTGTTTGGAAAGAAAAAGTGT 60.620 41.667 0.00 0.00 0.00 3.55
344 345 4.629634 GGGTGTTTGGAAAGAAAAAGTGTG 59.370 41.667 0.00 0.00 0.00 3.82
345 346 4.629634 GGTGTTTGGAAAGAAAAAGTGTGG 59.370 41.667 0.00 0.00 0.00 4.17
346 347 5.234752 GTGTTTGGAAAGAAAAAGTGTGGT 58.765 37.500 0.00 0.00 0.00 4.16
347 348 5.347635 GTGTTTGGAAAGAAAAAGTGTGGTC 59.652 40.000 0.00 0.00 0.00 4.02
348 349 5.245075 TGTTTGGAAAGAAAAAGTGTGGTCT 59.755 36.000 0.00 0.00 0.00 3.85
349 350 4.981806 TGGAAAGAAAAAGTGTGGTCTG 57.018 40.909 0.00 0.00 0.00 3.51
350 351 3.699038 TGGAAAGAAAAAGTGTGGTCTGG 59.301 43.478 0.00 0.00 0.00 3.86
351 352 3.699538 GGAAAGAAAAAGTGTGGTCTGGT 59.300 43.478 0.00 0.00 0.00 4.00
352 353 4.440112 GGAAAGAAAAAGTGTGGTCTGGTG 60.440 45.833 0.00 0.00 0.00 4.17
353 354 2.024414 AGAAAAAGTGTGGTCTGGTGC 58.976 47.619 0.00 0.00 0.00 5.01
354 355 0.738389 AAAAAGTGTGGTCTGGTGCG 59.262 50.000 0.00 0.00 0.00 5.34
355 356 0.393808 AAAAGTGTGGTCTGGTGCGT 60.394 50.000 0.00 0.00 0.00 5.24
356 357 0.466543 AAAGTGTGGTCTGGTGCGTA 59.533 50.000 0.00 0.00 0.00 4.42
357 358 0.466543 AAGTGTGGTCTGGTGCGTAA 59.533 50.000 0.00 0.00 0.00 3.18
358 359 0.466543 AGTGTGGTCTGGTGCGTAAA 59.533 50.000 0.00 0.00 0.00 2.01
359 360 0.865769 GTGTGGTCTGGTGCGTAAAG 59.134 55.000 0.00 0.00 0.00 1.85
377 378 7.226772 GCGTAAAGCTGAAAATGTTAAAATGG 58.773 34.615 0.00 0.00 44.04 3.16
378 379 7.095816 GCGTAAAGCTGAAAATGTTAAAATGGT 60.096 33.333 0.00 0.00 44.04 3.55
379 380 8.213812 CGTAAAGCTGAAAATGTTAAAATGGTG 58.786 33.333 0.00 0.00 0.00 4.17
380 381 9.255304 GTAAAGCTGAAAATGTTAAAATGGTGA 57.745 29.630 0.00 0.00 0.00 4.02
381 382 7.951530 AAGCTGAAAATGTTAAAATGGTGAG 57.048 32.000 0.00 0.00 0.00 3.51
382 383 7.054491 AGCTGAAAATGTTAAAATGGTGAGT 57.946 32.000 0.00 0.00 0.00 3.41
383 384 8.177119 AGCTGAAAATGTTAAAATGGTGAGTA 57.823 30.769 0.00 0.00 0.00 2.59
384 385 8.299570 AGCTGAAAATGTTAAAATGGTGAGTAG 58.700 33.333 0.00 0.00 0.00 2.57
385 386 8.296713 GCTGAAAATGTTAAAATGGTGAGTAGA 58.703 33.333 0.00 0.00 0.00 2.59
386 387 9.831737 CTGAAAATGTTAAAATGGTGAGTAGAG 57.168 33.333 0.00 0.00 0.00 2.43
387 388 9.567776 TGAAAATGTTAAAATGGTGAGTAGAGA 57.432 29.630 0.00 0.00 0.00 3.10
390 391 6.985188 TGTTAAAATGGTGAGTAGAGATGC 57.015 37.500 0.00 0.00 0.00 3.91
391 392 6.472016 TGTTAAAATGGTGAGTAGAGATGCA 58.528 36.000 0.00 0.00 0.00 3.96
392 393 6.371548 TGTTAAAATGGTGAGTAGAGATGCAC 59.628 38.462 0.00 0.00 0.00 4.57
393 394 2.879002 ATGGTGAGTAGAGATGCACG 57.121 50.000 0.00 0.00 32.24 5.34
394 395 1.545841 TGGTGAGTAGAGATGCACGT 58.454 50.000 0.00 0.00 32.24 4.49
395 396 1.202348 TGGTGAGTAGAGATGCACGTG 59.798 52.381 12.28 12.28 32.24 4.49
396 397 1.202582 GGTGAGTAGAGATGCACGTGT 59.797 52.381 18.38 0.00 32.24 4.49
397 398 2.254459 GTGAGTAGAGATGCACGTGTG 58.746 52.381 18.38 0.00 0.00 3.82
398 399 1.202348 TGAGTAGAGATGCACGTGTGG 59.798 52.381 18.38 0.00 0.00 4.17
399 400 1.202582 GAGTAGAGATGCACGTGTGGT 59.797 52.381 18.38 3.13 0.00 4.16
407 408 3.138625 CACGTGTGGTGGGAGTCT 58.861 61.111 7.58 0.00 43.16 3.24
408 409 1.445942 CACGTGTGGTGGGAGTCTT 59.554 57.895 7.58 0.00 43.16 3.01
409 410 0.179056 CACGTGTGGTGGGAGTCTTT 60.179 55.000 7.58 0.00 43.16 2.52
410 411 1.069513 CACGTGTGGTGGGAGTCTTTA 59.930 52.381 7.58 0.00 43.16 1.85
411 412 1.975680 ACGTGTGGTGGGAGTCTTTAT 59.024 47.619 0.00 0.00 0.00 1.40
412 413 2.370849 ACGTGTGGTGGGAGTCTTTATT 59.629 45.455 0.00 0.00 0.00 1.40
413 414 3.181448 ACGTGTGGTGGGAGTCTTTATTT 60.181 43.478 0.00 0.00 0.00 1.40
414 415 3.818773 CGTGTGGTGGGAGTCTTTATTTT 59.181 43.478 0.00 0.00 0.00 1.82
415 416 4.083484 CGTGTGGTGGGAGTCTTTATTTTC 60.083 45.833 0.00 0.00 0.00 2.29
416 417 5.070685 GTGTGGTGGGAGTCTTTATTTTCT 58.929 41.667 0.00 0.00 0.00 2.52
417 418 6.235664 GTGTGGTGGGAGTCTTTATTTTCTA 58.764 40.000 0.00 0.00 0.00 2.10
418 419 6.884836 GTGTGGTGGGAGTCTTTATTTTCTAT 59.115 38.462 0.00 0.00 0.00 1.98
419 420 7.393515 GTGTGGTGGGAGTCTTTATTTTCTATT 59.606 37.037 0.00 0.00 0.00 1.73
420 421 7.610305 TGTGGTGGGAGTCTTTATTTTCTATTC 59.390 37.037 0.00 0.00 0.00 1.75
421 422 7.829706 GTGGTGGGAGTCTTTATTTTCTATTCT 59.170 37.037 0.00 0.00 0.00 2.40
422 423 8.390921 TGGTGGGAGTCTTTATTTTCTATTCTT 58.609 33.333 0.00 0.00 0.00 2.52
423 424 9.244292 GGTGGGAGTCTTTATTTTCTATTCTTT 57.756 33.333 0.00 0.00 0.00 2.52
432 433 9.741647 CTTTATTTTCTATTCTTTGATGAGGCC 57.258 33.333 0.00 0.00 0.00 5.19
433 434 6.721704 ATTTTCTATTCTTTGATGAGGCCC 57.278 37.500 0.00 0.00 0.00 5.80
434 435 3.864789 TCTATTCTTTGATGAGGCCCC 57.135 47.619 0.00 0.00 0.00 5.80
435 436 3.122480 TCTATTCTTTGATGAGGCCCCA 58.878 45.455 0.00 0.00 0.00 4.96
436 437 2.149973 ATTCTTTGATGAGGCCCCAC 57.850 50.000 0.00 0.00 0.00 4.61
437 438 1.075601 TTCTTTGATGAGGCCCCACT 58.924 50.000 0.00 0.00 0.00 4.00
438 439 1.965414 TCTTTGATGAGGCCCCACTA 58.035 50.000 0.00 0.00 0.00 2.74
439 440 2.274542 TCTTTGATGAGGCCCCACTAA 58.725 47.619 0.00 0.00 0.00 2.24
440 441 2.852449 TCTTTGATGAGGCCCCACTAAT 59.148 45.455 0.00 0.00 0.00 1.73
441 442 4.044308 TCTTTGATGAGGCCCCACTAATA 58.956 43.478 0.00 0.00 0.00 0.98
442 443 4.103153 TCTTTGATGAGGCCCCACTAATAG 59.897 45.833 0.00 0.00 0.00 1.73
443 444 1.699634 TGATGAGGCCCCACTAATAGC 59.300 52.381 0.00 0.00 0.00 2.97
444 445 1.699634 GATGAGGCCCCACTAATAGCA 59.300 52.381 0.00 0.00 0.00 3.49
445 446 1.131638 TGAGGCCCCACTAATAGCAG 58.868 55.000 0.00 0.00 0.00 4.24
446 447 0.250510 GAGGCCCCACTAATAGCAGC 60.251 60.000 0.00 0.00 0.00 5.25
447 448 0.988145 AGGCCCCACTAATAGCAGCA 60.988 55.000 0.00 0.00 0.00 4.41
448 449 0.111253 GGCCCCACTAATAGCAGCAT 59.889 55.000 0.00 0.00 0.00 3.79
449 450 1.351017 GGCCCCACTAATAGCAGCATA 59.649 52.381 0.00 0.00 0.00 3.14
450 451 2.427506 GCCCCACTAATAGCAGCATAC 58.572 52.381 0.00 0.00 0.00 2.39
451 452 2.224523 GCCCCACTAATAGCAGCATACA 60.225 50.000 0.00 0.00 0.00 2.29
452 453 3.560025 GCCCCACTAATAGCAGCATACAT 60.560 47.826 0.00 0.00 0.00 2.29
453 454 4.655963 CCCCACTAATAGCAGCATACATT 58.344 43.478 0.00 0.00 0.00 2.71
454 455 4.456911 CCCCACTAATAGCAGCATACATTG 59.543 45.833 0.00 0.00 0.00 2.82
455 456 4.456911 CCCACTAATAGCAGCATACATTGG 59.543 45.833 0.00 0.00 0.00 3.16
456 457 4.456911 CCACTAATAGCAGCATACATTGGG 59.543 45.833 0.00 0.00 0.00 4.12
457 458 4.456911 CACTAATAGCAGCATACATTGGGG 59.543 45.833 0.00 0.00 0.00 4.96
458 459 3.882102 AATAGCAGCATACATTGGGGA 57.118 42.857 0.00 0.00 0.00 4.81
459 460 2.936919 TAGCAGCATACATTGGGGAG 57.063 50.000 0.00 0.00 0.00 4.30
460 461 1.216064 AGCAGCATACATTGGGGAGA 58.784 50.000 0.00 0.00 0.00 3.71
461 462 1.565759 AGCAGCATACATTGGGGAGAA 59.434 47.619 0.00 0.00 0.00 2.87
462 463 2.025037 AGCAGCATACATTGGGGAGAAA 60.025 45.455 0.00 0.00 0.00 2.52
463 464 2.760092 GCAGCATACATTGGGGAGAAAA 59.240 45.455 0.00 0.00 0.00 2.29
464 465 3.195396 GCAGCATACATTGGGGAGAAAAA 59.805 43.478 0.00 0.00 0.00 1.94
489 490 9.988815 AAATCGATATAGATGCTTCAAACTACT 57.011 29.630 0.00 0.00 0.00 2.57
490 491 9.988815 AATCGATATAGATGCTTCAAACTACTT 57.011 29.630 0.00 0.00 0.00 2.24
491 492 9.988815 ATCGATATAGATGCTTCAAACTACTTT 57.011 29.630 0.00 0.00 0.00 2.66
492 493 9.817809 TCGATATAGATGCTTCAAACTACTTTT 57.182 29.630 2.07 0.00 0.00 2.27
520 521 6.997239 ATGATGCACATGTATCCATATGTC 57.003 37.500 0.00 0.00 34.57 3.06
521 522 5.867330 TGATGCACATGTATCCATATGTCA 58.133 37.500 0.00 0.00 34.57 3.58
522 523 5.702209 TGATGCACATGTATCCATATGTCAC 59.298 40.000 0.00 0.00 34.57 3.67
523 524 4.388485 TGCACATGTATCCATATGTCACC 58.612 43.478 0.00 0.00 34.57 4.02
524 525 4.141528 TGCACATGTATCCATATGTCACCA 60.142 41.667 0.00 0.00 34.57 4.17
525 526 5.005740 GCACATGTATCCATATGTCACCAT 58.994 41.667 0.00 0.00 34.57 3.55
526 527 5.474532 GCACATGTATCCATATGTCACCATT 59.525 40.000 0.00 0.00 34.57 3.16
527 528 6.569035 GCACATGTATCCATATGTCACCATTG 60.569 42.308 0.00 2.73 34.57 2.82
528 529 6.487668 CACATGTATCCATATGTCACCATTGT 59.512 38.462 0.00 0.00 34.57 2.71
529 530 7.661027 CACATGTATCCATATGTCACCATTGTA 59.339 37.037 0.00 0.00 34.57 2.41
530 531 7.661437 ACATGTATCCATATGTCACCATTGTAC 59.339 37.037 0.00 0.00 31.44 2.90
531 532 7.130681 TGTATCCATATGTCACCATTGTACA 57.869 36.000 1.24 0.00 32.29 2.90
532 533 7.744733 TGTATCCATATGTCACCATTGTACAT 58.255 34.615 0.00 0.00 37.58 2.29
533 534 7.661027 TGTATCCATATGTCACCATTGTACATG 59.339 37.037 0.00 0.00 35.54 3.21
534 535 6.000246 TCCATATGTCACCATTGTACATGT 58.000 37.500 2.69 2.69 35.54 3.21
535 536 5.821995 TCCATATGTCACCATTGTACATGTG 59.178 40.000 9.11 12.17 40.41 3.21
536 537 5.821995 CCATATGTCACCATTGTACATGTGA 59.178 40.000 9.11 15.44 42.15 3.58
537 538 6.487668 CCATATGTCACCATTGTACATGTGAT 59.512 38.462 19.85 11.62 42.15 3.06
538 539 7.308169 CCATATGTCACCATTGTACATGTGATC 60.308 40.741 19.85 15.29 42.15 2.92
539 540 5.164620 TGTCACCATTGTACATGTGATCT 57.835 39.130 19.85 0.00 0.00 2.75
540 541 4.937015 TGTCACCATTGTACATGTGATCTG 59.063 41.667 19.85 1.09 0.00 2.90
541 542 4.937620 GTCACCATTGTACATGTGATCTGT 59.062 41.667 19.85 0.00 0.00 3.41
542 543 6.106003 GTCACCATTGTACATGTGATCTGTA 58.894 40.000 19.85 0.00 0.00 2.74
543 544 6.763135 GTCACCATTGTACATGTGATCTGTAT 59.237 38.462 19.85 0.00 32.13 2.29
544 545 6.986231 TCACCATTGTACATGTGATCTGTATC 59.014 38.462 9.11 0.00 32.13 2.24
545 546 6.203530 CACCATTGTACATGTGATCTGTATCC 59.796 42.308 9.11 0.00 32.13 2.59
546 547 6.126796 ACCATTGTACATGTGATCTGTATCCA 60.127 38.462 9.11 0.00 32.13 3.41
547 548 6.938596 CCATTGTACATGTGATCTGTATCCAT 59.061 38.462 9.11 0.00 32.13 3.41
548 549 8.096414 CCATTGTACATGTGATCTGTATCCATA 58.904 37.037 9.11 0.00 32.13 2.74
549 550 9.662947 CATTGTACATGTGATCTGTATCCATAT 57.337 33.333 9.11 0.00 32.13 1.78
550 551 9.662947 ATTGTACATGTGATCTGTATCCATATG 57.337 33.333 9.11 0.00 32.13 1.78
599 600 5.509716 TGCTGATATGATGCCTTTCTTTG 57.490 39.130 0.00 0.00 0.00 2.77
601 602 6.121590 TGCTGATATGATGCCTTTCTTTGTA 58.878 36.000 0.00 0.00 0.00 2.41
621 622 0.888619 TCTGTGGTCACGATGACTCC 59.111 55.000 14.77 8.42 46.19 3.85
641 642 0.392193 AGTCCAAAGCAGAGCCGATG 60.392 55.000 0.00 0.00 0.00 3.84
678 679 1.152798 GACCGGATCCGACCCTACT 60.153 63.158 35.42 7.92 42.83 2.57
740 741 2.976840 GCGGCATGGCACTCGAAAA 61.977 57.895 20.37 0.00 0.00 2.29
741 742 1.578926 CGGCATGGCACTCGAAAAA 59.421 52.632 20.37 0.00 0.00 1.94
742 743 0.454957 CGGCATGGCACTCGAAAAAG 60.455 55.000 20.37 0.00 0.00 2.27
743 744 0.881118 GGCATGGCACTCGAAAAAGA 59.119 50.000 15.47 0.00 0.00 2.52
744 745 1.269448 GGCATGGCACTCGAAAAAGAA 59.731 47.619 15.47 0.00 0.00 2.52
745 746 2.288152 GGCATGGCACTCGAAAAAGAAA 60.288 45.455 15.47 0.00 0.00 2.52
746 747 2.982470 GCATGGCACTCGAAAAAGAAAG 59.018 45.455 0.00 0.00 0.00 2.62
747 748 3.304659 GCATGGCACTCGAAAAAGAAAGA 60.305 43.478 0.00 0.00 0.00 2.52
748 749 4.792704 GCATGGCACTCGAAAAAGAAAGAA 60.793 41.667 0.00 0.00 0.00 2.52
749 750 5.464168 CATGGCACTCGAAAAAGAAAGAAT 58.536 37.500 0.00 0.00 0.00 2.40
750 751 4.858935 TGGCACTCGAAAAAGAAAGAATG 58.141 39.130 0.00 0.00 0.00 2.67
751 752 4.338118 TGGCACTCGAAAAAGAAAGAATGT 59.662 37.500 0.00 0.00 0.00 2.71
752 753 4.912187 GGCACTCGAAAAAGAAAGAATGTC 59.088 41.667 0.00 0.00 0.00 3.06
753 754 5.278022 GGCACTCGAAAAAGAAAGAATGTCT 60.278 40.000 0.00 0.00 30.22 3.41
754 755 6.202226 GCACTCGAAAAAGAAAGAATGTCTT 58.798 36.000 0.00 0.00 46.98 3.01
755 756 6.358294 GCACTCGAAAAAGAAAGAATGTCTTC 59.642 38.462 0.00 0.00 43.31 2.87
756 757 6.853362 CACTCGAAAAAGAAAGAATGTCTTCC 59.147 38.462 0.00 0.00 43.31 3.46
757 758 6.768381 ACTCGAAAAAGAAAGAATGTCTTCCT 59.232 34.615 0.00 0.00 43.31 3.36
758 759 7.283354 ACTCGAAAAAGAAAGAATGTCTTCCTT 59.717 33.333 0.00 0.00 43.31 3.36
759 760 7.996385 TCGAAAAAGAAAGAATGTCTTCCTTT 58.004 30.769 0.00 0.00 43.31 3.11
760 761 9.116067 TCGAAAAAGAAAGAATGTCTTCCTTTA 57.884 29.630 3.10 0.00 43.31 1.85
761 762 9.730420 CGAAAAAGAAAGAATGTCTTCCTTTAA 57.270 29.630 3.10 0.00 43.31 1.52
765 766 9.593565 AAAGAAAGAATGTCTTCCTTTAATCCT 57.406 29.630 0.90 0.00 43.31 3.24
766 767 8.572855 AGAAAGAATGTCTTCCTTTAATCCTG 57.427 34.615 0.00 0.00 35.27 3.86
767 768 8.166726 AGAAAGAATGTCTTCCTTTAATCCTGT 58.833 33.333 0.00 0.00 35.27 4.00
768 769 7.929941 AAGAATGTCTTCCTTTAATCCTGTC 57.070 36.000 0.00 0.00 28.99 3.51
790 791 7.958674 TGTCAAAAAGAAAGAATGTTTTTCCG 58.041 30.769 0.00 0.00 35.62 4.30
791 792 6.899771 GTCAAAAAGAAAGAATGTTTTTCCGC 59.100 34.615 0.00 0.00 35.62 5.54
889 890 4.570663 CTCTAGAACGCCCGGCCG 62.571 72.222 21.04 21.04 0.00 6.13
908 939 1.808891 CGGGTATAAAAGGAGGCCGTG 60.809 57.143 0.00 0.00 0.00 4.94
935 966 2.677902 GCAGGAACTCATCGACCATTCA 60.678 50.000 0.00 0.00 34.60 2.57
936 967 3.193263 CAGGAACTCATCGACCATTCAG 58.807 50.000 0.00 0.00 34.60 3.02
937 968 2.834549 AGGAACTCATCGACCATTCAGT 59.165 45.455 0.00 0.00 0.00 3.41
938 969 4.023980 AGGAACTCATCGACCATTCAGTA 58.976 43.478 0.00 0.00 0.00 2.74
939 970 4.098654 AGGAACTCATCGACCATTCAGTAG 59.901 45.833 0.00 0.00 0.00 2.57
940 971 3.444703 ACTCATCGACCATTCAGTAGC 57.555 47.619 0.00 0.00 0.00 3.58
945 976 2.656002 TCGACCATTCAGTAGCTAGCT 58.344 47.619 23.12 23.12 0.00 3.32
1010 1054 1.678728 CCGTTTCTGCATGGCTTCCTA 60.679 52.381 0.00 0.00 0.00 2.94
1042 1098 1.373497 CTCCTCGTCGCTGCTTTGT 60.373 57.895 0.00 0.00 0.00 2.83
1043 1099 0.946221 CTCCTCGTCGCTGCTTTGTT 60.946 55.000 0.00 0.00 0.00 2.83
1044 1100 0.531974 TCCTCGTCGCTGCTTTGTTT 60.532 50.000 0.00 0.00 0.00 2.83
1305 1381 3.894257 TCTGCTTCAGAGTGAACGG 57.106 52.632 0.00 0.00 35.39 4.44
1524 1646 1.203313 ACCTCCAACTCCCTCAAGCTA 60.203 52.381 0.00 0.00 0.00 3.32
1615 1761 2.905075 TCCCACATTATCTCAACGCAG 58.095 47.619 0.00 0.00 0.00 5.18
1619 1765 3.308053 CCACATTATCTCAACGCAGACTG 59.692 47.826 0.00 0.00 0.00 3.51
1621 1767 4.389992 CACATTATCTCAACGCAGACTGTT 59.610 41.667 3.99 0.00 0.00 3.16
1624 1775 5.591643 TTATCTCAACGCAGACTGTTTTC 57.408 39.130 3.99 0.00 0.00 2.29
1625 1776 1.858458 TCTCAACGCAGACTGTTTTCG 59.142 47.619 3.99 1.47 0.00 3.46
1883 2079 2.304761 TGGGAACTAATTCTGCCGAGTT 59.695 45.455 0.00 0.00 34.98 3.01
1885 2081 2.096013 GGAACTAATTCTGCCGAGTTGC 59.904 50.000 0.00 0.00 34.98 4.17
1886 2082 1.739067 ACTAATTCTGCCGAGTTGCC 58.261 50.000 0.00 0.00 0.00 4.52
1887 2083 1.279271 ACTAATTCTGCCGAGTTGCCT 59.721 47.619 0.00 0.00 0.00 4.75
1889 2086 0.326264 AATTCTGCCGAGTTGCCTCT 59.674 50.000 0.00 0.00 35.43 3.69
1891 2088 1.188219 TTCTGCCGAGTTGCCTCTCT 61.188 55.000 4.25 0.00 35.43 3.10
1897 2094 1.470632 CCGAGTTGCCTCTCTCATCAC 60.471 57.143 4.25 0.00 35.43 3.06
1898 2095 1.203287 CGAGTTGCCTCTCTCATCACA 59.797 52.381 4.25 0.00 35.43 3.58
1981 2178 1.076632 CCTCCCGAGCTACCTCACT 60.077 63.158 0.00 0.00 38.00 3.41
1990 2187 1.910722 CTACCTCACTGCCATGGCT 59.089 57.895 35.53 15.87 42.51 4.75
2032 2229 3.551496 CTCCACGGCCTGCCTCAAA 62.551 63.158 6.60 0.00 0.00 2.69
2599 3029 3.931907 TTAGCATGTTGAGCAGGGTAT 57.068 42.857 0.00 0.00 40.74 2.73
2606 3036 5.670485 CATGTTGAGCAGGGTATACAGTTA 58.330 41.667 5.01 0.00 0.00 2.24
2666 3097 6.148150 GGATTTTACGTGTTGATCTGGTACAA 59.852 38.462 0.00 0.00 38.70 2.41
2719 3153 7.364522 CTTGCAAAGTTACAGCATAAGAGTA 57.635 36.000 0.00 0.00 39.70 2.59
2722 3156 5.220681 GCAAAGTTACAGCATAAGAGTAGCC 60.221 44.000 0.00 0.00 0.00 3.93
2820 3715 4.380973 CGAGCTTTGATCCTTGAGAGTACA 60.381 45.833 0.00 0.00 0.00 2.90
3123 4018 5.013495 ACCAAATGACAGATCTCAGAGGAAA 59.987 40.000 0.00 0.00 0.00 3.13
3152 4060 7.151308 TGATGAAATGCGGAAAAGTACAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
3156 4064 9.482627 TGAAATGCGGAAAAGTACAAAATATTT 57.517 25.926 0.00 0.00 0.00 1.40
3213 4123 7.711846 ACATACTAAGACAACAACAATTTGCA 58.288 30.769 0.00 0.00 36.00 4.08
3226 4136 3.642848 ACAATTTGCACCTGAATCCAAGT 59.357 39.130 0.00 0.00 0.00 3.16
3254 4164 6.934645 CAGAAACCAACAGAAGATAACCAGTA 59.065 38.462 0.00 0.00 0.00 2.74
3340 4252 7.099764 CCATCACCACTCCAGTATCATAATAC 58.900 42.308 0.00 0.00 38.45 1.89
3390 4302 2.161609 GGCCAGAAGTATTGTTCCAACG 59.838 50.000 0.00 0.00 0.00 4.10
3391 4303 3.071479 GCCAGAAGTATTGTTCCAACGA 58.929 45.455 0.00 0.00 0.00 3.85
3392 4304 3.689649 GCCAGAAGTATTGTTCCAACGAT 59.310 43.478 0.00 0.00 36.92 3.73
3393 4305 4.156008 GCCAGAAGTATTGTTCCAACGATT 59.844 41.667 0.00 0.00 34.84 3.34
3394 4306 5.353123 GCCAGAAGTATTGTTCCAACGATTA 59.647 40.000 0.00 0.00 34.84 1.75
3395 4307 6.128117 GCCAGAAGTATTGTTCCAACGATTAA 60.128 38.462 0.00 0.00 34.84 1.40
3396 4308 7.415206 GCCAGAAGTATTGTTCCAACGATTAAT 60.415 37.037 0.00 0.00 34.84 1.40
3397 4309 8.122952 CCAGAAGTATTGTTCCAACGATTAATC 58.877 37.037 5.30 5.30 34.84 1.75
3398 4310 8.883731 CAGAAGTATTGTTCCAACGATTAATCT 58.116 33.333 13.45 0.00 34.84 2.40
3399 4311 9.449719 AGAAGTATTGTTCCAACGATTAATCTT 57.550 29.630 13.45 0.97 34.84 2.40
3400 4312 9.490663 GAAGTATTGTTCCAACGATTAATCTTG 57.509 33.333 13.45 14.53 34.84 3.02
3401 4313 8.561738 AGTATTGTTCCAACGATTAATCTTGT 57.438 30.769 13.45 2.30 34.84 3.16
3402 4314 9.010029 AGTATTGTTCCAACGATTAATCTTGTT 57.990 29.630 13.45 8.16 34.84 2.83
3403 4315 9.274065 GTATTGTTCCAACGATTAATCTTGTTC 57.726 33.333 13.45 9.11 34.84 3.18
3404 4316 6.249035 TGTTCCAACGATTAATCTTGTTCC 57.751 37.500 13.45 7.08 0.00 3.62
3405 4317 5.765677 TGTTCCAACGATTAATCTTGTTCCA 59.234 36.000 13.45 8.94 0.00 3.53
3406 4318 6.263392 TGTTCCAACGATTAATCTTGTTCCAA 59.737 34.615 13.45 3.93 0.00 3.53
3407 4319 6.249035 TCCAACGATTAATCTTGTTCCAAC 57.751 37.500 13.45 0.00 0.00 3.77
3408 4320 6.001460 TCCAACGATTAATCTTGTTCCAACT 58.999 36.000 13.45 0.00 0.00 3.16
3409 4321 7.162761 TCCAACGATTAATCTTGTTCCAACTA 58.837 34.615 13.45 0.00 0.00 2.24
3410 4322 7.333423 TCCAACGATTAATCTTGTTCCAACTAG 59.667 37.037 13.45 0.00 33.88 2.57
3411 4323 7.119262 CCAACGATTAATCTTGTTCCAACTAGT 59.881 37.037 13.45 0.00 34.18 2.57
3412 4324 7.829378 ACGATTAATCTTGTTCCAACTAGTC 57.171 36.000 13.45 0.00 34.18 2.59
3413 4325 6.817140 ACGATTAATCTTGTTCCAACTAGTCC 59.183 38.462 13.45 0.00 34.18 3.85
3414 4326 6.816640 CGATTAATCTTGTTCCAACTAGTCCA 59.183 38.462 13.45 0.00 34.18 4.02
3415 4327 7.495934 CGATTAATCTTGTTCCAACTAGTCCAT 59.504 37.037 13.45 0.00 34.18 3.41
3416 4328 9.178758 GATTAATCTTGTTCCAACTAGTCCATT 57.821 33.333 8.27 0.00 34.18 3.16
3417 4329 6.824305 AATCTTGTTCCAACTAGTCCATTG 57.176 37.500 0.00 0.00 34.18 2.82
3418 4330 4.651778 TCTTGTTCCAACTAGTCCATTGG 58.348 43.478 5.12 5.12 45.78 3.16
3419 4331 4.104102 TCTTGTTCCAACTAGTCCATTGGT 59.896 41.667 10.44 0.00 44.86 3.67
3420 4332 4.447138 TGTTCCAACTAGTCCATTGGTT 57.553 40.909 10.44 0.00 44.86 3.67
3421 4333 4.141287 TGTTCCAACTAGTCCATTGGTTG 58.859 43.478 10.44 0.00 44.86 3.77
3422 4334 4.142038 GTTCCAACTAGTCCATTGGTTGT 58.858 43.478 10.44 0.00 44.86 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.588404 GCATCCACGACAACGAGTATG 59.412 52.381 0.00 0.00 42.66 2.39
1 2 1.476891 AGCATCCACGACAACGAGTAT 59.523 47.619 0.00 0.00 42.66 2.12
2 3 0.885879 AGCATCCACGACAACGAGTA 59.114 50.000 0.00 0.00 42.66 2.59
3 4 0.667487 CAGCATCCACGACAACGAGT 60.667 55.000 0.00 0.00 42.66 4.18
4 5 1.354337 CCAGCATCCACGACAACGAG 61.354 60.000 0.00 0.00 42.66 4.18
5 6 1.374125 CCAGCATCCACGACAACGA 60.374 57.895 0.00 0.00 42.66 3.85
6 7 2.390599 CCCAGCATCCACGACAACG 61.391 63.158 0.00 0.00 45.75 4.10
7 8 2.690778 GCCCAGCATCCACGACAAC 61.691 63.158 0.00 0.00 0.00 3.32
8 9 1.549243 TAGCCCAGCATCCACGACAA 61.549 55.000 0.00 0.00 0.00 3.18
9 10 1.960040 CTAGCCCAGCATCCACGACA 61.960 60.000 0.00 0.00 0.00 4.35
10 11 1.227380 CTAGCCCAGCATCCACGAC 60.227 63.158 0.00 0.00 0.00 4.34
11 12 3.220222 CTAGCCCAGCATCCACGA 58.780 61.111 0.00 0.00 0.00 4.35
20 21 1.399744 TACATGGTCGGCTAGCCCAG 61.400 60.000 28.09 15.15 0.00 4.45
21 22 1.382009 TACATGGTCGGCTAGCCCA 60.382 57.895 28.09 19.99 0.00 5.36
22 23 1.367840 CTACATGGTCGGCTAGCCC 59.632 63.158 28.09 14.73 0.00 5.19
23 24 1.301009 GCTACATGGTCGGCTAGCC 60.301 63.158 24.75 24.75 0.00 3.93
24 25 0.598680 CTGCTACATGGTCGGCTAGC 60.599 60.000 6.04 6.04 33.56 3.42
25 26 0.747255 ACTGCTACATGGTCGGCTAG 59.253 55.000 0.00 0.00 0.00 3.42
26 27 2.061509 TACTGCTACATGGTCGGCTA 57.938 50.000 0.00 0.00 0.00 3.93
27 28 1.341531 GATACTGCTACATGGTCGGCT 59.658 52.381 0.00 0.00 0.00 5.52
28 29 1.068588 TGATACTGCTACATGGTCGGC 59.931 52.381 0.00 0.00 0.00 5.54
29 30 2.743938 GTGATACTGCTACATGGTCGG 58.256 52.381 0.00 0.00 0.00 4.79
30 31 2.032924 TCGTGATACTGCTACATGGTCG 59.967 50.000 0.00 0.00 0.00 4.79
31 32 3.710326 TCGTGATACTGCTACATGGTC 57.290 47.619 0.00 0.00 0.00 4.02
32 33 5.509163 GGTTATCGTGATACTGCTACATGGT 60.509 44.000 0.00 0.00 0.00 3.55
33 34 4.923871 GGTTATCGTGATACTGCTACATGG 59.076 45.833 0.00 0.00 0.00 3.66
34 35 5.402568 GTGGTTATCGTGATACTGCTACATG 59.597 44.000 0.00 0.00 0.00 3.21
35 36 5.302059 AGTGGTTATCGTGATACTGCTACAT 59.698 40.000 0.00 0.00 0.00 2.29
36 37 4.643334 AGTGGTTATCGTGATACTGCTACA 59.357 41.667 0.00 0.00 0.00 2.74
37 38 4.976731 CAGTGGTTATCGTGATACTGCTAC 59.023 45.833 0.00 0.00 0.00 3.58
38 39 4.885325 TCAGTGGTTATCGTGATACTGCTA 59.115 41.667 0.00 0.00 0.00 3.49
39 40 3.699538 TCAGTGGTTATCGTGATACTGCT 59.300 43.478 0.00 0.00 0.00 4.24
40 41 4.041740 TCAGTGGTTATCGTGATACTGC 57.958 45.455 0.00 0.00 0.00 4.40
41 42 4.611943 CCTCAGTGGTTATCGTGATACTG 58.388 47.826 0.00 0.00 0.00 2.74
42 43 3.068307 GCCTCAGTGGTTATCGTGATACT 59.932 47.826 0.00 0.00 38.35 2.12
43 44 3.381949 GCCTCAGTGGTTATCGTGATAC 58.618 50.000 0.00 0.00 38.35 2.24
44 45 2.364324 GGCCTCAGTGGTTATCGTGATA 59.636 50.000 0.00 0.00 38.35 2.15
45 46 1.139058 GGCCTCAGTGGTTATCGTGAT 59.861 52.381 0.00 0.00 38.35 3.06
46 47 0.535335 GGCCTCAGTGGTTATCGTGA 59.465 55.000 0.00 0.00 38.35 4.35
47 48 0.462047 GGGCCTCAGTGGTTATCGTG 60.462 60.000 0.84 0.00 38.35 4.35
48 49 0.907704 TGGGCCTCAGTGGTTATCGT 60.908 55.000 4.53 0.00 38.35 3.73
49 50 0.462047 GTGGGCCTCAGTGGTTATCG 60.462 60.000 4.53 0.00 38.35 2.92
50 51 0.107165 GGTGGGCCTCAGTGGTTATC 60.107 60.000 4.53 0.00 38.35 1.75
51 52 1.910580 CGGTGGGCCTCAGTGGTTAT 61.911 60.000 4.53 0.00 38.35 1.89
52 53 2.589157 CGGTGGGCCTCAGTGGTTA 61.589 63.158 4.53 0.00 38.35 2.85
53 54 3.953775 CGGTGGGCCTCAGTGGTT 61.954 66.667 4.53 0.00 38.35 3.67
58 59 4.415150 ATGTGCGGTGGGCCTCAG 62.415 66.667 4.53 2.60 42.61 3.35
59 60 4.720902 CATGTGCGGTGGGCCTCA 62.721 66.667 4.53 0.00 42.61 3.86
68 69 4.776322 TTCTCCCGGCATGTGCGG 62.776 66.667 0.00 5.66 43.26 5.69
69 70 3.197790 CTTCTCCCGGCATGTGCG 61.198 66.667 0.00 0.00 43.26 5.34
70 71 2.252072 TACCTTCTCCCGGCATGTGC 62.252 60.000 0.00 0.00 41.14 4.57
71 72 0.462047 GTACCTTCTCCCGGCATGTG 60.462 60.000 0.00 0.00 0.00 3.21
72 73 0.617820 AGTACCTTCTCCCGGCATGT 60.618 55.000 0.00 0.00 0.00 3.21
73 74 0.105039 GAGTACCTTCTCCCGGCATG 59.895 60.000 0.00 0.00 0.00 4.06
74 75 0.325296 TGAGTACCTTCTCCCGGCAT 60.325 55.000 0.00 0.00 33.93 4.40
75 76 0.325296 ATGAGTACCTTCTCCCGGCA 60.325 55.000 0.00 0.00 33.93 5.69
76 77 0.389757 GATGAGTACCTTCTCCCGGC 59.610 60.000 0.00 0.00 33.93 6.13
77 78 0.669077 CGATGAGTACCTTCTCCCGG 59.331 60.000 0.00 0.00 33.93 5.73
78 79 1.334243 GACGATGAGTACCTTCTCCCG 59.666 57.143 0.00 0.00 36.43 5.14
79 80 1.682323 GGACGATGAGTACCTTCTCCC 59.318 57.143 0.00 0.00 33.93 4.30
80 81 1.334243 CGGACGATGAGTACCTTCTCC 59.666 57.143 0.00 0.00 33.93 3.71
81 82 1.268640 GCGGACGATGAGTACCTTCTC 60.269 57.143 0.00 0.00 35.28 2.87
82 83 0.739561 GCGGACGATGAGTACCTTCT 59.260 55.000 0.00 0.00 0.00 2.85
83 84 0.454600 TGCGGACGATGAGTACCTTC 59.545 55.000 0.00 0.00 0.00 3.46
84 85 0.892755 TTGCGGACGATGAGTACCTT 59.107 50.000 0.00 0.00 0.00 3.50
85 86 0.456221 CTTGCGGACGATGAGTACCT 59.544 55.000 0.00 0.00 0.00 3.08
86 87 1.146358 GCTTGCGGACGATGAGTACC 61.146 60.000 0.00 0.00 0.00 3.34
87 88 0.457853 TGCTTGCGGACGATGAGTAC 60.458 55.000 0.00 0.00 0.00 2.73
88 89 0.457853 GTGCTTGCGGACGATGAGTA 60.458 55.000 0.00 0.00 0.00 2.59
89 90 1.738099 GTGCTTGCGGACGATGAGT 60.738 57.895 0.00 0.00 0.00 3.41
90 91 2.456119 GGTGCTTGCGGACGATGAG 61.456 63.158 0.00 0.00 31.41 2.90
91 92 2.434185 GGTGCTTGCGGACGATGA 60.434 61.111 0.00 0.00 31.41 2.92
92 93 3.853330 CGGTGCTTGCGGACGATG 61.853 66.667 0.00 0.00 31.41 3.84
101 102 4.680237 TGGTCCGAGCGGTGCTTG 62.680 66.667 8.96 0.00 39.88 4.01
102 103 4.379243 CTGGTCCGAGCGGTGCTT 62.379 66.667 8.96 0.00 39.88 3.91
107 108 4.697756 TTTGGCTGGTCCGAGCGG 62.698 66.667 1.74 1.74 40.13 5.52
108 109 3.423154 GTTTGGCTGGTCCGAGCG 61.423 66.667 7.08 0.00 40.13 5.03
109 110 3.056328 GGTTTGGCTGGTCCGAGC 61.056 66.667 5.10 5.10 37.80 5.03
110 111 2.359975 GGGTTTGGCTGGTCCGAG 60.360 66.667 0.00 0.00 37.80 4.63
111 112 3.961414 GGGGTTTGGCTGGTCCGA 61.961 66.667 0.00 0.00 37.80 4.55
112 113 3.801068 TTGGGGTTTGGCTGGTCCG 62.801 63.158 0.00 0.00 37.80 4.79
113 114 2.200092 TTGGGGTTTGGCTGGTCC 59.800 61.111 0.00 0.00 0.00 4.46
114 115 0.111639 TAGTTGGGGTTTGGCTGGTC 59.888 55.000 0.00 0.00 0.00 4.02
115 116 0.178973 GTAGTTGGGGTTTGGCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
116 117 0.898326 GGTAGTTGGGGTTTGGCTGG 60.898 60.000 0.00 0.00 0.00 4.85
117 118 0.898326 GGGTAGTTGGGGTTTGGCTG 60.898 60.000 0.00 0.00 0.00 4.85
118 119 1.463375 GGGTAGTTGGGGTTTGGCT 59.537 57.895 0.00 0.00 0.00 4.75
119 120 1.974875 CGGGTAGTTGGGGTTTGGC 60.975 63.158 0.00 0.00 0.00 4.52
120 121 1.303806 CCGGGTAGTTGGGGTTTGG 60.304 63.158 0.00 0.00 0.00 3.28
121 122 0.607217 GTCCGGGTAGTTGGGGTTTG 60.607 60.000 0.00 0.00 0.00 2.93
122 123 1.763120 GTCCGGGTAGTTGGGGTTT 59.237 57.895 0.00 0.00 0.00 3.27
123 124 2.586293 CGTCCGGGTAGTTGGGGTT 61.586 63.158 0.00 0.00 0.00 4.11
124 125 2.999063 CGTCCGGGTAGTTGGGGT 60.999 66.667 0.00 0.00 0.00 4.95
125 126 2.999063 ACGTCCGGGTAGTTGGGG 60.999 66.667 0.00 0.00 0.00 4.96
126 127 1.610554 ATGACGTCCGGGTAGTTGGG 61.611 60.000 14.12 0.00 0.00 4.12
127 128 0.179119 GATGACGTCCGGGTAGTTGG 60.179 60.000 14.12 0.00 0.00 3.77
128 129 0.524816 CGATGACGTCCGGGTAGTTG 60.525 60.000 14.12 0.00 34.56 3.16
129 130 0.677731 TCGATGACGTCCGGGTAGTT 60.678 55.000 14.12 0.00 40.69 2.24
130 131 1.078214 TCGATGACGTCCGGGTAGT 60.078 57.895 14.12 0.00 40.69 2.73
131 132 1.354506 GTCGATGACGTCCGGGTAG 59.645 63.158 14.12 0.00 40.69 3.18
132 133 3.501396 GTCGATGACGTCCGGGTA 58.499 61.111 14.12 0.00 40.69 3.69
159 160 3.162154 CTTCTCCCCTACCCCGCC 61.162 72.222 0.00 0.00 0.00 6.13
160 161 3.162154 CCTTCTCCCCTACCCCGC 61.162 72.222 0.00 0.00 0.00 6.13
161 162 1.457831 CTCCTTCTCCCCTACCCCG 60.458 68.421 0.00 0.00 0.00 5.73
162 163 1.074395 CCTCCTTCTCCCCTACCCC 60.074 68.421 0.00 0.00 0.00 4.95
163 164 0.691413 CACCTCCTTCTCCCCTACCC 60.691 65.000 0.00 0.00 0.00 3.69
164 165 0.691413 CCACCTCCTTCTCCCCTACC 60.691 65.000 0.00 0.00 0.00 3.18
165 166 0.691413 CCCACCTCCTTCTCCCCTAC 60.691 65.000 0.00 0.00 0.00 3.18
166 167 1.710341 CCCACCTCCTTCTCCCCTA 59.290 63.158 0.00 0.00 0.00 3.53
167 168 2.456840 CCCACCTCCTTCTCCCCT 59.543 66.667 0.00 0.00 0.00 4.79
168 169 2.692741 CCCCACCTCCTTCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
169 170 2.692741 CCCCCACCTCCTTCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
185 186 4.803426 CTGTCGGAGCTGCGTCCC 62.803 72.222 27.20 16.16 32.26 4.46
194 195 0.875059 GAAAACCCAAGCTGTCGGAG 59.125 55.000 0.00 0.00 0.00 4.63
195 196 0.181587 TGAAAACCCAAGCTGTCGGA 59.818 50.000 0.00 0.00 0.00 4.55
196 197 0.593128 CTGAAAACCCAAGCTGTCGG 59.407 55.000 0.00 0.00 0.00 4.79
197 198 0.593128 CCTGAAAACCCAAGCTGTCG 59.407 55.000 0.00 0.00 0.00 4.35
198 199 0.961753 CCCTGAAAACCCAAGCTGTC 59.038 55.000 0.00 0.00 0.00 3.51
199 200 1.115326 GCCCTGAAAACCCAAGCTGT 61.115 55.000 0.00 0.00 0.00 4.40
200 201 1.114722 TGCCCTGAAAACCCAAGCTG 61.115 55.000 0.00 0.00 0.00 4.24
201 202 0.178924 ATGCCCTGAAAACCCAAGCT 60.179 50.000 0.00 0.00 0.00 3.74
202 203 0.037046 CATGCCCTGAAAACCCAAGC 60.037 55.000 0.00 0.00 0.00 4.01
203 204 1.273327 GTCATGCCCTGAAAACCCAAG 59.727 52.381 0.00 0.00 35.07 3.61
204 205 1.337118 GTCATGCCCTGAAAACCCAA 58.663 50.000 0.00 0.00 35.07 4.12
205 206 0.541764 GGTCATGCCCTGAAAACCCA 60.542 55.000 0.00 0.00 35.07 4.51
206 207 0.541764 TGGTCATGCCCTGAAAACCC 60.542 55.000 0.00 0.00 35.07 4.11
207 208 1.337118 TTGGTCATGCCCTGAAAACC 58.663 50.000 0.00 0.00 35.07 3.27
208 209 2.963432 CATTGGTCATGCCCTGAAAAC 58.037 47.619 0.00 0.00 35.07 2.43
218 219 0.963962 GGGGCTATGCATTGGTCATG 59.036 55.000 3.54 0.00 35.73 3.07
219 220 0.557238 TGGGGCTATGCATTGGTCAT 59.443 50.000 3.54 0.00 0.00 3.06
220 221 0.106569 CTGGGGCTATGCATTGGTCA 60.107 55.000 3.54 0.00 0.00 4.02
221 222 0.825010 CCTGGGGCTATGCATTGGTC 60.825 60.000 3.54 0.00 0.00 4.02
222 223 1.231068 CCTGGGGCTATGCATTGGT 59.769 57.895 3.54 0.00 0.00 3.67
223 224 1.532316 CCCTGGGGCTATGCATTGG 60.532 63.158 3.54 0.00 0.00 3.16
224 225 1.111116 CACCCTGGGGCTATGCATTG 61.111 60.000 18.88 3.55 39.32 2.82
225 226 1.231068 CACCCTGGGGCTATGCATT 59.769 57.895 18.88 0.00 39.32 3.56
226 227 1.070127 ATCACCCTGGGGCTATGCAT 61.070 55.000 18.88 3.79 39.32 3.96
227 228 1.697394 ATCACCCTGGGGCTATGCA 60.697 57.895 18.88 0.00 39.32 3.96
228 229 1.228367 CATCACCCTGGGGCTATGC 60.228 63.158 18.88 0.00 39.32 3.14
229 230 1.228367 GCATCACCCTGGGGCTATG 60.228 63.158 18.88 17.03 39.32 2.23
230 231 2.464403 GGCATCACCCTGGGGCTAT 61.464 63.158 18.88 4.24 39.32 2.97
231 232 3.096495 GGCATCACCCTGGGGCTA 61.096 66.667 18.88 1.65 39.32 3.93
247 248 0.836400 ATCCTATGTGGCCTACGGGG 60.836 60.000 3.32 0.92 35.26 5.73
248 249 0.608640 GATCCTATGTGGCCTACGGG 59.391 60.000 3.32 5.10 35.26 5.28
249 250 0.243907 CGATCCTATGTGGCCTACGG 59.756 60.000 3.32 0.00 35.26 4.02
250 251 0.243907 CCGATCCTATGTGGCCTACG 59.756 60.000 3.32 0.00 35.26 3.51
251 252 1.629043 TCCGATCCTATGTGGCCTAC 58.371 55.000 3.32 0.69 35.26 3.18
252 253 2.179427 CATCCGATCCTATGTGGCCTA 58.821 52.381 3.32 0.00 35.26 3.93
253 254 0.979665 CATCCGATCCTATGTGGCCT 59.020 55.000 3.32 0.00 35.26 5.19
254 255 0.687354 ACATCCGATCCTATGTGGCC 59.313 55.000 0.00 0.00 35.06 5.36
255 256 1.344438 TGACATCCGATCCTATGTGGC 59.656 52.381 11.29 1.18 36.48 5.01
256 257 2.028658 CCTGACATCCGATCCTATGTGG 60.029 54.545 11.29 5.16 36.48 4.17
257 258 2.893489 TCCTGACATCCGATCCTATGTG 59.107 50.000 11.29 0.62 36.48 3.21
258 259 3.244887 TCCTGACATCCGATCCTATGT 57.755 47.619 7.18 7.18 39.00 2.29
259 260 4.607293 TTTCCTGACATCCGATCCTATG 57.393 45.455 1.35 1.35 0.00 2.23
260 261 4.656112 ACTTTTCCTGACATCCGATCCTAT 59.344 41.667 0.00 0.00 0.00 2.57
261 262 4.030913 ACTTTTCCTGACATCCGATCCTA 58.969 43.478 0.00 0.00 0.00 2.94
262 263 2.840651 ACTTTTCCTGACATCCGATCCT 59.159 45.455 0.00 0.00 0.00 3.24
263 264 3.268023 ACTTTTCCTGACATCCGATCC 57.732 47.619 0.00 0.00 0.00 3.36
264 265 4.141914 ACCTACTTTTCCTGACATCCGATC 60.142 45.833 0.00 0.00 0.00 3.69
265 266 3.775316 ACCTACTTTTCCTGACATCCGAT 59.225 43.478 0.00 0.00 0.00 4.18
266 267 3.170717 ACCTACTTTTCCTGACATCCGA 58.829 45.455 0.00 0.00 0.00 4.55
267 268 3.611766 ACCTACTTTTCCTGACATCCG 57.388 47.619 0.00 0.00 0.00 4.18
268 269 4.906618 TGAACCTACTTTTCCTGACATCC 58.093 43.478 0.00 0.00 0.00 3.51
269 270 5.794894 TCTGAACCTACTTTTCCTGACATC 58.205 41.667 0.00 0.00 0.00 3.06
270 271 5.825593 TCTGAACCTACTTTTCCTGACAT 57.174 39.130 0.00 0.00 0.00 3.06
271 272 5.513094 CCATCTGAACCTACTTTTCCTGACA 60.513 44.000 0.00 0.00 0.00 3.58
272 273 4.938226 CCATCTGAACCTACTTTTCCTGAC 59.062 45.833 0.00 0.00 0.00 3.51
273 274 4.844085 TCCATCTGAACCTACTTTTCCTGA 59.156 41.667 0.00 0.00 0.00 3.86
274 275 5.165961 TCCATCTGAACCTACTTTTCCTG 57.834 43.478 0.00 0.00 0.00 3.86
275 276 4.323868 GCTCCATCTGAACCTACTTTTCCT 60.324 45.833 0.00 0.00 0.00 3.36
276 277 3.942115 GCTCCATCTGAACCTACTTTTCC 59.058 47.826 0.00 0.00 0.00 3.13
277 278 4.579869 TGCTCCATCTGAACCTACTTTTC 58.420 43.478 0.00 0.00 0.00 2.29
278 279 4.583871 CTGCTCCATCTGAACCTACTTTT 58.416 43.478 0.00 0.00 0.00 2.27
279 280 3.620966 GCTGCTCCATCTGAACCTACTTT 60.621 47.826 0.00 0.00 0.00 2.66
280 281 2.093235 GCTGCTCCATCTGAACCTACTT 60.093 50.000 0.00 0.00 0.00 2.24
281 282 1.484240 GCTGCTCCATCTGAACCTACT 59.516 52.381 0.00 0.00 0.00 2.57
282 283 1.804372 CGCTGCTCCATCTGAACCTAC 60.804 57.143 0.00 0.00 0.00 3.18
283 284 0.461548 CGCTGCTCCATCTGAACCTA 59.538 55.000 0.00 0.00 0.00 3.08
284 285 1.220206 CGCTGCTCCATCTGAACCT 59.780 57.895 0.00 0.00 0.00 3.50
285 286 1.817099 CCGCTGCTCCATCTGAACC 60.817 63.158 0.00 0.00 0.00 3.62
286 287 1.817099 CCCGCTGCTCCATCTGAAC 60.817 63.158 0.00 0.00 0.00 3.18
287 288 1.340399 ATCCCGCTGCTCCATCTGAA 61.340 55.000 0.00 0.00 0.00 3.02
288 289 1.752358 GATCCCGCTGCTCCATCTGA 61.752 60.000 0.00 0.00 0.00 3.27
289 290 1.301558 GATCCCGCTGCTCCATCTG 60.302 63.158 0.00 0.00 0.00 2.90
290 291 2.515071 GGATCCCGCTGCTCCATCT 61.515 63.158 0.00 0.00 0.00 2.90
291 292 2.031768 GGATCCCGCTGCTCCATC 59.968 66.667 0.00 0.00 0.00 3.51
292 293 1.639635 AAAGGATCCCGCTGCTCCAT 61.640 55.000 8.55 0.00 0.00 3.41
293 294 2.300967 AAAGGATCCCGCTGCTCCA 61.301 57.895 8.55 0.00 0.00 3.86
294 295 1.821332 CAAAGGATCCCGCTGCTCC 60.821 63.158 8.55 0.00 0.00 4.70
295 296 2.476320 GCAAAGGATCCCGCTGCTC 61.476 63.158 18.53 0.00 34.62 4.26
296 297 2.439156 GCAAAGGATCCCGCTGCT 60.439 61.111 18.53 0.00 34.62 4.24
297 298 2.751436 TGCAAAGGATCCCGCTGC 60.751 61.111 18.84 18.84 36.81 5.25
298 299 2.117156 CCTGCAAAGGATCCCGCTG 61.117 63.158 8.55 12.54 0.00 5.18
299 300 2.262774 CTCCTGCAAAGGATCCCGCT 62.263 60.000 8.55 0.00 37.34 5.52
300 301 1.821332 CTCCTGCAAAGGATCCCGC 60.821 63.158 8.55 9.85 37.34 6.13
301 302 1.153086 CCTCCTGCAAAGGATCCCG 60.153 63.158 8.55 0.00 37.34 5.14
302 303 1.454663 GCCTCCTGCAAAGGATCCC 60.455 63.158 17.05 0.00 40.77 3.85
303 304 1.821332 CGCCTCCTGCAAAGGATCC 60.821 63.158 17.05 2.48 41.33 3.36
304 305 1.821332 CCGCCTCCTGCAAAGGATC 60.821 63.158 17.05 2.53 41.33 3.36
305 306 2.273449 CCGCCTCCTGCAAAGGAT 59.727 61.111 17.05 0.00 41.33 3.24
306 307 4.033776 CCCGCCTCCTGCAAAGGA 62.034 66.667 17.05 6.74 41.33 3.36
307 308 4.351054 ACCCGCCTCCTGCAAAGG 62.351 66.667 9.93 9.93 41.33 3.11
308 309 3.058160 CACCCGCCTCCTGCAAAG 61.058 66.667 0.00 0.00 41.33 2.77
309 310 2.920076 AAACACCCGCCTCCTGCAAA 62.920 55.000 0.00 0.00 41.33 3.68
310 311 3.429372 AAACACCCGCCTCCTGCAA 62.429 57.895 0.00 0.00 41.33 4.08
311 312 3.884774 AAACACCCGCCTCCTGCA 61.885 61.111 0.00 0.00 41.33 4.41
312 313 3.365265 CAAACACCCGCCTCCTGC 61.365 66.667 0.00 0.00 0.00 4.85
313 314 2.672996 CCAAACACCCGCCTCCTG 60.673 66.667 0.00 0.00 0.00 3.86
314 315 2.002018 TTTCCAAACACCCGCCTCCT 62.002 55.000 0.00 0.00 0.00 3.69
315 316 1.524008 CTTTCCAAACACCCGCCTCC 61.524 60.000 0.00 0.00 0.00 4.30
316 317 0.536460 TCTTTCCAAACACCCGCCTC 60.536 55.000 0.00 0.00 0.00 4.70
317 318 0.106419 TTCTTTCCAAACACCCGCCT 60.106 50.000 0.00 0.00 0.00 5.52
318 319 0.747852 TTTCTTTCCAAACACCCGCC 59.252 50.000 0.00 0.00 0.00 6.13
319 320 2.588027 TTTTCTTTCCAAACACCCGC 57.412 45.000 0.00 0.00 0.00 6.13
320 321 3.862845 CACTTTTTCTTTCCAAACACCCG 59.137 43.478 0.00 0.00 0.00 5.28
321 322 4.629634 CACACTTTTTCTTTCCAAACACCC 59.370 41.667 0.00 0.00 0.00 4.61
322 323 4.629634 CCACACTTTTTCTTTCCAAACACC 59.370 41.667 0.00 0.00 0.00 4.16
323 324 5.234752 ACCACACTTTTTCTTTCCAAACAC 58.765 37.500 0.00 0.00 0.00 3.32
324 325 5.245075 AGACCACACTTTTTCTTTCCAAACA 59.755 36.000 0.00 0.00 0.00 2.83
325 326 5.576774 CAGACCACACTTTTTCTTTCCAAAC 59.423 40.000 0.00 0.00 0.00 2.93
326 327 5.337169 CCAGACCACACTTTTTCTTTCCAAA 60.337 40.000 0.00 0.00 0.00 3.28
327 328 4.159506 CCAGACCACACTTTTTCTTTCCAA 59.840 41.667 0.00 0.00 0.00 3.53
328 329 3.699038 CCAGACCACACTTTTTCTTTCCA 59.301 43.478 0.00 0.00 0.00 3.53
329 330 3.699538 ACCAGACCACACTTTTTCTTTCC 59.300 43.478 0.00 0.00 0.00 3.13
330 331 4.672409 CACCAGACCACACTTTTTCTTTC 58.328 43.478 0.00 0.00 0.00 2.62
331 332 3.119137 GCACCAGACCACACTTTTTCTTT 60.119 43.478 0.00 0.00 0.00 2.52
332 333 2.427095 GCACCAGACCACACTTTTTCTT 59.573 45.455 0.00 0.00 0.00 2.52
333 334 2.024414 GCACCAGACCACACTTTTTCT 58.976 47.619 0.00 0.00 0.00 2.52
334 335 1.268539 CGCACCAGACCACACTTTTTC 60.269 52.381 0.00 0.00 0.00 2.29
335 336 0.738389 CGCACCAGACCACACTTTTT 59.262 50.000 0.00 0.00 0.00 1.94
336 337 0.393808 ACGCACCAGACCACACTTTT 60.394 50.000 0.00 0.00 0.00 2.27
337 338 0.466543 TACGCACCAGACCACACTTT 59.533 50.000 0.00 0.00 0.00 2.66
338 339 0.466543 TTACGCACCAGACCACACTT 59.533 50.000 0.00 0.00 0.00 3.16
339 340 0.466543 TTTACGCACCAGACCACACT 59.533 50.000 0.00 0.00 0.00 3.55
340 341 0.865769 CTTTACGCACCAGACCACAC 59.134 55.000 0.00 0.00 0.00 3.82
341 342 0.882927 GCTTTACGCACCAGACCACA 60.883 55.000 0.00 0.00 38.92 4.17
342 343 0.602905 AGCTTTACGCACCAGACCAC 60.603 55.000 0.00 0.00 42.61 4.16
343 344 0.602638 CAGCTTTACGCACCAGACCA 60.603 55.000 0.00 0.00 42.61 4.02
344 345 0.320421 TCAGCTTTACGCACCAGACC 60.320 55.000 0.00 0.00 42.61 3.85
345 346 1.508632 TTCAGCTTTACGCACCAGAC 58.491 50.000 0.00 0.00 42.61 3.51
346 347 2.248280 TTTCAGCTTTACGCACCAGA 57.752 45.000 0.00 0.00 42.61 3.86
347 348 3.236816 CATTTTCAGCTTTACGCACCAG 58.763 45.455 0.00 0.00 42.61 4.00
348 349 2.621055 ACATTTTCAGCTTTACGCACCA 59.379 40.909 0.00 0.00 42.61 4.17
349 350 3.282831 ACATTTTCAGCTTTACGCACC 57.717 42.857 0.00 0.00 42.61 5.01
350 351 6.741448 TTTAACATTTTCAGCTTTACGCAC 57.259 33.333 0.00 0.00 42.61 5.34
351 352 7.095857 CCATTTTAACATTTTCAGCTTTACGCA 60.096 33.333 0.00 0.00 42.61 5.24
352 353 7.095816 ACCATTTTAACATTTTCAGCTTTACGC 60.096 33.333 0.00 0.00 39.57 4.42
353 354 8.213812 CACCATTTTAACATTTTCAGCTTTACG 58.786 33.333 0.00 0.00 0.00 3.18
354 355 9.255304 TCACCATTTTAACATTTTCAGCTTTAC 57.745 29.630 0.00 0.00 0.00 2.01
355 356 9.474920 CTCACCATTTTAACATTTTCAGCTTTA 57.525 29.630 0.00 0.00 0.00 1.85
356 357 7.986889 ACTCACCATTTTAACATTTTCAGCTTT 59.013 29.630 0.00 0.00 0.00 3.51
357 358 7.500141 ACTCACCATTTTAACATTTTCAGCTT 58.500 30.769 0.00 0.00 0.00 3.74
358 359 7.054491 ACTCACCATTTTAACATTTTCAGCT 57.946 32.000 0.00 0.00 0.00 4.24
359 360 8.296713 TCTACTCACCATTTTAACATTTTCAGC 58.703 33.333 0.00 0.00 0.00 4.26
360 361 9.831737 CTCTACTCACCATTTTAACATTTTCAG 57.168 33.333 0.00 0.00 0.00 3.02
361 362 9.567776 TCTCTACTCACCATTTTAACATTTTCA 57.432 29.630 0.00 0.00 0.00 2.69
364 365 8.462016 GCATCTCTACTCACCATTTTAACATTT 58.538 33.333 0.00 0.00 0.00 2.32
365 366 7.611467 TGCATCTCTACTCACCATTTTAACATT 59.389 33.333 0.00 0.00 0.00 2.71
366 367 7.066284 GTGCATCTCTACTCACCATTTTAACAT 59.934 37.037 0.00 0.00 0.00 2.71
367 368 6.371548 GTGCATCTCTACTCACCATTTTAACA 59.628 38.462 0.00 0.00 0.00 2.41
368 369 6.455646 CGTGCATCTCTACTCACCATTTTAAC 60.456 42.308 0.00 0.00 0.00 2.01
369 370 5.580691 CGTGCATCTCTACTCACCATTTTAA 59.419 40.000 0.00 0.00 0.00 1.52
370 371 5.109210 CGTGCATCTCTACTCACCATTTTA 58.891 41.667 0.00 0.00 0.00 1.52
371 372 3.935203 CGTGCATCTCTACTCACCATTTT 59.065 43.478 0.00 0.00 0.00 1.82
372 373 3.055819 ACGTGCATCTCTACTCACCATTT 60.056 43.478 0.00 0.00 0.00 2.32
373 374 2.497675 ACGTGCATCTCTACTCACCATT 59.502 45.455 0.00 0.00 0.00 3.16
374 375 2.103373 ACGTGCATCTCTACTCACCAT 58.897 47.619 0.00 0.00 0.00 3.55
375 376 1.202348 CACGTGCATCTCTACTCACCA 59.798 52.381 0.82 0.00 0.00 4.17
376 377 1.202582 ACACGTGCATCTCTACTCACC 59.797 52.381 17.22 0.00 0.00 4.02
377 378 2.254459 CACACGTGCATCTCTACTCAC 58.746 52.381 17.22 0.00 0.00 3.51
378 379 1.202348 CCACACGTGCATCTCTACTCA 59.798 52.381 17.22 0.00 0.00 3.41
379 380 1.202582 ACCACACGTGCATCTCTACTC 59.797 52.381 17.22 0.00 0.00 2.59
380 381 1.067565 CACCACACGTGCATCTCTACT 60.068 52.381 17.22 0.00 35.18 2.57
381 382 1.350193 CACCACACGTGCATCTCTAC 58.650 55.000 17.22 0.00 35.18 2.59
382 383 0.246360 CCACCACACGTGCATCTCTA 59.754 55.000 17.22 0.00 41.53 2.43
383 384 1.004560 CCACCACACGTGCATCTCT 60.005 57.895 17.22 0.00 41.53 3.10
384 385 2.034879 CCCACCACACGTGCATCTC 61.035 63.158 17.22 0.00 41.53 2.75
385 386 2.032528 CCCACCACACGTGCATCT 59.967 61.111 17.22 0.00 41.53 2.90
386 387 2.031919 TCCCACCACACGTGCATC 59.968 61.111 17.22 0.00 41.53 3.91
387 388 2.032528 CTCCCACCACACGTGCAT 59.967 61.111 17.22 0.00 41.53 3.96
388 389 3.454587 GACTCCCACCACACGTGCA 62.455 63.158 17.22 0.00 41.53 4.57
389 390 2.660258 AAGACTCCCACCACACGTGC 62.660 60.000 17.22 0.00 41.53 5.34
390 391 0.179056 AAAGACTCCCACCACACGTG 60.179 55.000 15.48 15.48 42.62 4.49
391 392 1.416243 TAAAGACTCCCACCACACGT 58.584 50.000 0.00 0.00 0.00 4.49
392 393 2.762535 ATAAAGACTCCCACCACACG 57.237 50.000 0.00 0.00 0.00 4.49
393 394 5.070685 AGAAAATAAAGACTCCCACCACAC 58.929 41.667 0.00 0.00 0.00 3.82
394 395 5.319043 AGAAAATAAAGACTCCCACCACA 57.681 39.130 0.00 0.00 0.00 4.17
395 396 7.829706 AGAATAGAAAATAAAGACTCCCACCAC 59.170 37.037 0.00 0.00 0.00 4.16
396 397 7.928873 AGAATAGAAAATAAAGACTCCCACCA 58.071 34.615 0.00 0.00 0.00 4.17
397 398 8.809468 AAGAATAGAAAATAAAGACTCCCACC 57.191 34.615 0.00 0.00 0.00 4.61
406 407 9.741647 GGCCTCATCAAAGAATAGAAAATAAAG 57.258 33.333 0.00 0.00 0.00 1.85
407 408 8.695456 GGGCCTCATCAAAGAATAGAAAATAAA 58.305 33.333 0.84 0.00 0.00 1.40
408 409 7.287696 GGGGCCTCATCAAAGAATAGAAAATAA 59.712 37.037 0.84 0.00 0.00 1.40
409 410 6.777580 GGGGCCTCATCAAAGAATAGAAAATA 59.222 38.462 0.84 0.00 0.00 1.40
410 411 5.600069 GGGGCCTCATCAAAGAATAGAAAAT 59.400 40.000 0.84 0.00 0.00 1.82
411 412 4.956075 GGGGCCTCATCAAAGAATAGAAAA 59.044 41.667 0.84 0.00 0.00 2.29
412 413 4.017591 TGGGGCCTCATCAAAGAATAGAAA 60.018 41.667 0.00 0.00 0.00 2.52
413 414 3.527253 TGGGGCCTCATCAAAGAATAGAA 59.473 43.478 0.00 0.00 0.00 2.10
414 415 3.117888 GTGGGGCCTCATCAAAGAATAGA 60.118 47.826 9.60 0.00 0.00 1.98
415 416 3.117738 AGTGGGGCCTCATCAAAGAATAG 60.118 47.826 9.60 0.00 0.00 1.73
416 417 2.852449 AGTGGGGCCTCATCAAAGAATA 59.148 45.455 9.60 0.00 0.00 1.75
417 418 1.642762 AGTGGGGCCTCATCAAAGAAT 59.357 47.619 9.60 0.00 0.00 2.40
418 419 1.075601 AGTGGGGCCTCATCAAAGAA 58.924 50.000 9.60 0.00 0.00 2.52
419 420 1.965414 TAGTGGGGCCTCATCAAAGA 58.035 50.000 9.60 0.00 0.00 2.52
420 421 2.806945 TTAGTGGGGCCTCATCAAAG 57.193 50.000 9.60 0.00 0.00 2.77
421 422 3.435026 GCTATTAGTGGGGCCTCATCAAA 60.435 47.826 9.60 3.81 0.00 2.69
422 423 2.106511 GCTATTAGTGGGGCCTCATCAA 59.893 50.000 9.60 6.43 0.00 2.57
423 424 1.699634 GCTATTAGTGGGGCCTCATCA 59.300 52.381 9.60 0.00 0.00 3.07
424 425 1.699634 TGCTATTAGTGGGGCCTCATC 59.300 52.381 9.60 2.16 0.00 2.92
425 426 1.701847 CTGCTATTAGTGGGGCCTCAT 59.298 52.381 9.60 0.00 0.00 2.90
426 427 1.131638 CTGCTATTAGTGGGGCCTCA 58.868 55.000 0.00 0.00 0.00 3.86
427 428 0.250510 GCTGCTATTAGTGGGGCCTC 60.251 60.000 0.84 0.00 0.00 4.70
428 429 0.988145 TGCTGCTATTAGTGGGGCCT 60.988 55.000 0.84 0.00 0.00 5.19
429 430 0.111253 ATGCTGCTATTAGTGGGGCC 59.889 55.000 0.00 0.00 0.00 5.80
430 431 2.224523 TGTATGCTGCTATTAGTGGGGC 60.225 50.000 0.00 0.00 0.00 5.80
431 432 3.769739 TGTATGCTGCTATTAGTGGGG 57.230 47.619 0.00 0.00 0.00 4.96
432 433 4.456911 CCAATGTATGCTGCTATTAGTGGG 59.543 45.833 0.00 0.00 0.00 4.61
433 434 4.456911 CCCAATGTATGCTGCTATTAGTGG 59.543 45.833 0.00 4.34 0.00 4.00
434 435 4.456911 CCCCAATGTATGCTGCTATTAGTG 59.543 45.833 0.00 0.00 0.00 2.74
435 436 4.350816 TCCCCAATGTATGCTGCTATTAGT 59.649 41.667 0.00 0.00 0.00 2.24
436 437 4.910195 TCCCCAATGTATGCTGCTATTAG 58.090 43.478 0.00 0.00 0.00 1.73
437 438 4.597075 TCTCCCCAATGTATGCTGCTATTA 59.403 41.667 0.00 0.00 0.00 0.98
438 439 3.395607 TCTCCCCAATGTATGCTGCTATT 59.604 43.478 0.00 0.00 0.00 1.73
439 440 2.981784 TCTCCCCAATGTATGCTGCTAT 59.018 45.455 0.00 0.00 0.00 2.97
440 441 2.407562 TCTCCCCAATGTATGCTGCTA 58.592 47.619 0.00 0.00 0.00 3.49
441 442 1.216064 TCTCCCCAATGTATGCTGCT 58.784 50.000 0.00 0.00 0.00 4.24
442 443 2.057137 TTCTCCCCAATGTATGCTGC 57.943 50.000 0.00 0.00 0.00 5.25
463 464 9.988815 AGTAGTTTGAAGCATCTATATCGATTT 57.011 29.630 1.71 0.00 0.00 2.17
464 465 9.988815 AAGTAGTTTGAAGCATCTATATCGATT 57.011 29.630 1.71 0.00 0.00 3.34
465 466 9.988815 AAAGTAGTTTGAAGCATCTATATCGAT 57.011 29.630 2.16 2.16 0.00 3.59
466 467 9.817809 AAAAGTAGTTTGAAGCATCTATATCGA 57.182 29.630 0.00 0.00 0.00 3.59
516 517 7.581270 TACAGATCACATGTACAATGGTGACAT 60.581 37.037 22.63 14.88 42.43 3.06
517 518 6.295575 TACAGATCACATGTACAATGGTGACA 60.296 38.462 22.63 9.01 42.43 3.58
518 519 4.937620 ACAGATCACATGTACAATGGTGAC 59.062 41.667 22.63 17.63 42.43 3.67
519 520 5.164620 ACAGATCACATGTACAATGGTGA 57.835 39.130 22.50 22.50 43.61 4.02
520 521 6.203530 GGATACAGATCACATGTACAATGGTG 59.796 42.308 15.59 15.59 36.04 4.17
521 522 6.126796 TGGATACAGATCACATGTACAATGGT 60.127 38.462 0.00 0.00 46.17 3.55
522 523 6.290605 TGGATACAGATCACATGTACAATGG 58.709 40.000 0.00 0.00 46.17 3.16
540 541 3.077359 GGCAACAGCCTCATATGGATAC 58.923 50.000 2.13 0.00 45.21 2.24
541 542 3.423539 GGCAACAGCCTCATATGGATA 57.576 47.619 2.13 0.00 45.21 2.59
542 543 2.283145 GGCAACAGCCTCATATGGAT 57.717 50.000 2.13 0.00 45.21 3.41
543 544 3.806941 GGCAACAGCCTCATATGGA 57.193 52.632 2.13 0.00 45.21 3.41
621 622 0.392193 ATCGGCTCTGCTTTGGACTG 60.392 55.000 0.00 0.00 0.00 3.51
641 642 4.593864 GAGATCGTGGGGCTCGCC 62.594 72.222 0.00 0.00 0.00 5.54
741 742 8.166726 ACAGGATTAAAGGAAGACATTCTTTCT 58.833 33.333 0.00 0.00 44.00 2.52
742 743 8.341892 ACAGGATTAAAGGAAGACATTCTTTC 57.658 34.615 0.00 0.00 36.73 2.62
743 744 7.944554 TGACAGGATTAAAGGAAGACATTCTTT 59.055 33.333 0.00 0.00 36.73 2.52
744 745 7.461749 TGACAGGATTAAAGGAAGACATTCTT 58.538 34.615 0.00 0.00 39.87 2.52
745 746 7.020827 TGACAGGATTAAAGGAAGACATTCT 57.979 36.000 0.00 0.00 35.63 2.40
746 747 7.687941 TTGACAGGATTAAAGGAAGACATTC 57.312 36.000 0.00 0.00 34.46 2.67
747 748 8.477419 TTTTGACAGGATTAAAGGAAGACATT 57.523 30.769 0.00 0.00 0.00 2.71
748 749 8.477419 TTTTTGACAGGATTAAAGGAAGACAT 57.523 30.769 0.00 0.00 0.00 3.06
749 750 7.777910 TCTTTTTGACAGGATTAAAGGAAGACA 59.222 33.333 0.00 0.00 0.00 3.41
750 751 8.166422 TCTTTTTGACAGGATTAAAGGAAGAC 57.834 34.615 0.00 0.00 0.00 3.01
751 752 8.760980 TTCTTTTTGACAGGATTAAAGGAAGA 57.239 30.769 0.00 0.00 0.00 2.87
752 753 9.468532 CTTTCTTTTTGACAGGATTAAAGGAAG 57.531 33.333 0.00 0.00 35.97 3.46
753 754 9.196139 TCTTTCTTTTTGACAGGATTAAAGGAA 57.804 29.630 0.00 0.00 0.00 3.36
754 755 8.760980 TCTTTCTTTTTGACAGGATTAAAGGA 57.239 30.769 0.00 0.00 0.00 3.36
755 756 9.987272 ATTCTTTCTTTTTGACAGGATTAAAGG 57.013 29.630 0.00 0.00 0.00 3.11
760 761 9.671279 AAAACATTCTTTCTTTTTGACAGGATT 57.329 25.926 0.00 0.00 0.00 3.01
761 762 9.671279 AAAAACATTCTTTCTTTTTGACAGGAT 57.329 25.926 0.00 0.00 0.00 3.24
762 763 9.150348 GAAAAACATTCTTTCTTTTTGACAGGA 57.850 29.630 0.00 0.00 31.39 3.86
763 764 8.390354 GGAAAAACATTCTTTCTTTTTGACAGG 58.610 33.333 0.00 0.00 33.99 4.00
764 765 8.110002 CGGAAAAACATTCTTTCTTTTTGACAG 58.890 33.333 0.00 0.00 33.99 3.51
765 766 7.412455 GCGGAAAAACATTCTTTCTTTTTGACA 60.412 33.333 0.00 0.00 33.99 3.58
766 767 6.899771 GCGGAAAAACATTCTTTCTTTTTGAC 59.100 34.615 0.00 0.00 33.99 3.18
767 768 6.816140 AGCGGAAAAACATTCTTTCTTTTTGA 59.184 30.769 0.00 0.00 33.99 2.69
768 769 6.901357 CAGCGGAAAAACATTCTTTCTTTTTG 59.099 34.615 0.00 0.00 33.99 2.44
790 791 1.363807 GGGTGTGGCAAAGAACAGC 59.636 57.895 0.00 0.00 42.61 4.40
791 792 0.385390 GTGGGTGTGGCAAAGAACAG 59.615 55.000 0.00 0.00 0.00 3.16
840 841 3.236003 GACGGAGGAGCGGTGGTTT 62.236 63.158 0.00 0.00 0.00 3.27
889 890 1.476291 CCACGGCCTCCTTTTATACCC 60.476 57.143 0.00 0.00 0.00 3.69
890 891 1.963172 CCACGGCCTCCTTTTATACC 58.037 55.000 0.00 0.00 0.00 2.73
908 939 0.449388 CGATGAGTTCCTGCTTTGCC 59.551 55.000 0.00 0.00 0.00 4.52
940 971 1.234821 CAGGACTCGGAGCTAGCTAG 58.765 60.000 19.38 16.84 0.00 3.42
945 976 0.462225 CTCGACAGGACTCGGAGCTA 60.462 60.000 4.58 0.00 34.27 3.32
1010 1054 4.083862 GGAGGAGGAAAGCCGCGT 62.084 66.667 4.92 0.00 39.96 6.01
1042 1098 2.806929 GTGGCAGCAGCACACAAA 59.193 55.556 14.69 0.00 44.61 2.83
1043 1099 3.585020 CGTGGCAGCAGCACACAA 61.585 61.111 17.95 0.00 44.61 3.33
1158 1220 1.079503 GGTGCTTGATGGTCTCGAAC 58.920 55.000 0.00 0.00 0.00 3.95
1328 1421 1.002033 ACCAGAGTGTCACGTACGTTC 60.002 52.381 20.23 13.54 0.00 3.95
1379 1501 0.689055 GTAAGGGTTGAGGAACGGGT 59.311 55.000 0.00 0.00 32.28 5.28
1467 1589 2.280524 CGGTTGAACAGGTCGGCA 60.281 61.111 0.00 0.00 0.00 5.69
1524 1646 1.071471 CTTGAACCACCGGAGCTGT 59.929 57.895 9.46 0.00 0.00 4.40
1566 1688 6.964807 ATTTATGAATTGCCTGCATCAGTA 57.035 33.333 0.00 0.00 0.00 2.74
1611 1757 4.806225 CTGCGAAAACAGTCTGCG 57.194 55.556 0.00 0.00 32.78 5.18
1619 1765 2.076863 AGTATGCCTGACTGCGAAAAC 58.923 47.619 0.00 0.00 0.00 2.43
1621 1767 3.603158 TTAGTATGCCTGACTGCGAAA 57.397 42.857 0.00 0.00 0.00 3.46
1624 1775 3.722147 AGAATTAGTATGCCTGACTGCG 58.278 45.455 0.00 0.00 0.00 5.18
1625 1776 4.954875 AGAGAATTAGTATGCCTGACTGC 58.045 43.478 0.00 0.00 0.00 4.40
1659 1820 2.031769 TCTTGCGAATTTCTGCACACAG 60.032 45.455 13.04 9.66 45.95 3.66
1883 2079 1.274447 CTGTGTGTGATGAGAGAGGCA 59.726 52.381 0.00 0.00 0.00 4.75
1885 2081 2.174360 TCCTGTGTGTGATGAGAGAGG 58.826 52.381 0.00 0.00 0.00 3.69
1886 2082 3.257873 ACTTCCTGTGTGTGATGAGAGAG 59.742 47.826 0.00 0.00 0.00 3.20
1887 2083 3.006217 CACTTCCTGTGTGTGATGAGAGA 59.994 47.826 0.00 0.00 41.53 3.10
1889 2086 3.391506 CACTTCCTGTGTGTGATGAGA 57.608 47.619 0.00 0.00 41.53 3.27
2008 2205 3.077519 GCAGGCCGTGGAGTCGTAT 62.078 63.158 0.00 0.00 0.00 3.06
2032 2229 1.878656 CGGCGAAGAGGTTGAGGTCT 61.879 60.000 0.00 0.00 0.00 3.85
2606 3036 8.336801 ACTTGAGAGAAGTAACTTTGTTTGTT 57.663 30.769 0.00 0.00 0.00 2.83
2695 3129 6.246420 ACTCTTATGCTGTAACTTTGCAAG 57.754 37.500 0.00 0.00 40.24 4.01
2719 3153 1.930656 AACATACCAGGGGCAGGCT 60.931 57.895 0.00 0.00 0.00 4.58
2722 3156 1.754234 GGCAACATACCAGGGGCAG 60.754 63.158 0.00 0.00 0.00 4.85
2820 3715 4.657814 TTTCCTGTAAGATTTGCCCTCT 57.342 40.909 0.00 0.00 34.07 3.69
2864 3759 5.133221 AGCTCTTAGTGTTTGGATTTGTGT 58.867 37.500 0.00 0.00 0.00 3.72
3123 4018 7.151308 TGTACTTTTCCGCATTTCATCATTTT 58.849 30.769 0.00 0.00 0.00 1.82
3152 4060 5.962031 TCCAGCCAGAACTCCTACTTAAATA 59.038 40.000 0.00 0.00 0.00 1.40
3156 4064 3.468071 TCCAGCCAGAACTCCTACTTA 57.532 47.619 0.00 0.00 0.00 2.24
3199 4109 4.211794 GGATTCAGGTGCAAATTGTTGTTG 59.788 41.667 0.00 0.00 37.06 3.33
3204 4114 3.642848 ACTTGGATTCAGGTGCAAATTGT 59.357 39.130 0.00 0.00 31.68 2.71
3213 4123 1.067295 TCTGCCACTTGGATTCAGGT 58.933 50.000 0.00 0.00 37.39 4.00
3226 4136 2.727123 TCTTCTGTTGGTTTCTGCCA 57.273 45.000 0.00 0.00 36.62 4.92
3254 4164 0.905357 CAGTTTCTGTCCCGGGAGAT 59.095 55.000 27.72 3.56 0.00 2.75
3399 4311 4.141287 CAACCAATGGACTAGTTGGAACA 58.859 43.478 16.58 3.54 46.15 3.18
3400 4312 4.142038 ACAACCAATGGACTAGTTGGAAC 58.858 43.478 16.58 0.00 46.15 3.62
3401 4313 4.447138 ACAACCAATGGACTAGTTGGAA 57.553 40.909 16.58 0.00 46.15 3.53



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.